research communications
Synthesis and
of 2-(2-hydroxyphenyl)-1,3-bis(4-methoxybenzyl)-1,3-diazinan-5-olaUniversidad Nacional de Colombia, Sede Bogotá, Facultad de Ciencias, Departamento de Química, Cra 30 No. 45-03, Bogotá, Código Postal 111321, Colombia, and bInstitut für Anorganische Chemie, J. W. Goethe-Universität Frankfurt, Max-von Laue-Str. 7, 60438 Frankfurt/Main, Germany
*Correspondence e-mail: ariverau@unal.edu.co
The redetermined structure of 2-(2-hydroxyphenyl)-1,3-bis(4-methoxybenzyl)-1,3-diazinan-5-ol, C26H30N2O4, at 173 K has orthorhombic (Pbca) symmetry. It was previously described by Bolte et al. [ Private Communication (refcode EWICEV). CCDC, Cambridge, England]. The title compound resulted from the condensation reaction between 1,3-bis{[(4-methoxyphenyl)methyl]amino}propan-2-ol and 2-hydroxybenzaldehyde in CH3OH. The structure exhibits disorder. One of the 4-methoxybenzyl groups, the hydroxy group bonded to the 1,3-diazinan ring, and the methyl group of the methoxy residue are disordered over two orientations, with occupancies of 0.807 (3)/0.193 (3), 0.642 (5)/0.358 (5), and 0.82 (4)/0.18 (4), respectively. The dihedral angles between the mean planes of the central 1,3-diazinan-5-ol and the 4-methoxyphenyl rings (both occupancy components of the disordered ring) are 88.65 (13), 85.79 (14) and 83.4 (7)°. The crystal packing is sustained by C—H⋯O and O—H⋯π interactions, giving rise to infinite chains running along the b-axis direction.
Keywords: crystal structure; hexahydropyrimidine; O—H⋯π interactions; C—H⋯O interactions; intramolecular hydrogen bond; Mannich-type bases.
CCDC reference: 2092230
1. Chemical context
Within the framework of a program intended to develop 1,2,3-trisubstituted 1,3-diazinan-5-ol derivatives with conformational properties, we were interested in probing the relation between intramolecular hydrogen bonding and the final conformations of the title compound, which was synthesized by reacting 1,3-bis{[(4-methoxyphenyl)methyl]amino}propan-2-ol, easily obtained following the reported method (Rivera, Miranda-Carvajal & Ríos-Motta, 2016), with 2-hydroxybenzaldehyde. Most six-membered heterocycles prefer to adopt chair conformations with equatorially situated substituent groups where the bulky groups attached to the heterocycles generally have a greater preference for the equatorial position than in the case of substituted cyclohexane (Wiberg et al., 2018). Consequently, the 1H NMR spectrum (CDCl3) of the title compound showed well-resolved signals for the axial and equatorial protons. It is noteworthy that the coupling constants with magnitudes between 2.9 and 3.1 Hz provide a strong evidence of the presence of an axial OH group. In this regard, it has been reported that the presence of an intramolecular hydrogen bond may stabilize the hydroxyl group in the otherwise non-preferred axial position (Koll et al., 2006). Therefore, the proton of the OH group in the 5 position of the 1,3-diazinan-5-ol ring might form an intramolecular hydrogen bond to either one or both endocyclic nitrogen atoms to stabilize its axial position; however, no such interactions were formed. Instead, the crystallographic analysis showed that the intramolecular hydrogen bonds are observed between the proton of the phenolic OH group and the nitrogen atoms of the 1,3-diazinan-5-ol ring.
2. Structural commentary
The molecular structure of the title compound is shown in Fig. 1. The 1,3-diazinan-5-ol ring (N1/C1/N2/C4/C3/C2) adopts a chair form with puckering parameters (Cremer & Pople, 1975) Q = 0.562 (3) Å, θ = 3.1 (3)°, φ = 250 (4)°, Q(2) = 0.035 (3) Å and Q(3) = −0.561 (3) Å. Atoms C2 and C3 deviate from the mean plane of the other four atoms by −0.242 (3) and 0.249 (3) Å, respectively. Atoms N1 and N2 are essentially tetrahedral (bond-angle sums are 331.8° for N1 and 330.1° for N2), while the usual ΣH–N–H angle in an ammonia molecule is 321° (Makkos et al., 2021), with their benzyl substituents in the equatorial positions and axial lone pairs. The dihedral angle between the mean planes of the phenyl rings (C21–C26) and (C31–C36) is 40.41 (19)°. The phenyl ring of the benzyl group bonded to N2 is disordered over two positions (Fig. 2), with site occupancies refining to 0.807 (3) and 0.193 (3). The aromatic rings of the major (C31–C36) and minor (C31′–C36′) components are roughly parallel, subtending a dihedral angle of 13.5 (7)°. Interestingly, the hydroxyl group bonded to the 1,3-diazinan-5-ol ring and the other methoxy group are also disordered over two positions with 0.642 (5):0.358 (5) and 0.82 (4):0.18 (4) occupancy ratio, respectively. The C3—O4 and C3—O4′ bond lengths at 1.402 (4) and 1.387 (6) Å are slightly short compared to the normal range (1.421–1.433 Å) for a C2—CH—OH group (Allen et al., 1987).
The dihedral angles between the mean plane of the 1,3-diazinan-5-ol ring [maximum deviation = 0.236 (3) Å] and the C21–C26, C31–C36 and C31′–C36′ phenyl rings of the 1,3- benzyl groups are 88.65 (13), 85.79 (19) and 83.4 (7)°, respectively, whereas the mean plane is rotated by 81.22 (13)° towards the C11–C16 phenyl ring of the 2-hydroxyphenyl substituent. The dihedral angles between this phenyl ring and the other two phenyl rings are 55.54 (13)° (C21–C26), 84.27 (19)° (C31–C36) and 77.9 (7)° (C31′–C36′), respectively.
