research communications
Synthesis, molecular and 2)2CSSC(NH2)2]2[RuBr6]Br2·3H2O
of [(NHaRUDN University, 115419 Moscow, Russian Federation, bDepartment of Physics, Faculty of Sciences, Erciyes University, 38039 Kayseri, Türkiye, c"Composite Materials" Scientific Research Center, Azerbaijan State Economic University (UNEC), Murtuza Mukhtarov str. 194, Az 1065, Baku, Azerbaijan, dDepartment of Chemistry, Baku State University, Z. Khalilov str. 23, Az, 1148, Baku, Azerbaijan, and eDepartment of Chemistry, M.M.A.M.C (Tribhuvan University) Biratnagar, Nepal
*Correspondence e-mail: ajaya.bhattarai@mmamc.tu.edu.np
The title compound, bis[dithiobis(formamidinium)] hexabromidoruthenium dibromide trihydrate, [(NH2)2CSSC(NH2)2]2[RuBr6]Br2·3H2O, crystallizes in the orthorhombic system, Cmcm, Z = 4. The [RuBr6]2− anionic complex has an octahedral structure. The Ru—Br distances fall in the range 2.4779 (4)–2.4890 (4) Å. The S—S and C—S distances are 2.0282 (12) and 1.783 (2) Å, respectively. The H2O molecules, Br− ions, and NH2 groups of the cation are linked by hydrogen bonds. The conformation of the cation is consolidated by intramolecular O—H⋯Br, O—H⋯O, N—H⋯Br and N—H⋯O hydrogen bonds. The [(NH2)2CSSC(NH2)2]2+ cations form a hydrogen-bonded system involving the Br − ions and the water molecules. Two Br − anions form four hydrogen bonds, each with the NH2 groups of two cations, thus linking the cations into a ring. The rings are connected by water molecules, forming N—H⋯O—H⋯Br hydrogen bonds.
Keywords: crystal structure; ruthenium halido complexes; anions; cations; αα′-(dithiobisformamidinium) cation.
CCDC reference: 2370115
1. Chemical context
Oxidation of thiocarbamide in an acidic medium results in the αα′-(dithiobisformamidinium) cation {[(NH2)2CSSC(NH2)2]2+ or [S2C2(NH2)4]2+ in a simplified form; Preisler & Berger, 1947}. There are only a few examples of compounds containing [S2C2(NH2)4]2+ cations described in the literature. For example, direct interaction of compounds with [S2C2(NH2)4]Cl2 in concentrated hydrochloric acid produced [S2C2(NH2)4][MCl4], M = Cu, Co, Zn, Hg (Golovnev et al., 2013), [S2C2(NH2)4]2[Hg2Cl8] (Vasiliev et al., 2013) and [S2C2(NH2)4]2[OsIVCl6]Cl2·3H2O (Rudnitskaya et al., 2019), while changing the reaction medium to concentrated hydrobromic acid resulted in the formation of [S2C2(NH2)4][HgBr4] (Golovnev et al., 2013).
From the point of view of synthetic coordination chemistry, the reactions of rhenium and osmium complexes with thiocarbamide are of interest. These reactions led to compounds with an outer sphere dithiobisformamidinium cation. Thus, the interaction of ReO4− with thiocarbamide (tu) in hydrochloric acid allows the preparation of complexes [S2C2(NH2)4][ReCl4(H2O)O], [S2C2(NH2)4]2[ReCl5(H2O)]Cl3·2H2O and [S2C2(NH2)4]2[ReCl5(tu)]Cl (Lis, 1979, 1980; Lis & Starynowicz, 1985). In this case, oxidation of thiourea (hereinafter, tu) occurs by rhenium(VII). When K2[ReCl6] reacts with tu in dilute HCl, thiocarbamide oxidation occurs under the influence of atmospheric oxygen, giving [S2C2(NH2)4]2[ReCl6]Cl2·3H2O (Lis & Starynowicz, 1985). Similar complexes [S2C2(NH2)4]2[OsX6]X2·3H2O where X = Cl, Br were obtained by the reaction of H2[OsX6] and tu in concentrated HCl and HBr, respectively. In the aforementioned case, thiocarbamide was oxidized by osmium(IV) (Rudnitskaya et al., 2008, 2019). The molecular and crystal structures of the rhenium and osmium complexes discussed above were established by X-ray diffraction. The interaction of K4[Ru2OCl10] with α,α′-(dithiobisformamidinium) chloride forms the unique ruthenium(III) compound [Ru2(tu)3Cl6]·2H2O, containing three tu bridging molecules (Rudnitskaya et al., 2017a). The structure of [Cl3Ru(tu)3RuCl3] will be published elsewhere.
