AfCA collection
Synthesis and
of the adduct between 2-pyridylselenyl chloride and isobutyronitrileaDepartment of Chemistry, College of Natural and Computational Science, University of Gondar, Gondar 196, Ethiopia, bPeoples' Friendship University of Russia, 6 Miklukho-Maklaya Street, Moscow, 117198, Russian Federation, cKurnakov Institute of General and Inorganic Chemistry, Russian Academy of Sciences, Leninsky Prosp. 31, 119071 Moscow, Russian Federation, dInstitute of Chemistry, Saint Petersburg State University, Universitetskaya Nab. 7/9, 199034 Saint Petersburg, Russian Federation, and eUniversity of Science, Vietnam National University, Hanoi, 334 Nguyen Trai, Thanh Xuan, Hanoi, 100000, Vietnam
*Correspondence e-mail: Wodajo.Ayalew@uog.edu.et
This article is part of a collection of articles to commemorate the founding of the African Crystallographic Association and the 75th anniversary of the IUCr.
The reaction between 2-pyridylselenenyl chloride and isobutyronitrile results in the formation of the corresponding cationic pyridinium-fused 1,2,4-selenodiazole, namely, 3-(propan-2-yl)-1,2,4-[1,2,4]selenadiazolo[4,5-a]pyridin-4-ylium chloride, C9H11N2Se+·Cl−, in high yield (89%). The structure of the compound, established by means of single-crystal X-ray analysis at 100 K, has monoclinic (P21/c) symmetry and revealed the presence of bifurcated chalcogen-hydrogen bonding Se⋯Cl−⋯H—Cl, and these non-covalent contacts were analysed by DFT calculations followed by a topological analysis of the electron-density distribution (ωB97XD/6-311++G** level of theory).
CCDC reference: 2328546
1. Chemical context
Recently, we discovered a novel cycloaddition reaction between et al., 2023; Khrustalev et al., 2021). Importantly, the reaction proceeds under mild conditions with high and results in the formation of pyridinium-fused selenodiazolium salts in high yields. The Se centre in these systems acts as a chalcogen bond donor and provides two σ-holes (Grudova et al., 2022a,b). The 1,2,4-selenodiazolium salts were shown to form supramolecular dimers via four-center Se⋯X (X = Hal, N) chalcogen-bonding interactions (Grudova et al., 2022a,b). In some instances, other types of supramolecular organization were observed, depending on the nitrile employed in the cycloaddition reaction (Grudova et al., 2022a,b; Sapronov et al., 2022, 2023; Artemjev et al., 2022; Buslov et al., 2021).
and 2-pyridylselenyl reagents (ArtemjevHere we report the preparation and structural characterization of a cationic pyridinium-fused 1,2,4-selenodiazole, which was prepared via reaction of 2-pyridylselenenyl chloride with isobutyronitrile (reagent ratio of 1:1). The reaction was carried out under stirring at room temperature in CH2Cl2/Et2O over 24 h, which led to the formation of a white suspension. Isolation and purification gave a crystalline solid of the target compound in a yield of 89%.
2. Structural commentary
The title compound (Fig. 1) crystallized in P21/c with four cations and four Cl− anions in the The four cations exhibit identical bond distances and angles, except for the dihedral angle of the isopropyl substituent [N—C—C—C torsion angles are in the range −15.9 (12) to 17.7 (11)°]. The 1,2,4-selenodiazole fragments are almost planar (r.m.s.d. = 0.008–0.014 Å). The Se⋯Cl distances lie in the range 2.901 (3) – 2.956 (3) Å.
Interestingly, the novel 1,2,4-selenodiazole did not form supramolecular dimers via Se⋯N contacts.
3. Supramolecular features and QTAIM analysis
The crystal packing is shown in Fig. 2. The molecules of the title compound are packed in layers parallel to the ac plane. Each row of 1,2,4-selenodiazolium salts in the layer is located antiparallel to the adjacent one. In addition to Se⋯Cl− contacts (Table 1), the anions form C—H⋯Cl− contacts (Table 2) that link the cations and anions both within the layers and between them.
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A Hirshfeld surface analysis was performed to investigate which interatomic contacts make the largest contributions to the crystal packing. Fig. 3 shows the Hirshfeld surface mapped over dnorm where the region of the short intermolecular Se⋯Cl contact is indicated by an intense red spot. The contributions of the different interatomic contacts to the Hirshfeld surface are H⋯H (47.0%), Se⋯H (10.5%), Cl⋯H (10.4%), C⋯H (10.1%), N⋯H (8.5%), Se⋯C (4.5%), Se⋯Cl (2.7%), Cl⋯C (1.8%), Se⋯N (1.6%), Cl⋯N (1.3%), N⋯C (1.0%), N⋯N (0.5%), and C⋯C (0.1%). Thus, the Hirshfeld surface analysis for the reveals that crystal packing is determined primarily by intermolecular contacts involving hydrogen atoms.
Interestingly, the title compound did not form supramolecular dimers via Se⋯N contacts. To obtain a deeper understanding of the nature and quantify the strength of the bifurcated Se⋯Cl−⋯H—C chalcogen-hydrogen bonding in the title compound, single-point DFT calculations based on the experimental X-ray geometry were performed at the B97XD/6-311++G** level of theory using the dispersion-corrected hybrid functional ωB97XD using GAUSSIAN09 (Frisch et al., 2009) with the 6-311++G** basis sets used for all atoms, followed by a topological analysis of the electron-density distribution.
A QTAIM analysis of the model structure demonstrates the presence of bond critical points (3, −1) for short contacts Se⋯Cl− and C—H⋯Cl− in the formed 1,2,4-selenodiazole (Table 3 and Fig. 4). The low magnitude of the electron density, positive values of the Laplacian of the electron density and zero or very close to zero values of energy density in these bond critical points (3, −1) and estimated strength for appropriate short contacts are typical for weak, purely non-covalent interactions (Espinosa et al., 2002). Note that the nature of the discussed non-covalent contacts are similar to those weak interactions in closely related chemical systems (Grudova et al., 2022a,b).
