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Syntheses, crystal structures, Hirshfeld surface analyses and crystal voids of 1-(4-bromophenyl)-2,2-dichloroethan-1-one and 2,2-dibromo-1-(p-tolyl)ethan-1-one
aExcellence Center, Baku State University, Z. Xalilov Str. 23, AZ 1148 Baku, Azerbaijan, bCentro de Quimica Estrutural, Instituto Superior Tecnico, Universidade de Lisboa, Av. Rovisco Pais, 1049-001 Lisbon, Portugal, cKosygin State University of Russia, 117997 Moscow, Russian Federation, dN. D. Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, 119991 Moscow, Russian Federation, eHacettepe University, Department of Physics, 06800 Beytepe-Ankara, Türkiye, fAzerbaijan Medical University, Scientific Research Centre (SRC), A. Kasumzade Str. 14, AZ 1022 Baku, Azerbaijan, gDepartment of Chemistry and Chemical Engineering, Khazar University, Mahzati Str. 41, AZ 1096 Baku, Azerbaijan, and hDepartment of Chemistry, Bahir Dar University, PO Box 79, Bahir Dar, Ethiopia
*Correspondence e-mail: alebel.nibret@bdu.edu.et
The asymmetric units of the compounds, C8H5BrCl2O (I), and C9H8Br2O (II), contain two and one crystallographically independent molecules, respectively. In compound (I), the planar rings are oriented at a dihedral angle of 13.23 (8)°. In crystals of both compounds, intermolecular C—H⋯O hydrogen bonds link the molecules into infinite chains along the b-axis direction. In crystal of (I), there are π–π interactions between the centroids of the parallel rings with centroid-to-centroid distances of 3.5974 (14), 3.6178 (16) and 3.9387 (16) Å while neither π–π nor C—H⋯ π(ring) interactions are present in (II). The Hirshfeld surface analyses of the crystal structures indicate that the most important contributions for the crystal packings are from H⋯Cl/Cl⋯H (27.5%), H⋯O/O⋯H (15.0%), H⋯Br/Br⋯H (10.2%) and H⋯H (9.0%) for (I) and H⋯Br/Br⋯H (36.1%), H⋯H (22.2%), H⋯O/O⋯H (14.1%) and H⋯C/C⋯H (13.9%) for (II). Hydrogen bonding and van der Waals interactions are the dominant interactions in the crystal packings. The volumes of the crystal voids and the percentages of free spaces in the unit cells were calculated to 111.55 Å3 and 12.27% for (I) and 63.37 Å and 6.69% for (II), showing that no large cavities are present in either structure.
Keywords: crystal structure; non-covalent interactions; hydrogen bond.
1. Chemical context
α-Haloketones are useful synthetic building blocks for the syntheses of pharmacologicals as well as complex organic molecules (Erian et al., 2003). In fact, the existence of two adjacent electrophilic centres, namely the α-halocarbon and carbonyl group, transforms these reactive into highly valuable building blocks for the construction of more complex structures (Guseinov et al., 2006
, 2017
, 2020
; Khalilov et al., 2024
). Over the past few decades, substantial advances have been made in the syntheses of these industrially relevant building blocks and synthetic precursors (Ma et al., 2021
; Mahmoudi et al., 2017
; Mizar et al., 2012
). Efforts have focused on rendering the synthetic protocols greener, more effective and versatile. Not only electron-withdrawing properties, but the halogen-bond-donor ability of the halogen atom(s) of α-haloketones can dictate their reactivity and other functional properties (Gurbanov et al., 2022
). For instance, recently we showed that the reaction of α,α-dihalo-β-oxoaldehydes with diaminofurazan at room temperature in an acetonitrile solution yields 20-membered macrocycles and N-(4-amino-1,2,5- oxodiazol-3-yl)formamide (Guseinov et al., 2024
). Herein, we found that when this reaction is carried out in a chloroform solution and at 353 K, both α-haloketones namely 1-(4-bromophenyl)-2,2-dichloroethan-1-one (I)
and 2,2-dibromo-1-(p-tolyl)ethan-1-one (II)
and N-(4-amino-1,2,5-oxadiazol-3-yl) formamide are formed. Herein, we have report on the syntheses and molecular and crystal structures of compounds (I)
and (II)
together with analyses of the Hirshfeld surfaces and crystal voids.
2. Structural commentary
The asymmetric units of compounds (I) and (II)
contains two and one crystallographically independent molecules, respectively (Fig. 1
). In compound (I)
, the planar, A (C3A–C8A) and B (C3B–C8B) rings are oriented at a dihedral angle of 13.23 (8)°. Atoms Br6A, C2A, C1A, O2A and Br6B and C2B are 0.0116 (3), 0.023 (3), −0.004 (3), 0.045 (2) Å and −0.0083 (3), −0.032 (3) Å, respectively, away from the best least-squares planes of the A and B rings. In compound (II)
, atoms Br1, C2 and C9 are 0.0426 (3), 0.058 (3) and 0.041 (3) Å, respectively, away from the best least-squares plane of ring A (C3–C8). All bond lengths and angles are normal in both compounds.