As mentioned above, an intramolecular O—H⋯N hydrogen bonds is formed between the N1 atom of the 1,3-diazinan-5-ol ring and the OH group of the hydroxyphenyl substituent, resulting in an S(6) graph-set motif (Table1). The N⋯O distance [2.740 (3) Å] is long in comparison with the values observed in related structures [ranging from 2.671 to 2.702 Å; Rivera, Miranda-Carvajal, Ríos-Motta & Bolte, 2016; Rivera et al. 2014], indicating that the introduction of the hydroxyphenyl group in the 2-position of the 1,3-diazinan-5-ol ring decreased the strength of the intramolecular hydrogen bonds in these compounds.
3. Supramolecular features
In contrast to the supramolecular structures observed in the previously reported related 1,3-diazinan-5-ol hydrates (Rivera, Miranda-Carvajal, Ríos-Motta & Bolte, 2016; Rivera et al. 2014), where the water molecules play a significant role in assembling the three-dimensional supramolecular architecture, the molecular structure of the title compound contains only the unsolvated main molecule.
In the via C27—H27⋯O3(1 − x, + y, − z) non-conventional hydrogen bonds (Fig. 3, Table 1) into chains propagating along the b-axis direction. Adjacent chains are connected by O—H⋯π interactions (Table 1) [O4—H4⋯Cg4 = 2.96 Å O4—H4⋯Cg4 = 151°; symmetry code: 1 − x, + y, − z] involving the major occupancy position of the disordered ring (C31–C36). As a result of the disorder of the aromatic ring, the geometric parameters are less precise than they would be if the ring were not disordered. Although the structure contains three different phenyl rings, only the Cg⋯Cg distance between two symmetry-related positions (1 − x, −y, 1 − z) of the minor component (C31′–C36′; less than 20% occupancy) of the disordered phenyl ring [3.59 (1) Å] is shorter than 4 Å. It is noteworthy that the interplanar distance between the symmetry-related main parts of the C31–C36 ring is only 3.66 Å; however, the corresponding Cg⋯Cg distance is too long at 4.619 (3) Å, indicating a significant horizontal shift of the rings precluding π–π stacking.
the molecules are interlinked4. Database survey
A search of the Cambridge Structural Database (CSD, Version 2022.1, last update March 2022; Groom et al., 2016) for the 1,3-benzyl-1,3-diazinan-5-oxygen unit gave eight hits. Two similar structures have already been deposited with the CSD, namely 1,3-bis(3-tert-butyl-2-hydroxy-5-methylbenzyl)-1,3-diazinan-5-ol monohydrate (ETUYAV; Rivera, Miranda-Carvajal, Ríos-Motta & Bolte, 2016) and 1,3-bis(3-tert-butyl-2-hydroxy-5-methoxybenzyl)hexahydropyrimidin-5-ol monohydrate (JOGWAF; Rivera et al., 2014). Interestingly, in both of these structures the hydroxyl group bonded to the 1,3-diazinan-5-ol ring is disordered over two positions. The same feature is observed in the title compound. On the other hand, unlike the title compound, ETUYAV and JOGWAF crystallize as hydrates. Unfortunately, because of the multiple disordered parts of the title compound, comparison of the geometric parameters is not reasonable. Other similar compounds with more central ring substituents include 4-allyl-1,3-dibenzyl-1,2,3,4,5,6-hexahydro-5-hydroxypyrimidin-2-one (BEMHAC; Enders et al., 1999) and 5-acetoxy-1,3,4-tribenzyl-6-(1-(bromo)phenylethyl)pyrimidin-2-one (RUTCIS; De Lucca et al., 1997) and an iron complex of 1,3-bis-(3,5-di-tert-butyl-2-hydroxybenzyl)hexahydropyrimidin-5-ol (MOSYIE; Mendes et al., 2014) has also been reported.
5. Synthesis and crystallization
To a stirred solution of 1,3-bis{[(4-methoxyphenyl)methyl]amino}propan-2-ol (661 mg, 2 mmol) in methanol (20 mL) salicylaldehyde (0.21 mL, 246 mg, 2 mmol) was added dropwise. The resulting mixture was heated at reflux for 2 h and allowed to cool to room temperature. The solvent was removed under vacuum and the crude solid was washed with cold methanol and dried in vacuo. The solid was dissolved in hexane–chloroform mixture and after standing for several days at room temperature, colorless crystals suitable for X-ray diffraction were obtained. Yield 652 mg (75%), m.p. 413 K.
1H NMR (CDCl3, 400 MHz) δ 7.15 (d, 1H, J = 8.60 Hz, Ph-H), 7.12–7.13 (m, 1H, Ph-H), 7.11 (d, 4H, J = 8.80 Hz, Ph-H), 6.99 (m, 1H, Ph-H), 6.85 (d, 1H, J = 7.60 Hz, Ph-H), 6.81 (d, 4H, J = 8.80 Hz, Ph-H), 3.88 (s, 1H, NCHN), 3.76 (s, 6H, OCH3), 3.72–3.74 (m, 1H, CHOH), 3.03 (d, 2H, J = 12.0 Hz, NCH2CHOH), 2.99 (d, 2H, J = 13.0 Hz, NCH2Ph), 2.98 (d, 2H, J = 13.0 Hz, NCH2Ph), 2.22 (dd, 2H, J = 12.0 and 1.2 Hz, NCH2CHOH), 1.60 (bs, 1H, OH). The hydrogen atom of a hydroxyl group could not be assigned because of the overlaping and widening of that signal with those due to hydrogen bonds.
Elemental analysis (Thermo Scientific Flash 2000 CHNS/O elemental analyzer): Found, %: C 71.87; H 6.91; N 6.45; O 14.74. C26H30N2O4. Calculated, %: C, 71.89; H, 6.91; N, 6.45; O, 14.75.