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4. Database survey
A search in the Cambridge Structural Database (CSD, Version 5.43, update of Sep. 2022; Groom et al., 2016) gave only 16 hits for 1,2,4-selenodiazolium salts. These salts differ not only in the type of nitrile fragment [Me (EWEPUU; Khrustalev et al., 2021), Ph (NAQDES; Buslov et al., 2021), BrC6H4 (EWEQEF; Khrustalev et al., 2021)], but also in the CF3COO− anion (YEJXEU; Artemjev et al., 2022), AuCl4− (YEJXUK; Artemjev et al., 2022), ReO4− (YEJYAR; Artemjev et al., 2022).
5. Synthesis and crystallization
General remarks. All manipulations were carried out in air and all reagents used in this study were obtained from commercial sources (Aldrich, TCI-Europe, Strem, ABCR). Commercially available solvents were purified by conventional methods and distilled immediately prior to use. NMR spectra were recorded on a Bruker Avance III (1H: 400 MHz); chemical shifts (δ) are given in ppm, coupling constants (J) in Hz. 2-Pyridylselenyl chloride was synthesized by our method (Artemjev et al., 2023; Khrustalev et al., 2021). Isobutyronitrile (81 µmol, 5.6 mg) was added to a suspension of 2-pyridylselenyl chloride (81 µmol, 15.5 mg) in CH2Cl2/Et2O (1/1, 4 mL), and the mixture was stirred at room temperature for 24 h. The formed colorless precipitate was filtered, washed with Et2O (3 × 1 mL) and dried under vacuum. Yield 18.8 mg (89%), colorless blocks. 1H NMR (400 MHz, chloroform-d) δ 8.48 (d, J = 4.8 Hz, 1H), 7.83 (d, J = 7.9 Hz, 1H), 7.58 (td, J = 7.8 Hz, 1H), 7.12 (td, J = 7.5 Hz, 1H), 2.70 (hept, J = 7.0 Hz, 1H), 1.33 (d, J = 7.0 Hz, 6H). Crystals suitable for X-ray analysis were obtained by the slow evaporation of a CH2Cl2 solution.
6. Refinement
Crystal data, data collection and structure . H atoms were positioned geometrically (C—H = 0.95–1.00 Å) and refined as riding with Uiso(H) = 1.2–1.5Ueq(C). The remaining positive and negative residual electron density close to the Se1, Se2, Se3 and Se4 atom positions (1.71 Å−3 at 0.94 Å from Se4, 1.67 Å−3 at 1.05 Å from Se2, 1.58 Å−3 at 1.03 Å from Se3, 1.54 Å−3 at 1.06 Å from Se4 and −1.53 Å−3 at 1.06 Å from Se4) suggests the possible presence of a small twin component as well.
details are summarized in Table 4
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Supporting information
CCDC reference: 2328546
https://doi.org/10.1107/S2056989024000938/ex2079sup1.cif
contains datablock I. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S2056989024000938/ex2079Isup2.hkl
Fingerprint plots. DOI: https://doi.org/10.1107/S2056989024000938/ex2079sup3.zip
C9H11N2Se+·Cl− | F(000) = 2080 |
Mr = 261.61 | Dx = 1.657 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
a = 9.054 (11) Å | Cell parameters from 5157 reflections |
b = 15.015 (15) Å | θ = 2.5–27.0° |
c = 30.93 (3) Å | µ = 3.79 mm−1 |
β = 94.10 (3)° | T = 100 K |
V = 4194 (8) Å3 | Block, colourless |
Z = 16 | 0.2 × 0.2 × 0.1 mm |
Bruker D8 Venture diffractometer | 6328 reflections with I > 2σ(I) |
φ and ω scans | Rint = 0.092 |
Absorption correction: multi-scan (SADABS; Krause et al., 2015) | θmax = 27.5°, θmin = 1.5° |
Tmin = 0.499, Tmax = 0.746 | h = −11→10 |
25216 measured reflections | k = −17→19 |
9604 independent reflections | l = −34→40 |
Refinement on F2 | 0 restraints |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.080 | H-atom parameters constrained |
wR(F2) = 0.192 | w = 1/[σ2(Fo2) + (0.0572P)2 + 24.4862P] where P = (Fo2 + 2Fc2)/3 |