![]() | Figure 1 The asymmetric units of compounds (a) (I) ![]() ![]() |
3. Supramolecular features
In the crystals of both compounds, intermolecular C—H⋯O hydrogen bonds (Tables 1 and 2
) link the molecules into infinite chains along the b-axis direction (Fig. 2
). In crystal of (I)
, there are π–π interactions between the centroids of parallel A (C3A–C8A) rings and parallel B (C3B–C8B) rings with centroid-to-centroid distances of 3.5974 (14) Å for the A rings and 3.6178 (16) and 3.9387 (16) Å for the B rings. No such interactions occur in (II)
.
|
|
![]() | Figure 2 Partial packing diagrams for compounds (a) (I) ![]() ![]() |
4. Hirshfeld surface analysis
In order to visualize the intermolecular interactions in the title compounds, Hirshfeld surface (HS) analyses (Hirshfeld, 1977; Spackman & Jayatilaka, 2009
) were carried out using Crystal Explorer 17.5 (Spackman et al., 2021
). In the HS plotted over dnorm (Fig. 3
a and b), the white surfaces indicate contacts with distances equal to the sum of van der Waals radii, and the red and blue colours indicate distances shorter (in close contact) or longer (distinct contact) than the van der Waals radii, respectively (Venkatesan et al., 2016
). The bright-red spots indicate their roles as donors and/or acceptors; they also appear as blue and red regions corresponding to positive and negative potentials on the HS mapped over electrostatic potential (Spackman et al., 2008
; Jayatilaka et al., 2005
), as shown in Fig. 4
for compound (II)
. The π–π stacking interactions were further visualized by plotting the shape-index surface, which can be used to identify characteristic packing modes, in particular, planar stacking arrangements and the presence of aromatic stacking interactions such as C—H⋯π and π–π interactions. C—H⋯π interactions would be seen as red p-holes, which are related to the electron ring interactions between the CH groups with the centroids of the aromatic rings of neighbouring molecules. Fig. 5
clearly suggests that there are no C—H⋯π interactions in either compound. On the other hand, the shape-index of the HS is also a tool for visualizing π–π stacking by the presence of adjacent red and blue triangles; if there are no adjacent red and/or blue triangles, then there are no π–π interactions. Fig. 5
clearly suggests that there are π–π interactions in compound (I)
only.
![]() | Figure 3 Views of the three-dimensional Hirshfeld surfaces of compounds (a) (I) ![]() ![]() |
![]() | Figure 4 View of the three-dimensional Hirshfeld surface of compound (II) ![]() |
![]() | Figure 5 Hirshfeld surfaces of compounds (a) (I) ![]() ![]() |
The overall two-dimensional fingerprint plots (McKinnon et al., 2007) [Fig. 6
a for (I)
and Fig. 7
a for (II)], and those delineated into H⋯Cl/Cl⋯H, H⋯O/O⋯H, H⋯Br/Br⋯H, H⋯H, H⋯C/C⋯H, Cl⋯Br/Br⋯Cl, C⋯C, C⋯Br/Br⋯C, Cl⋯Cl, Br⋯Br, O⋯Br/Br⋯O, C⋯Cl/Cl⋯C and O⋯Cl/Cl⋯O interactions for (I)
and H⋯Br/Br⋯H, H⋯H, H⋯O/O⋯H, H⋯C/C⋯H, C⋯Br/Br⋯C, Br⋯Br, C⋯O/O⋯C and C⋯C interactions for (II)
are illustrated in Fig. 6
b–n and Fig. 7
b–i, respectively, together with their relative contributions to the Hirshfeld surfaces. The most important interactions(Tables 3
and 4
) are H⋯Cl/Cl ⋯ H for (I)
and H⋯Br/Br⋯H for (II)
contributing 27.5% and 36.1%, respectively, to the overall crystal packings, which are shown in Fig. 6
b and Fig. 7
b with the tips at de + di = 2.95 and 2.94 Å, respectively. The H⋯O/O⋯H contacts (Fig. 6
c and Fig. 7
d) contribute 15.0% and 14.1%, and they are viewed as the pairs of spikes with the tips at de + di = 2.08 and 2.10 Å, respectively. The H⋯Br/Br⋯H contacts in (I)
(Fig. 6
d) contribute 10.2% to the HS, and they are viewed as a pair of wings at de + di = 2.94 Å. The H⋯H contacts (Fig. 6
e and Fig. 7
c) have wide spreads of points, and are viewed at de = di = 1.40Å and 1.28 Å, respectively. In the absence of C—H⋯π interactions, the characteristic wings of the H⋯C/C⋯H contacts, contributing 8.1% and 13.9% to the overall crystal packings are seen in Fig. 6
f and Fig. 7
e with the tips at de + di = 3.24 and 2.78 Å, respectively. The tiny spikes of Cl⋯Br/Br⋯Cl for (I)
(Fig. 6
g), which contribute 7.2% to the HS are seen at de + di = 3.68 Å. The C⋯C contacts (Fig. 6
h and Fig. 7
i), contributing 6.5% and 0.3%, have arrow-shaped distributions of points at de = di = 1.66 Å for (I)
. The symmetrical pairs of C⋯Br/Br⋯C contacts (Fig. 6
i and Fig. 7
f) contribute 5.6% and 7.8% with the tips at de + di = 3.48 and 3.40 Å, respectively. The Cl⋯Cl contacts in (I)
(Fig. 6
j) have a bullet-shaped distribution of points with a 4.8% contribution to the HS, and the tip at de = di = 1.86 Å. The Br⋯Br contacts (Fig. 6
k and Fig. 7
g) contribute 2.7% and 4.2% and have a needle-shaped distributions of points, de = di = 1.74 and 1.88 Å, respectively. The O⋯Br/Br⋯O interactions in (I)
(Fig. 6
l) contribute 2.5% to the HS and have the tips at de + di =3.60 Å. Finally, the C⋯Cl/Cl⋯C (Fig. 6
m), O⋯Cl/Cl⋯O (Fig. 6
n) and C⋯O/O⋯C (Fig. 7
h) contacts with contributions of 0.4%, 0.2% and 0.7%, respectively, have very low densities.
