research communications
H-pyrrol-2-yl)methyl]thiophene
and Hirshfeld surface analysis of 3-benzyl-2-[bis(1aOrganic Chemistry Department, Baku State University, Az 1148 Baku, Azerbaijan, bDepartment of Aircraft Electrics and Electronics, School of Applied Sciences, Cappadocia University, Mustafapaşa, 50420 Ürgüp, Nevşehir, Türkiye, cDepartment of Organic Substances and Technology of High-Molecular Compounds, SRI "Geotechnological Problems of Oil, Gas and Chemistry", Azerbaijan State Oil and Industry University, Azadlig ave. 20, Az-1010 Baku, Azerbaijan, dRUDN University, 6 Miklukho-Maklaya St., Moscow 117198, Russian Federation, eZelinsky Institute of Organic Chemistry of RAS, 4, 7 Leninsky Prospect, 119991 Moscow, Russian Federation, fDepartment of Physics, Faculty of Sciences, Erciyes University, 38039 Kayseri, Türkiye, and gDepartment of Chemistry, M.M.A.M.C (Tribhuvan University) Biratnagar, Nepal
*Correspondence e-mail: ajaya.bhattarai@mmamc.tu.edu.np
In the title compound, C20H18N2S, the comprises two similar molecules (A and B). In molecule A, the central thiophene ring makes dihedral angles of 89.96 (12) and 57.39 (13)° with the 1H-pyrrole rings, which are bent at 83.22 (14)° relative to each other, and makes an angle of 85.98 (11)° with the phenyl ring. In molecule B, the corresponding dihedral angles are 89.49 (13), 54.64 (12)°, 83.62 (14)° and 85.67 (11)°, respectively. In the crystal, molecular pairs are bonded to each other by N—H⋯N interactions. N—H⋯π and C—H⋯π interactions further connect the molecules, forming a three-dimensional network. A Hirshfeld surface analysis indicates that H⋯H (57.1% for molecule A; 57.3% for molecule B), C⋯H/H⋯C (30.7% for molecules A and B) and S⋯H/H⋯S (6.2% for molecule A; 6.4% for molecule B) interactions are the most important contributors to the crystal packing.
Keywords: crystal structure; thiophene ring; 1H-pyrrole ring; hydrogen bonds; Hirshfeld surface analysis.
CCDC reference: 2319528
1. Chemical context
Dipyrromethanes (Nascimento et al., 2019) are well-known synthetic scaffolds for the synthesis of (Lindsey, 2010; Yedukondalu, et al., 2011), calixpyrroles (Gale et al., 2001) and chlorins (Taniguchi et al., 2017), corroles (Orłowski et al., 2017). Other important uses of dipyrromethanes include the synthesis of dipyrromethines and their complexes (Safavora et al., 2019; Wood et al., 2007), as fluorescent markers or in coordination compounds, including borondipyrromethenes, known as BODIPYs. The synthesis of dipyrromethanes is generally based on the acid-catalyzed condensation of pyrrole with or acylchlorides in an organic solvent. Despite the large number of examples of the synthesis of dipyrromethanes, there is a lack of literature data on the synthesis of thiophene-substituted dipyrromethanes. Therefore, we used 3-benzylthiophenecarboxaldehyde (Zaytsev et al., 2023), which, when reacted with pyrrole, gives the target dipyrromethane 1 in 70% yield (Fig. 1). On the other hand, attachment of a thiophene or pyrrole moiety to the organic molecules can lead to various sorts of intermolecular non-covalent interactions, resulting in interesting coordination, catalytic supramolecular, and solvatochromic properties (Gurbanov et al., 2020a,b;Khalilov et al., 2021; Mahmoudi et al., 2017a,b; Mahmudov et al., 2015). For example, attachment of a pyrrole moiety to ligands can create additional coordination sites and interesting supramolecular architectures, which may affect their (Gurbanov et al., 2022a,b; Ma et al., 2017, 2021; Shikhaliyev et al., 2019).
2. Structural commentary
As shown Fig. 2, the title compound crystallizes with two independent molecules (A with the atom S1 and B with the atom S2) in the In molecule A, the central thiophene ring (S1/C2–C5) makes dihedral angles of 89.96 (12) and 57.39 (13)°, respectively, with the 1H-pyrrole rings (N1/C13–C16 and N2/C17–C20), which are bent at 83.22 (14)° relative to each other, and makes an angle of 85.98 (11)° with the phenyl ring (C7–C12). In molecule B, the central thiophene ring (S2/C22–C25) makes dihedral angles of 89.49 (13) and 54.64 (12)°, respectively, with the 1H-pyrrole rings (N3/C33–C36 and N4/C37–C40), which are bent at 83.62 (14)° relative to each other, and makes an angle of 85.67 (11)° with the phenyl ring (C27–C32). There is a weak intermolecular N4—H4N⋯S2 interaction (Table 1) in molecule B. Fig. 3 shows the overlay of molecules A and B in the (r.m.s. deviation 0.055 Å). Bond lengths and angles in the molecules of the title compound are comparable with those of closely related structures detailed in section 4 (Database survey).
3. Supramolecular features and Hirshfeld surface analysis
In the crystal, molecular pairs are bonded to each other by N1—H1N⋯N3 interactions (Tables 1 and 2). N—H⋯π and C–H⋯π interactions further connect the molecules, forming a three-dimensional network (Table 1; Figs, 4, 5 and 6). π-π- stacking interactions are not observed.
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Crystal Explorer 17.5 (Spackman et al., 2021) was used to generate Hirshfeld surfaces for both independent molecules. The dnorm mappings for molecules A and B were performed in the ranges −0.3807 to 1.3240 a.u. and −0.3811 to 1.3382 a.u., respectively. The N—H⋯N interactions are indicated by red areas on the Hirshfeld surfaces (Fig. 7a,b for A and Fig. 7c,d for B). Although H⋯H interactions (57.1% for molecule A and 57.3% for molecule B) contribute mainly to surface contacts, fingerprint plots (Fig. 8) show that C⋯H/H⋯C interactions (30.7% for molecules A and B) are also significant (Tables 1 and 2). Other, less notable contacts are S⋯H/H⋯S (6.2% for molecule A and 6.4% for molecule B), N⋯H/H⋯N (4.0% contribution for molecule A and 3.8% for molecule B), S⋯C/C⋯S (1.5% for molecule A and 1.3% for molecule B) and C⋯C (0.4% for molecules A and B). The comparison of the supplied data shows that molecules A and B have extremely comparable environments.
