research communications
A new hydrated crystalline form of N-[(E)-(4-hydroxyphenyl)methylidene]-1H-1,2,4-triazol-3-amine and its antifungal activity
aUnité de Recherche de Chimie de l'Environnement et Moléculaire Structurale (URCHEMS), Département de Chimie, Université Mentouri de Constantine, 25000 Constantine, Algeria, bSynchrotron SOLEIL, L'Orme des Merisiers, BP48, Saint Aubin, 91192, Gif-sur-Yvette, France, and cLaboratoire de Cristallographie, Résonance Magnétique et Modélisation, CRM2. UMR 7036, Institut Jean Barriol Faculté des Sciences et Technologies, BP 70239, 54506 Vandoeuvre lès Nancy, France
*Correspondence e-mail: cherouana.aouatef@umc.edu.dz
The synthesis, bc plane, built on the basis of rings with the graph-set motifs R44(8) and R44(24). The is further consolidated by π–π interactions between similar rings. The antifungal activity of the Schiff base was evaluated against three fungi: Fusarium oxysporum, Botrytis cinerea, and Alternaria alternata, showing significant antifungal activity, particularly against Alternaria alternata.
Hirshfeld analysis, and antifungal assessment of a new monohydrated Schiff base with a triazole moiety are reported. The structural study revealed the presence of three significant hydrogen bonds (N—H⋯N, O—H⋯N, and O—H⋯O), which contribute to the cohesion of the crystal. These bonds generate two-dimensional layers parallel to theKeywords: Schiff bases; single-crystal; X-ray diffraction; hydrogen bonding; intermolecular interactions; Hirshfeld surface analysis; antifungal activity.
CCDC reference: 2409810
1. Chemical context
Plant fungal diseases represent a major obstacle to agricultural development, leading to substantial economic losses. Chemical fungicides remain widely used as effective and affordable solutions for the prevention and control of these diseases. Research is currently focused on developing new pesticide molecules with broad biological activity, high efficacy, and low toxicity (Bai et al., 2019).
Our team aims to synthesize new molecules with promising applications, particularly in the biological field, such as antimicrobial and antifungal agents. To this end, various aromatic et al., 2022; Benarous et al., 2022; Maza et al., 2020; Bouhidel et al., 2018). This family of compounds contains an imine (–C=N–) formed by the condensation of primary and They are of great interest due to their diverse synthetic and biological applications (Kirubavathy et al., 2017). These compounds can exist in two tautomeric forms, enol and ketone, due to intramolecular proton transfer, and their C=N bond is crucial for various biological activities, including antibacterial and antifungal properties (Wu et al., 2019; PrabhuKumar et al., 2022; Kumar et al., 2023). Studies on the characteristics of these compounds affected by molecular geometry, and have led to the synthesis and investigation of numerous Schiff bases.
have been previously studied and reported (Moussa SlimaneIn this paper, we present the synthesis, structural characterization, Hirshfeld surface analysis, and antifungal properties of a new Schiff base, N-[(E)-(4-hydroxyphenyl)methylidene]-1H-1,2,4-triazol-3-amine, which was obtained through a one-step reflux reaction (see the Synthesis and crystallization section).
2. Structural commentary
The ). The Schiff base adopts an (E) conformation relative to the N4=C7 imine bond, displaying a torsion angle of 172.5 (2)°. Bond lengths and angles (Table 1) are consistent with those observed in previously reported similar structures (Maza et al., 2020; Kołodziej et al., 2019; Bouhidel et al., 2018). The molecule is relatively planar, with a dihedral angle of 17.68 (8)° between the two aromatic rings.
of the monohydrated title compound (L1) is based on two aromatic rings connected by an azomethine group. These rings consist of a benzene ring and a 1,2,4-triazole ring, with the benzene ring mono-para-substituted by a hydroxyl group (Fig. 1
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3. Supramolecular features
The ). The N—H⋯N hydrogen bond forms between the nitrogen atom of the triazole (N1) and the azomethine nitrogen (N4), creating infinite chains that extend along the b-axis direction (Fig. 2). The combination of this hydrogen bond with those involving the water molecule (O—H⋯O and O—H⋯N) generates two-dimensional layers parallel to the bc plane, based on rings with R44(8) and R44(24) graph-set motifs (Etter et al., 1990; Bernstein et al., 1995) (Fig. 3). The is further consolidated by π–π interactions between similar rings (Fig. 4) with centroid–centroid distances of 3.7638 (15) Å.