S = 1.10 | (Δ/σ)max < 0.001 |
9604 reflections | Δρmax = 1.77 e Å−3 |
477 parameters | Δρmin = −1.49 e Å−3 |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
x | y | z | Uiso*/Ueq | ||
Se1 | 0.47831 (10) | 0.56571 (5) | 0.44129 (3) | 0.0188 (2) | |
N1 | 0.2029 (8) | 0.5041 (4) | 0.4321 (2) | 0.0158 (14) | |
N2 | 0.3169 (8) | 0.6405 (4) | 0.4298 (2) | 0.0208 (15) | |
C1 | 0.3415 (9) | 0.4706 (5) | 0.4407 (2) | 0.0157 (16) | |
C2 | 0.3662 (10) | 0.3806 (5) | 0.4468 (2) | 0.0215 (19) | |
H2 | 0.463568 | 0.358285 | 0.452949 | 0.026* | |
C3 | 0.2475 (10) | 0.3244 (5) | 0.4437 (3) | 0.0225 (19) | |
H3 | 0.262519 | 0.262247 | 0.447472 | 0.027* | |
C4 | 0.1014 (10) | 0.3578 (5) | 0.4348 (3) | 0.0231 (19) | |
H4 | 0.019521 | 0.318133 | 0.432535 | 0.028* | |
C5 | 0.0794 (10) | 0.4484 (5) | 0.4294 (3) | 0.0226 (18) | |
H5 | −0.017461 | 0.472085 | 0.423951 | 0.027* | |
C6 | 0.1954 (10) | 0.5998 (5) | 0.4265 (3) | 0.0182 (17) | |
C7 | 0.0449 (10) | 0.6424 (5) | 0.4148 (3) | 0.0228 (19) | |
H7 | −0.006834 | 0.606091 | 0.391248 | 0.027* | |
C8 | −0.0552 (10) | 0.6457 (6) | 0.4531 (3) | 0.029 (2) | |
H8A | −0.059140 | 0.586592 | 0.466403 | 0.043* | |
H8B | −0.155223 | 0.664066 | 0.442583 | 0.043* | |
H8C | −0.014747 | 0.688650 | 0.474718 | 0.043* | |
C9 | 0.0689 (12) | 0.7371 (6) | 0.3968 (3) | 0.037 (2) | |
H9A | 0.112941 | 0.775243 | 0.420018 | 0.055* | |
H9B | −0.026482 | 0.762078 | 0.385810 | 0.055* | |
H9C | 0.135472 | 0.733964 | 0.373246 | 0.055* | |
Se2 | 0.99777 (10) | 0.98507 (5) | 0.43039 (3) | 0.0206 (2) | |
N3 | 0.7271 (7) | 1.0382 (4) | 0.4473 (2) | 0.0155 (14) | |
N4 | 0.8305 (9) | 0.9161 (4) | 0.4154 (2) | 0.0240 (16) | |
C10 | 0.8686 (10) | 1.0696 (5) | 0.4521 (2) | 0.0201 (17) | |
C11 | 0.9007 (10) | 1.1530 (5) | 0.4712 (3) | 0.0224 (18) | |
H11 | 0.999354 | 1.174702 | 0.474969 | 0.027* | |
C12 | 0.7821 (10) | 1.2025 (5) | 0.4842 (3) | 0.0223 (18) | |
H12 | 0.799270 | 1.260398 | 0.495885 | 0.027* | |
C13 | 0.6357 (10) | 1.1680 (5) | 0.4805 (3) | 0.0204 (18) | |
H13 | 0.556089 | 1.201547 | 0.490621 | 0.024* | |
C14 | 0.6109 (10) | 1.0862 (5) | 0.4623 (3) | 0.0217 (18) | |
H14 | 0.513573 | 1.062152 | 0.459912 | 0.026* | |
C15 | 0.7132 (10) | 0.9517 (5) | 0.4276 (3) | 0.0217 (18) | |
C16 | 0.5614 (10) | 0.9090 (5) | 0.4235 (3) | 0.0244 (19) | |
H16 | 0.515032 | 0.917789 | 0.451551 | 0.029* | |
C17 | 0.5773 (12) | 0.8075 (6) | 0.4161 (4) | 0.043 (3) | |
H17A | 0.631217 | 0.797054 | 0.390244 | 0.065* | |
H17B | 0.478756 | 0.780391 | 0.412147 | 0.065* | |
H17C | 0.631904 | 0.780693 | 0.441382 | 0.065* | |
C18 | 0.4603 (12) | 0.9510 (6) | 0.3879 (3) | 0.034 (2) | |
H18A | 0.468793 | 1.015964 | 0.389582 | 0.051* | |
H18B | 0.357698 | 0.933378 | 0.391448 | 0.051* | |
H18C | 0.489245 | 0.930671 | 0.359565 | 0.051* | |
Se3 | 0.26260 (10) | 0.42116 (5) | 0.32555 (3) | 0.01773 (19) | |
N5 | 0.5420 (8) | 0.4775 (4) | 0.3319 (2) | 0.0199 (15) | |
N6 | 0.4195 (9) | 0.3446 (4) | 0.3392 (2) | 0.0226 (16) | |
C19 | 0.4032 (9) | 0.5118 (5) | 0.3232 (3) | 0.0178 (16) | |
C20 | 0.3850 (10) | 0.6028 (5) | 0.3142 (3) | 0.0198 (17) | |
H20 | 0.288959 | 0.626641 | 0.307443 | 0.024* | |
C21 | 0.5068 (10) | 0.6569 (5) | 0.3152 (3) | 0.0232 (19) | |
H21 | 0.495070 | 0.718889 | 0.309785 | 0.028* | |
C22 | 0.6498 (11) | 0.6212 (6) | 0.3244 (3) | 0.027 (2) | |
H22 | 0.734293 | 0.658728 | 0.324740 | 0.033* | |
C23 | 0.6658 (10) | 0.5327 (5) | 0.3327 (3) | 0.0218 (18) | |