4. Database survey
Three related compounds were found in a search of the Cambridge Structural Database (CSD, version 5.42, update of September 2021; Groom et al., 2016), viz. 2-amino-N-(2-methoxyphenyl)-4,5-dimethylthiophene-3-carboxamide (CSD refcode KODXEH; Chandra Kumar et al., 2008), (2E)-1-(2,5-dimethyl-3-thienyl)-3-(2-methoxyphenyl)prop-2-en-1-one (SUZQUA; Asiri et al., 2010a) and (E)-1-(2,5-dimethyl-3-thienyl)-3-(2-hydroxyphenyl)prop-2-en-1-one (SUYYUH; Asiri et al., 2010b). The of KODXEH is consolidated by both inter- and intramolecular N—H⋯O, C—H⋯O and C—H⋯N hydrogen bonds. In the crystal of SUZQUA, molecules are linked by weak C—H⋯π and aromatic π–π stacking interactions [phenyl ring centroid–centroid separation = 3.6418 (11) Å; thiophene– thiophene ring separation = 3.8727 (9) Å]. In the crystal of SUYYUH, the molecules are linked into polymeric chains extending along the b-axis direction by intermolecular O—H⋯O hydrogen bonding. An S(6) ring motif (Bernstein et al., 1995) is formed due to a short intramolecular C—H⋯O contact. C—H⋯π interactions involving a methyl group of the 2,5-dimethylthienyl group and the benzene ring are present and π–π interactions between the centroids of the benzene and heterocyclic rings [3.7691 (9) Å] also occur.
5. Synthesis and crystallization
The starting 3-benzyl-2-thiophencarboxaldehyde (0.38 g, 1.88 mmol) and pyrrole (3.15 g, 47 mmol) were placed into a two-neck flask. The reaction mixture was purged with argon for 10 min. Trifluoroacetic acid (TFA, 21.4 mg, 0.19 mmol) was added dropwise to the reaction under stirring at r.t. After that, the reaction mixture was stirred for an hour under argon. Then Et3N (50 µL) was added to pH ∼7. The reaction mixture was poured into water (50 mL) and extracted with ethyl acetate (3 × 10 mL). The target product was purified by (eluent: heptane/ethyl acetate 10:1, TLC: heptane/ethyl acetate 4:1). The title compound was obtained as a yellowish powder, which quickly darkened in air, yield 70%, 0.416 g (0.132 mmol); m.p. 390 K (with decomp.). A single crystal of the title compound was grown from a mixture of heptane and ethyl acetate (∼10:1). IR (KBr), ν (cm−1): br. 3413 (NH). 1H NMR (700.2 MHz, CDCl3) (J, Hz): δ 7.80 (br.s, 2H, NH), 7.27 (t, J = 7.6, 2H, H Ph), 7.20 (t, J = 7.6, 1H, H Ph), 7.13 (d, J = 5.0, 1H, H Thien), 7.08 (d, J = 7.6, 2H, H Ph), 6.82 (d, J = 5.0, 1H, H Thien), 6.69–6.68 (m, 2H, H Pyr), 6.08 (dd, J = 5.7, J = 2.6, 2H, H Pyr), 6.02-6.01 (m, 2H, H Pyr), 5.76 (s, 1H, CH), 3.91 (s, 2H, CH2). 13C{1H} NMR (176.1 MHz, CDCl3): δ 140.5, 140.3, 137.0, 131.7, 129.8 (2C), 128.6 (2C), 128.5 (2C), 126.2, 123.3, 117.3 (2C), 108.5 (2C), 107.2 (2C), 37.1, 34.3. GCMS (EI, 70 eV) m/z (%): [M]+ 318 (100), 250 (63), 239 (33), 227 (16), 184 (11), 174 (45), 91 (12). Elemental analysis calculated (%) for C20H18N2S: C 75.44, H 5.70, N 8.80, S 10.07; found: C 75.67, H 5.41, N 9.09, S 9.81.
6. Refinement
Crystal data, data collection and structure . C-bound H atoms were included in the using the riding-model approximation with C—H distances of 0.95–0.99 Å, and with Uiso(H) = 1.2 or 1.5Ueq(C). The H atoms of the NH groups were found from a difference map and refined with Uiso(H) = 1.2Ueq(N).