6. Refinement
Crystal data, data collection and structure . H atoms bonded to C were refined using a riding model. Uiso values of methyl H atoms were set to 1.5Ueq(C), while the Uiso values of H atoms bonded to the remaining C atoms were set to 1.2Ueq(C). The H atom bonded to O in the major occupied site was freely refined. The H atom bonded to O in the minor occupied site was refined using a riding model with Uiso(H) set to 1.5Ueq(O). In addition, the H—O—C—C torsion angle was allowed to refine. The displacement ellipsoids of O4 and O4′ were restrained to be similar. The distances O4—C3 and O4′—C3 were restrained to be similar. Bond lengths and angles in the fragments C24–O2–C27′ and C24–O2–C27 were restrained to be similar. The displacement ellipsoids of O2 and C27/C27′ were restrained to be similar. Bond lengths, angles and displacement parameters in the fragments N2–O3′–C31′–C32′–C33′–C34′–C35′–C36′–C37′–C8′ and N2–O3–C31–C32–C33–C34–C35–C36–C37–C8 were restrained to be similar. The following restraints implemented in SHELXL (Sheldrick, 2015) were used to restrain the geometry (SADI, SAME) and Uij (SIMU, RIGU) of the disordered parts.
details are summarized in Table 2
|
Supporting information
CCDC reference: 2092230
https://doi.org/10.1107/S2056989022006508/jq2018sup1.cif
contains datablock I. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S2056989022006508/jq2018Isup2.hkl
Supporting information file. DOI: https://doi.org/10.1107/S2056989022006508/jq2018Isup3.cml
Data collection: X-AREA (Stoe & Cie, 2001); cell
X-AREA (Stoe & Cie, 2001); data reduction: X-AREA (Stoe & Cie, 2001); program(s) used to solve structure: SHELXS (Sheldrick, 2008); program(s) used to refine structure: SHELXL2019/2 (Sheldrick, 2015); molecular graphics: XP in SHELXTL-Plus (Sheldrick, 2008).C26H30N2O4 | Dx = 1.258 Mg m−3 |
Mr = 434.52 | Mo Kα radiation, λ = 0.71073 Å |
Orthorhombic, Pbca | Cell parameters from 7737 reflections |
a = 19.998 (3) Å | θ = 3.4–25.6° |
b = 9.7472 (9) Å | µ = 0.09 mm−1 |
c = 23.540 (3) Å | T = 173 K |
V = 4588.5 (10) Å3 | Block, colourless |
Z = 8 | 0.22 × 0.19 × 0.16 mm |
F(000) = 1856 |
Stoe IPDS II two-circle diffractometer | 2335 reflections with I > 2σ(I) |
Radiation source: Genix 3D IµS microfocus X-ray source | Rint = 0.081 |
ω scan | θmax = 25.7°, θmin = 3.4° |
Absorption correction: multi-scan (X-Area; Stoe & Cie, 2001) | h = −24→22 |
Tmin = 0.664, Tmax = 1.000 | k = −11→11 |
18262 measured reflections | l = −24→28 |
4311 independent reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.060 | Hydrogen site location: mixed |
wR(F2) = 0.109 | H atoms treated by a mixture of independent and constrained refinement |
S = 0.95 | w = 1/[σ2(Fo2) + (0.0335P)2] where P = (Fo2 + 2Fc2)/3 |
4311 reflections | (Δ/σ)max < 0.001 |
399 parameters | Δρmax = 0.16 e Å−3 |
547 restraints | Δρmin = −0.16 e Å−3 |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
N1 | 0.64494 (9) | 0.3740 (2) | 0.25570 (9) | 0.0342 (5) | |
O1 | 0.58538 (11) | 0.4927 (3) | 0.34826 (13) | 0.0696 (7) | |
H1 | 0.5815 (18) | 0.459 (4) | 0.3119 (17) | 0.091 (15)* | |
O4 | 0.50732 (14) | 0.3007 (3) | 0.23995 (15) | 0.0555 (13) | 0.642 (5) |
H4 | 0.487042 | 0.337692 | 0.212717 | 0.083* | 0.642 (5) |
O4' | 0.5371 (3) | 0.1431 (7) | 0.1729 (3) | 0.081 (3) | 0.358 (5) |
H4' | 0.499929 | 0.107787 | 0.180638 | 0.121* | 0.358 (5) |
C1 | 0.66421 (11) | 0.2731 (2) | 0.30042 (11) | 0.0317 (6) | |
H1A | 0.703034 | 0.217195 | 0.286952 | 0.038* | |