H23 | 0.761829 | 0.508431 | 0.339056 | 0.026* | |
C24 | 0.5435 (10) | 0.3829 (5) | 0.3405 (3) | 0.0193 (17) | |
C25 | 0.6916 (10) | 0.3370 (6) | 0.3495 (3) | 0.026 (2) | |
H25 | 0.754221 | 0.373184 | 0.370862 | 0.031* | |
C26 | 0.7723 (11) | 0.3267 (6) | 0.3083 (3) | 0.030 (2) | |
H26A | 0.707544 | 0.296467 | 0.286124 | 0.045* | |
H26B | 0.862308 | 0.291312 | 0.314442 | 0.045* | |
H26C | 0.798948 | 0.385609 | 0.297642 | 0.045* | |
C27 | 0.6644 (12) | 0.2436 (6) | 0.3695 (3) | 0.034 (2) | |
H27A | 0.595387 | 0.209768 | 0.349877 | 0.050* | |
H27B | 0.622106 | 0.250876 | 0.397530 | 0.050* | |
H27C | 0.758506 | 0.211384 | 0.373494 | 0.050* | |
Se4 | 1.25396 (10) | 0.52189 (5) | 0.20254 (3) | 0.0204 (2) | |
N7 | 0.9756 (8) | 0.4644 (4) | 0.1977 (2) | 0.0195 (15) | |
N8 | 1.0966 (8) | 0.5971 (4) | 0.1871 (2) | 0.0213 (15) | |
C28 | 1.1139 (9) | 0.4318 (5) | 0.2066 (3) | 0.0187 (17) | |
C29 | 1.1317 (10) | 0.3407 (5) | 0.2175 (3) | 0.0226 (19) | |
H29 | 1.227441 | 0.316755 | 0.224650 | 0.027* | |
C30 | 1.0089 (11) | 0.2875 (5) | 0.2175 (3) | 0.025 (2) | |
H30 | 1.020121 | 0.225748 | 0.223666 | 0.030* | |
C31 | 0.8675 (10) | 0.3229 (6) | 0.2085 (3) | 0.0253 (19) | |
H31 | 0.782837 | 0.285610 | 0.209118 | 0.030* | |
C32 | 0.8512 (9) | 0.4109 (5) | 0.1990 (3) | 0.0201 (17) | |
H32 | 0.755249 | 0.435634 | 0.193195 | 0.024* | |
C33 | 0.9714 (10) | 0.5569 (5) | 0.1863 (2) | 0.0205 (18) | |
C34 | 0.8239 (10) | 0.6012 (5) | 0.1729 (3) | 0.0220 (18) | |
H34 | 0.766938 | 0.559546 | 0.152766 | 0.026* | |
C35 | 0.7292 (10) | 0.6186 (6) | 0.2117 (3) | 0.027 (2) | |
H35A | 0.783686 | 0.657512 | 0.232708 | 0.040* | |
H35B | 0.707740 | 0.561863 | 0.225694 | 0.040* | |
H35C | 0.636091 | 0.647310 | 0.201416 | 0.040* | |
C36 | 0.8505 (10) | 0.6869 (5) | 0.1477 (3) | 0.028 (2) | |
H36A | 0.755127 | 0.712260 | 0.136934 | 0.042* | |
H36B | 0.909601 | 0.673383 | 0.123245 | 0.042* | |
H36C | 0.903625 | 0.729918 | 0.166944 | 0.042* | |
Cl1 | 0.7227 (2) | 0.43621 (13) | 0.45609 (7) | 0.0235 (4) | |
Cl2 | 1.2466 (2) | 1.08940 (12) | 0.46641 (7) | 0.0237 (4) | |
Cl3 | 0.0233 (2) | 0.54927 (12) | 0.30482 (7) | 0.0218 (4) | |
Cl4 | 1.4889 (2) | 0.39388 (13) | 0.22603 (7) | 0.0227 (4) |
U11 | U22 | U33 | U12 | U13 | U23 | |
Se1 | 0.0212 (5) | 0.0144 (4) | 0.0206 (4) | −0.0026 (3) | −0.0009 (3) | −0.0022 (3) |
N1 | 0.020 (4) | 0.016 (3) | 0.011 (3) | 0.000 (3) | −0.001 (3) | −0.002 (2) |
N2 | 0.030 (4) | 0.016 (3) | 0.016 (4) | 0.000 (3) | −0.003 (3) | −0.005 (3) |
C1 | 0.017 (4) | 0.019 (4) | 0.010 (4) | −0.003 (3) | 0.000 (3) | −0.003 (3) |
C2 | 0.033 (5) | 0.019 (4) | 0.012 (4) | 0.000 (4) | −0.004 (4) | 0.001 (3) |
C3 | 0.031 (5) | 0.018 (4) | 0.018 (4) | −0.008 (4) | 0.001 (4) | −0.003 (3) |
C4 | 0.025 (5) | 0.019 (4) | 0.025 (5) | −0.003 (4) | −0.001 (4) | −0.003 (3) |
C5 | 0.018 (5) | 0.029 (4) | 0.020 (4) | −0.001 (4) | −0.001 (3) | −0.002 (3) |
C6 | 0.024 (5) | 0.011 (3) | 0.019 (4) | 0.003 (3) | −0.003 (3) | −0.001 (3) |
C7 | 0.022 (5) | 0.025 (4) | 0.020 (4) | 0.008 (4) | −0.004 (4) | 0.001 (3) |
C8 | 0.023 (5) | 0.025 (4) | 0.039 (6) | 0.002 (4) | 0.009 (4) | −0.005 (4) |
C9 | 0.042 (7) | 0.036 (5) | 0.032 (6) | 0.015 (5) | 0.001 (5) | 0.007 (4) |
Se2 | 0.0193 (5) | 0.0179 (4) | 0.0244 (5) | 0.0017 (3) | −0.0002 (3) | −0.0009 (3) |
N3 | 0.013 (3) | 0.016 (3) | 0.018 (4) | 0.004 (3) | −0.001 (3) | −0.002 (2) |
N4 | 0.030 (4) | 0.019 (3) | 0.023 (4) | 0.003 (3) | −0.003 (3) | −0.003 (3) |
C10 | 0.027 (5) | 0.022 (4) | 0.010 (4) | 0.001 (4) | −0.004 (3) | 0.004 (3) |
