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research communications
N-(2-nitrophenyl)maleimide
Hirshfeld surface analysis and DFT study ofaGrupo de Investigación en Fotocatálisis y Estado Sólido GIFES, Escuela de Química, Universidad Tecnológica de Pereira, Carrera 27 10-02, Pereira, Colombia, and bFacultad de Ciencias Naturales, Exactas y de la Educación, Departamento de Química, Universidad del Cauca, Calle 5 4-70, Popayán, Colombia
*Correspondence e-mail: hvalencia@utp.edu.co
The title compound [systematic name: 1-(2-nitrophenyl)pyrrole-2,5-dione], C10H6N2O4, crystallizes in the monoclinic system (space group P21/n) with two molecules in the which are linked by C—H⋯O hydrogen bonds. Hirshfeld surface analysis showed that the most significant contributions to the crystal packing are from H⋯O/O⋯H, H⋯C/C⋯H and H⋯H interactions, which contribute 54.7%, 15.2% and 15.6%, respectively. A DFT study was conducted using three different levels of theory [(B3LYP/6–311+G(d,p), wB97XD/Def2TZVPP and LC-wpbe/6–311(2 d,2p)] in order to determine the stability, structural and electronic properties of the title molecule with a view to its potential applications and photochemical and properties.
Keywords: crystal structure; nitrophenylmaleimide; Hirsfeld surface analysis; 1-(2-nitrophenyl)-1H-pyrrole-2,5-dione.
CCDC reference: 2328386
1. Chemical context
1-(2-Nitrophenyl)pyrrole-2,5-dione is a compound derived from N-aryl maleimide (cyclic N-imides), with the –CO—N(R)—CO– where R is an aryl group (Hargreaves et al., 1970) . N-phenylmaleimides substituted by the N atom present various reactivity and photochemical properties that depend on the substituent group and the torsion angle between imide and benzene rings. These molecules have been used as a providing greater structural rigidity, increase in dielectric properties and thermal stability compared to the unreacted polymer (Mejia et al., 2021
; Shi et al., 2020
). The importance of these molecules is due to the potential reactivity of the double bonds that act as dienophiles, promoting Diels–Alder reactions for the formation of new organic molecules (Galkin et al., 2022
; Bastin et al., 2019
). Likewise, these families of compounds present good fungicidal properties against human pathogenic fungi, anti-leukemia activity, and differential cytotoxicity against cancer cells, among other biological activities (Paprocka et al. 2022
; Mutlaq et al., 2021
; Ali et al., 2017
; Chen et al., 2017
).
N-2-nitrophenylmaleimide [1-(2-nitrophenyl)pyrrole-2,5-dione], commonly called N-ortho-nitrophenylmaleimide, is used in homopolymers and copolymers with methyl methacrylate with excellent thermal stability, high polydispersity, and solubility in non-polar and moderately polar solvents. However, the substitution of the nitro group in the ortho position causes intramolecular ring repulsion or with the maleimide ring (Kumar & Jagrati, 2023; Kumar 2022
). Recently, in our group, a new water-friendly supramolecular polymeric material obtained from the blend of isomers of nitrophenylmaleimide and carboxy-methylcellulose (CMC) was reported (García et al., 2023
). The polymers obtained present interesting properties such as high viscosity, resistance to acids, bases, and oxidant substances; also, this material presents an increase in thermal properties compared to CMC, and good biodegradability. However, among the polymers obtained, those synthesized from ortho-maleimides do not show good properties because of the repulsion of the nitro group with the imide ring, which affects the formation of hydrogen bonds (García et al., 2023
). Likewise, in a theoretical study of 43 molecules of substituted N-phenylmaleimides (including 2-nitrophenylmaleimide) in different positions using the B3LYP/ 6-311+G (d,p) method, it was found that the torsion angle affects the structural, electronic and energetic properties. Besides, the values of the global and local reactivity descriptors depend on the type of substituent (electron donor or acceptor groups). The substitution of the nitro group in the ortho position has greater global hardness and lower values than the meta and para isomers, suggesting a lower reactivity than for its isomers (Cortes & Castro, 2016
). Continuing with the development of the synthetic methodology for obtaining all the isomers of nitrophenylmaleimide (Cortes & Castro, 2016
; Moreno-Fuquen et al., 2003
, 2006
), this work presents the synthesis, characterization by single-crystal X-ray diffraction, and analysis of supramolecular interactions by Hirshfeld surface analysis from the structural data. In addition, theoretical calculations of structural and electronic properties were performed by density functional theory (DFT). Finally, the effect of the repulsion of the nitro group that affects the physical and chemical properties was examined.