of (L1) is consolidated by N—H⋯N, O—H⋯O, and O—H⋯N hydrogen bonds (Table 24. Database survey
A search of the Cambridge Structural Database (CSD, version 5.45, March 2024 update; Groom et al., 2016) using the Schiff base framework incorporating a 1,2,4-triazole yielded only four results. Among these, two compounds from our team's work were identified, featuring a bromine substituent replacing the hydroxyl group: TIVDUA (Maza et al., 2020). The remaining three results: PEVXAS (Brink et al., 2018), TIVFAI (Kolodziej et al., 2019), and UZOKIE (Chohan & Hanif, 2011) contain structures similar to the one reported in this article, with different substituents such as methyl, bromine, and/or hydroxyl. The compounds were characterized using a range of spectroscopic techniques, including FTIR, UV-Vis, and NMR, and their structures were determined by single-crystal X-ray diffraction. These four studies highlight the significance of as versatile compounds with a wide array of applications. The synthesis and characterization of novel derived from 3-amino-1H-1,2,4-triazole opens up new possibilities for the development of potential therapeutic agents.
5. Hirshfeld surface analysis
To further analyze the intermolecular interactions, Hirshfeld surfaces (HS) were examined using graphical tools (Spackman & Jayatilaka, 2009; Spackman et al., 2021). Fig. 5 illustrates the Hirshfeld surface of the compound, mapped over dnorm, where the colors indicate different types of contacts: red areas represent shorter contacts, white areas denote contacts equal to the sum of van der Waals radii, and blue areas represent longer contacts. The compound exhibits a short intermolecular H⋯H contact, comprising approximately 35.8% of the total intermolecular interactions (Figs. 6 and 7). The 2D fingerprint plots reveal a notable contribution from H⋯N/N⋯H interactions, accounting for about 20.8%, shown by a pair of sharp peaks at around 1.8 Å. Moreover, O—H⋯O hydrogen bonds involving the water molecules contribute 16.6% to the interactions.
6. Synthesis and crystallization
All chemicals were commercially available, purchased from Sigma-Aldrich, and used as received without purification. To a solution of 4-hydroxybenzaldehyde (0.224 g, 2 mmol) in ethanol (15 mL), 3-amino-1H-1,2,4-triazole (0.168 g, 2 mmol) and a few drops of acetic acid were added. The reaction mixture was stirred under reflux at 373 K for 6 h. Following this, the whitish solution was cooled in an ice bath. The resulting crystalline powder was filtered, washed with ethanol, and dried under vacuum. Pure colorless crystals of (L1) were then obtained by recrystallization from a solvent mixture of acetonitrile and water.
7. Refinement
Crystal data, data collection and structure . All H atoms were located in difference electron-density maps and were treated as riding on their parent atoms.
details are summarized in Table 38. Antifungal activity
Triazole rings are well-known for their effectiveness against many phytopathogenic fungi (Colley et al., 2019; Herbrecht, 2004). In this work, the antifungal activity of the compound against three fungal strains is reported: Fusarium oxysporum, Botrytis cinerea, and Alternaria alternata. These fungi are known to cause various plant diseases. Standard antibiotics were used as positive controls (Carbendazim for Fusarium oxysporum, and Thiabendazole for both Botrytis cinerea and Alternaria alternata).
The evaluation of antifungal activity was conducted using the agar diffusion method, specifically the disc diffusion method, cultured in Potato Dextrose Agar (PDA) medium, with various concentrations of the compounds in 90 mm diameter Petri dishes. PDA was also used as a culture medium for the isolation, purification of strains, and for obtaining the inoculum, as it promotes rapid growth and abundant sporulation.
This study was performed in vitro, utilizing mycelial growth tests from young cultures aged one week on solid PDA medium (final volume of 20 ml). The tested compound was dissolved in DMSO to prepare three concentrations: 12.5, 25, and 50 µg ml−1. The tests were conducted in quadruplicate. Mycelial plugs (6 mm in diameter) were taken from the margins of the actively growing mycelium in each culture and placed in the center of Petri dishes containing PDA medium amended with the triazole-based Isolates of the three fungi were tested with a range of concentrations of the studied compound. The growth of each colony was measured along two perpendicular diameters, and the average radius of each colony was calculated by subtracting the radius of the initial inoculum disk. The percentage inhibition was then calculated using the following formula (Zhang et al., 2019).