C11 | 0.026 (5) | 0.023 (4) | 0.018 (4) | −0.007 (4) | −0.006 (4) | 0.002 (3) |
C12 | 0.023 (5) | 0.020 (4) | 0.023 (5) | −0.001 (4) | 0.000 (4) | 0.000 (3) |
C13 | 0.020 (5) | 0.021 (4) | 0.021 (4) | 0.006 (3) | 0.000 (3) | −0.001 (3) |
C14 | 0.018 (4) | 0.018 (4) | 0.029 (5) | 0.002 (3) | 0.001 (4) | 0.003 (3) |
C15 | 0.032 (5) | 0.017 (4) | 0.015 (4) | −0.002 (4) | −0.007 (4) | 0.002 (3) |
C16 | 0.021 (5) | 0.026 (4) | 0.025 (5) | −0.005 (4) | 0.001 (4) | −0.001 (3) |
C17 | 0.039 (7) | 0.032 (5) | 0.058 (8) | −0.010 (5) | −0.003 (5) | −0.009 (5) |
C18 | 0.038 (6) | 0.041 (5) | 0.022 (5) | −0.005 (5) | −0.006 (4) | −0.007 (4) |
Se3 | 0.0200 (4) | 0.0133 (4) | 0.0197 (4) | −0.0013 (3) | −0.0001 (3) | −0.0003 (3) |
N5 | 0.021 (4) | 0.023 (3) | 0.016 (4) | 0.002 (3) | −0.002 (3) | −0.003 (3) |
N6 | 0.032 (5) | 0.016 (3) | 0.020 (4) | 0.000 (3) | 0.002 (3) | 0.001 (3) |
C19 | 0.018 (4) | 0.017 (4) | 0.019 (4) | 0.005 (3) | 0.003 (3) | 0.000 (3) |
C20 | 0.024 (5) | 0.013 (4) | 0.023 (4) | 0.001 (3) | −0.001 (3) | 0.000 (3) |
C21 | 0.025 (5) | 0.014 (4) | 0.030 (5) | 0.001 (3) | −0.002 (4) | −0.001 (3) |
C22 | 0.029 (5) | 0.025 (4) | 0.028 (5) | −0.010 (4) | −0.001 (4) | −0.001 (4) |
C23 | 0.015 (4) | 0.024 (4) | 0.027 (5) | 0.000 (3) | 0.001 (3) | −0.002 (3) |
C24 | 0.027 (5) | 0.015 (4) | 0.016 (4) | 0.005 (3) | −0.003 (3) | −0.001 (3) |
C25 | 0.023 (5) | 0.026 (4) | 0.028 (5) | 0.002 (4) | −0.004 (4) | 0.003 (3) |
C26 | 0.027 (6) | 0.032 (5) | 0.031 (5) | 0.011 (4) | 0.003 (4) | −0.002 (4) |
C27 | 0.039 (6) | 0.026 (5) | 0.035 (6) | 0.010 (4) | 0.004 (5) | 0.009 (4) |
Se4 | 0.0192 (5) | 0.0170 (4) | 0.0246 (5) | −0.0007 (3) | −0.0022 (3) | 0.0011 (3) |
N7 | 0.024 (4) | 0.015 (3) | 0.018 (4) | −0.003 (3) | −0.003 (3) | −0.003 (3) |
N8 | 0.018 (4) | 0.015 (3) | 0.031 (4) | 0.005 (3) | 0.000 (3) | 0.007 (3) |
C28 | 0.019 (4) | 0.019 (4) | 0.018 (4) | 0.001 (3) | −0.003 (3) | −0.005 (3) |
C29 | 0.024 (5) | 0.018 (4) | 0.023 (5) | 0.003 (3) | −0.011 (4) | 0.000 (3) |
C30 | 0.034 (6) | 0.019 (4) | 0.022 (5) | 0.003 (4) | −0.007 (4) | 0.001 (3) |
C31 | 0.021 (5) | 0.026 (4) | 0.028 (5) | −0.009 (4) | −0.001 (4) | −0.004 (3) |
C32 | 0.013 (4) | 0.025 (4) | 0.023 (5) | 0.000 (3) | −0.001 (3) | −0.006 (3) |
C33 | 0.036 (5) | 0.012 (4) | 0.012 (4) | −0.007 (3) | −0.002 (4) | 0.002 (3) |
C34 | 0.025 (5) | 0.023 (4) | 0.016 (4) | 0.003 (4) | −0.007 (4) | −0.001 (3) |
C35 | 0.022 (5) | 0.024 (4) | 0.034 (5) | 0.004 (4) | 0.000 (4) | −0.004 (4) |
C36 | 0.026 (5) | 0.018 (4) | 0.038 (6) | 0.008 (4) | −0.008 (4) | 0.004 (3) |
Cl1 | 0.0217 (11) | 0.0213 (10) | 0.0273 (11) | 0.0000 (8) | 0.0012 (8) | −0.0019 (8) |
Cl2 | 0.0184 (11) | 0.0191 (9) | 0.0332 (12) | 0.0000 (8) | −0.0020 (9) | 0.0056 (8) |
Cl3 | 0.0191 (11) | 0.0183 (9) | 0.0278 (11) | 0.0021 (8) | −0.0001 (8) | −0.0026 (7) |
Cl4 | 0.0197 (11) | 0.0264 (10) | 0.0216 (11) | 0.0025 (8) | −0.0005 (8) | 0.0008 (8) |
Se1—N2 | 1.857 (7) | Se3—N6 | 1.853 (7) |
Se1—C1 | 1.890 (8) | Se3—C19 | 1.868 (8) |
N1—C1 | 1.360 (10) | N5—C19 | 1.367 (10) |
N1—C5 | 1.394 (10) | N5—C23 | 1.393 (11) |
N1—C6 | 1.448 (9) | N5—C24 | 1.444 (10) |
N2—C6 | 1.256 (11) | N6—C24 | 1.260 (11) |
C1—C2 | 1.381 (11) | C19—C20 | 1.402 (10) |
C2—H2 | 0.9500 | C20—H20 | 0.9500 |
C2—C3 | 1.364 (12) | C20—C21 | 1.369 (12) |
C3—H3 | 0.9500 | C21—H21 | 0.9500 |
C3—C4 | 1.422 (12) | C21—C22 | 1.411 (12) |
C4—H4 | 0.9500 | C22—H22 | 0.9500 |