2. Structural commentary
The ). Each molecule consists of fused benzene and maleimide rings. In both conformers, a large dihedral angle is subtended between the rings with values of 73.94 (2)° for the C1–C6 and N1/C7–C10 rings and 55.02 (2)° for the C11–C16 and N2/C17–C20rings. A slight difference is observed in the torsion angle between the aromatic ring and the nitro group in the two conformers with values of 37.8 (3) and 38.8 (2)° for C2—C3—N3—O3 and C12—C13—N4—O8, respectively.
![]() | Figure 1 The molecular structure of the title compound, with displacement ellipsoids drawn at the 50% probability level. Only one component of the disordered O4 atom is shown for clarity. |
3. Supramolecular features
In the crystal, the two conformers are arranged in lamellae in the (110) plane, with conformers A being linked along the a- and b-axis directions by C2—H2⋯O1, C6—H6⋯O1 and C8—H8⋯O2 hydrogen bonds. Conformers B are linked along the a- and b-axis directions through C15—H15⋯O5, C18—H18⋯O5 and C12—H12⋯O7 interactions (Fig. 2, Table 1
). The formed layers are joined by C5—H5⋯O7 and C19—H19⋯O2 hydrogen bonds.
|
![]() | Figure 2 Conformers A and B of o-nitrophenylmaleimide. |
4. Hirshfeld surface analysis
A Hirshfeld surface analysis was performed using CrystalExplorer 17.5 software (Spackman et al., 2021). Fig. 3
shows the Hirshfeld surface mapped over dnorm for the title compound, where red denotes shorter contacts (shorter than the sum of the van der Waals radii), blue denotes longer contacts (longer than the sum of the van der Waals radii), and white regions indicate contacts equal to the sum of the van der Waals radii. The red region in Fig. 3
represents the strongest and most important contacts represented by intermolecular C—H⋯O hydrogen bonds. To quantify the supramolecular interactions that give rise to crystal packing, two-dimensional fingerprint plots (FPP) were generated and these are shown in in Fig. 4
. The FPP analysis reveals that H⋯O/O⋯H (54.7%) H⋯C/C⋯H (15.2%), and H⋯H (15.6%) are the most important interactions responsible for the largest contributions to the crystal packing of the title compound.
![]() | Figure 3 The Hirshfeld surface of the title compound mapped over dnorm. |
![]() | Figure 4 The fingerprint plots of the title compound delineated into the various labeled contacts. |
5. Computational details and DFT calculations
Computational quantum chemistry calculations were performed for 1-(2-nitrophenyl)pyrrole-2,5-dione using density functional theory (DFT). The following levels of theory were used to compare the change in stability, structural and electronic properties: B3LYP/6-311+G(d,p) (Clark et al., 1983; Lee & Yang, 1988
; Becke, 1993
), wB97XD/Def2TZVPP (Weigend, & Ahlrichs, 2005
; Chai & Head-Gordon, 2008
), and LC-wpbe/6-311g(2d,2p) (Clark et al., 1983
; Vydrov et al., 2006
). For all calculations, the quantum chemistry Gaussian 16 (Frisch et al., 2019
) software was employed. The molecular geometries were fully optimized with a threshold of 10−5 a.u. for RMS forces. The optimized structures were confirmed to be true local minima by estimating the normal vibrations. Additionally, for 1-(2-nitrophenyl)pyrrole-2,5-dione, the curve was inspected through variations of the dihedral angle (C, N imide ring and C, C phenyl ring) at intervals of 15°, with the reference energy being the angle of 0° between the maleimide and benzene ring. At each point, the three levels of theory were used. The optimized geometry of 1-(2-nitrophenyl)pyrrole-2,5-dione is shown in Fig. 5
. Some of the structural parameters such as bond lengths, bond angles, and the dihedral angle between the imide and phenyl rings are summarized in Table 2
.
|
![]() | Figure 5 The optimized geometry of 1-(2-nitrophenyl)pyrrole-2,5-dione by (a) B3LYP/6–311+G (d,p); (b) wB97XD/Def2TZVPP and (c) LC-wpbe/6–311 g(2d,2p). |
The structures present MPEs (Mean Percentage Errors) lower than 2.5% for the mean of the parameters compared to the three levels of theory evaluated. However, some values show a higher difference. For example, the C=C bond length of the maleimide ring is 0.024–0.011 Å longer compared to the experimental value. This discrepancy can be attributed to the presence of hydrogen-bonding interactions in the N-phenylmaleimide derivatives (Cortes & Castro, 2016). For this structural parameter, a small difference was observed between the experimental angle and those obtained by DFT calculations. From the results obtained, it is concluded that the calculated structural parameters (lengths, bond angles and dihedral angle) using different levels of DFT theory agree excellently with the experimental data. Moreover, functionals including dispersion (wB97XD) and long-range correction (LC-wpbe) show values closer to those obtained experimentally.