C2 | 0.61862 (13) | 0.3081 (3) | 0.20410 (13) | 0.0457 (7) | |
H2A | 0.653972 | 0.251314 | 0.186348 | 0.055* | |
H2B | 0.604863 | 0.379158 | 0.176434 | 0.055* | |
C3 | 0.55947 (13) | 0.2191 (3) | 0.21893 (13) | 0.0464 (7) | |
H3 | 0.543834 | 0.170613 | 0.183932 | 0.056* | 0.642 (5) |
H3' | 0.522283 | 0.276920 | 0.234218 | 0.056* | 0.358 (5) |
C4 | 0.58025 (14) | 0.1144 (3) | 0.26241 (13) | 0.0477 (8) | |
H4A | 0.541151 | 0.057974 | 0.273339 | 0.057* | |
H4B | 0.614496 | 0.052832 | 0.245923 | 0.057* | |
C7 | 0.70390 (12) | 0.4597 (3) | 0.24109 (13) | 0.0418 (7) | |
H7A | 0.739601 | 0.399947 | 0.225735 | 0.050* | |
H7B | 0.721159 | 0.503354 | 0.276125 | 0.050* | |
C11 | 0.68338 (11) | 0.3498 (2) | 0.35392 (11) | 0.0330 (6) | |
C12 | 0.64143 (14) | 0.4514 (3) | 0.37613 (13) | 0.0475 (8) | |
C13 | 0.65800 (17) | 0.5142 (3) | 0.42826 (15) | 0.0586 (9) | |
H13 | 0.629526 | 0.582640 | 0.443749 | 0.070* | |
C14 | 0.71505 (17) | 0.4768 (3) | 0.45672 (15) | 0.0584 (9) | |
H14 | 0.725369 | 0.519152 | 0.491998 | 0.070* | |
C15 | 0.75702 (15) | 0.3802 (3) | 0.43525 (13) | 0.0495 (8) | |
H15 | 0.796674 | 0.355656 | 0.455011 | 0.059* | |
C16 | 0.74101 (12) | 0.3179 (3) | 0.38395 (12) | 0.0378 (6) | |
H16 | 0.770627 | 0.250933 | 0.368871 | 0.045* | |
C21 | 0.68809 (11) | 0.5699 (3) | 0.19816 (11) | 0.0350 (6) | |
C22 | 0.63905 (13) | 0.6682 (3) | 0.20784 (12) | 0.0419 (7) | |
H22 | 0.615087 | 0.666722 | 0.242676 | 0.050* | |
C23 | 0.62426 (13) | 0.7679 (3) | 0.16811 (13) | 0.0433 (7) | |
H23 | 0.590397 | 0.833729 | 0.175748 | 0.052* | |
C24 | 0.65872 (13) | 0.7720 (3) | 0.11727 (12) | 0.0403 (7) | |
O2 | 0.64754 (11) | 0.8643 (2) | 0.07398 (9) | 0.0589 (6) | |
C27 | 0.5966 (7) | 0.9663 (14) | 0.0835 (5) | 0.072 (3) | 0.82 (4) |
H27A | 0.553374 | 0.921016 | 0.089000 | 0.108* | 0.82 (4) |
H27B | 0.594104 | 1.027474 | 0.050510 | 0.108* | 0.82 (4) |
H27C | 0.607802 | 1.019893 | 0.117417 | 0.108* | 0.82 (4) |
C27' | 0.5806 (14) | 0.923 (6) | 0.070 (2) | 0.065 (8) | 0.18 (4) |
H27D | 0.567101 | 0.958041 | 0.107442 | 0.097* | 0.18 (4) |
H27E | 0.548981 | 0.851932 | 0.057900 | 0.097* | 0.18 (4) |
H27F | 0.580585 | 0.998125 | 0.042519 | 0.097* | 0.18 (4) |
C25 | 0.70868 (13) | 0.6764 (3) | 0.10696 (13) | 0.0439 (7) | |
H25 | 0.733259 | 0.679525 | 0.072447 | 0.053* | |
C26 | 0.72262 (12) | 0.5768 (3) | 0.14690 (12) | 0.0395 (7) | |
H26 | 0.756625 | 0.511338 | 0.139212 | 0.047* | |
N2 | 0.60744 (9) | 0.1826 (2) | 0.31273 (10) | 0.0383 (6) | |
O3 | 0.41646 (11) | −0.2103 (2) | 0.46241 (12) | 0.0543 (8) | 0.807 (3) |
C31 | 0.56972 (15) | −0.0008 (3) | 0.37903 (16) | 0.0347 (8) | 0.807 (3) |
C32 | 0.56991 (16) | −0.1417 (3) | 0.38677 (16) | 0.0373 (8) | 0.807 (3) |
H32 | 0.606369 | −0.193688 | 0.372450 | 0.045* | 0.807 (3) |
C33 | 0.51887 (15) | −0.2086 (3) | 0.41458 (15) | 0.0410 (9) | 0.807 (3) |
H33 | 0.520469 | −0.305216 | 0.419593 | 0.049* | 0.807 (3) |
C34 | 0.4650 (3) | −0.1337 (7) | 0.4353 (4) | 0.0414 (12) | 0.807 (3) |
C35 | 0.46267 (16) | 0.0054 (4) | 0.42766 (18) | 0.0427 (9) | 0.807 (3) |
H35 | 0.425728 | 0.056923 | 0.441423 | 0.051* | 0.807 (3) |
C36 | 0.51522 (17) | 0.0710 (4) | 0.39942 (16) | 0.0433 (9) | 0.807 (3) |
H36 | 0.513401 | 0.167498 | 0.394115 | 0.052* | 0.807 (3) |
C37 | 0.3584 (3) | −0.1389 (5) | 0.4817 (3) | 0.0555 (14) | 0.807 (3) |
H37A | 0.327839 | −0.203731 | 0.500109 | 0.083* | 0.807 (3) |
H37B | 0.371569 | −0.067890 | 0.508933 | 0.083* | 0.807 (3) |
H37C | 0.335876 | −0.096122 | 0.449219 | 0.083* | 0.807 (3) |