This study aimed to investigate the interaction between ruthenium compounds and αα′-bis(dithiobisformamidinium) bromide in hydrobromic acid solutions.
2. Structural commentary
The title compound (Fig. 1) is isostructural to the similar osmium complex (Rudnitskaya et al., 2008, 2019). In the α,α′-(dithiobisformamidinium) cation, the S—S bond is single and has a length of 2.0282 (12) Å, while in the osmium complex the length of this bond is 2.039 (2) Å. The cation adopts the most energetically favorable with a C—S—S—C torsion angle of 97.15 (11)°, which is slightly smaller than the angle in the osmium analogue (102.62°). The intrinsic symmetry of the cations is C2, and the thiocarbamide fragments retain a planar structure in both complexes. The intrinsic symmetry of the [RuBr6]2– ion is D2h. The of ruthenium is 6, and the anion takes the form of a distorted octahedron, d(Ru—Br) = 2.4779 (4)–2.4890 (4) Å for three Br atoms are different, but within standard errors (Table 1). The conformation of the cation is aslo consolidated by intramolecular N—H⋯S hydrogen bonds (Table 2, Fig. 1). In [(NH2)2CSSC(NH2)2]2[OsBr6]Br2·3H2O, the conformation of the cation is also stabilized by intramolecular N—H⋯S hydrogen bonds (Rudnitskaya et al., 2008). The geometric parameters of the title compound are normal and consistent with those of the related compounds described in the Database survey (Section 4).
3. Supramolecular features
The [(NH2)2CSSC(NH2)2]2+ cations and [RuBr6]2– complex anion form a system of hydrogen bonds with the Br− ions and water molecules (Table 2, Figs. 1 and 2). Two cations are bound in a ring by two Br− ions, each forming four hydrogen bonds with the NH2 groups of the cations. A similar system of hydrogen bonds is present in the osmium complex.
For two O—H⋯Br hydrogen bonds [O1—H1C⋯Br3 and O2—H2⋯Br4v, symmetry code: (v) x − , y + , z], the average distance of H⋯Br is 3.356 (3) Å and the average value of the O—H⋯Br angle is 161 (4)°. For four N—H⋯Br hydrogen bonds [N1—H1B⋯Br4, N2—H2B⋯Br1iii, N2—H2A⋯Br2iv, N2—H2B⋯Br4, symmetry codes: (iii) −x + 1, −y + 1, z − ; (iv) x, −y + 1, −z + 1], the average H⋯Br distance is 3.468 (3) Å and the average N—H⋯Br angle is 141 (3)°. These values show that hydrogen bonds are quite strong.
4. Database survey
A search of the Cambridge Crystallographic Database (updated 20 March 2023; Groom et al., 2016) using the [RuBr6]2– complex ion and the αα′-bis(dithiobisformamidinium) cation as the search fragments revealed five closely related compounds, viz. bis[α,α′-dithiobis(formamidinium)] hexabromidoosmium(IV) dibromide trihydrate (CSD refcode XAJVUB; Rudnitskaya et al., 2008), bis[disulfanediylbis(aminomethaniminium)] bis(chloride) hexachloridoosmium(IV) trihydrate (NIPBIA; Rudnitskaya et al., 2019), bis[disulfanediylbis(aminomethaniminium)] bis(bromide) hexabromidoosmium(IV) trihydrate (NIPBOG; Rudnitskaya et al., 2019), bis[(diaminomethylene)sulfonium] hexachloridoosmium (PATCIZ; Rudnitskaya et al., 2017b) and bis[(diaminomethylene)sulfonium] hexabromidoosmium (PATCOF; Rudnitskaya et al., 2017b).
XAJVUB, NIPBIA and NIPBOG crystallize in the orthorhombic Cmcm with Z = 4, while PATCIZ and PATCOF crystallize in the triclinic P with Z = 1. In XAJVUB, the [OsBr6] 2– anionic complex has an octahedral structure. The Os—Br distances fall in the range 2.483–2.490 Å. The α,α′-dithiobisformamidinium cation is a product of the oxidation of thiocarbamide. The S—S and C—S distances are 2.016 and 1.784 Å, respectively. The water molecules, Br− ions, and NH2 groups of the cation are linked by hydrogen bonds. In NIPBIA and NIPBOG, the osmium atoms in the [OsX6] 2− (X = Cl or Br) anions adopt slightly distorted octahedral coordination. The α,α′-dithiobisformamidinium cations are paired into rings by N—H⋯Cl− hydrogen bonds. The rings are further connected into a 3D framework by hydrogen bonds involving the water molecules and S⋯Cl non-covalent interactions. In the crystal structures of PATCIZ and PATCOF, the (NH2)2CSH+ cations and [OsX6]2− anions are linked into two-tier layers in the (110) plane by the N—H⋯X(Cl, Br) and S—H⋯X(Cl, Br) hydrogen bonds and S⋯X(Cl, Br) non-covalent attractive contacts. It can be seen from the similar geometric parameter values given in Table 3 that the discussed compounds are comparable with each other.