details are summarized in Table 3
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Supporting information
CCDC reference: 2319528
https://doi.org/10.1107/S2056989023010800/jy2043sup1.cif
contains datablock I. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S2056989023010800/jy2043Isup2.hkl
C20H18N2S | Dx = 1.321 Mg m−3 |
Mr = 318.42 | Cu Kα radiation, λ = 1.54184 Å |
Tetragonal, P43 | Cell parameters from 21419 reflections |
a = 7.74413 (3) Å | θ = 3.3–79.7° |
c = 53.4131 (3) Å | µ = 1.78 mm−1 |
V = 3203.27 (3) Å3 | T = 100 K |
Z = 8 | Prism, yellow |
F(000) = 1344 | 0.18 × 0.15 × 0.12 mm |
Rigaku XtaLAB Synergy-S, HyPix-6000HE area-detector diffractometer | 5366 reflections with I > 2σ(I) |
Radiation source: micro-focus sealed X-ray tube | Rint = 0.034 |
φ and ω scans | θmax = 80.0°, θmin = 3.3° |
Absorption correction: multi-scan (CrysAlisPro; Rigaku OD, 2021) | h = −9→9 |
Tmin = 0.724, Tmax = 1.000 | k = −9→9 |
25893 measured reflections | l = −48→67 |
5429 independent reflections |
Refinement on F2 | Hydrogen site location: mixed |
Least-squares matrix: full | H atoms treated by a mixture of independent and constrained refinement |
R[F2 > 2σ(F2)] = 0.029 | w = 1/[σ2(Fo2) + (0.0493P)2 + 0.7104P] where P = (Fo2 + 2Fc2)/3 |
wR(F2) = 0.077 | (Δ/σ)max = 0.001 |
S = 1.03 | Δρmax = 0.32 e Å−3 |
5429 reflections | Δρmin = −0.23 e Å−3 |
428 parameters | Extinction correction: SHELXL, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
1 restraint | Extinction coefficient: 0.00026 (3) |
Primary atom site location: difference Fourier map | Absolute structure: Flack x determined using 1866 quotients [(I+)-(I-)]/[(I+)+(I-)] (Parsons et al., 2013) |
Secondary atom site location: difference Fourier map | Absolute structure parameter: 0.003 (10) |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
x | y | z | Uiso*/Ueq | ||
S1 | 0.18679 (6) | 1.05845 (6) | 0.55945 (2) | 0.01754 (12) | |
N1 | 0.6884 (2) | 0.8179 (2) | 0.52180 (4) | 0.0144 (3) | |
H1N | 0.667 (4) | 0.712 (4) | 0.5175 (6) | 0.017* | |
N2 | 0.2448 (2) | 0.7561 (2) | 0.51944 (4) | 0.0156 (3) | |
H2N | 0.253 (4) | 0.854 (4) | 0.5127 (6) | 0.019* | |
C1 | 0.4553 (3) | 0.8123 (2) | 0.55478 (4) | 0.0142 (4) | |
H1 | 0.5195 | 0.7343 | 0.5664 | 0.017* | |
C2 | 0.3604 (3) | 0.9414 (3) | 0.57107 (4) | 0.0145 (4) | |
C3 | 0.4018 (3) | 0.9926 (3) | 0.59474 (4) | 0.0161 (4) | |
C4 | 0.2925 (3) | 1.1294 (3) | 0.60345 (4) | 0.0191 (4) | |
H4 | 0.3031 | 1.1805 | 0.6195 | 0.023* | |
C5 | 0.1722 (3) | 1.1786 (3) | 0.58638 (5) | 0.0198 (4) | |
H5 | 0.0903 | 1.2681 | 0.5890 | 0.024* | |
C6 | 0.5431 (3) | 0.9154 (3) | 0.61070 (4) | 0.0176 (4) | |
H6A | 0.6237 | 1.0080 | 0.6159 | 0.021* | |
H6B | 0.6088 | 0.8307 | 0.6006 | 0.021* | |
C7 | 0.4729 (3) | 0.8264 (3) | 0.63390 (5) | 0.0159 (4) | |
C8 | 0.5202 (3) | 0.8793 (3) | 0.65777 (5) | 0.0194 (4) | |
H8 | 0.5985 | 0.9728 | 0.6597 | 0.023* | |
C9 | 0.4541 (3) | 0.7964 (3) | 0.67890 (5) | 0.0224 (5) | |
H9 | 0.4865 | 0.8348 | 0.6951 | 0.027* | |
C10 | 0.3415 (3) | 0.6587 (3) | 0.67638 (5) | 0.0224 (5) | |
H10 | 0.2976 | 0.6018 | 0.6908 | 0.027* | |
C11 | 0.2933 (3) | 0.6044 (3) | 0.65259 (5) | 0.0225 (5) | |
H11 | 0.2159 | 0.5101 | 0.6507 | 0.027* | |
C12 | 0.3579 (3) | 0.6878 (3) | 0.63148 (5) | 0.0204 (4) | |
H12 | 0.3238 | 0.6502 | 0.6153 | 0.024* | |
C13 | 0.5903 (2) | 0.9037 (2) | 0.53919 (4) | 0.0134 (4) | |
C14 | 0.6455 (3) | 1.0726 (3) | 0.53961 (4) | 0.0164 (4) | |