C8 | 0.6279 (2) | 0.0714 (4) | 0.35223 (17) | 0.0386 (10) | 0.807 (3) |
H8A | 0.656337 | 0.110931 | 0.382523 | 0.046* | 0.807 (3) |
H8B | 0.655174 | 0.003572 | 0.331143 | 0.046* | 0.807 (3) |
O3' | 0.3808 (5) | −0.0422 (11) | 0.4830 (5) | 0.051 (2) | 0.193 (3) |
C31' | 0.5554 (8) | 0.0528 (13) | 0.3947 (7) | 0.038 (2) | 0.193 (3) |
C32' | 0.5373 (7) | −0.0836 (13) | 0.3961 (7) | 0.0423 (18) | 0.193 (3) |
H32' | 0.562669 | −0.150686 | 0.376320 | 0.051* | 0.193 (3) |
C33' | 0.4778 (15) | −0.123 (3) | 0.4290 (18) | 0.046 (2) | 0.193 (3) |
H33' | 0.465784 | −0.216326 | 0.433355 | 0.055* | 0.193 (3) |
C34' | 0.4398 (7) | −0.0205 (13) | 0.4532 (7) | 0.045 (2) | 0.193 (3) |
C35' | 0.4582 (6) | 0.1174 (12) | 0.4500 (6) | 0.041 (2) | 0.193 (3) |
H35' | 0.431650 | 0.186024 | 0.467596 | 0.049* | 0.193 (3) |
C36' | 0.5156 (5) | 0.1526 (13) | 0.4208 (6) | 0.039 (2) | 0.193 (3) |
H36' | 0.528306 | 0.246367 | 0.418490 | 0.047* | 0.193 (3) |
C37' | 0.3661 (13) | −0.1853 (19) | 0.4926 (14) | 0.060 (5) | 0.193 (3) |
H37D | 0.324024 | −0.193397 | 0.513728 | 0.089* | 0.193 (3) |
H37E | 0.361821 | −0.232464 | 0.456030 | 0.089* | 0.193 (3) |
H37F | 0.402342 | −0.227054 | 0.514611 | 0.089* | 0.193 (3) |
C8' | 0.6183 (8) | 0.1040 (18) | 0.3664 (6) | 0.039 (3) | 0.193 (3) |
H8C | 0.642506 | 0.163498 | 0.393605 | 0.047* | 0.193 (3) |
H8D | 0.647309 | 0.024347 | 0.358023 | 0.047* | 0.193 (3) |
U11 | U22 | U33 | U12 | U13 | U23 | |
N1 | 0.0291 (10) | 0.0343 (11) | 0.0394 (14) | −0.0033 (9) | −0.0047 (10) | 0.0072 (11) |
O1 | 0.0639 (14) | 0.0682 (15) | 0.077 (2) | 0.0357 (12) | 0.0098 (14) | 0.0027 (15) |
O4 | 0.0386 (18) | 0.053 (2) | 0.075 (3) | 0.0011 (15) | −0.0129 (17) | 0.0146 (18) |
O4' | 0.080 (5) | 0.077 (5) | 0.085 (6) | −0.021 (4) | −0.035 (4) | −0.014 (4) |
C1 | 0.0294 (12) | 0.0279 (13) | 0.0378 (17) | 0.0049 (11) | −0.0013 (11) | 0.0018 (12) |
C2 | 0.0453 (16) | 0.0478 (18) | 0.0440 (19) | −0.0053 (13) | −0.0089 (13) | 0.0045 (15) |
C3 | 0.0449 (16) | 0.0424 (16) | 0.052 (2) | −0.0054 (14) | −0.0148 (14) | 0.0031 (15) |
C4 | 0.0491 (16) | 0.0340 (15) | 0.060 (2) | −0.0079 (13) | −0.0141 (15) | 0.0048 (15) |
C7 | 0.0340 (13) | 0.0427 (17) | 0.0488 (19) | −0.0053 (12) | −0.0003 (12) | 0.0103 (14) |
C11 | 0.0372 (13) | 0.0249 (13) | 0.0370 (16) | −0.0019 (11) | 0.0059 (12) | 0.0048 (12) |
C12 | 0.0516 (17) | 0.0371 (16) | 0.054 (2) | 0.0098 (13) | 0.0098 (15) | 0.0084 (15) |
C13 | 0.082 (2) | 0.0371 (17) | 0.057 (2) | 0.0042 (17) | 0.0285 (19) | −0.0050 (16) |
C14 | 0.080 (2) | 0.048 (2) | 0.047 (2) | −0.0206 (18) | 0.0063 (19) | −0.0047 (17) |
C15 | 0.0560 (17) | 0.0540 (18) | 0.0387 (18) | −0.0203 (16) | 0.0016 (15) | 0.0011 (16) |
C16 | 0.0343 (14) | 0.0401 (15) | 0.0390 (17) | −0.0060 (12) | 0.0031 (12) | 0.0030 (14) |
C21 | 0.0317 (13) | 0.0351 (14) | 0.0383 (17) | −0.0052 (12) | −0.0003 (12) | 0.0018 (13) |
C22 | 0.0464 (15) | 0.0445 (16) | 0.0348 (17) | −0.0016 (13) | 0.0090 (13) | 0.0006 (14) |
C23 | 0.0508 (17) | 0.0333 (15) | 0.0457 (19) | 0.0063 (13) | 0.0039 (14) | 0.0010 (14) |
C24 | 0.0474 (16) | 0.0311 (14) | 0.0425 (19) | −0.0078 (13) | 0.0014 (14) | 0.0049 (14) |
O2 | 0.0808 (14) | 0.0443 (12) | 0.0514 (15) | 0.0060 (11) | 0.0072 (11) | 0.0169 (11) |
C27 | 0.098 (5) | 0.041 (4) | 0.076 (5) | 0.015 (4) | 0.000 (3) | 0.023 (3) |
C27' | 0.095 (9) | 0.034 (15) | 0.065 (19) | 0.006 (9) | 0.001 (9) | 0.019 (14) |
C25 | 0.0477 (16) | 0.0453 (17) | 0.0389 (18) | −0.0069 (14) | 0.0129 (13) | 0.0034 (14) |
C26 | 0.0375 (14) | 0.0373 (15) | 0.0438 (19) | 0.0013 (12) | 0.0046 (12) | 0.0047 (14) |