Inhibition rate % = (diameter of control mycelium - diameter of treated mycelium)/(diameter of control mycelium x 100)
The best results obtained with the title compound were at a concentration of 12.5 µg ml−1, as reported in Table 4 and Fig. 8.
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The results of the inhibition activity assessment indicate that all three tested fungi are sensitive to the antifungal action of this Schiff base. Variations in inhibition were observed among the different fungal strains. The tested compound exhibits broad-spectrum activity, significantly inhibiting the mycelial growth of Alternaria alternata, with an inhibition percentage of 72.28%, which is very close to that of the positive control (79.8%).
For the other two fungi, Botrytis cinerea and Fusarium oxysporum, the most pronounced antifungal effect was observed with Fusarium oxysporum, which demonstrated an inhibition percentage of 36%. In contrast, Botrytis cinerea exhibited a lower inhibition percentage of 15.33%. The inhibition percentages obtained for these fungi are slightly lower than those of the positive control.
Supporting information
CCDC reference: 2409810
https://doi.org/10.1107/S205698902401209X/zn2040sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S205698902401209X/zn2040Isup2.hkl
Supporting information file. DOI: https://doi.org/10.1107/S205698902401209X/zn2040Isup3.cml
C9H10N4O2 | F(000) = 432 |
Mr = 206.21 | Dx = 1.499 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 11656 reflections |
a = 3.7638 (1) Å | θ = 2.7–30.5° |
b = 9.286 (3) Å | µ = 0.11 mm−1 |
c = 26.194 (2) Å | T = 100 K |
β = 93.786 (2)° | Prism, colourless |
V = 913.5 (3) Å3 | 0.10 × 0.10 × 0.09 mm |
Z = 4 |
Nonius KappaCCD diffractometer | 1890 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.052 |
Graphite monochromator | θmax = 30.5°, θmin = 2.7° |
Detector resolution: 18.4 pixels mm-1 | h = −5→3 |
ω scans | k = −13→13 |
11656 measured reflections | l = −37→36 |
2769 independent reflections |
Refinement on F2 | 0 restraints |
Least-squares matrix: full | Hydrogen site location: mixed |
R[F2 > 2σ(F2)] = 0.048 | H-atom parameters constrained |
wR(F2) = 0.139 | W = 1/[Σ2(FO2) + (0.0656P)2 + 0.0206P] WHERE P = (FO2 + 2FC2)/3 |
S = 1.10 | (Δ/σ)max < 0.001 |
2769 reflections | Δρmax = 0.36 e Å−3 |
139 parameters | Δρmin = −0.28 e Å−3 |
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell esds are taken into account in the estimation of distances, angles and torsion angles |
x | y | z | Uiso*/Ueq | ||
O1 | −0.1647 (3) | 0.88452 (11) | 0.47038 (4) | 0.0185 (3) | |
N1 | 0.4773 (3) | 0.06341 (13) | 0.25638 (5) | 0.0163 (3) | |