In 1-(2-nitrophenyl)pyrrole-2,5-dione, a repulsion is observed between the nitro group (NO2) and the oxygen atoms of the carbonyl group (C=O) of the maleimide ring, leading to a high value of the dihedral angle. To investigate this, the dihedral angle (C20—N2—C14—C15) of N-2-nitrophenylmaleimide was varied and the surface (PES) was determined using the three levels of theory. Fig. 6 illustrates a similar trend in the electronic energy values and zero-point energy corrections (ZPE) for all functionals used. For 1-(2-nitrophenyl)pyrrole-2,5-dione, a of approximately 150 kcal mol−1 determined with all three functionals was observed. This indicates the presence of a repulsive effect between NO2 and CO, resulting in rotamers with increased stability at specific spatial orientations. Interestingly, the angles observed in the crystalline dimers align with the most energetically stable rotamers calculated. Furthermore, the levels of theory incorporating including dispersion and long-range correction exhibit lower energetic values for each rotamer calculated (Fig. 5
). These results are in agreement with previous studies using DFT methods (Cortes & Castro, 2016
; Mao et al., 2011
).
![]() | Figure 6 PES for 1-(2-nitrophenyl)pyrrole-2,5-dione with three DFT methods. |
6. Synthesis and crystallization
The synthesis of o-nitrophenylmaleimide was performed following the procedure described by Cava et al. (1961), which involves two steps (Fig. 7
). In the first step, 2-nitro(N-phenyl)maleanilic acid was obtained by mixing 1.30 g of maleic anhydride and 25 mL of ethyl ether as solvent. Once the maleic anhydride was dissolved, a solution of o-nitroaniline (1.83 g) in 5 mL of ether was added dropwise through the burette under constant stirring. The reaction mixture was stirred at room temperature for 1 h and then cooled in an ice bath. The product was obtained by vacuum filtration and used for the subsequent step of the synthesis. The reaction yield in the first step was 92%.
![]() | Figure 7 Reaction scheme for the synthesis of the title compound. |
In the second step, N-(2-nitrophenyl)maleimide was obtained. In an Erlenmeyer flask, 16 mL of acetic anhydride and 1.30 g of sodium acetate anhydride were mixed. The previously obtained maleanilic acid (2.88 g) was then added to the reaction mixture under constant stirring and heating for 30 min. The reaction mixture was cooled to room temperature. The resulting solid was removed by vacuum filtration, washed three times with 5 mL portions of cool water and 5 mL of petroleum ether. 2.02 g of the compound were obtained in a yield in the second step of 76%. The final percentage yield in the synthesis was 69.85%.
Recrystallization was carried out using chloroform, resulting in the formation of yellow prismatic crystals.
7. Refinement