N2 | 0.0321 (11) | 0.0356 (12) | 0.0473 (15) | −0.0055 (10) | −0.0070 (10) | 0.0145 (10) |
O3 | 0.0421 (13) | 0.0374 (13) | 0.084 (2) | −0.0022 (11) | 0.0177 (13) | 0.0050 (13) |
C31 | 0.0315 (16) | 0.0299 (17) | 0.043 (2) | 0.0002 (14) | −0.0070 (14) | 0.0052 (16) |
C32 | 0.0328 (16) | 0.0299 (16) | 0.049 (2) | 0.0019 (14) | −0.0058 (15) | 0.0022 (16) |
C33 | 0.0390 (16) | 0.0256 (16) | 0.059 (2) | −0.0024 (14) | −0.0003 (15) | 0.0016 (16) |
C34 | 0.036 (2) | 0.036 (2) | 0.052 (3) | −0.0054 (18) | 0.000 (2) | 0.0018 (18) |
C35 | 0.0372 (17) | 0.0326 (17) | 0.058 (2) | 0.0028 (14) | 0.0021 (16) | 0.0016 (16) |
C36 | 0.0425 (18) | 0.0286 (18) | 0.059 (2) | −0.0006 (16) | −0.0040 (17) | 0.0074 (17) |
C37 | 0.049 (2) | 0.055 (3) | 0.063 (3) | 0.008 (2) | 0.016 (2) | 0.011 (3) |
C8 | 0.0358 (18) | 0.031 (2) | 0.049 (2) | 0.0034 (15) | −0.0056 (16) | 0.0100 (18) |
O3' | 0.053 (4) | 0.044 (4) | 0.057 (5) | −0.006 (4) | 0.006 (4) | 0.000 (4) |
C31' | 0.034 (3) | 0.030 (3) | 0.049 (4) | 0.000 (3) | −0.010 (3) | 0.009 (3) |
C32' | 0.041 (3) | 0.032 (3) | 0.054 (4) | −0.002 (3) | −0.002 (3) | 0.004 (3) |
C33' | 0.043 (4) | 0.035 (4) | 0.060 (4) | −0.007 (3) | 0.003 (4) | 0.003 (4) |
C34' | 0.043 (4) | 0.036 (4) | 0.056 (4) | −0.004 (3) | −0.002 (3) | 0.002 (3) |
C35' | 0.039 (4) | 0.033 (4) | 0.051 (5) | −0.002 (3) | −0.011 (4) | 0.003 (4) |
C36' | 0.036 (4) | 0.031 (4) | 0.050 (5) | 0.000 (4) | −0.013 (4) | 0.006 (4) |
C37' | 0.056 (9) | 0.048 (7) | 0.075 (10) | −0.008 (6) | −0.001 (8) | 0.004 (6) |
C8' | 0.034 (4) | 0.031 (5) | 0.051 (4) | 0.001 (4) | −0.008 (4) | 0.011 (4) |
N1—C2 | 1.472 (3) | C27—H27C | 0.9800 |
N1—C7 | 1.486 (3) | C27'—H27D | 0.9800 |
N1—C1 | 1.491 (3) | C27'—H27E | 0.9800 |
O1—C12 | 1.360 (4) | C27'—H27F | 0.9800 |
O1—H1 | 0.92 (4) | C25—C26 | 1.380 (4) |
O4—C3 | 1.402 (4) | C25—H25 | 0.9500 |
O4—H4 | 0.8400 | C26—H26 | 0.9500 |
O4'—C3 | 1.387 (6) | N2—C8 | 1.486 (4) |
O4'—H4' | 0.8400 | N2—C8' | 1.494 (8) |
C1—N2 | 1.467 (3) | O3—C34 | 1.382 (5) |
C1—C11 | 1.514 (4) | O3—C37 | 1.428 (5) |
C1—H1A | 1.0000 | C31—C36 | 1.381 (5) |
C2—C3 | 1.508 (4) | C31—C32 | 1.385 (4) |
C2—H2A | 0.9900 | C31—C8 | 1.499 (5) |
C2—H2B | 0.9900 | C32—C33 | 1.377 (4) |
C3—C4 | 1.504 (4) | C32—H32 | 0.9500 |
C3—H3 | 1.0000 | C33—C34 | 1.389 (7) |
C3—H3' | 1.0000 | C33—H33 | 0.9500 |
C4—N2 | 1.463 (4) | C34—C35 | 1.369 (7) |
C4—H4A | 0.9900 | C35—C36 | 1.398 (5) |
C4—H4B | 0.9900 | C35—H35 | 0.9500 |
C7—C21 | 1.508 (4) | C36—H36 | 0.9500 |
C7—H7A | 0.9900 | C37—H37A | 0.9800 |
C7—H7B | 0.9900 | C37—H37B | 0.9800 |
C11—C16 | 1.387 (3) | C37—H37C | 0.9800 |
C11—C12 | 1.400 (4) | C8—H8A | 0.9900 |
C12—C13 | 1.411 (4) | C8—H8B | 0.9900 |
C13—C14 | 1.372 (4) | O3'—C34' | 1.388 (14) |
C13—H13 | 0.9500 | O3'—C37' | 1.443 (15) |
C14—C15 | 1.359 (4) | C31'—C32' | 1.378 (12) |
C14—H14 | 0.9500 | C31'—C36' | 1.400 (12) |
C15—C16 | 1.389 (4) | C31'—C8' | 1.508 (15) |
C15—H15 | 0.9500 | C32'—C33' | 1.47 (3) |
C16—H16 | 0.9500 | C32'—H32' | 0.9500 |
C21—C22 | 1.390 (4) | C33'—C34' | 1.38 (4) |
C21—C26 | 1.392 (4) | C33'—H33' | 0.9500 |
C22—C23 | 1.381 (4) | C34'—C35' | 1.396 (12) |
C22—H22 | 0.9500 | C35'—C36' | 1.380 (11) |
C23—C24 | 1.382 (4) | C35'—H35' | 0.9500 |
C23—H23 | 0.9500 | C36'—H36' | 0.9500 |
C24—O2 | 1.378 (3) | C37'—H37D | 0.9800 |
C24—C25 | 1.387 (4) | C37'—H37E | 0.9800 |
O2—C27 | 1.440 (5) | C37'—H37F | 0.9800 |
O2—C27' | 1.459 (16) | C8'—H8C | 0.9900 |
C27—H27A | 0.9800 | C8'—H8D | 0.9900 |