|
|
![]() | Figure 6 The full two-dimensional fingerprint plots for compound (I) ![]() |
![]() | Figure 7 The full two-dimensional fingerprint plots for compound (II) ![]() |
The nearest neighbour coordination environment of a molecule can be determined from the colour patches on the HS based on how close to other molecules they are. The Hirshfeld surface representations of contact patches plotted onto the surfaces are shown for the H⋯Cl/Cl⋯H, H⋯O/O⋯H, H⋯Br/Br⋯H, H⋯H and H⋯C/C⋯H interactions in Fig. 8a–d and Fig. 9
a–d for both compounds (I)
and (II)
, respectively.
![]() | Figure 8 The Hirshfeld surface representations of contact patches for compound (I) ![]() |
![]() | Figure 9 The Hirshfeld surface representations of contact patches for compound (II) ![]() |
The Hirshfeld surface analyses confirms the importance of H-atom contacts in establishing the packings. The large number of H⋯Cl/Cl⋯H, H⋯O/O⋯H, H⋯Br/Br⋯H, H⋯H and H⋯C/C⋯H interactions suggest that van der Waals interactions and hydrogen bonding play the major roles in the crystal packing (Hathwar et al., 2015).
5. Crystal voids
The strength of the crystal packing is important for determining the response to an applied mechanical force. If the crystal packing results in significant voids, the molecules are not tightly packed and a small amount of applied external mechanical force may easily break the crystal. To check the mechanical stability of the crystal, a void analysis was performed by adding up the electron densities of the spherically symmetric atoms contained in the et al., 2011). The void surface is defined as an isosurface of the procrystal electron density and is calculated for the whole where the void surface meets the boundary of the and capping faces are generated to create an enclosed volume. The volumes of the crystal voids (Figs. 10
and 11
) and the percentages of free space in the unit cells were calculated to be 111.55 Å3 and 12.27%, respectively, for (I)
and 63.37 Å3 and 6.69% for (I)
. Thus, the crystal packings appear compact and the mechanical stability should be substantial.
![]() | Figure 10 Graphical views of voids in the crystal packing of compound (I) ![]() |
![]() | Figure 11 Graphical views of voids in the crystal packing of compound (II) ![]() |
6. Synthesis and crystallization
To a solution of 3-(4-bromophenyl)-2,2-dichloro-3-oxopropanal or 2,2-dibromo-3-oxo-3-(p-tolyl)propanal (1.00 mmol) in 20 ml of chloroform was added diaminofurazan (1.00 mmol) and the mixture was refluxed at 353 K for 1 h. Then, the chloroform was evacuated under vacuum; the remaining reaction mass was added to 20 ml of diethyl ether. The precipitated N-(4-amino-1,2,5-oxadiazol-3-yl)formamide (yield: 82 or 77%) was filtered off. The 1-(4-bromophenyl)-2,2- dichloroethan-1-one (I) or 2,2-dibromo-1-(p-tolyl)ethan-1-one (II)
was isolated (yield: 79 or 75%) from the filtrate. (I)
: 1H NMR (300 MHz, DMSO-d6): δ = 8.20 (d, 2H), 7.89 (s, 1H), 7.44 (d, 2H). 13C NMR (151 MHz, CDCl3) δ = 185.60, 145.87, 129.87, 129.65, 128.75, 67.84. (II)
: 1H NMR (300 MHz, DMSO-d6): δ = 8.21 (d, 2H), 7.75 (s, 1H), 7.30 (d, 2H), 2.35 (s, 3H). 13C NMR (151 MHz, CDCl3) δ = 184.95, 141.25, 131.25, 129.49, 129.30, 51.79, 21.85. N-(4-Amino-1,2,5- oxadiazol-3-yl)formamide: 1H NMR (300 MHz, DMSO-d6): δ = 10.40 (bd, 1H, NH), 8.75 (bd, 1H, CHO), 6.11 (bs, 2H, NH2).