Crystal data, data collection and structure . Hydrogen atoms were positioned geometrically and refined using a riding model [C—H = 0.93 Å, Uiso(H) = 1.2Ueq(C)]. The positional disorder observed in the nitro group (O4A, O4B) was modeled by setting the occupancy factor to 0.5 for each atom.
|
Supporting information
CCDC reference: 2328386
https://doi.org/10.1107/S2056989024000926/vu2003sup1.cif
contains datablock I. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S2056989024000926/vu2003Isup2.hkl
Supporting information file. DOI: https://doi.org/10.1107/S2056989024000926/vu2003Isup3.cml
C10H6N2O4 | F(000) = 896 |
Mr = 218.17 | Dx = 1.483 Mg m−3 |
Monoclinic, P21/n | Mo Kα radiation, λ = 0.71073 Å |
a = 14.331 (5) Å | Cell parameters from 2214 reflections |
b = 7.769 (5) Å | θ = 3.6–29.5° |
c = 17.558 (5) Å | µ = 0.12 mm−1 |
β = 91.969 (5)° | T = 293 K |
V = 1953.7 (15) Å3 | Needle, clear yellow |
Z = 8 | 0.60 × 0.51 × 0.36 mm |
Xcalibur, Atlas, Gemini diffractometer | Rint = 0.020 |
Radiation source: Enhance (Mo) X-ray Source | θmax = 29.0°, θmin = 3.6° |
ω scans | h = −18→17 |
Absorption correction: analytical (CrysAlisPro; Agilent, 2012) | k = −7→10 |
Tmin = 0.983, Tmax = 0.988 | l = −16→23 |
8808 measured reflections | 3 standard reflections every 60 min |
5183 independent reflections | intensity decay: none |
2815 reflections with I > 2σ(I) |
Refinement on F2 | Hydrogen site location: inferred from neighbouring sites |
Least-squares matrix: full | H-atom parameters constrained |
R[F2 > 2σ(F2)] = 0.048 | w = 1/[σ2(Fo2) + (0.0388P)2 + 0.6076P] where P = (Fo2 + 2Fc2)/3 |
wR(F2) = 0.122 | (Δ/σ)max < 0.001 |
S = 1.02 | Δρmax = 0.21 e Å−3 |
4548 reflections | Δρmin = −0.19 e Å−3 |
299 parameters | Extinction correction: SHELXL2016/6 (Sheldrick, 2015b), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
0 restraints | Extinction coefficient: 0.0083 (8) |
Primary atom site location: dual |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
N2 | 0.57741 (10) | 0.7048 (2) | 0.17503 (8) | 0.0448 (4) | |
O6 | 0.47003 (10) | 0.6430 (2) | 0.07816 (8) | 0.0720 (5) | |
O8 | 0.42833 (12) | 0.53297 (19) | 0.23870 (10) | 0.0726 (5) | |
N1 | 0.23720 (10) | 0.4967 (2) | 0.46284 (9) | 0.0476 (4) | |
O5 | 0.70442 (11) | 0.6767 (2) | 0.25807 (9) | 0.0809 (5) | |
N4 | 0.38702 (12) | 0.6666 (2) | 0.22501 (9) | 0.0521 (4) | |
O2 | 0.11155 (11) | 0.4289 (2) | 0.53495 (10) | 0.0818 (5) | |
O7 | 0.30425 (11) | 0.6748 (2) | 0.20630 (10) | 0.0807 (5) | |
O1 | 0.33431 (11) | 0.6568 (3) | 0.38930 (11) | 0.0936 (6) | |
C13 | 0.43816 (12) | 0.8286 (2) | 0.23277 (10) | 0.0389 (4) | |
C14 | 0.53010 (12) | 0.8421 (2) | 0.21045 (10) | 0.0396 (4) | |
N3 | 0.37727 (17) | 0.6062 (3) | 0.57413 (12) | 0.0727 (6) | |
O4A | 0.3015 (11) | 0.6806 (17) | 0.5880 (10) | 0.129 (5) | 0.5 |
C4 | 0.30211 (13) | 0.3785 (3) | 0.49581 (10) | 0.0458 (5) | |
C12 | 0.39261 (14) | 0.9659 (2) | 0.26434 (11) | 0.0493 (5) | |