H14 | 0.6009 | 1.1623 | 0.5499 | 0.020* | |
C15 | 0.7816 (3) | 1.0884 (3) | 0.52183 (5) | 0.0173 (4) | |
H15 | 0.8446 | 1.1904 | 0.5180 | 0.021* | |
C16 | 0.8047 (3) | 0.9288 (3) | 0.51117 (4) | 0.0162 (4) | |
H16 | 0.8870 | 0.9004 | 0.4986 | 0.019* | |
C17 | 0.3384 (2) | 0.6979 (3) | 0.53944 (4) | 0.0144 (4) | |
C18 | 0.2996 (3) | 0.5255 (3) | 0.54269 (5) | 0.0180 (4) | |
H18 | 0.3461 | 0.4513 | 0.5552 | 0.022* | |
C19 | 0.1777 (3) | 0.4791 (3) | 0.52405 (5) | 0.0195 (5) | |
H19 | 0.1273 | 0.3683 | 0.5217 | 0.023* | |
C20 | 0.1457 (3) | 0.6246 (3) | 0.50987 (5) | 0.0178 (4) | |
H20 | 0.0692 | 0.6324 | 0.4960 | 0.021* | |
S2 | 0.75956 (6) | 1.06184 (6) | 0.44014 (2) | 0.01709 (12) | |
N3 | 0.5130 (2) | 0.5712 (2) | 0.47912 (4) | 0.0155 (3) | |
H3N | 0.406 (4) | 0.596 (4) | 0.4827 (6) | 0.019* | |
N4 | 0.4526 (2) | 1.0157 (2) | 0.47943 (4) | 0.0146 (3) | |
H4N | 0.563 (4) | 1.018 (4) | 0.4851 (6) | 0.018* | |
C21 | 0.5097 (2) | 0.7967 (2) | 0.44507 (4) | 0.0133 (4) | |
H21 | 0.4324 | 0.7315 | 0.4334 | 0.016* | |
C22 | 0.6404 (3) | 0.8894 (2) | 0.42877 (4) | 0.0143 (4) | |
C23 | 0.6913 (3) | 0.8456 (3) | 0.40510 (4) | 0.0155 (4) | |
C24 | 0.8293 (3) | 0.9530 (3) | 0.39620 (5) | 0.0189 (4) | |
H24 | 0.8801 | 0.9410 | 0.3801 | 0.023* | |
C25 | 0.8798 (3) | 1.0738 (3) | 0.41317 (5) | 0.0195 (4) | |
H25 | 0.9702 | 1.1545 | 0.4104 | 0.023* | |
C26 | 0.6123 (3) | 0.7043 (3) | 0.38929 (4) | 0.0176 (4) | |
H26A | 0.5272 | 0.6397 | 0.3995 | 0.021* | |
H26B | 0.7039 | 0.6226 | 0.3841 | 0.021* | |
C27 | 0.5235 (3) | 0.7752 (3) | 0.36613 (4) | 0.0167 (4) | |
C28 | 0.5778 (3) | 0.7287 (3) | 0.34221 (5) | 0.0197 (4) | |
H28 | 0.6717 | 0.6510 | 0.3403 | 0.024* | |
C29 | 0.4953 (3) | 0.7956 (3) | 0.32102 (5) | 0.0224 (5) | |
H29 | 0.5339 | 0.7635 | 0.3048 | 0.027* | |
C30 | 0.3575 (3) | 0.9084 (3) | 0.32360 (5) | 0.0221 (5) | |
H30 | 0.3011 | 0.9534 | 0.3092 | 0.027* | |
C31 | 0.3025 (3) | 0.9549 (3) | 0.34739 (5) | 0.0218 (5) | |
H31 | 0.2078 | 1.0318 | 0.3493 | 0.026* | |
C32 | 0.3852 (3) | 0.8897 (3) | 0.36853 (5) | 0.0195 (4) | |
H32 | 0.3472 | 0.9234 | 0.3847 | 0.023* | |
C33 | 0.5996 (3) | 0.6628 (3) | 0.46113 (4) | 0.0141 (4) | |
C34 | 0.7663 (3) | 0.6010 (3) | 0.46030 (5) | 0.0171 (4) | |
H34 | 0.8557 | 0.6398 | 0.4495 | 0.021* | |
C35 | 0.7796 (3) | 0.4683 (3) | 0.47860 (5) | 0.0177 (4) | |
H35 | 0.8798 | 0.4021 | 0.4823 | 0.021* | |
C36 | 0.6219 (3) | 0.4531 (3) | 0.48999 (4) | 0.0163 (4) | |
H36 | 0.5931 | 0.3750 | 0.5030 | 0.020* | |
C37 | 0.3946 (3) | 0.9145 (2) | 0.46007 (4) | 0.0140 (4) | |
C38 | 0.2205 (3) | 0.9467 (3) | 0.45723 (4) | 0.0162 (4) | |
H38 | 0.1461 | 0.8951 | 0.4452 | 0.019* | |
C39 | 0.1728 (3) | 1.0709 (3) | 0.47547 (5) | 0.0178 (4) | |
H39 | 0.0606 | 1.1174 | 0.4780 | 0.021* | |
C40 | 0.3186 (3) | 1.1115 (3) | 0.48886 (4) | 0.0167 (4) | |
H40 | 0.3254 | 1.1917 | 0.5023 | 0.020* |
U11 | U22 | U33 | U12 | U13 | U23 | |
S1 | 0.0165 (2) | 0.0187 (2) | 0.0175 (3) | 0.00554 (16) | 0.00010 (19) | 0.00311 (19) |
N1 | 0.0122 (7) | 0.0127 (8) | 0.0183 (9) | −0.0003 (6) | 0.0008 (7) | −0.0008 (7) |
N2 | 0.0155 (8) | 0.0125 (8) | 0.0189 (9) | −0.0009 (6) | −0.0012 (7) | 0.0011 (7) |
C1 | 0.0134 (8) | 0.0126 (8) | 0.0165 (11) | 0.0008 (7) | 0.0005 (8) | 0.0017 (8) |
C2 | 0.0118 (8) | 0.0141 (9) | 0.0177 (10) | 0.0003 (7) | 0.0016 (8) | 0.0030 (8) |
C3 | 0.0127 (8) | 0.0169 (9) | 0.0188 (11) | −0.0003 (7) | 0.0027 (8) | 0.0018 (8) |