N2 | 0.4122 (3) | 0.20806 (13) | 0.25489 (5) | 0.0162 (3) | |
N3 | 0.3004 (3) | 0.11316 (13) | 0.33251 (5) | 0.0171 (4) | |
N4 | 0.2200 (3) | 0.37277 (13) | 0.31666 (5) | 0.0143 (3) | |
C1 | −0.1362 (4) | 0.76242 (16) | 0.44207 (6) | 0.0141 (4) | |
O1W | 0.4942 (3) | 0.14542 (12) | 0.44149 (4) | 0.0217 (3) | |
C2 | −0.2342 (4) | 0.62794 (15) | 0.45996 (6) | 0.0140 (4) | |
C3 | −0.1841 (4) | 0.50761 (16) | 0.43005 (5) | 0.0143 (4) | |
C4 | −0.0353 (4) | 0.51821 (16) | 0.38247 (6) | 0.0129 (4) | |
C5 | 0.0497 (4) | 0.65532 (16) | 0.36412 (6) | 0.0144 (4) | |
C6 | −0.0017 (4) | 0.77665 (16) | 0.39366 (6) | 0.0149 (4) | |
C7 | 0.0418 (4) | 0.38374 (15) | 0.35701 (6) | 0.0135 (4) | |
C8 | 0.3027 (4) | 0.23219 (16) | 0.30156 (6) | 0.0136 (4) | |
C9 | 0.4127 (4) | 0.01051 (17) | 0.30206 (6) | 0.0178 (4) | |
H1 | −0.23441 | 0.86312 | 0.49923 | 0.0280* | |
H1A | 0.55125 | 0.01248 | 0.23081 | 0.0200* | |
H2 | −0.33393 | 0.61887 | 0.49219 | 0.0170* | |
H3 | −0.25199 | 0.41572 | 0.44203 | 0.0170* | |
H5 | 0.14259 | 0.66495 | 0.33143 | 0.0170* | |
H6 | 0.05423 | 0.86934 | 0.38109 | 0.0180* | |
H7 | −0.04532 | 0.29740 | 0.37110 | 0.0160* | |
H9 | 0.44289 | −0.08761 | 0.31165 | 0.0210* | |
H1WA | 0.40240 | 0.13060 | 0.41063 | 0.0330* | |
H1WB | 0.64128 | 0.07412 | 0.44732 | 0.0330* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0281 (6) | 0.0130 (5) | 0.0149 (6) | 0.0007 (4) | 0.0050 (5) | −0.0020 (4) |
N1 | 0.0209 (6) | 0.0137 (6) | 0.0148 (6) | 0.0010 (5) | 0.0050 (5) | −0.0028 (5) |
N2 | 0.0209 (6) | 0.0135 (6) | 0.0146 (6) | −0.0006 (5) | 0.0043 (5) | −0.0012 (5) |
N3 | 0.0241 (6) | 0.0129 (6) | 0.0149 (7) | 0.0003 (5) | 0.0050 (5) | 0.0000 (5) |
N4 | 0.0170 (6) | 0.0129 (6) | 0.0132 (6) | 0.0005 (5) | 0.0015 (5) | −0.0023 (5) |
C1 | 0.0138 (6) | 0.0135 (7) | 0.0148 (7) | 0.0016 (5) | −0.0006 (5) | −0.0020 (6) |
O1W | 0.0299 (6) | 0.0187 (6) | 0.0164 (6) | 0.0037 (5) | 0.0005 (5) | 0.0000 (4) |
C2 | 0.0145 (6) | 0.0158 (7) | 0.0120 (7) | 0.0017 (5) | 0.0035 (5) | 0.0005 (5) |
C3 | 0.0146 (6) | 0.0145 (7) | 0.0137 (7) | −0.0001 (6) | 0.0014 (5) | 0.0017 (5) |
C4 | 0.0123 (6) | 0.0138 (7) | 0.0127 (7) | 0.0005 (5) | 0.0007 (5) | −0.0019 (5) |
C5 | 0.0164 (7) | 0.0138 (7) | 0.0132 (7) | 0.0006 (5) | 0.0027 (6) | 0.0006 (5) |
C6 | 0.0173 (7) | 0.0119 (7) | 0.0157 (7) | −0.0008 (5) | 0.0022 (6) | 0.0015 (6) |
C7 | 0.0135 (6) | 0.0130 (7) | 0.0137 (7) | −0.0018 (5) | −0.0002 (5) | −0.0008 (5) |
C8 | 0.0149 (6) | 0.0129 (7) | 0.0130 (7) | −0.0014 (5) | 0.0012 (5) | −0.0008 (5) |
C9 | 0.0238 (7) | 0.0144 (7) | 0.0158 (8) | 0.0012 (6) | 0.0049 (6) | 0.0006 (6) |
O1—C1 | 1.3629 (19) | C3—C4 | 1.403 (2) |
N1—N2 | 1.3655 (18) | C4—C5 | 1.405 (2) |