H12 | 0.330597 | 0.955447 | 0.277613 | 0.059* | |
C15 | 0.57553 (14) | 0.9976 (3) | 0.22127 (11) | 0.0505 (5) | |
H15 | 0.636591 | 1.010733 | 0.205935 | 0.061* | |
C20 | 0.54333 (14) | 0.6143 (3) | 0.11138 (11) | 0.0514 (5) | |
C17 | 0.66103 (13) | 0.6319 (3) | 0.20183 (12) | 0.0531 (5) | |
C3 | 0.37054 (14) | 0.4268 (3) | 0.54888 (11) | 0.0523 (5) | |
C7 | 0.14624 (14) | 0.5155 (3) | 0.48641 (12) | 0.0538 (5) | |
C11 | 0.43925 (16) | 1.1178 (3) | 0.27605 (12) | 0.0573 (5) | |
H11 | 0.409483 | 1.210544 | 0.298310 | 0.069* | |
C16 | 0.53049 (16) | 1.1328 (3) | 0.25470 (12) | 0.0598 (6) | |
H16 | 0.562129 | 1.236008 | 0.263028 | 0.072* | |
C10 | 0.25829 (15) | 0.6291 (3) | 0.41321 (12) | 0.0579 (6) | |
O3 | 0.45594 (16) | 0.6661 (3) | 0.58559 (13) | 0.1184 (8) | |
C19 | 0.61368 (15) | 0.4812 (3) | 0.09608 (13) | 0.0609 (6) | |
H19 | 0.610624 | 0.403119 | 0.055928 | 0.073* | |
C9 | 0.17067 (16) | 0.7259 (3) | 0.40028 (13) | 0.0652 (6) | |
H9 | 0.162690 | 0.819245 | 0.367519 | 0.078* | |
C5 | 0.29837 (16) | 0.2077 (3) | 0.47417 (13) | 0.0640 (6) | |
H5 | 0.253871 | 0.171906 | 0.437746 | 0.077* | |
C18 | 0.68104 (16) | 0.4907 (3) | 0.14809 (13) | 0.0639 (6) | |
H18 | 0.733352 | 0.419827 | 0.150902 | 0.077* | |
C8 | 0.10613 (15) | 0.6601 (3) | 0.44202 (13) | 0.0652 (6) | |
H8 | 0.044719 | 0.698340 | 0.443510 | 0.078* | |
C2 | 0.43382 (16) | 0.3107 (4) | 0.57970 (13) | 0.0720 (7) | |
H2 | 0.480623 | 0.346376 | 0.614146 | 0.086* | |
C1 | 0.42634 (19) | 0.1411 (4) | 0.55849 (16) | 0.0805 (8) | |
H1 | 0.467045 | 0.060191 | 0.580155 | 0.097* | |
C6 | 0.3598 (2) | 0.0902 (3) | 0.50596 (16) | 0.0802 (8) | |
H6 | 0.355932 | −0.024794 | 0.491543 | 0.096* | |
O4B | 0.3109 (8) | 0.6914 (10) | 0.5784 (7) | 0.076 (2) | 0.5 |
U11 | U22 | U33 | U12 | U13 | U23 | |
N2 | 0.0371 (8) | 0.0495 (9) | 0.0474 (9) | 0.0031 (7) | −0.0032 (6) | −0.0111 (8) |
O6 | 0.0586 (9) | 0.0980 (13) | 0.0582 (9) | 0.0062 (9) | −0.0134 (7) | −0.0229 (9) |
O8 | 0.0853 (12) | 0.0376 (8) | 0.0959 (12) | −0.0044 (8) | 0.0160 (9) | 0.0038 (8) |
N1 | 0.0399 (9) | 0.0537 (10) | 0.0494 (9) | 0.0047 (7) | 0.0030 (7) | 0.0106 (8) |
O5 | 0.0592 (9) | 0.1078 (14) | 0.0739 (10) | 0.0278 (9) | −0.0224 (8) | −0.0266 (10) |
N4 | 0.0487 (10) | 0.0508 (11) | 0.0569 (10) | −0.0118 (8) | 0.0034 (8) | 0.0013 (8) |
O2 | 0.0567 (10) | 0.0974 (13) | 0.0925 (12) | −0.0001 (9) | 0.0200 (8) | 0.0336 (11) |
O7 | 0.0474 (9) | 0.0968 (13) | 0.0973 (12) | −0.0276 (9) | −0.0077 (8) | −0.0006 (10) |
O1 | 0.0575 (10) | 0.1259 (16) | 0.0987 (13) | 0.0074 (10) | 0.0215 (9) | 0.0615 (12) |
C13 | 0.0386 (9) | 0.0354 (9) | 0.0425 (9) | −0.0017 (8) | −0.0025 (7) | 0.0041 (8) |
C14 | 0.0363 (9) | 0.0416 (10) | 0.0405 (9) | −0.0002 (8) | −0.0027 (7) | −0.0025 (8) |
N3 | 0.0769 (15) | 0.0820 (16) | 0.0584 (12) | −0.0005 (14) | −0.0112 (11) | −0.0154 (11) |
O4A | 0.135 (9) | 0.133 (9) | 0.119 (7) | 0.036 (6) | 0.025 (5) | −0.042 (6) |