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5. Synthesis and crystallization
Synthesis of [(NH2)2CSSC(NH2)2]2[RuBr6]Br2·3H2O
To 0.10 g of K4[Ru2OCl10], 10 mL of concentrated HBr (from Riedel de Haen) were added, and the reaction mixture was heated in a water bath until the K4[Ru2OCl10] dissolved completely. Then a solution of 0.13 g of [S2C2(NH2)4]Br2·2H2O (molar ratio Ru:[S2C2(NH2)4]Br2 = 1:1.5) was added, and the resulting solution was evaporated in a water bath to 2–3 ml. Dark, large orthorhombic crystals formed after the solution was cooled. The precipitate was filtered off, and washed with 3 ml of distilled water and 4 ml of ethanol. The mass of the obtained solid was 0.10 g (yield: 67%). Found Ru = 9.6%, for [S2C2(NH2)4]2[RuBr6]Br2·3H2O: calculated Ru = 9.67%. Sulfur and bromine were determined by microanalysis, and ruthenium was determined by reducing the sample to metallic ruthenium in a stream of H2 at 1073 K. Errors between the found and measured values are normal depending on the technique used.
The compound is highly soluble in DMSO, giving blue solutions, while in dilute and concentrated HBr it dissolves over time (red and orange solutions, respectively) and is insoluble in alcohol and acetone.
EAS [λmax, nm (ɛ, mol−1 L cm−1)]: in HBr (2 mol L−1) – 400 (1800), 460 (1550), 560sh (720); in HBr (9 mol L−1) – 375sh (2850), 390 (2830), 440sh (2050), 455 (2450), 465sh (2400), 520sh (800); in DMSO – 390sh (6700), 480sh (2000), 505sh (2800), 555 (3930), 619 (4060), 686 (3980), 710sh (3000), 755sh (1900).
FTIR (ν, cm−1): 183, 230 ν (Ru—Br); 422 ρ(SCN2), ρ(NH2); 497 δ(CN2); 577 b(SCN2), ν(CS); 815 ν(CS), νs(CN), δ(CN2); 1063 ρ(NH2), νas(CN); 1119, 1385 νs(CN), ν(CS), ρ(NH2); 1621, 1627, 1645 δ(NH2), δ(OH2), νas(CN); 3050 ν(NH), 3260, 3400 νas(NH), ν(OH).
The reaction with K4[Ru2OCl10] was carried out similarly at a ratio of Ru:[S2C2(NH2)4]2+ = 1:2, and reactions with ruthenium trichlorides were carried out using ratios of reactants of 1:1.5 and 1:2.
As a result of all experiments, [S2C2(NH2)4]2[RuBr6]Br2·3H2O precipitates formed, but when the ratio of the initial components was 1:2, the precipitates contained an admixture of [S2C2(NH2)4]Br2·2H2O.
6. Refinement
Crystal data, data collection and structure . All hydrogen atoms were derived from the Fourier synthesis map and refined isotopically with dependent isotropic thermal parameters with Uiso(H) = 1.2Ueq(N) and Uiso(H) = 1.5Ueq(O).