C4 | 0.0197 (9) | 0.0198 (10) | 0.0177 (11) | 0.0013 (8) | 0.0047 (8) | −0.0011 (8) |
C5 | 0.0184 (10) | 0.0180 (10) | 0.0230 (12) | 0.0052 (7) | 0.0054 (9) | 0.0022 (8) |
C6 | 0.0144 (9) | 0.0226 (10) | 0.0158 (10) | 0.0002 (7) | 0.0000 (8) | 0.0011 (8) |
C7 | 0.0115 (8) | 0.0185 (9) | 0.0177 (10) | 0.0041 (7) | −0.0007 (7) | 0.0020 (8) |
C8 | 0.0190 (10) | 0.0200 (10) | 0.0192 (11) | 0.0019 (8) | −0.0014 (8) | −0.0014 (8) |
C9 | 0.0243 (11) | 0.0265 (11) | 0.0165 (12) | 0.0062 (9) | −0.0007 (9) | 0.0003 (9) |
C10 | 0.0171 (10) | 0.0274 (11) | 0.0227 (12) | 0.0057 (8) | 0.0048 (9) | 0.0062 (9) |
C11 | 0.0149 (9) | 0.0246 (11) | 0.0281 (13) | 0.0004 (8) | −0.0006 (9) | 0.0045 (9) |
C12 | 0.0160 (9) | 0.0248 (10) | 0.0203 (11) | 0.0012 (8) | −0.0029 (8) | −0.0003 (9) |
C13 | 0.0112 (8) | 0.0142 (9) | 0.0148 (10) | 0.0012 (7) | −0.0013 (7) | −0.0003 (7) |
C14 | 0.0155 (9) | 0.0139 (9) | 0.0198 (11) | −0.0003 (7) | 0.0015 (8) | −0.0006 (8) |
C15 | 0.0137 (9) | 0.0167 (9) | 0.0216 (12) | −0.0026 (7) | −0.0006 (8) | 0.0028 (8) |
C16 | 0.0118 (9) | 0.0182 (9) | 0.0187 (11) | 0.0007 (7) | −0.0001 (8) | 0.0021 (8) |
C17 | 0.0128 (8) | 0.0127 (9) | 0.0177 (10) | 0.0005 (6) | 0.0023 (8) | 0.0008 (7) |
C18 | 0.0168 (9) | 0.0136 (9) | 0.0237 (12) | 0.0014 (7) | 0.0034 (8) | 0.0021 (8) |
C19 | 0.0145 (9) | 0.0135 (9) | 0.0305 (13) | −0.0027 (7) | 0.0049 (9) | −0.0030 (9) |
C20 | 0.0128 (9) | 0.0174 (9) | 0.0234 (12) | −0.0010 (7) | 0.0017 (8) | −0.0036 (8) |
S2 | 0.0176 (2) | 0.0167 (2) | 0.0169 (2) | −0.00542 (17) | −0.00261 (18) | −0.00039 (18) |
N3 | 0.0128 (8) | 0.0136 (8) | 0.0203 (10) | −0.0009 (6) | 0.0003 (7) | 0.0014 (7) |
N4 | 0.0118 (8) | 0.0137 (7) | 0.0184 (9) | 0.0005 (6) | −0.0018 (7) | −0.0013 (7) |
C21 | 0.0126 (8) | 0.0121 (8) | 0.0152 (10) | −0.0001 (7) | −0.0002 (7) | 0.0002 (7) |
C22 | 0.0132 (8) | 0.0126 (8) | 0.0171 (11) | 0.0000 (6) | −0.0024 (8) | 0.0009 (8) |
C23 | 0.0160 (9) | 0.0118 (8) | 0.0185 (11) | 0.0003 (7) | −0.0025 (8) | 0.0018 (8) |
C24 | 0.0202 (10) | 0.0190 (10) | 0.0174 (11) | −0.0002 (8) | 0.0015 (8) | 0.0037 (8) |
C25 | 0.0179 (9) | 0.0189 (10) | 0.0216 (11) | −0.0048 (7) | −0.0009 (8) | 0.0049 (8) |
C26 | 0.0236 (10) | 0.0140 (9) | 0.0151 (11) | 0.0003 (7) | −0.0006 (8) | −0.0006 (8) |
C27 | 0.0204 (9) | 0.0126 (9) | 0.0171 (11) | −0.0038 (7) | −0.0007 (8) | −0.0002 (8) |
C28 | 0.0201 (10) | 0.0192 (10) | 0.0197 (12) | −0.0020 (8) | 0.0011 (8) | −0.0014 (8) |
C29 | 0.0276 (11) | 0.0232 (11) | 0.0165 (11) | −0.0065 (9) | 0.0008 (9) | −0.0013 (9) |
C30 | 0.0275 (11) | 0.0173 (9) | 0.0214 (12) | −0.0063 (8) | −0.0076 (9) | 0.0036 (9) |
C31 | 0.0240 (11) | 0.0145 (9) | 0.0268 (13) | −0.0006 (8) | −0.0050 (9) | −0.0007 (8) |
C32 | 0.0246 (10) | 0.0159 (9) | 0.0181 (11) | −0.0009 (8) | −0.0010 (9) | −0.0032 (8) |
C33 | 0.0150 (9) | 0.0123 (8) | 0.0149 (10) | −0.0001 (7) | −0.0010 (8) | 0.0003 (7) |
C34 | 0.0145 (9) | 0.0150 (9) | 0.0219 (11) | 0.0015 (7) | 0.0028 (8) | 0.0008 (8) |
C35 | 0.0170 (9) | 0.0124 (9) | 0.0237 (12) | 0.0028 (7) | −0.0013 (9) | −0.0005 (8) |
C36 | 0.0184 (10) | 0.0111 (8) | 0.0194 (11) | −0.0012 (7) | −0.0012 (8) | 0.0018 (8) |
C37 | 0.0138 (9) | 0.0126 (8) | 0.0157 (10) | −0.0004 (7) | −0.0008 (7) | 0.0018 (7) |
C38 | 0.0127 (9) | 0.0162 (9) | 0.0196 (11) | −0.0005 (7) | −0.0015 (8) | 0.0023 (8) |
C39 | 0.0133 (9) | 0.0159 (9) | 0.0244 (12) | 0.0021 (7) | 0.0036 (8) | 0.0046 (8) |
C40 | 0.0182 (9) | 0.0125 (9) | 0.0194 (11) | 0.0016 (7) | 0.0035 (8) | −0.0003 (8) |