7. Refinement
Crystal data, data collection and structure . The C-bond hydrogen-atom positions were calculated geometrically at distances of 1.00 Å (for methine CH), 0.95 Å (for aromatic CH) and 0.98 Å (for CH3) and refined using a riding model by applying the constraint of Uiso(H) = k × Ueq (C), where k = 1.5 for methyl H atoms and k = 1.2 for the other H atoms.
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Supporting information
https://doi.org/10.1107/S205698902500012X/nx2018sup1.cif
contains datablocks I, II, global. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S205698902500012X/nx2018Isup2.hkl
Structure factors: contains datablock II. DOI: https://doi.org/10.1107/S205698902500012X/nx2018IIsup3.hkl
C8H5BrCl2O | Z = 4 |
Mr = 267.93 | F(000) = 520 |
Triclinic, P1 | Dx = 1.890 Mg m−3 |
a = 7.0317 (1) Å | Cu Kα radiation, λ = 1.54184 Å |
b = 9.78938 (18) Å | Cell parameters from 19038 reflections |
c = 14.4440 (3) Å | θ = 4.7–79.0° |
α = 87.5944 (15)° | µ = 10.75 mm−1 |
β = 84.7254 (13)° | T = 100 K |
γ = 72.0372 (14)° | Prism, colorless |
V = 941.70 (3) Å3 | 0.35 × 0.21 × 0.16 mm |
XtaLAB Synergy, Dualflex, HyPix diffractometer | 4027 independent reflections |
Radiation source: micro-focus sealed X-ray tube, PhotonJet (Cu) X-ray Source | 3992 reflections with I > 2σ(I) |
Mirror monochromator | Rint = 0.041 |
Detector resolution: 10.0000 pixels mm-1 | θmax = 79.7°, θmin = 3.1° |
ω scans | h = −8→8 |
Absorption correction: gaussian (CrysAlisPro; Rigaku OD, 2024) | k = −12→12 |
Tmin = 0.169, Tmax = 1.000 | l = −18→18 |
24768 measured reflections |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.031 | H-atom parameters constrained |
wR(F2) = 0.085 | w = 1/[σ2(Fo2) + (0.048P)2 + 1.1375P] where P = (Fo2 + 2Fc2)/3 |
S = 1.10 | (Δ/σ)max = 0.003 |
4027 reflections | Δρmax = 0.63 e Å−3 |
218 parameters | Δρmin = −0.70 e Å−3 |
0 restraints | Extinction correction: SHELXL2018/3 (Sheldrick, 2015b), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: dual | Extinction coefficient: 0.0022 (2) |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
x | y | z | Uiso*/Ueq | ||
Br6A | 0.81615 (4) | 0.56770 (3) | 0.32820 (2) | 0.02069 (10) | |
Cl1A | 0.33348 (10) | 0.55329 (7) | 0.89875 (4) | 0.02549 (15) | |
Cl2A | 0.74935 (10) | 0.53706 (8) | 0.84399 (4) | 0.02822 (15) | |
O2A | 0.3354 (3) | 0.7709 (2) | 0.75703 (14) | 0.0284 (4) | |
C1A | 0.5180 (4) | 0.5343 (3) | 0.80452 (16) | 0.0175 (4) | |
H1A | 0.538721 | 0.440813 | 0.773449 | 0.021* | |
C2A | 0.4551 (4) | 0.6576 (3) | 0.73301 (17) | 0.0175 (4) | |
C3A | 0.5482 (3) | 0.6324 (2) | 0.63618 (16) | 0.0149 (4) | |
C4A | 0.4938 (4) | 0.7454 (3) | 0.57111 (18) | 0.0191 (5) | |
H4A | 0.402128 | 0.835143 | 0.590281 | 0.023* | |
C5A | 0.5718 (4) | 0.7276 (3) | 0.47965 (18) | 0.0194 (5) | |
H5A | 0.533876 | 0.803928 | 0.435599 | 0.023* | |