details are summarized in Table 4
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Supporting information
CCDC reference: 2370115
https://doi.org/10.1107/S2056989024006832/ny2005sup1.cif
contains datablock I. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S2056989024006832/ny2005Isup2.hkl
(C2H8N4S2)2[RuBr6]Br2·3H2O | Dx = 2.646 Mg m−3 |
Mr = 1098.88 | Mo Kα radiation, λ = 0.71073 Å |
Orthorhombic, Cmcm | Cell parameters from 1291 reflections |
a = 11.6462 (3) Å | θ = 2.3–26.6° |
b = 13.9943 (4) Å | µ = 12.49 mm−1 |
c = 16.9225 (5) Å | T = 150 K |
V = 2758.04 (13) Å3 | Plate, black |
Z = 4 | 0.30 × 0.20 × 0.02 mm |
F(000) = 2056 |
Bruker D8 Venture diffractometer | 2057 reflections with I > 2σ(I) |
Radiation source: microsource | Rint = 0.043 |
φ and ω scans | θmax = 30.5°, θmin = 2.3° |
Absorption correction: multi-scan (SADABS; Krause et al., 2015) | h = −16→16 |
Tmin = 0.043, Tmax = 0.100 | k = −19→20 |
22642 measured reflections | l = −24→24 |
2269 independent reflections |
Refinement on F2 | Primary atom site location: difference Fourier map |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.023 | Hydrogen site location: difference Fourier map |
wR(F2) = 0.057 | Only H-atom coordinates refined |
S = 1.07 | w = 1/[σ2(Fo2) + (0.0237P)2 + 6.898P] where P = (Fo2 + 2Fc2)/3 |
2269 reflections | (Δ/σ)max = 0.001 |
93 parameters | Δρmax = 1.06 e Å−3 |
1 restraint | Δρmin = −0.59 e Å−3 |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
x | y | z | Uiso*/Ueq | ||
Ru1 | 0.500000 | 0.65423 (2) | 0.750000 | 0.01754 (8) | |
Br1 | 0.500000 | 0.77930 (2) | 0.85365 (2) | 0.02178 (8) | |
Br2 | 0.500000 | 0.52583 (2) | 0.64822 (2) | 0.02559 (8) | |
Br3 | 0.28649 (3) | 0.65551 (2) | 0.750000 | 0.02565 (9) | |
Br4 | 0.500000 | 0.17169 (2) | 0.58416 (2) | 0.02717 (9) | |
S1 | 0.18284 (5) | 0.47494 (4) | 0.55623 (4) | 0.02521 (13) | |
N1 | 0.2957 (2) | 0.33273 (17) | 0.61812 (15) | 0.0280 (5) | |
H1A | 0.264 (3) | 0.353 (2) | 0.657 (2) | 0.034* | |
H1B | 0.330 (3) | 0.285 (2) | 0.616 (2) | 0.034* | |
N2 | 0.3321 (2) | 0.35163 (17) | 0.48633 (16) | 0.0329 (5) | |
H2A | 0.331 (3) | 0.386 (3) | 0.443 (2) | 0.039* | |
H2B | 0.380 (3) | 0.310 (2) | 0.489 (2) | 0.039* | |
C1 | 0.2816 (2) | 0.37771 (17) | 0.55165 (16) | 0.0241 (5) | |
O1 | 0.2061 (2) | 0.4299 (2) | 0.750000 | 0.0305 (6) | |
H1C | 0.249 (4) | 0.478 (3) | 0.750000 | 0.046* | |
H1D | 0.136 (3) | 0.445 (4) | 0.750000 | 0.046* | |
O2 | 0.000000 | 0.5321 (3) | 0.750000 | 0.0360 (9) | |
H2 | 0.000000 | 0.579 (4) | 0.709 (3) | 0.054* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Ru1 | 0.01735 (16) | 0.01668 (16) | 0.01860 (17) | 0.000 | 0.000 | 0.000 |
Br1 | 0.02324 (15) | 0.02066 (15) | 0.02144 (16) | 0.000 | 0.000 | −0.00283 (11) |
Br2 | 0.03078 (18) | 0.02150 (16) | 0.02447 (17) | 0.000 | 0.000 | −0.00468 (12) |
Br3 | 0.01777 (15) | 0.02213 (16) | 0.0371 (2) | −0.00096 (11) | 0.000 | 0.000 |
Br4 | 0.02496 (16) | 0.02304 (16) | 0.0335 (2) | 0.000 | 0.000 | 0.00104 (13) |
S1 | 0.0280 (3) | 0.0238 (3) | 0.0238 (3) | 0.0043 (2) | 0.0033 (2) | 0.0016 (2) |
N1 | 0.0287 (11) | 0.0256 (11) | 0.0298 (12) | 0.0040 (8) | 0.0033 (9) | 0.0043 (9) |