S1—C5 | 1.717 (2) | S2—C25 | 1.718 (2) |
S1—C2 | 1.736 (2) | S2—C22 | 1.733 (2) |
N1—C16 | 1.368 (3) | N3—C33 | 1.370 (3) |
N1—C13 | 1.371 (3) | N3—C36 | 1.373 (3) |
N1—H1N | 0.87 (3) | N3—H3N | 0.87 (3) |
N2—C17 | 1.367 (3) | N4—C40 | 1.372 (3) |
N2—C20 | 1.374 (3) | N4—C37 | 1.373 (3) |
N2—H2N | 0.84 (3) | N4—H4N | 0.91 (3) |
C1—C17 | 1.508 (3) | C21—C37 | 1.506 (3) |
C1—C13 | 1.513 (3) | C21—C33 | 1.515 (3) |
C1—C2 | 1.516 (3) | C21—C22 | 1.516 (3) |
C1—H1 | 1.0000 | C21—H21 | 1.0000 |
C2—C3 | 1.363 (3) | C22—C23 | 1.367 (3) |
C3—C4 | 1.433 (3) | C23—C24 | 1.435 (3) |
C3—C6 | 1.510 (3) | C23—C26 | 1.511 (3) |
C4—C5 | 1.358 (3) | C24—C25 | 1.360 (3) |
C4—H4 | 0.9500 | C24—H24 | 0.9500 |
C5—H5 | 0.9500 | C25—H25 | 0.9500 |
C6—C7 | 1.519 (3) | C26—C27 | 1.518 (3) |
C6—H6A | 0.9900 | C26—H26A | 0.9900 |
C6—H6B | 0.9900 | C26—H26B | 0.9900 |
C7—C8 | 1.388 (3) | C27—C28 | 1.392 (3) |
C7—C12 | 1.401 (3) | C27—C32 | 1.397 (3) |
C8—C9 | 1.395 (4) | C28—C29 | 1.399 (3) |
C8—H8 | 0.9500 | C28—H28 | 0.9500 |
C9—C10 | 1.384 (4) | C29—C30 | 1.386 (3) |
C9—H9 | 0.9500 | C29—H29 | 0.9500 |
C10—C11 | 1.389 (4) | C30—C31 | 1.388 (4) |
C10—H10 | 0.9500 | C30—H30 | 0.9500 |
C11—C12 | 1.392 (4) | C31—C32 | 1.393 (3) |
C11—H11 | 0.9500 | C31—H31 | 0.9500 |
C12—H12 | 0.9500 | C32—H32 | 0.9500 |
C13—C14 | 1.376 (3) | C33—C34 | 1.377 (3) |
C14—C15 | 1.424 (3) | C34—C35 | 1.422 (3) |
C14—H14 | 0.9500 | C34—H34 | 0.9500 |
C15—C16 | 1.372 (3) | C35—C36 | 1.370 (3) |
C15—H15 | 0.9500 | C35—H35 | 0.9500 |
C16—H16 | 0.9500 | C36—H36 | 0.9500 |
C17—C18 | 1.380 (3) | C37—C38 | 1.380 (3) |
C18—C19 | 1.419 (3) | C38—C39 | 1.418 (3) |
C18—H18 | 0.9500 | C38—H38 | 0.9500 |
C19—C20 | 1.380 (3) | C39—C40 | 1.373 (3) |
C19—H19 | 0.9500 | C39—H39 | 0.9500 |
C20—H20 | 0.9500 | C40—H40 | 0.9500 |
C5—S1—C2 | 91.97 (11) | C25—S2—C22 | 92.07 (11) |
C16—N1—C13 | 109.97 (17) | C33—N3—C36 | 109.93 (18) |
C16—N1—H1N | 128 (2) | C33—N3—H3N | 120 (2) |
C13—N1—H1N | 122 (2) | C36—N3—H3N | 130 (2) |
C17—N2—C20 | 110.05 (18) | C40—N4—C37 | 109.73 (18) |
C17—N2—H2N | 126 (2) | C40—N4—H4N | 125.4 (19) |
C20—N2—H2N | 124 (2) | C37—N4—H4N | 124.8 (19) |
C17—C1—C13 | 113.00 (18) | C37—C21—C33 | 112.67 (18) |
C17—C1—C2 | 114.11 (16) | C37—C21—C22 | 114.41 (16) |
C13—C1—C2 | 110.00 (16) | C33—C21—C22 | 110.03 (16) |
C17—C1—H1 | 106.4 | C37—C21—H21 | 106.4 |
C13—C1—H1 | 106.4 | C33—C21—H21 | 106.4 |
C2—C1—H1 | 106.4 | C22—C21—H21 | 106.4 |
C3—C2—C1 | 127.62 (18) | C23—C22—C21 | 127.31 (18) |
C3—C2—S1 | 111.20 (16) | C23—C22—S2 | 111.21 (15) |
C1—C2—S1 | 120.97 (17) | C21—C22—S2 | 121.28 (16) |
C2—C3—C4 | 112.14 (19) | C22—C23—C24 | 112.16 (19) |
C2—C3—C6 | 125.35 (19) | C22—C23—C26 | 125.44 (19) |
C4—C3—C6 | 122.5 (2) | C24—C23—C26 | 122.4 (2) |
C5—C4—C3 | 113.3 (2) | C25—C24—C23 | 113.1 (2) |
C5—C4—H4 | 123.4 | C25—C24—H24 | 123.5 |
C3—C4—H4 | 123.4 | C23—C24—H24 | 123.5 |
C4—C5—S1 | 111.42 (17) | C24—C25—S2 | 111.47 (16) |
C4—C5—H5 | 124.3 | C24—C25—H25 | 124.3 |
S1—C5—H5 | 124.3 | S2—C25—H25 | 124.3 |
C3—C6—C7 | 112.39 (17) | C23—C26—C27 | 112.14 (17) |
C3—C6—H6A | 109.1 | C23—C26—H26A | 109.2 |
C7—C6—H6A | 109.1 | C27—C26—H26A | 109.2 |
C3—C6—H6B | 109.1 | C23—C26—H26B | 109.2 |
C7—C6—H6B | 109.1 | C27—C26—H26B | 109.2 |
H6A—C6—H6B | 107.9 | H26A—C26—H26B | 107.9 |
C8—C7—C12 | 118.6 (2) | C28—C27—C32 | 118.7 (2) |
C8—C7—C6 | 121.4 (2) | C28—C27—C26 | 121.2 (2) |