C4 | 0.0436 (10) | 0.0491 (11) | 0.0451 (10) | 0.0054 (9) | 0.0065 (8) | 0.0069 (9) |
C12 | 0.0442 (11) | 0.0474 (11) | 0.0566 (12) | 0.0075 (9) | 0.0058 (9) | 0.0066 (10) |
C15 | 0.0451 (11) | 0.0543 (12) | 0.0522 (11) | −0.0121 (10) | 0.0026 (8) | −0.0039 (10) |
C20 | 0.0498 (11) | 0.0568 (12) | 0.0476 (11) | −0.0055 (10) | 0.0018 (9) | −0.0089 (10) |
C17 | 0.0433 (11) | 0.0624 (13) | 0.0533 (12) | 0.0083 (10) | −0.0013 (9) | −0.0057 (10) |
C3 | 0.0533 (12) | 0.0610 (13) | 0.0428 (10) | 0.0100 (10) | 0.0022 (9) | 0.0003 (10) |
C7 | 0.0421 (11) | 0.0620 (13) | 0.0575 (12) | −0.0005 (10) | 0.0046 (9) | 0.0073 (11) |
C11 | 0.0709 (14) | 0.0407 (11) | 0.0609 (13) | 0.0093 (11) | 0.0090 (11) | −0.0009 (10) |
C16 | 0.0753 (15) | 0.0423 (11) | 0.0618 (13) | −0.0159 (11) | 0.0035 (11) | −0.0075 (10) |
C10 | 0.0515 (12) | 0.0702 (14) | 0.0520 (12) | 0.0017 (11) | 0.0024 (9) | 0.0176 (11) |
O3 | 0.1028 (16) | 0.1317 (19) | 0.1193 (17) | −0.0274 (14) | −0.0180 (13) | −0.0397 (14) |
C19 | 0.0650 (14) | 0.0576 (13) | 0.0609 (13) | −0.0005 (11) | 0.0105 (11) | −0.0191 (11) |
C9 | 0.0606 (14) | 0.0675 (15) | 0.0669 (14) | 0.0084 (12) | −0.0075 (11) | 0.0223 (12) |
C5 | 0.0690 (15) | 0.0547 (13) | 0.0681 (14) | −0.0004 (11) | 0.0015 (11) | 0.0029 (12) |
C18 | 0.0601 (14) | 0.0630 (14) | 0.0690 (14) | 0.0163 (11) | 0.0096 (11) | −0.0083 (12) |
C8 | 0.0474 (12) | 0.0747 (15) | 0.0735 (14) | 0.0156 (12) | 0.0007 (11) | 0.0109 (13) |
C2 | 0.0615 (14) | 0.100 (2) | 0.0540 (13) | 0.0235 (14) | −0.0013 (10) | 0.0112 (14) |
C1 | 0.0797 (18) | 0.086 (2) | 0.0766 (17) | 0.0393 (16) | 0.0147 (14) | 0.0276 (16) |
C6 | 0.095 (2) | 0.0514 (14) | 0.0954 (19) | 0.0169 (14) | 0.0168 (16) | 0.0094 (14) |
O4B | 0.081 (5) | 0.040 (3) | 0.106 (6) | 0.015 (3) | −0.021 (4) | −0.014 (3) |
N2—C14 | 1.419 (2) | C15—H15 | 0.9300 |
N2—C20 | 1.394 (2) | C15—C16 | 1.375 (3) |
N2—C17 | 1.393 (2) | C20—C19 | 1.475 (3) |
O6—C20 | 1.205 (2) | C17—C18 | 1.481 (3) |
O8—N4 | 1.215 (2) | C3—C2 | 1.377 (3) |
N1—C4 | 1.416 (2) | C7—C8 | 1.473 (3) |
N1—C7 | 1.389 (2) | C11—H11 | 0.9300 |
N1—C10 | 1.388 (3) | C11—C16 | 1.377 (3) |
O5—C17 | 1.200 (2) | C16—H16 | 0.9300 |
N4—O7 | 1.222 (2) | C10—C9 | 1.475 (3) |
N4—C13 | 1.460 (2) | C19—H19 | 0.9300 |
O2—C7 | 1.207 (2) | C19—C18 | 1.308 (3) |
O1—C10 | 1.200 (2) | C9—H9 | 0.9300 |
C13—C14 | 1.391 (2) | C9—C8 | 1.304 (3) |
C13—C12 | 1.377 (3) | C5—H5 | 0.9300 |
C14—C15 | 1.382 (3) | C5—C6 | 1.373 (3) |
N3—O4A | 1.261 (15) | C18—H18 | 0.9300 |
N3—C3 | 1.465 (3) | C8—H8 | 0.9300 |
N3—O3 | 1.230 (3) | C2—H2 | 0.9300 |
N3—O4B | 1.164 (11) | C2—C1 | 1.372 (4) |
C4—C3 | 1.381 (3) | C1—H1 | 0.9300 |
C4—C5 | 1.381 (3) | C1—C6 | 1.362 (4) |
C12—H12 | 0.9300 | C6—H6 | 0.9300 |
C12—C11 | 1.369 (3) | ||
C20—N2—C14 | 124.81 (15) | C2—C3—C4 | 122.0 (2) |
C17—N2—C14 | 125.19 (15) | N1—C7—C8 | 106.01 (18) |
C17—N2—C20 | 109.84 (16) | O2—C7—N1 | 124.43 (19) |