N2 | 0.0370 (13) | 0.0272 (11) | 0.0345 (13) | 0.0063 (10) | 0.0128 (11) | 0.0034 (10) |
C1 | 0.0228 (11) | 0.0199 (10) | 0.0295 (13) | −0.0019 (9) | 0.0023 (9) | 0.0015 (9) |
O1 | 0.0329 (14) | 0.0254 (13) | 0.0333 (15) | 0.0003 (11) | 0.000 | 0.000 |
O2 | 0.042 (2) | 0.032 (2) | 0.035 (2) | 0.000 | 0.000 | 0.000 |
Ru1—Br1 | 2.4779 (4) | N1—H1A | 0.80 (4) |
Ru1—Br1i | 2.4779 (4) | N1—H1B | 0.77 (3) |
Ru1—Br3ii | 2.4866 (3) | N2—C1 | 1.305 (3) |
Ru1—Br3 | 2.4866 (3) | N2—H2A | 0.88 (4) |
Ru1—Br2i | 2.4890 (4) | N2—H2B | 0.81 (3) |
Ru1—Br2 | 2.4890 (4) | O1—H1C | 0.84 (3) |
S1—C1 | 1.783 (2) | O1—H1D | 0.84 (3) |
S1—S1iii | 2.0282 (12) | O2—H2 | 0.95 (5) |
N1—C1 | 1.299 (3) | ||
Br1—Ru1—Br1i | 90.122 (19) | Br3—Ru1—Br2 | 90.298 (8) |
Br1—Ru1—Br3ii | 89.708 (8) | Br2i—Ru1—Br2 | 87.58 (2) |
Br1i—Ru1—Br3ii | 89.708 (8) | C1—S1—S1iii | 102.90 (9) |
Br1—Ru1—Br3 | 89.708 (8) | C1—N1—H1A | 119 (2) |
Br1i—Ru1—Br3 | 89.708 (8) | C1—N1—H1B | 117 (3) |
Br3ii—Ru1—Br3 | 179.17 (2) | H1A—N1—H1B | 124 (4) |
Br1—Ru1—Br2i | 91.151 (12) | C1—N2—H2A | 123 (2) |
Br1i—Ru1—Br2i | 178.727 (16) | C1—N2—H2B | 117 (3) |
Br3ii—Ru1—Br2i | 90.298 (8) | H2A—N2—H2B | 117 (3) |
Br3—Ru1—Br2i | 90.298 (8) | N1—C1—N2 | 122.7 (2) |
Br1—Ru1—Br2 | 178.729 (16) | N1—C1—S1 | 114.4 (2) |
Br1i—Ru1—Br2 | 91.150 (12) | N2—C1—S1 | 122.8 (2) |
Br3ii—Ru1—Br2 | 90.298 (8) | H1C—O1—H1D | 112 (5) |
S1iii—S1—C1—N1 | −179.53 (18) | S1iii—S1—C1—N2 | −2.0 (2) |
Symmetry codes: (i) x, y, −z+3/2; (ii) −x+1, y, −z+3/2; (iii) x, −y+1, −z+1. |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1A···O1 | 0.80 (4) | 2.02 (4) | 2.814 (3) | 167 (3) |
O1—H1C···Br3 | 0.84 (3) | 2.52 (3) | 3.293 (3) | 154 (4) |
O1—H1D···O2 | 0.84 (3) | 2.00 (4) | 2.794 (4) | 157 (5) |
N1—H1B···Br4 | 0.77 (3) | 2.60 (4) | 3.327 (2) | 157 (3) |
N2—H2B···Br1iv | 0.81 (3) | 2.96 (4) | 3.496 (2) | 125 (3) |
N2—H2A···Br2iii | 0.88 (4) | 2.79 (4) | 3.456 (2) | 134 (3) |
N2—H2B···Br4 | 0.81 (3) | 2.87 (4) | 3.592 (3) | 149 (3) |
O2—H2···Br4v | 0.95 (5) | 2.48 (5) | 3.419 (2) | 167 (4) |
Symmetry codes: (iii) x, −y+1, −z+1; (iv) −x+1, −y+1, z−1/2; (v) x−1/2, y+1/2, z. |
Compound | S—S | C—S | C—S—S | C—S—S—C | Reference |
Title compound | 2.0282 (12) | 1.783 (2) | 102.90 (9) | -95.15 (11) | This study |
XAJVUB | 2.024 (2) | 1.778 (5) | 103.2 (2) | 96.3 | (Rudnitskaya et al., 2008) |
NIPBIA | 2.036 (2) | 1.789 (5) | 102.43 (17) | -96.4 (4) | (Rudnitskaya et al., 2019) |
NIPBOG | 2.039 (2) | 1.796 (5) | 102.62 (15) | -97.9 (3) | (Rudnitskaya et al., 2019) |
PATCIZ | – | 1.739 (10) | – | – | (Rudnitskaya et al., 2017b) |
PATCOF | – | 1.751 (9) | – | – | (Rudnitskaya et al., 2017b) |
Acknowledgements
Authors' contributions are as follows. Conceptualization, OVR, MRK and MA; methodology, DSP and MGP; investigation, DSP and MRK; writing (original draft), MA, AB and ANK, writing (review and editing of the manuscript), IGM and ANK; visualization, MA, OVR, and IGM; funding acquisition, AB and OVR; resources, AB, and MA; supervision, MA and ANK.
Funding information
Funding for this research was provided by: Baku State University and the RUDN University Strategic Academic Leadership Program.
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