C4—C5 | 1.383 (11) | C22—C23 | 1.359 (11) |
C5—H5 | 0.9500 | C23—H23 | 0.9500 |
C6—C7 | 1.526 (11) | C24—C25 | 1.516 (12) |
C7—H7 | 1.0000 | C25—H25 | 1.0000 |
C7—C8 | 1.542 (12) | C25—C26 | 1.523 (12) |
C7—C9 | 1.549 (12) | C25—C27 | 1.559 (12) |
C8—H8A | 0.9800 | C26—H26A | 0.9800 |
C8—H8B | 0.9800 | C26—H26B | 0.9800 |
C8—H8C | 0.9800 | C26—H26C | 0.9800 |
C9—H9A | 0.9800 | C27—H27A | 0.9800 |
C9—H9B | 0.9800 | C27—H27B | 0.9800 |
C9—H9C | 0.9800 | C27—H27C | 0.9800 |
Se2—N4 | 1.866 (8) | Se4—N8 | 1.854 (7) |
Se2—C10 | 1.882 (8) | Se4—C28 | 1.865 (8) |
N3—C10 | 1.363 (11) | N7—C28 | 1.354 (11) |
N3—C14 | 1.383 (10) | N7—C32 | 1.386 (10) |
N3—C15 | 1.437 (10) | N7—C33 | 1.433 (9) |
N4—C15 | 1.270 (11) | N8—C33 | 1.283 (11) |
C10—C11 | 1.407 (11) | C28—C29 | 1.415 (11) |
C11—H11 | 0.9500 | C29—H29 | 0.9500 |
C11—C12 | 1.389 (12) | C29—C30 | 1.369 (12) |
C12—H12 | 0.9500 | C30—H30 | 0.9500 |
C12—C13 | 1.420 (12) | C30—C31 | 1.396 (12) |
C13—H13 | 0.9500 | C31—H31 | 0.9500 |
C13—C14 | 1.364 (11) | C31—C32 | 1.361 (11) |
C14—H14 | 0.9500 | C32—H32 | 0.9500 |
C15—C16 | 1.513 (12) | C33—C34 | 1.522 (12) |
C16—H16 | 1.0000 | C34—H34 | 1.0000 |
C16—C17 | 1.550 (12) | C34—C35 | 1.546 (12) |
C16—C18 | 1.518 (12) | C34—C36 | 1.533 (11) |
C17—H17A | 0.9800 | C35—H35A | 0.9800 |
C17—H17B | 0.9800 | C35—H35B | 0.9800 |
C17—H17C | 0.9800 | C35—H35C | 0.9800 |
C18—H18A | 0.9800 | C36—H36A | 0.9800 |
C18—H18B | 0.9800 | C36—H36B | 0.9800 |
C18—H18C | 0.9800 | C36—H36C | 0.9800 |
Se1···Cl1 | 2.957 (4) | Se3···Cl3 | 2.934 (4) |
Se1···N1 | 2.656 (8) | Se3···N5 | 2.661 (8) |
Se2···Cl2 | 2.900 (4) | Se4···Cl4 | 2.920 (4) |
Se2···N3 | 2.664 (7) | Se4···N7 | 2.658 (8) |
N2—Se1—C1 | 87.0 (3) | N6—Se3—C19 | 87.0 (3) |
C1—N1—C5 | 121.0 (7) | C19—N5—C23 | 120.4 (7) |
C1—N1—C6 | 115.1 (7) | C19—N5—C24 | 113.8 (7) |
C5—N1—C6 | 123.9 (7) | C23—N5—C24 | 125.8 (7) |
C6—N2—Se1 | 113.2 (5) | C24—N6—Se3 | 113.0 (5) |
N1—C1—Se1 | 108.5 (5) | N5—C19—Se3 | 109.7 (5) |
N1—C1—C2 | 121.8 (7) | N5—C19—C20 | 120.0 (8) |
C2—C1—Se1 | 129.7 (7) | C20—C19—Se3 | 130.3 (7) |
C1—C2—H2 | 120.8 | C19—C20—H20 | 120.3 |
C3—C2—C1 | 118.5 (8) | C21—C20—C19 | 119.4 (8) |
C3—C2—H2 | 120.8 | C21—C20—H20 | 120.3 |
C2—C3—H3 | 119.6 | C20—C21—H21 | 119.9 |
C2—C3—C4 | 120.8 (8) | C20—C21—C22 | 120.3 (7) |
C4—C3—H3 | 119.6 | C22—C21—H21 | 119.9 |
C3—C4—H4 | 120.2 | C21—C22—H22 | 120.2 |
C5—C4—C3 | 119.6 (8) | C23—C22—C21 | 119.6 (8) |
C5—C4—H4 | 120.2 | C23—C22—H22 | 120.2 |
N1—C5—H5 | 120.8 | N5—C23—H23 | 119.9 |
C4—C5—N1 | 118.3 (8) | C22—C23—N5 | 120.2 (8) |
C4—C5—H5 | 120.8 | C22—C23—H23 | 119.9 |
N1—C6—C7 | 118.5 (7) | N5—C24—C25 | 118.5 (7) |
N2—C6—N1 | 116.1 (7) | N6—C24—N5 | 116.5 (7) |
N2—C6—C7 | 125.3 (7) | N6—C24—C25 | 124.9 (7) |
C6—C7—H7 | 108.0 | C24—C25—H25 | 109.0 |
C6—C7—C8 | 113.3 (7) | C24—C25—C26 | 111.3 (7) |
C6—C7—C9 | 108.9 (7) | C24—C25—C27 | 108.6 (8) |
C8—C7—H7 | 108.0 | C26—C25—H25 | 109.0 |
C8—C7—C9 | 110.6 (7) | C26—C25—C27 | 109.8 (7) |
C9—C7—H7 | 108.0 | C27—C25—H25 | 109.0 |
C7—C8—H8A | 109.5 | C25—C26—H26A | 109.5 |
C7—C8—H8B | 109.5 | C25—C26—H26B | 109.5 |
C7—C8—H8C | 109.5 | C25—C26—H26C | 109.5 |
H8A—C8—H8B | 109.5 | H26A—C26—H26B | 109.5 |
H8A—C8—H8C | 109.5 | H26A—C26—H26C | 109.5 |
H8B—C8—H8C | 109.5 | H26B—C26—H26C | 109.5 |
C7—C9—H9A | 109.5 | C25—C27—H27A | 109.5 |
C7—C9—H9B | 109.5 | C25—C27—H27B | 109.5 |
C7—C9—H9C | 109.5 | C25—C27—H27C | 109.5 |
H9A—C9—H9B | 109.5 | H27A—C27—H27B | 109.5 |
H9A—C9—H9C | 109.5 | H27A—C27—H27C | 109.5 |