C7—N1—C4 | 123.81 (16) | O2—C7—C8 | 129.5 (2) |
C10—N1—C4 | 125.65 (16) | C12—C11—H11 | 120.2 |
C10—N1—C7 | 109.61 (16) | C12—C11—C16 | 119.69 (19) |
O8—N4—O7 | 124.03 (18) | C16—C11—H11 | 120.2 |
O8—N4—C13 | 118.58 (16) | C15—C16—C11 | 121.02 (19) |
O7—N4—C13 | 117.37 (18) | C15—C16—H16 | 119.5 |
C14—C13—N4 | 121.04 (16) | C11—C16—H16 | 119.5 |
C12—C13—N4 | 117.50 (16) | N1—C10—C9 | 105.79 (18) |
C12—C13—C14 | 121.45 (17) | O1—C10—N1 | 124.88 (19) |
C13—C14—N2 | 122.56 (16) | O1—C10—C9 | 129.3 (2) |
C15—C14—N2 | 119.17 (16) | C20—C19—H19 | 125.5 |
C15—C14—C13 | 118.24 (17) | C18—C19—C20 | 109.02 (19) |
O4A—N3—C3 | 116.5 (7) | C18—C19—H19 | 125.5 |
O3—N3—O4A | 125.8 (7) | C10—C9—H9 | 125.4 |
O3—N3—C3 | 117.4 (2) | C8—C9—C10 | 109.3 (2) |
O4B—N3—C3 | 121.0 (4) | C8—C9—H9 | 125.4 |
O4B—N3—O3 | 121.4 (5) | C4—C5—H5 | 119.7 |
C3—C4—N1 | 122.75 (18) | C6—C5—C4 | 120.6 (2) |
C5—C4—N1 | 119.45 (18) | C6—C5—H5 | 119.7 |
C5—C4—C3 | 117.80 (19) | C17—C18—H18 | 125.3 |
C13—C12—H12 | 120.2 | C19—C18—C17 | 109.39 (19) |
C11—C12—C13 | 119.52 (18) | C19—C18—H18 | 125.3 |
C11—C12—H12 | 120.2 | C7—C8—H8 | 125.5 |
C14—C15—H15 | 120.0 | C9—C8—C7 | 108.97 (19) |
C16—C15—C14 | 120.04 (19) | C9—C8—H8 | 125.5 |
C16—C15—H15 | 120.0 | C3—C2—H2 | 120.7 |
N2—C20—C19 | 106.06 (17) | C1—C2—C3 | 118.6 (2) |
O6—C20—N2 | 124.78 (19) | C1—C2—H2 | 120.7 |
O6—C20—C19 | 129.16 (19) | C2—C1—H1 | 119.7 |
N2—C17—C18 | 105.62 (17) | C6—C1—C2 | 120.6 (2) |
O5—C17—N2 | 125.12 (19) | C6—C1—H1 | 119.7 |
O5—C17—C18 | 129.25 (19) | C5—C6—H6 | 119.8 |
C4—C3—N3 | 120.01 (19) | C1—C6—C5 | 120.4 (2) |
C2—C3—N3 | 118.0 (2) | C1—C6—H6 | 119.8 |
N2—C14—C15—C16 | 179.26 (18) | C4—N1—C10—C9 | −174.82 (18) |
N2—C20—C19—C18 | 1.9 (3) | C4—C3—C2—C1 | −2.1 (3) |
N2—C17—C18—C19 | −1.3 (3) | C4—C5—C6—C1 | −1.1 (4) |
O6—C20—C19—C18 | −177.2 (2) | C12—C13—C14—N2 | −177.44 (17) |
O8—N4—C13—C14 | 38.8 (2) | C12—C13—C14—C15 | 0.5 (3) |
O8—N4—C13—C12 | −139.90 (19) | C12—C11—C16—C15 | 0.4 (3) |
N1—C4—C3—N3 | 0.9 (3) | C20—N2—C14—C13 | 51.8 (3) |
N1—C4—C3—C2 | −179.20 (19) | C20—N2—C14—C15 | −126.1 (2) |
N1—C4—C5—C6 | −179.2 (2) | C20—N2—C17—O5 | −176.2 (2) |
N1—C7—C8—C9 | −3.9 (3) | C20—N2—C17—C18 | 2.5 (2) |
N1—C10—C9—C8 | 3.0 (3) | C20—C19—C18—C17 | −0.4 (3) |
O5—C17—C18—C19 | 177.4 (3) | C17—N2—C14—C13 | −123.1 (2) |
N4—C13—C14—N2 | 3.9 (3) | C17—N2—C14—C15 | 59.0 (3) |
N4—C13—C14—C15 | −178.18 (16) | C17—N2—C20—O6 | 176.4 (2) |
N4—C13—C12—C11 | 176.92 (17) | C17—N2—C20—C19 | −2.8 (2) |
O2—C7—C8—C9 | 174.7 (2) | C3—C4—C5—C6 | 1.3 (3) |
O7—N4—C13—C14 | −142.47 (18) | C3—C2—C1—C6 | 2.4 (4) |
O7—N4—C13—C12 | 38.8 (2) | C7—N1—C4—C3 | −100.0 (2) |
O1—C10—C9—C8 | −174.7 (3) | C7—N1—C4—C5 | 80.6 (3) |
C13—C14—C15—C16 | 1.3 (3) | C7—N1—C10—O1 | 172.4 (2) |
C13—C12—C11—C16 | 1.3 (3) | C7—N1—C10—C9 | −5.5 (2) |
C14—N2—C20—O6 | 0.9 (3) | C10—N1—C4—C3 | 67.8 (3) |