C12—C7—C6 | 120.0 (2) | C32—C27—C26 | 120.1 (2) |
C7—C8—C9 | 120.7 (2) | C27—C28—C29 | 120.6 (2) |
C7—C8—H8 | 119.7 | C27—C28—H28 | 119.7 |
C9—C8—H8 | 119.7 | C29—C28—H28 | 119.7 |
C10—C9—C8 | 120.5 (2) | C30—C29—C28 | 120.3 (2) |
C10—C9—H9 | 119.8 | C30—C29—H29 | 119.9 |
C8—C9—H9 | 119.8 | C28—C29—H29 | 119.9 |
C9—C10—C11 | 119.4 (2) | C29—C30—C31 | 119.4 (2) |
C9—C10—H10 | 120.3 | C29—C30—H30 | 120.3 |
C11—C10—H10 | 120.3 | C31—C30—H30 | 120.3 |
C10—C11—C12 | 120.3 (2) | C30—C31—C32 | 120.5 (2) |
C10—C11—H11 | 119.9 | C30—C31—H31 | 119.8 |
C12—C11—H11 | 119.9 | C32—C31—H31 | 119.8 |
C11—C12—C7 | 120.6 (2) | C31—C32—C27 | 120.6 (2) |
C11—C12—H12 | 119.7 | C31—C32—H32 | 119.7 |
C7—C12—H12 | 119.7 | C27—C32—H32 | 119.7 |
N1—C13—C14 | 107.44 (18) | N3—C33—C34 | 107.54 (18) |
N1—C13—C1 | 121.91 (17) | N3—C33—C21 | 121.77 (18) |
C14—C13—C1 | 130.59 (19) | C34—C33—C21 | 130.56 (19) |
C13—C14—C15 | 107.50 (19) | C33—C34—C35 | 107.30 (19) |
C13—C14—H14 | 126.3 | C33—C34—H34 | 126.3 |
C15—C14—H14 | 126.3 | C35—C34—H34 | 126.3 |
C16—C15—C14 | 107.19 (19) | C36—C35—C34 | 107.60 (19) |
C16—C15—H15 | 126.4 | C36—C35—H35 | 126.2 |
C14—C15—H15 | 126.4 | C34—C35—H35 | 126.2 |
N1—C16—C15 | 107.90 (19) | C35—C36—N3 | 107.62 (19) |
N1—C16—H16 | 126.0 | C35—C36—H36 | 126.2 |
C15—C16—H16 | 126.0 | N3—C36—H36 | 126.2 |
N2—C17—C18 | 107.57 (19) | N4—C37—C38 | 107.43 (19) |
N2—C17—C1 | 123.30 (17) | N4—C37—C21 | 123.56 (18) |
C18—C17—C1 | 129.1 (2) | C38—C37—C21 | 129.0 (2) |
C17—C18—C19 | 107.6 (2) | C37—C38—C39 | 107.6 (2) |
C17—C18—H18 | 126.2 | C37—C38—H38 | 126.2 |
C19—C18—H18 | 126.2 | C39—C38—H38 | 126.2 |
C20—C19—C18 | 107.31 (19) | C40—C39—C38 | 107.39 (19) |
C20—C19—H19 | 126.3 | C40—C39—H39 | 126.3 |
C18—C19—H19 | 126.3 | C38—C39—H39 | 126.3 |
N2—C20—C19 | 107.5 (2) | N4—C40—C39 | 107.89 (19) |
N2—C20—H20 | 126.2 | N4—C40—H40 | 126.1 |
C19—C20—H20 | 126.2 | C39—C40—H40 | 126.1 |
C17—C1—C2—C3 | 141.6 (2) | C37—C21—C22—C23 | −140.9 (2) |
C13—C1—C2—C3 | −90.2 (3) | C33—C21—C22—C23 | 91.1 (2) |
C17—C1—C2—S1 | −44.1 (2) | C37—C21—C22—S2 | 44.7 (2) |
C13—C1—C2—S1 | 84.15 (19) | C33—C21—C22—S2 | −83.3 (2) |
C5—S1—C2—C3 | 0.81 (17) | C25—S2—C22—C23 | −0.63 (17) |
C5—S1—C2—C1 | −174.41 (17) | C25—S2—C22—C21 | 174.56 (17) |
C1—C2—C3—C4 | 174.28 (19) | C21—C22—C23—C24 | −174.53 (19) |
S1—C2—C3—C4 | −0.5 (2) | S2—C22—C23—C24 | 0.3 (2) |
C1—C2—C3—C6 | −6.8 (3) | C21—C22—C23—C26 | 6.8 (3) |
S1—C2—C3—C6 | 178.40 (16) | S2—C22—C23—C26 | −178.37 (16) |
C2—C3—C4—C5 | −0.1 (3) | C22—C23—C24—C25 | 0.3 (3) |
C6—C3—C4—C5 | −179.1 (2) | C26—C23—C24—C25 | 179.0 (2) |
C3—C4—C5—S1 | 0.7 (2) | C23—C24—C25—S2 | −0.8 (2) |
C2—S1—C5—C4 | −0.88 (18) | C22—S2—C25—C24 | 0.80 (18) |
C2—C3—C6—C7 | −115.1 (2) | C22—C23—C26—C27 | 114.7 (2) |
C4—C3—C6—C7 | 63.7 (3) | C24—C23—C26—C27 | −63.9 (3) |
C3—C6—C7—C8 | −120.0 (2) | C23—C26—C27—C28 | 118.9 (2) |
C3—C6—C7—C12 | 60.1 (3) | C23—C26—C27—C32 | −60.9 (3) |
C12—C7—C8—C9 | −0.3 (3) | C32—C27—C28—C29 | 0.0 (3) |
C6—C7—C8—C9 | 179.8 (2) | C26—C27—C28—C29 | −179.7 (2) |
C7—C8—C9—C10 | 0.7 (3) | C27—C28—C29—C30 | −0.4 (3) |
C8—C9—C10—C11 | −0.6 (3) | C28—C29—C30—C31 | 0.3 (3) |
C9—C10—C11—C12 | 0.1 (3) | C29—C30—C31—C32 | 0.3 (3) |
C10—C11—C12—C7 | 0.3 (3) | C30—C31—C32—C27 | −0.6 (3) |
C8—C7—C12—C11 | −0.3 (3) | C28—C27—C32—C31 | 0.5 (3) |
C6—C7—C12—C11 | 179.67 (19) | C26—C27—C32—C31 | −179.75 (19) |
C16—N1—C13—C14 | 0.0 (2) | C36—N3—C33—C34 | 0.6 (2) |