C6A | 0.7077 (3) | 0.5952 (3) | 0.45312 (16) | 0.0161 (4) | |
C7A | 0.7639 (3) | 0.4816 (2) | 0.51561 (16) | 0.0156 (4) | |
H7A | 0.856155 | 0.392344 | 0.495928 | 0.019* | |
C8A | 0.6835 (3) | 0.4999 (2) | 0.60758 (16) | 0.0141 (4) | |
H8A | 0.720183 | 0.422604 | 0.651044 | 0.017* | |
Br6B | 0.76334 (4) | 0.85069 (3) | 1.16685 (2) | 0.02310 (10) | |
Cl1B | 1.01787 (9) | 1.10238 (6) | 0.60398 (4) | 0.02204 (14) | |
Cl2B | 0.80524 (11) | 0.89180 (7) | 0.64724 (5) | 0.03046 (16) | |
O2B | 0.7017 (3) | 1.21469 (19) | 0.74989 (12) | 0.0218 (4) | |
C1B | 0.9394 (4) | 0.9975 (2) | 0.69302 (16) | 0.0170 (4) | |
H1B | 1.059740 | 0.932687 | 0.721540 | 0.020* | |
C2B | 0.7983 (3) | 1.0930 (2) | 0.76903 (16) | 0.0152 (4) | |
C3B | 0.7895 (3) | 1.0296 (2) | 0.86393 (16) | 0.0147 (4) | |
C4B | 0.7014 (4) | 1.1233 (3) | 0.93713 (17) | 0.0180 (5) | |
H4B | 0.646312 | 1.223144 | 0.924605 | 0.022* | |
C5B | 0.6938 (4) | 1.0718 (3) | 1.02798 (17) | 0.0204 (5) | |
H5B | 0.636309 | 1.135395 | 1.078017 | 0.024* | |
C6B | 0.7723 (4) | 0.9248 (3) | 1.04401 (16) | 0.0177 (4) | |
C7B | 0.8588 (4) | 0.8292 (3) | 0.97239 (18) | 0.0207 (5) | |
H7B | 0.910242 | 0.729156 | 0.985011 | 0.025* | |
C8B | 0.8688 (4) | 0.8826 (3) | 0.88192 (17) | 0.0192 (5) | |
H8B | 0.929655 | 0.818923 | 0.832274 | 0.023* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Br6A | 0.02097 (15) | 0.03124 (16) | 0.01216 (14) | −0.01176 (11) | −0.00107 (9) | 0.00224 (10) |
Cl1A | 0.0275 (3) | 0.0262 (3) | 0.0176 (3) | −0.0025 (2) | 0.0063 (2) | −0.0035 (2) |
Cl2A | 0.0248 (3) | 0.0411 (4) | 0.0190 (3) | −0.0092 (3) | −0.0068 (2) | 0.0002 (2) |
O2A | 0.0356 (10) | 0.0181 (9) | 0.0214 (9) | 0.0064 (8) | 0.0004 (8) | −0.0053 (7) |
C1A | 0.0193 (11) | 0.0176 (11) | 0.0118 (10) | −0.0005 (8) | 0.0017 (8) | −0.0028 (8) |
C2A | 0.0202 (11) | 0.0148 (10) | 0.0164 (11) | −0.0026 (8) | −0.0035 (9) | −0.0028 (8) |
C3A | 0.0160 (10) | 0.0132 (10) | 0.0159 (10) | −0.0046 (8) | −0.0028 (8) | −0.0025 (8) |
C4A | 0.0211 (11) | 0.0152 (10) | 0.0208 (12) | −0.0046 (9) | −0.0036 (9) | −0.0002 (9) |
C5A | 0.0214 (11) | 0.0163 (11) | 0.0207 (12) | −0.0053 (9) | −0.0054 (9) | 0.0035 (9) |
C6A | 0.0163 (10) | 0.0218 (11) | 0.0127 (10) | −0.0098 (9) | −0.0008 (8) | −0.0007 (9) |
C7A | 0.0150 (10) | 0.0170 (10) | 0.0148 (11) | −0.0044 (8) | −0.0019 (8) | −0.0010 (8) |
C8A | 0.0138 (10) | 0.0144 (10) | 0.0141 (10) | −0.0039 (8) | −0.0027 (8) | 0.0000 (8) |
Br6B | 0.02356 (16) | 0.03377 (17) | 0.01465 (15) | −0.01308 (11) | −0.00342 (10) | 0.00666 (10) |
Cl1B | 0.0306 (3) | 0.0205 (3) | 0.0144 (3) | −0.0082 (2) | 0.0030 (2) | 0.0001 (2) |
Cl2B | 0.0472 (4) | 0.0293 (3) | 0.0233 (3) | −0.0233 (3) | −0.0023 (3) | −0.0082 (2) |
O2B | 0.0258 (9) | 0.0166 (8) | 0.0184 (8) | −0.0011 (7) | 0.0011 (7) | 0.0020 (7) |
C1B | 0.0239 (11) | 0.0152 (10) | 0.0119 (10) | −0.0061 (9) | −0.0008 (9) | −0.0012 (8) |