C14—N2—C20—C19 | −178.29 (17) | C10—N1—C4—C5 | −111.6 (2) |
C14—N2—C17—O5 | −0.7 (3) | C10—N1—C7—O2 | −172.8 (2) |
C14—N2—C17—C18 | 178.04 (18) | C10—N1—C7—C8 | 5.9 (2) |
C14—C13—C12—C11 | −1.8 (3) | C10—C9—C8—C7 | 0.5 (3) |
C14—C15—C16—C11 | −1.7 (3) | O3—N3—C3—C4 | −142.3 (2) |
N3—C3—C2—C1 | 177.8 (2) | O3—N3—C3—C2 | 37.8 (3) |
O4A—N3—C3—C4 | 43.2 (9) | C5—C4—C3—N3 | −179.7 (2) |
O4A—N3—C3—C2 | −136.7 (9) | C5—C4—C3—C2 | 0.2 (3) |
C4—N1—C7—O2 | −3.3 (3) | C2—C1—C6—C5 | −0.9 (4) |
C4—N1—C7—C8 | 175.37 (18) | O4B—N3—C3—C4 | 32.9 (8) |
C4—N1—C10—O1 | 3.1 (4) | O4B—N3—C3—C2 | −147.0 (8) |
D—H···A | D—H | H···A | D···A | D—H···A |
C5—H5···O7i | 0.93 | 2.64 | 3.457 (3) | 148 |
C18—H18···O5ii | 0.93 | 2.61 | 3.343 (3) | 136 |
C16—H16···O3iii | 0.93 | 2.79 | 3.210 (3) | 109 |
C15—H15···O5iv | 0.93 | 2.68 | 3.455 (3) | 142 |
C19—H19···O2v | 0.93 | 2.61 | 3.362 (3) | 139 |
C19—H19···O6vi | 0.93 | 2.61 | 3.388 (3) | 141 |
C2—H2···O1vii | 0.93 | 2.66 | 3.358 (3) | 133 |
Symmetry codes: (i) −x+1/2, y−1/2, −z+1/2; (ii) −x+3/2, y−1/2, −z+1/2; (iii) −x+1, −y+2, −z+1; (iv) −x+3/2, y+1/2, −z+1/2; (v) x+1/2, −y+1/2, z−1/2; (vi) −x+1, −y+1, −z; (vii) −x+1, −y+1, −z+1. |
The numbering scheme used is that shown in Fig 6. |
Structural parameter | Calculation Method | Experimental | ||
B3LYP/6-311+G (d,p) | wB97XD/Def2TZVPP | LC-wpbe/6-311g(2d,2p) | ||
Bond lengths | ||||
C8—C9, C18—C19 | 1.332 | 1.324 | 1.319 | 1.304, 1.308 |
C4—N1, C14—N2 | 1.416 | 1.409 | 1.409 | 1.416, 1.420 |
C7—O2, C10—O1, C20—O6, C17—O5 | 1.204, 1.205 | 1.197 | 1.198, 1200 | 1.200, 1.207 |
C3—N3, C13—N4 | 1.480 | 1.472 | 1.465 | 1.460, 1.465 |
N3—O3, N3—O4, N4—O7, N4—O8 | 1.221,1.225 | 1.209, 1.213 | 1.209, 1.212 | 1.261, 1.230, 1.222, 1.215 |
N1—C7, N1—C7, N2—C20, N2—C17 | 1.411, 1.412 | 1.399, 1.400 | 1.394, 1.395 | 1.388, 1.389, 1.392, 1.394 |
Mean percentage error (MPE) | 0.949 | 0.516 | 0.283 | |
Bond angles | ||||
C4—N1—C7, C4—N1—C10, C14—N2—C20, C14—N2—C17 | 124.7, 124.9 | 124.5, 124.7 | 124.9, 125.0 | 123.9, 125.6, 124.8, 125.2 |
O1—C10—C9, O2—C7—C8, O6—C20—C19, O5—C17—C18 | 128.6, 128.3 | 128.3, 128.5 | 128.5, 128.8 | 129.3, 129.5, 129.1, 129.2 |
C10—N1—C7, C20—N2—C17 | 110.2 | 110.4 | 110.1 | 109.6, 109.9 |
O3—N3—O4, O7—N4—O8 | 124.9 | 125.1 | 124.6 | 121.4.0, 124.0 |
N1—C4—C3, N2—C14—C13 | 123.0 | 122.7 | 122.5 | 122.7, 122.5 |
N1—C4—C5, N2—C14—C15 | 118.9 | 118.9 | 119.2 | 119.5, 119.2 |
Mean percentage error (MPE) | 0.354 | 0.384 | 0.163 | |
Torsion angles | ||||
C7—N1—C4—C3, C20—N2—C14—C15 | 123.2 | 124.6 | 125.6 | 100.0, 126.2 |
Mean percentage error (MPE) | 2.377 | 1.268 | 0.475 |
Acknowledgements
The authors acknowledge the Universidad Tecnologica de Pereira (UTP) and Vicerrectoria de Investigaciónes, Innovación y Extensión from UTP for support of project 9–23-1. RD is grateful to the Universidad del Cauca for support.
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