C16—N1—C13—C1 | −177.46 (19) | C36—N3—C33—C21 | 176.96 (18) |
C17—C1—C13—N1 | −47.6 (2) | C37—C21—C33—N3 | 45.3 (3) |
C2—C1—C13—N1 | −176.43 (19) | C22—C21—C33—N3 | 174.30 (19) |
C17—C1—C13—C14 | 135.5 (2) | C37—C21—C33—C34 | −139.3 (2) |
C2—C1—C13—C14 | 6.7 (3) | C22—C21—C33—C34 | −10.3 (3) |
N1—C13—C14—C15 | 0.0 (2) | N3—C33—C34—C35 | −0.4 (3) |
C1—C13—C14—C15 | 177.2 (2) | C21—C33—C34—C35 | −176.2 (2) |
C13—C14—C15—C16 | 0.0 (3) | C33—C34—C35—C36 | 0.0 (3) |
C13—N1—C16—C15 | 0.0 (2) | C34—C35—C36—N3 | 0.4 (2) |
C14—C15—C16—N1 | 0.0 (3) | C33—N3—C36—C35 | −0.7 (2) |
C20—N2—C17—C18 | 0.4 (2) | C40—N4—C37—C38 | −0.1 (2) |
C20—N2—C17—C1 | −177.61 (18) | C40—N4—C37—C21 | 178.37 (19) |
C13—C1—C17—N2 | −55.8 (2) | C33—C21—C37—N4 | 58.7 (3) |
C2—C1—C17—N2 | 70.8 (3) | C22—C21—C37—N4 | −68.0 (3) |
C13—C1—C17—C18 | 126.7 (2) | C33—C21—C37—C38 | −123.2 (2) |
C2—C1—C17—C18 | −106.7 (2) | C22—C21—C37—C38 | 110.2 (2) |
N2—C17—C18—C19 | −0.3 (2) | N4—C37—C38—C39 | −0.1 (2) |
C1—C17—C18—C19 | 177.5 (2) | C21—C37—C38—C39 | −178.4 (2) |
C17—C18—C19—C20 | 0.2 (2) | C37—C38—C39—C40 | 0.2 (2) |
C17—N2—C20—C19 | −0.3 (2) | C37—N4—C40—C39 | 0.2 (2) |
C18—C19—C20—N2 | 0.1 (2) | C38—C39—C40—N4 | −0.2 (2) |
Cg1–8 are the centroids of the S1/C2–C5, N1/C13–C16, N2/C17–C20, C7–C12, S2/C22–C25, N3/C33–C36, N4/C37–C40 and C27–C32 rings, respectively. |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1N···N3 | 0.87 (3) | 2.61 (3) | 3.270 (3) | 134 (3) |
N4—H4N···S2 | 0.91 (3) | 2.86 (3) | 3.191 (2) | 103 (2) |
N1—-H1N···Cg6 | 0.87 (3) | 2.65 (3) | 3.300 (2) | 133 (3) |
N2—-H2N···Cg7 | 0.84 (3) | 2.53 (3) | 3.249 (2) | 145 (3) |
N3—-H3N···Cg3 | 0.87 (3) | 2.70 (3) | 3.335 (2) | 131 (3) |
N4—-H4N···Cg2 | 0.91 (3) | 2.51 (3) | 3.207 (2) | 134 (3) |
C5—-H5···Cg8i | 0.95 | 2.98 | 3.931 (3) | 177 |
C6—-H6B···Cg8ii | 0.99 | 2.79 | 3.697 (3) | 153 |
C10—-H10···Cg7iii | 0.95 | 2.86 | 3.544 (3) | 130 |
C11—-H11···Cg5iii | 0.95 | 2.98 | 3.874 (3) | 157 |
C25—-H25···Cg4iv | 0.95 | 2.98 | 3.924 (3) | 176 |
C26—-H26A···Cg4v | 0.99 | 2.77 | 3.684 (3) | 153 |
C30—-H30···Cg3vi | 0.95 | 2.88 | 3.585 (3) | 132 |
C31—-H31···Cg1vi | 0.95 | 2.97 | 3.863 (3) | 156 |
Symmetry codes: (i) y−1, −x+2, z+1/4; (ii) y, −x+1, z+1/4; (iii) y−1, −x+1, z+1/4; (iv) −y+2, x+1, z−1/4; (v) −y+1, x, z−1/4; (vi) −y+1, x+1, z−1/4. |
Contact | Distance | Symmetry operation |
C5···H18 | 3.01 | x, 1 + y, z |
H10···C40 | 3.01 | -1 + y, 1 - x, 1/4 + z |
H2N···C40 | 2.42 | x, y, z |
H4···C25 | 2.97 | -1 + y, 2 - x, 1/4 + z |
H1···C29 | 2.79 | y, 1 - x, 1/4 + z |
H15···H35 | 2.53 | x, 1 + y, z |
H16···H20 | 2.51 | 1 + x, y, z |
H16···H39 | 2.42 | 1 + x, y, z |
H19···H40 | 2.30 | 1 x, -1 + y, z |
H6A···H26B | 2.43 | y, 2 - x, 1/4 + z |
H15···H19 | 2.59 | 1 + x, 1 + y, z |
C25···H38 | 3.02 | 1 + x, y, z |
H35···H20 | 2.42 | 1 + x, y, z |
H36···H40 | 2.51 | x, -1 + y, z |
Acknowledgements
NDS and NAG thank Baku State University and Azerbaijan State Oil and Industry University, respectively, for financial support. ERS and DKP thank the Common Use Center "Physical and Chemical Research of New Materials, Substances and Catalytic Systems" RUDN. The authors' contributions are as follows. Conceptualization, MA and AB; synthesis, ERS, NAG and DKP; X-ray analysis, NDS, VNK, and ZA; writing (review and editing of the manuscript) MA and AB; funding acquisition, NDS, NAG, ERS and DKP; supervision, MA and AB.
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