C2B | 0.0165 (10) | 0.0146 (10) | 0.0147 (10) | −0.0046 (8) | −0.0020 (8) | −0.0020 (8) |
C3B | 0.0140 (10) | 0.0165 (10) | 0.0143 (10) | −0.0053 (8) | −0.0024 (8) | 0.0001 (8) |
C4B | 0.0219 (11) | 0.0152 (10) | 0.0181 (11) | −0.0071 (9) | −0.0018 (9) | −0.0015 (9) |
C5B | 0.0240 (12) | 0.0225 (12) | 0.0162 (11) | −0.0095 (9) | 0.0004 (9) | −0.0042 (9) |
C6B | 0.0187 (11) | 0.0250 (12) | 0.0119 (10) | −0.0101 (9) | −0.0038 (8) | 0.0034 (9) |
C7B | 0.0226 (12) | 0.0182 (11) | 0.0190 (12) | −0.0041 (9) | 0.0000 (9) | 0.0044 (9) |
C8B | 0.0199 (11) | 0.0169 (11) | 0.0172 (11) | −0.0011 (9) | 0.0016 (9) | −0.0020 (9) |
Br6A—C6A | 1.890 (2) | Br6B—C6B | 1.892 (2) |
Cl1A—C1A | 1.766 (2) | Cl1B—C1B | 1.766 (2) |
Cl2A—C1A | 1.781 (3) | Cl2B—C1B | 1.781 (2) |
O2A—C2A | 1.209 (3) | O2B—C2B | 1.210 (3) |
C1A—H1A | 1.0000 | C1B—H1B | 1.0000 |
C1A—C2A | 1.540 (3) | C1B—C2B | 1.542 (3) |
C2A—C3A | 1.486 (3) | C2B—C3B | 1.485 (3) |
C3A—C4A | 1.404 (3) | C3B—C4B | 1.398 (3) |
C3A—C8A | 1.403 (3) | C3B—C8B | 1.396 (3) |
C4A—H4A | 0.9500 | C4B—H4B | 0.9500 |
C4A—C5A | 1.380 (4) | C4B—C5B | 1.388 (4) |
C5A—H5A | 0.9500 | C5B—H5B | 0.9500 |
C5A—C6A | 1.397 (3) | C5B—C6B | 1.390 (4) |
C6A—C7A | 1.385 (3) | C6B—C7B | 1.389 (3) |
C7A—H7A | 0.9500 | C7B—H7B | 0.9500 |
C7A—C8A | 1.391 (3) | C7B—C8B | 1.391 (3) |
C8A—H8A | 0.9500 | C8B—H8B | 0.9500 |
Br6A···Br6Bi | 3.4966 (4) | H5B···O2Avii | 2.63 |
Br6A···C1Aii | 3.554 (3) | O2A···H4A | 2.50 |
C2A···Br6Aii | 3.515 (3) | O2B···H1Av | 2.18 |
Br6B···C2Biii | 3.504 (2) | O2B···H4B | 2.52 |
Br6A···H1Aii | 3.03 | O2B···H8Av | 2.47 |
Cl1A···O2A | 2.894 (2) | C6A···C8Aii | 3.361 (3) |
Cl1B···O2B | 2.901 (2) | C1A···H8A | 2.61 |
Cl2B···C8B | 3.453 (3) | C1B···H8B | 2.62 |
Cl2B···C4A | 3.251 (3) | C8A···H1A | 2.63 |
Cl2B···H8B | 2.88 | C8B···H1B | 2.67 |
O2A···C1Biv | 3.166 (3) | H1A···H8A | 2.06 |
O2B···C1Av | 3.100 (3) | H1B···H8B | 2.20 |
H1B···O2Avi | 2.18 | ||
Cl1A—C1A—Cl2A | 110.59 (13) | Cl1B—C1B—Cl2B | 110.50 (13) |
Cl1A—C1A—H1A | 109.1 | Cl1B—C1B—H1B | 109.2 |
Cl2A—C1A—H1A | 109.1 | Cl2B—C1B—H1B | 109.2 |
C2A—C1A—Cl1A | 111.28 (16) | C2B—C1B—Cl1B | 111.22 (16) |
C2A—C1A—Cl2A | 107.49 (17) | C2B—C1B—Cl2B | 107.41 (16) |
C2A—C1A—H1A | 109.1 | C2B—C1B—H1B | 109.2 |
O2A—C2A—C1A | 119.8 (2) | O2B—C2B—C1B | 119.7 (2) |
O2A—C2A—C3A | 122.4 (2) | O2B—C2B—C3B | 122.9 (2) |
C3A—C2A—C1A | 117.9 (2) | C3B—C2B—C1B | 117.4 (2) |
C4A—C3A—C2A | 118.0 (2) | C4B—C3B—C2B | 117.6 (2) |
C8A—C3A—C2A | 122.5 (2) | C8B—C3B—C2B | 122.5 (2) |
C8A—C3A—C4A | 119.5 (2) | C8B—C3B—C4B | 119.9 (2) |
C3A—C4A—H4A | 119.6 | C3B—C4B—H4B | 119.7 |
C5A—C4A—C3A | 120.8 (2) | C5B—C4B—C3B | 120.6 (2) |
C5A—C4A—H4A | 119.6 | C5B—C4B—H4B | 119.7 |
C4A—C5A—H5A | 120.7 | C4B—C5B—H5B | 120.8 |
C4A—C5A—C6A | 118.7 (2) | C4B—C5B—C6B | 118.4 (2) |
C6A—C5A—H5A | 120.7 | C6B—C5B—H5B | 120.8 |