H9B—C9—H9C | 109.5 | H27B—C27—H27C | 109.5 |
N4—Se2—C10 | 87.0 (4) | N8—Se4—C28 | 86.9 (3) |
C10—N3—C14 | 121.0 (7) | C28—N7—C32 | 121.7 (7) |
C10—N3—C15 | 114.3 (7) | C28—N7—C33 | 114.2 (7) |
C14—N3—C15 | 124.6 (7) | C32—N7—C33 | 124.1 (7) |
C15—N4—Se2 | 112.0 (6) | C33—N8—Se4 | 112.3 (5) |
N3—C10—Se2 | 109.3 (5) | N7—C28—Se4 | 110.3 (5) |
N3—C10—C11 | 121.2 (8) | N7—C28—C29 | 119.1 (7) |
C11—C10—Se2 | 129.4 (7) | C29—C28—Se4 | 130.6 (7) |
C10—C11—H11 | 121.4 | C28—C29—H29 | 120.5 |
C12—C11—C10 | 117.2 (8) | C30—C29—C28 | 119.1 (8) |
C12—C11—H11 | 121.4 | C30—C29—H29 | 120.5 |
C11—C12—H12 | 119.4 | C29—C30—H30 | 119.6 |
C11—C12—C13 | 121.2 (8) | C29—C30—C31 | 120.7 (8) |
C13—C12—H12 | 119.4 | C31—C30—H30 | 119.6 |
C12—C13—H13 | 120.4 | C30—C31—H31 | 120.1 |
C14—C13—C12 | 119.1 (8) | C32—C31—C30 | 119.8 (8) |
C14—C13—H13 | 120.4 | C32—C31—H31 | 120.1 |
N3—C14—H14 | 120.0 | N7—C32—H32 | 120.2 |
C13—C14—N3 | 120.1 (8) | C31—C32—N7 | 119.6 (8) |
C13—C14—H14 | 120.0 | C31—C32—H32 | 120.2 |
N3—C15—C16 | 118.1 (7) | N7—C33—C34 | 119.8 (7) |
N4—C15—N3 | 117.1 (8) | N8—C33—N7 | 116.3 (8) |
N4—C15—C16 | 124.8 (7) | N8—C33—C34 | 123.8 (7) |
C15—C16—H16 | 107.8 | C33—C34—H34 | 107.5 |
C15—C16—C17 | 109.6 (8) | C33—C34—C35 | 112.8 (7) |
C15—C16—C18 | 112.5 (7) | C33—C34—C36 | 109.8 (7) |
C17—C16—H16 | 107.8 | C35—C34—H34 | 107.5 |
C18—C16—H16 | 107.8 | C36—C34—H34 | 107.5 |
C18—C16—C17 | 111.1 (8) | C36—C34—C35 | 111.6 (7) |
C16—C17—H17A | 109.5 | C34—C35—H35A | 109.5 |
C16—C17—H17B | 109.5 | C34—C35—H35B | 109.5 |
C16—C17—H17C | 109.5 | C34—C35—H35C | 109.5 |
H17A—C17—H17B | 109.5 | H35A—C35—H35B | 109.5 |
H17A—C17—H17C | 109.5 | H35A—C35—H35C | 109.5 |
H17B—C17—H17C | 109.5 | H35B—C35—H35C | 109.5 |
C16—C18—H18A | 109.5 | C34—C36—H36A | 109.5 |
C16—C18—H18B | 109.5 | C34—C36—H36B | 109.5 |
C16—C18—H18C | 109.5 | C34—C36—H36C | 109.5 |
H18A—C18—H18B | 109.5 | H36A—C36—H36B | 109.5 |
H18A—C18—H18C | 109.5 | H36A—C36—H36C | 109.5 |
H18B—C18—H18C | 109.5 | H36B—C36—H36C | 109.5 |
Se1—N2—C6—N1 | −0.2 (9) | Se3—N6—C24—N5 | 0.9 (9) |
Se1—N2—C6—C7 | −176.5 (6) | Se3—N6—C24—C25 | −178.1 (6) |
Se1—C1—C2—C3 | −178.3 (6) | Se3—C19—C20—C21 | 178.7 (7) |
N1—C1—C2—C3 | 0.3 (12) | N5—C19—C20—C21 | −1.4 (12) |
N1—C6—C7—C8 | 74.0 (9) | N5—C24—C25—C26 | −73.8 (9) |
N1—C6—C7—C9 | −162.4 (7) | N5—C24—C25—C27 | 165.2 (7) |
N2—Se1—C1—N1 | 0.8 (5) | N6—Se3—C19—N5 | 0.4 (6) |
N2—Se1—C1—C2 | 179.5 (8) | N6—Se3—C19—C20 | −179.7 (8) |
N2—C6—C7—C8 | −109.8 (9) | N6—C24—C25—C26 | 105.2 (10) |
N2—C6—C7—C9 | 13.8 (11) | N6—C24—C25—C27 | −15.9 (12) |
C1—Se1—N2—C6 | −0.3 (6) | C19—Se3—N6—C24 | −0.7 (6) |
C1—N1—C5—C4 | −1.5 (11) | C19—N5—C23—C22 | −0.5 (12) |
C1—N1—C6—N2 | 0.9 (10) | C19—N5—C24—N6 | −0.6 (10) |
C1—N1—C6—C7 | 177.5 (7) | C19—N5—C24—C25 | 178.5 (7) |
C1—C2—C3—C4 | −0.5 (12) | C19—C20—C21—C22 | 1.3 (13) |
C2—C3—C4—C5 | −0.2 (13) | C20—C21—C22—C23 | −0.8 (13) |
C3—C4—C5—N1 | 1.2 (12) | C21—C22—C23—N5 | 0.4 (13) |
C5—N1—C1—Se1 | 179.5 (6) | C23—N5—C19—Se3 | −179.0 (6) |
C5—N1—C1—C2 | 0.7 (11) | C23—N5—C19—C20 | 1.1 (11) |
C5—N1—C6—N2 | −179.7 (7) | C23—N5—C24—N6 | 178.4 (7) |
C5—N1—C6—C7 | −3.2 (11) | C23—N5—C24—C25 | −2.6 (12) |
C6—N1—C1—Se1 | −1.1 (8) | C24—N5—C19—Se3 | 0.0 (8) |
C6—N1—C1—C2 | −180.0 (7) | C24—N5—C19—C20 | −179.9 (7) |
C6—N1—C5—C4 | 179.3 (7) | C24—N5—C23—C22 | −179.4 (8) |
Se2—N4—C15—N3 | 4.0 (9) | Se4—N8—C33—N7 | 0.8 (9) |
Se2—N4—C15—C16 | −175.0 (6) | Se4—N8—C33—C34 | −177.4 (6) |