N1—C9 | 1.331 (2) | C4—C7 | 1.454 (2) |
O1—H1 | 0.8400 | C5—C6 | 1.388 (2) |
N2—C8 | 1.335 (2) | O1W—H1WB | 0.8700 |
N3—C8 | 1.371 (2) | O1W—H1WA | 0.8700 |
N3—C9 | 1.330 (2) | C2—H2 | 0.9500 |
N4—C7 | 1.293 (2) | C3—H3 | 0.9500 |
N4—C8 | 1.405 (2) | C5—H5 | 0.9500 |
C1—C6 | 1.402 (2) | C6—H6 | 0.9500 |
N1—H1A | 0.8800 | C7—H7 | 0.9500 |
C1—C2 | 1.392 (2) | C9—H9 | 0.9500 |
C2—C3 | 1.385 (2) | ||
N2—N1—C9 | 110.23 (12) | N2—C8—N3 | 114.88 (13) |
C1—O1—H1 | 109.00 | N2—C8—N4 | 120.10 (13) |
N1—N2—C8 | 101.81 (12) | N3—C8—N4 | 124.92 (14) |
C8—N3—C9 | 102.04 (13) | N1—C9—N3 | 111.04 (14) |
C7—N4—C8 | 116.10 (12) | H1WA—O1W—H1WB | 105.00 |
O1—C1—C6 | 117.37 (13) | C1—C2—H2 | 121.00 |
C2—C1—C6 | 120.56 (14) | C3—C2—H2 | 121.00 |
C9—N1—H1A | 125.00 | C4—C3—H3 | 119.00 |
O1—C1—C2 | 122.07 (14) | C2—C3—H3 | 119.00 |
N2—N1—H1A | 125.00 | C4—C5—H5 | 120.00 |
C1—C2—C3 | 118.97 (14) | C6—C5—H5 | 120.00 |
C2—C3—C4 | 121.55 (14) | C5—C6—H6 | 120.00 |
C3—C4—C5 | 118.73 (14) | C1—C6—H6 | 120.00 |
C3—C4—C7 | 116.79 (13) | N4—C7—H7 | 118.00 |
C5—C4—C7 | 124.36 (14) | C4—C7—H7 | 118.00 |
C4—C5—C6 | 120.11 (14) | N1—C9—H9 | 124.00 |
C1—C6—C5 | 119.98 (14) | N3—C9—H9 | 124.00 |
N4—C7—C4 | 124.95 (13) | ||
C9—N1—N2—C8 | −1.03 (15) | C6—C1—C2—C3 | 2.5 (2) |
N2—N1—C9—N3 | 0.71 (17) | O1—C1—C6—C5 | 176.87 (14) |
N1—N2—C8—N3 | 1.06 (16) | C2—C1—C6—C5 | −2.9 (2) |
N1—N2—C8—N4 | 177.48 (12) | C1—C2—C3—C4 | 0.4 (2) |
C9—N3—C8—N2 | −0.67 (17) | C2—C3—C4—C5 | −2.8 (2) |
C9—N3—C8—N4 | −176.90 (14) | C2—C3—C4—C7 | 173.30 (14) |
C8—N3—C9—N1 | −0.05 (16) | C3—C4—C5—C6 | 2.3 (2) |
C8—N4—C7—C4 | 172.52 (14) | C7—C4—C5—C6 | −173.45 (15) |
C7—N4—C8—N2 | 164.83 (14) | C3—C4—C7—N4 | −170.48 (15) |
C7—N4—C8—N3 | −19.1 (2) | C5—C4—C7—N4 | 5.4 (2) |
O1—C1—C2—C3 | −177.31 (14) | C4—C5—C6—C1 | 0.5 (2) |
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1···O1Wi | 0.84 | 1.89 | 2.7060 (17) | 163 |
O1W—H1WA···N3 | 0.87 | 2.06 | 2.9147 (19) | 166 |
N1—H1A···N4ii | 0.88 | 2.03 | 2.895 (2) | 168 |
O1W—H1WB···O1iii | 0.87 | 1.98 | 2.8217 (18) | 161 |
C7—H7···N3 | 0.95 | 2.41 | 2.785 (2) | 103 |
Symmetry codes: (i) −x, −y+1, −z+1; (ii) −x+1, y−1/2, −z+1/2; (iii) x+1, y−1, z. |
Fusarium oxysporum | Botrytis cinerea | Alternaria alternata | |
12.5 µg ml-1 (L1) | 36.62±0.70 | 15.33±0.50 | 72.28±1.25 |
Carbendazim | 99.6±0.10 | – | – |
Thiabendazole | – | 99.1±1.30 | 79.8±0.45 |
Acknowledgements
The authors would like to express their gratitude to the Algerian Ministry of Higher Education and Scientific Research. We also extend our thanks to the team at the Biotechnology Research Center (CRBT) in Constantine.
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