C5A—C6A—Br6A | 119.57 (18) | C5B—C6B—Br6B | 119.59 (18) |
C7A—C6A—Br6A | 118.54 (18) | C7B—C6B—Br6B | 118.29 (18) |
C7A—C6A—C5A | 121.9 (2) | C7B—C6B—C5B | 122.1 (2) |
C6A—C7A—H7A | 120.4 | C6B—C7B—H7B | 120.6 |
C6A—C7A—C8A | 119.1 (2) | C6B—C7B—C8B | 118.9 (2) |
C8A—C7A—H7A | 120.4 | C8B—C7B—H7B | 120.6 |
C3A—C8A—H8A | 120.0 | C3B—C8B—H8B | 119.9 |
C7A—C8A—C3A | 120.0 (2) | C7B—C8B—C3B | 120.1 (2) |
C7A—C8A—H8A | 120.0 | C7B—C8B—H8B | 119.9 |
Br6A—C6A—C7A—C8A | −179.28 (17) | Br6B—C6B—C7B—C8B | −179.14 (19) |
Cl1A—C1A—C2A—O2A | 23.6 (3) | Cl1B—C1B—C2B—O2B | 25.4 (3) |
Cl1A—C1A—C2A—C3A | −157.33 (17) | Cl1B—C1B—C2B—C3B | −154.12 (17) |
Cl2A—C1A—C2A—O2A | −97.6 (2) | Cl2B—C1B—C2B—O2B | −95.6 (2) |
Cl2A—C1A—C2A—C3A | 81.4 (2) | Cl2B—C1B—C2B—C3B | 84.8 (2) |
O2A—C2A—C3A—C4A | 0.1 (4) | O2B—C2B—C3B—C4B | −14.4 (3) |
O2A—C2A—C3A—C8A | −178.4 (2) | O2B—C2B—C3B—C8B | 167.0 (2) |
C1A—C2A—C3A—C4A | −178.9 (2) | C1B—C2B—C3B—C4B | 165.1 (2) |
C1A—C2A—C3A—C8A | 2.6 (3) | C1B—C2B—C3B—C8B | −13.5 (3) |
C2A—C3A—C4A—C5A | −178.6 (2) | C2B—C3B—C4B—C5B | −178.0 (2) |
C2A—C3A—C8A—C7A | 179.0 (2) | C2B—C3B—C8B—C7B | 179.1 (2) |
C3A—C4A—C5A—C6A | −0.6 (4) | C3B—C4B—C5B—C6B | −1.2 (4) |
C4A—C3A—C8A—C7A | 0.6 (3) | C4B—C3B—C8B—C7B | 0.5 (4) |
C4A—C5A—C6A—Br6A | 179.75 (18) | C4B—C5B—C6B—Br6B | −179.69 (18) |
C4A—C5A—C6A—C7A | 0.8 (4) | C4B—C5B—C6B—C7B | 0.5 (4) |
C5A—C6A—C7A—C8A | −0.3 (3) | C5B—C6B—C7B—C8B | 0.6 (4) |
C6A—C7A—C8A—C3A | −0.4 (3) | C6B—C7B—C8B—C3B | −1.2 (4) |
C8A—C3A—C4A—C5A | −0.1 (4) | C8B—C3B—C4B—C5B | 0.7 (4) |
Symmetry codes: (i) x, y, z−1; (ii) −x+1, −y+1, −z+1; (iii) −x+2, −y+2, −z+2; (iv) x−1, y, z; (v) x, y+1, z; (vi) x+1, y, z; (vii) −x+1, −y+2, −z+2. |
D—H···A | D—H | H···A | D···A | D—H···A |
C1A—H1A···O2Bviii | 1.00 | 2.18 | 3.100 (3) | 152 |
C1B—H1B···O2Avi | 1.00 | 2.18 | 3.166 (3) | 169 |
C8A—H8A···O2Bviii | 0.95 | 2.47 | 3.374 (3) | 160 |
Symmetry codes: (vi) x+1, y, z; (viii) x, y−1, z. |
C9H8Br2O | F(000) = 560 |
Mr = 291.97 | Dx = 2.047 Mg m−3 |
Monoclinic, P21/c | Cu Kα radiation, λ = 1.54184 Å |
a = 6.6243 (1) Å | Cell parameters from 8712 reflections |
b = 9.9574 (1) Å | θ = 4.4–80.2° |
c = 14.3804 (2) Å | µ = 10.43 mm−1 |
β = 92.520 (1)° | T = 100 K |
V = 947.63 (2) Å3 | Prism, colorless |
Z = 4 | 0.22 × 0.16 × 0.12 mm |
XtaLAB Synergy, Dualflex, HyPix diffractometer | 2075 independent reflections |
Radiation source: micro-focus sealed X-ray tube, PhotonJet (Cu) X-ray Source | 2046 reflections with I > 2σ(I) |
Mirror monochromator | Rint = 0.031 |
Detector resolution: 10.0000 pixels mm-1 | θmax = 80.6°, θmin = 5.4° |
ω scans | h = −8→6 |
Absorption correction: gaussian (CrysAlisPr; Rigaku OD, 2024) | k = −12→12 |
Tmin = 0.198, Tmax = 0.680 | l = −18→18 |
12954 measured reflections |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.027 | H-atom parameters constrained |