C27—H27B | 0.9800 | ||
C2—N1—C7 | 109.8 (2) | O2—C27'—H27D | 109.5 |
C2—N1—C1 | 112.8 (2) | O2—C27'—H27E | 109.5 |
C7—N1—C1 | 109.24 (18) | H27D—C27'—H27E | 109.5 |
C12—O1—H1 | 114 (2) | O2—C27'—H27F | 109.5 |
C3—O4—H4 | 109.5 | H27D—C27'—H27F | 109.5 |
C3—O4'—H4' | 109.5 | H27E—C27'—H27F | 109.5 |
N2—C1—N1 | 109.64 (18) | C26—C25—C24 | 119.9 (3) |
N2—C1—C11 | 109.2 (2) | C26—C25—H25 | 120.0 |
N1—C1—C11 | 109.1 (2) | C24—C25—H25 | 120.0 |
N2—C1—H1A | 109.6 | C25—C26—C21 | 121.6 (2) |
N1—C1—H1A | 109.6 | C25—C26—H26 | 119.2 |
C11—C1—H1A | 109.6 | C21—C26—H26 | 119.2 |
N1—C2—C3 | 109.9 (2) | C4—N2—C1 | 113.6 (2) |
N1—C2—H2A | 109.7 | C4—N2—C8 | 106.1 (2) |
C3—C2—H2A | 109.7 | C1—N2—C8 | 110.4 (2) |
N1—C2—H2B | 109.7 | C4—N2—C8' | 120.4 (8) |
C3—C2—H2B | 109.7 | C1—N2—C8' | 111.3 (7) |
H2A—C2—H2B | 108.2 | C34—O3—C37 | 117.1 (4) |
O4'—C3—C4 | 105.0 (4) | C36—C31—C32 | 117.3 (3) |
O4—C3—C4 | 110.5 (3) | C36—C31—C8 | 121.4 (3) |
O4'—C3—C2 | 112.2 (4) | C32—C31—C8 | 121.2 (3) |
O4—C3—C2 | 109.8 (3) | C33—C32—C31 | 122.0 (3) |
C4—C3—C2 | 109.3 (2) | C33—C32—H32 | 119.0 |
O4—C3—H3 | 109.0 | C31—C32—H32 | 119.0 |
C4—C3—H3 | 109.0 | C32—C33—C34 | 119.5 (4) |
C2—C3—H3 | 109.0 | C32—C33—H33 | 120.2 |
O4'—C3—H3' | 110.1 | C34—C33—H33 | 120.2 |
C4—C3—H3' | 110.1 | C35—C34—O3 | 124.9 (5) |
C2—C3—H3' | 110.1 | C35—C34—C33 | 120.1 (4) |
N2—C4—C3 | 110.2 (2) | O3—C34—C33 | 115.0 (5) |
N2—C4—H4A | 109.6 | C34—C35—C36 | 119.3 (4) |
C3—C4—H4A | 109.6 | C34—C35—H35 | 120.4 |
N2—C4—H4B | 109.6 | C36—C35—H35 | 120.4 |
C3—C4—H4B | 109.6 | C31—C36—C35 | 121.8 (3) |
H4A—C4—H4B | 108.1 | C31—C36—H36 | 119.1 |
N1—C7—C21 | 112.9 (2) | C35—C36—H36 | 119.1 |
N1—C7—H7A | 109.0 | O3—C37—H37A | 109.5 |
C21—C7—H7A | 109.0 | O3—C37—H37B | 109.5 |
N1—C7—H7B | 109.0 | H37A—C37—H37B | 109.5 |
C21—C7—H7B | 109.0 | O3—C37—H37C | 109.5 |
H7A—C7—H7B | 107.8 | H37A—C37—H37C | 109.5 |
C16—C11—C12 | 117.8 (3) | H37B—C37—H37C | 109.5 |
C16—C11—C1 | 121.6 (2) | N2—C8—C31 | 113.1 (3) |
C12—C11—C1 | 120.6 (2) | N2—C8—H8A | 109.0 |
O1—C12—C11 | 121.6 (3) | C31—C8—H8A | 109.0 |
O1—C12—C13 | 119.0 (3) | N2—C8—H8B | 109.0 |
C11—C12—C13 | 119.4 (3) | C31—C8—H8B | 109.0 |
C14—C13—C12 | 120.3 (3) | H8A—C8—H8B | 107.8 |
C14—C13—H13 | 119.8 | C34'—O3'—C37' | 113.6 (14) |
C12—C13—H13 | 119.8 | C32'—C31'—C36' | 120.7 (12) |
C15—C14—C13 | 121.1 (3) | C32'—C31'—C8' | 123.3 (12) |
C15—C14—H14 | 119.5 | C36'—C31'—C8' | 116.0 (11) |
C13—C14—H14 | 119.5 | C31'—C32'—C33' | 118.4 (17) |
C14—C15—C16 | 119.0 (3) | C31'—C32'—H32' | 120.8 |
C14—C15—H15 | 120.5 | C33'—C32'—H32' | 120.8 |
C16—C15—H15 | 120.5 | C34'—C33'—C32' | 119 (2) |
C11—C16—C15 | 122.4 (3) | C34'—C33'—H33' | 120.7 |
C11—C16—H16 | 118.8 | C32'—C33'—H33' | 120.7 |
C15—C16—H16 | 118.8 | C33'—C34'—O3' | 124.6 (16) |
C22—C21—C26 | 117.3 (2) | C33'—C34'—C35' | 121.9 (17) |
C22—C21—C7 | 121.9 (2) | O3'—C34'—C35' | 113.5 (11) |
C26—C21—C7 | 120.8 (2) | C36'—C35'—C34' | 119.1 (12) |
C23—C22—C21 | 121.7 (3) | C36'—C35'—H35' | 120.4 |
C23—C22—H22 | 119.1 | C34'—C35'—H35' | 120.4 |
C21—C22—H22 | 119.1 | C35'—C36'—C31' | 121.2 (11) |
C22—C23—C24 | 120.0 (2) | C35'—C36'—H36' | 119.4 |
C22—C23—H23 | 120.0 | C31'—C36'—H36' | 119.4 |
C24—C23—H23 | 120.0 | O3'—C37'—H37D | 109.5 |
O2—C24—C23 | 125.3 (2) | O3'—C37'—H37E | 109.5 |
O2—C24—C25 | 115.2 (3) | H37D—C37'—H37E | 109.5 |
C23—C24—C25 | 119.4 (3) | O3'—C37'—H37F | 109.5 |
C24—O2—C27 | 116.8 (4) | H37D—C37'—H37F | 109.5 |
C24—O2—C27' | 116.8 (16) | H37E—C37'—H37F | 109.5 |
O2—C27—H27A | 109.5 | N2—C8'—C31' | 115.0 (11) |