Se2—C10—C11—C12 | 179.6 (6) | Se4—C28—C29—C30 | −179.0 (7) |
N3—C10—C11—C12 | −0.9 (11) | N7—C28—C29—C30 | 1.8 (12) |
N3—C15—C16—C17 | −161.4 (7) | N7—C33—C34—C35 | 74.5 (9) |
N3—C15—C16—C18 | 74.5 (10) | N7—C33—C34—C36 | −160.3 (7) |
N4—Se2—C10—N3 | 1.6 (5) | N8—Se4—C28—N7 | −1.2 (6) |
N4—Se2—C10—C11 | −178.9 (8) | N8—Se4—C28—C29 | 179.6 (8) |
N4—C15—C16—C17 | 17.6 (12) | N8—C33—C34—C35 | −107.3 (9) |
N4—C15—C16—C18 | −106.5 (10) | N8—C33—C34—C36 | 17.9 (11) |
C10—Se2—N4—C15 | −3.2 (6) | C28—Se4—N8—C33 | 0.2 (6) |
C10—N3—C14—C13 | 2.9 (12) | C28—N7—C32—C31 | −1.3 (12) |
C10—N3—C15—N4 | −2.8 (10) | C28—N7—C33—N8 | −1.9 (10) |
C10—N3—C15—C16 | 176.3 (7) | C28—N7—C33—C34 | 176.5 (7) |
C10—C11—C12—C13 | 3.2 (12) | C28—C29—C30—C31 | −2.4 (13) |
C11—C12—C13—C14 | −2.5 (12) | C29—C30—C31—C32 | 1.1 (13) |
C12—C13—C14—N3 | −0.7 (12) | C30—C31—C32—N7 | 0.8 (13) |
C14—N3—C10—Se2 | 177.4 (6) | C32—N7—C28—Se4 | −179.3 (6) |
C14—N3—C10—C11 | −2.1 (11) | C32—N7—C28—C29 | 0.0 (11) |
C14—N3—C15—N4 | 180.0 (7) | C32—N7—C33—N8 | 179.3 (7) |
C14—N3—C15—C16 | −1.0 (11) | C32—N7—C33—C34 | −2.3 (11) |
C15—N3—C10—Se2 | 0.1 (8) | C33—N7—C28—Se4 | 1.9 (8) |
C15—N3—C10—C11 | −179.5 (7) | C33—N7—C28—C29 | −178.8 (7) |
C15—N3—C14—C13 | −180.0 (7) | C33—N7—C32—C31 | 177.4 (7) |
D—H···A | D—H | H···A | D···A | D—H···A |
C2—H2···Cl1 | 0.95 | 2.62 | 3.327 (10) | 132 |
C3—H3···Cl2i | 0.95 | 2.67 | 3.598 (9) | 167 |
C5—H5···Cl1ii | 0.95 | 2.67 | 3.395 (10) | 133 |
C11—H11···Cl2 | 0.95 | 2.61 | 3.288 (10) | 129 |
C14—H14···Cl2ii | 0.95 | 2.47 | 3.310 (10) | 147 |
C18—H18C···Cl4iii | 0.98 | 2.73 | 3.687 (11) | 167 |
C20—H20···Cl3 | 0.95 | 2.67 | 3.364 (10) | 131 |
C23—H23···Cl3iv | 0.95 | 2.73 | 3.418 (10) | 130 |
C29—H29···Cl4 | 0.95 | 2.63 | 3.323 (10) | 130 |
C30—H30···Cl3v | 0.95 | 2.81 | 3.651 (9) | 148 |
C32—H32···Cl4ii | 0.95 | 2.76 | 3.452 (9) | 131 |
Symmetry codes: (i) x−1, y−1, z; (ii) x−1, y, z; (iii) −x+2, y+1/2, −z+1/2; (iv) x+1, y, z; (v) −x+1, y−1/2, −z+1/2. |
The Bondi (1966) van der Waals radii for the H, Se, and Cl atoms are 1.20, 1.90, and 1.75 Å, respectively. |
Contact (Å) | ρ(r) | \nabla2ρ(r) | λ2 | Hb | V(r) | G(r) | ELF | Eint |
Se···Cl– 2.900 | 0.027 | 0.060 | -0.027 | 0.000 | -0.015 | 0.015 | 0.170 | 4.7 |
C–H···Cl– 2.609 | 0.012 | 0.043 | -0.012 | 0.002 | -0.006 | 0.008 | 0.045 | 1.9 |
Se···Cl– 2.957 | 0.024 | 0.056 | -0.024 | 0.001 | -0.013 | 0.014 | 0.142 | 4.1 |
C–H···Cl– 2.617 | 0.012 | 0.041 | -0.012 | 0.002 | -0.006 | 0.008 | 0.045 | 1.9 |
Se···Cl– 2.934 | 0.025 | 0.058 | -0.025 | 0.000 | -0.014 | 0.014 | 0.147 | 4.4 |
C–H···Cl– 2.667 | 0.011 | 0.037 | -0.011 | 0.002 | -0.005 | 0.007 | 0.041 | 1.6 |
Se···Cl– 2.920 | 0.026 | 0.058 | -0.026 | 0.000 | -0.015 | 0.015 | 0.165 | 4.7 |
C–H···Cl– 2.633 | 0.012 | 0.040 | -0.012 | 0.002 | -0.006 | 0.008 | 0.044 | 1.9 |
Acknowledgements
Authors' contributions are as follows: conceptualization, AWT, AGT; methodology, AAS, AGT; validation: AWT, ASK, AGT; formal analysis: ASN, TAL; investigation: AWT, ASK, TAL and AGT; resources, ASK, AGT; data curation, AAS, ASN, AKK; writing (original draft), ASN, AWT and TAL; writing (review and editing), AAS, AGT, TAL; visualization, AWT, TAL; supervision, AWT, AGT; project administration, AGT; funding acquisition, AGT, TAL.
Funding information
This work was performed under the support of the Russian Science Foundation (award No. 2273-10007).
References
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