O2—C27—H27B | 109.5 | N2—C8'—H8C | 108.5 |
H27A—C27—H27B | 109.5 | C31'—C8'—H8C | 108.5 |
O2—C27—H27C | 109.5 | N2—C8'—H8D | 108.5 |
H27A—C27—H27C | 109.5 | C31'—C8'—H8D | 108.5 |
H27B—C27—H27C | 109.5 | H8C—C8'—H8D | 107.5 |
C2—N1—C1—N2 | −54.3 (3) | C22—C21—C26—C25 | −0.4 (4) |
C7—N1—C1—N2 | −176.7 (2) | C7—C21—C26—C25 | 179.7 (2) |
C2—N1—C1—C11 | −173.8 (2) | C3—C4—N2—C1 | −57.1 (3) |
C7—N1—C1—C11 | 63.8 (3) | C3—C4—N2—C8 | −178.6 (2) |
C7—N1—C2—C3 | 179.1 (2) | C3—C4—N2—C8' | 167.1 (7) |
C1—N1—C2—C3 | 57.0 (3) | N1—C1—N2—C4 | 54.3 (3) |
N1—C2—C3—O4' | −173.5 (4) | C11—C1—N2—C4 | 173.8 (2) |
N1—C2—C3—O4 | 63.9 (3) | N1—C1—N2—C8 | 173.5 (2) |
N1—C2—C3—C4 | −57.5 (3) | C11—C1—N2—C8 | −67.1 (3) |
O4'—C3—C4—N2 | 177.8 (4) | N1—C1—N2—C8' | −165.8 (8) |
O4—C3—C4—N2 | −63.8 (3) | C11—C1—N2—C8' | −46.4 (8) |
C2—C3—C4—N2 | 57.2 (3) | C36—C31—C32—C33 | −1.3 (5) |
C2—N1—C7—C21 | 58.8 (3) | C8—C31—C32—C33 | 175.7 (3) |
C1—N1—C7—C21 | −177.1 (2) | C31—C32—C33—C34 | 0.6 (7) |
N2—C1—C11—C16 | 107.0 (3) | C37—O3—C34—C35 | 2.8 (10) |
N1—C1—C11—C16 | −133.2 (2) | C37—O3—C34—C33 | −176.7 (5) |
N2—C1—C11—C12 | −69.9 (3) | C32—C33—C34—C35 | 0.4 (9) |
N1—C1—C11—C12 | 49.9 (3) | C32—C33—C34—O3 | 179.9 (5) |
C16—C11—C12—O1 | 177.4 (3) | O3—C34—C35—C36 | 179.9 (6) |
C1—C11—C12—O1 | −5.6 (4) | C33—C34—C35—C36 | −0.6 (10) |
C16—C11—C12—C13 | −1.7 (4) | C32—C31—C36—C35 | 1.1 (6) |
C1—C11—C12—C13 | 175.3 (3) | C8—C31—C36—C35 | −175.9 (4) |
O1—C12—C13—C14 | −178.5 (3) | C34—C35—C36—C31 | −0.2 (7) |
C11—C12—C13—C14 | 0.6 (4) | C4—N2—C8—C31 | −72.2 (4) |
C12—C13—C14—C15 | 0.7 (5) | C1—N2—C8—C31 | 164.2 (3) |
C13—C14—C15—C16 | −0.7 (4) | C36—C31—C8—N2 | −43.1 (5) |
C12—C11—C16—C15 | 1.8 (4) | C32—C31—C8—N2 | 140.1 (4) |
C1—C11—C16—C15 | −175.3 (2) | C36'—C31'—C32'—C33' | −4 (3) |
C14—C15—C16—C11 | −0.5 (4) | C8'—C31'—C32'—C33' | 175 (2) |
N1—C7—C21—C22 | 57.9 (3) | C31'—C32'—C33'—C34' | 5 (4) |
N1—C7—C21—C26 | −122.3 (3) | C32'—C33'—C34'—O3' | 177 (2) |
C26—C21—C22—C23 | 0.8 (4) | C32'—C33'—C34'—C35' | −4 (4) |
C7—C21—C22—C23 | −179.3 (2) | C37'—O3'—C34'—C33' | 7 (3) |
C21—C22—C23—C24 | −0.2 (4) | C37'—O3'—C34'—C35' | −172.6 (18) |
C22—C23—C24—O2 | 178.5 (3) | C33'—C34'—C35'—C36' | 1 (3) |
C22—C23—C24—C25 | −0.9 (4) | O3'—C34'—C35'—C36' | −179.2 (13) |
C23—C24—O2—C27 | 1.4 (10) | C34'—C35'—C36'—C31' | 0 (2) |
C25—C24—O2—C27 | −179.2 (9) | C32'—C31'—C36'—C35' | 2 (2) |
C23—C24—O2—C27' | −26 (3) | C8'—C31'—C36'—C35' | −177.4 (13) |
C25—C24—O2—C27' | 153 (3) | C4—N2—C8'—C31' | −66.0 (14) |
O2—C24—C25—C26 | −178.2 (2) | C1—N2—C8'—C31' | 157.2 (11) |
C23—C24—C25—C26 | 1.3 (4) | C32'—C31'—C8'—N2 | 108.9 (18) |
C24—C25—C26—C21 | −0.6 (4) | C36'—C31'—C8'—N2 | −72.1 (19) |
Cg4 is the centroid of the C31–C36 ring (major occupancy component). |
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1···N1 | 0.92 (4) | 2.01 (4) | 2.740 (3) | 135 (3) |
C27—H27B···O3i | 0.98 | 2.58 | 3.342 (10) | 134 |
O4—H4···Cg4ii | 0.84 | 2.96 | 3.723 (4) | 151 |
O4′—H4′···O1iii | 0.84 | 2.15 | 2.898 (6) | 148 |
C27′—H27D···O4′iv | 0.98 | 2.45 | 3.35 (6) | 153 |
C35′—H35′···O2iii | 0.95 | 2.55 | 3.254 (13) | 131 |
Symmetry codes: (i) −x+1, y+3/2, −z+1/2; (ii) −x+1, y+1/2, −z+1/2; (iii) −x+1, y−1/2, −z+1/2; (iv) x, y+1, z. |
Funding information
We acknowledge the Facultad de Ciencias de la Universidad Nacional de Colombia, Sede Bogotá, for financial support of this work (research project No. 53864).
References
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