wR(F2) = 0.071 | w = 1/[σ2(Fo2) + (0.0353P)2 + 1.8407P] where P = (Fo2 + 2Fc2)/3 |
S = 1.08 | (Δ/σ)max = 0.001 |
2075 reflections | Δρmax = 0.61 e Å−3 |
111 parameters | Δρmin = −0.51 e Å−3 |
0 restraints | Extinction correction: SHELXL2018/3 (Sheldrick, 2015b), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: dual | Extinction coefficient: 0.00143 (13) |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
x | y | z | Uiso*/Ueq | ||
Br1 | 1.23695 (4) | 0.66709 (3) | 0.63489 (2) | 0.01960 (11) | |
Br2 | 0.77764 (4) | 0.64644 (3) | 0.55958 (2) | 0.02528 (12) | |
O2 | 0.9676 (3) | 0.8317 (2) | 0.75385 (16) | 0.0251 (4) | |
C1 | 0.9651 (4) | 0.6269 (3) | 0.66762 (18) | 0.0169 (5) | |
H1 | 0.959154 | 0.532581 | 0.691175 | 0.020* | |
C2 | 0.8893 (4) | 0.7229 (3) | 0.74202 (18) | 0.0163 (5) | |
C3 | 0.7113 (4) | 0.6791 (3) | 0.79372 (19) | 0.0181 (5) | |
C4 | 0.5987 (4) | 0.7784 (3) | 0.83659 (18) | 0.0186 (5) | |
H4 | 0.639502 | 0.869684 | 0.833713 | 0.022* | |
C5 | 0.4273 (4) | 0.7438 (3) | 0.88335 (18) | 0.0195 (5) | |
H5 | 0.350118 | 0.812055 | 0.911211 | 0.023* | |
C6 | 0.3669 (4) | 0.6097 (3) | 0.88997 (18) | 0.0185 (5) | |
C7 | 0.4849 (4) | 0.5111 (3) | 0.84988 (19) | 0.0195 (5) | |
H7 | 0.449098 | 0.419262 | 0.856196 | 0.023* | |
C8 | 0.6538 (4) | 0.5447 (3) | 0.80095 (18) | 0.0186 (5) | |
H8 | 0.730070 | 0.476472 | 0.772465 | 0.022* | |
C9 | 0.1787 (4) | 0.5707 (3) | 0.9386 (2) | 0.0236 (6) | |
H9A | 0.216416 | 0.531296 | 0.999369 | 0.035* | |
H9B | 0.102049 | 0.504843 | 0.900725 | 0.035* | |
H9C | 0.095251 | 0.650586 | 0.947391 | 0.035* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Br1 | 0.01651 (16) | 0.02134 (17) | 0.02127 (17) | −0.00045 (9) | 0.00428 (10) | 0.00094 (10) |
Br2 | 0.02045 (17) | 0.03458 (19) | 0.02068 (17) | −0.00176 (11) | −0.00073 (11) | −0.00414 (11) |
O2 | 0.0244 (10) | 0.0201 (10) | 0.0314 (11) | −0.0065 (8) | 0.0095 (8) | −0.0060 (8) |
C1 | 0.0136 (11) | 0.0193 (12) | 0.0179 (12) | −0.0003 (9) | 0.0025 (9) | 0.0003 (10) |
C2 | 0.0161 (11) | 0.0152 (12) | 0.0176 (11) | −0.0002 (9) | 0.0015 (9) | 0.0014 (9) |
C3 | 0.0164 (12) | 0.0177 (12) | 0.0203 (12) | −0.0002 (10) | 0.0010 (10) | 0.0007 (10) |
C4 | 0.0190 (12) | 0.0169 (12) | 0.0198 (12) | −0.0005 (9) | −0.0001 (9) | 0.0001 (10) |
C5 | 0.0201 (12) | 0.0218 (13) | 0.0167 (11) | 0.0045 (10) | 0.0022 (9) | −0.0031 (10) |
C6 | 0.0176 (12) | 0.0248 (13) | 0.0132 (11) | −0.0005 (10) | 0.0013 (9) | −0.0001 (10) |
C7 | 0.0182 (12) | 0.0193 (12) | 0.0210 (12) | −0.0011 (10) | 0.0007 (10) | 0.0008 (10) |
C8 | 0.0187 (12) | 0.0177 (13) | 0.0196 (12) | 0.0005 (9) | 0.0030 (9) | 0.0008 (10) |
C9 | 0.0199 (12) | 0.0287 (15) | 0.0228 (13) | −0.0025 (11) | 0.0053 (10) | −0.0001 (11) |
Br1—C1 | 1.923 (3) | C5—H5 | 0.9500 |
Br2—C1 | 1.955 (3) | C5—C6 | 1.398 (4) |
O2—C2 | 1.210 (3) | C6—C7 | 1.396 (4) |
C1—H1 | 1.0000 | C6—C9 | 1.507 (4) |
C1—C2 | 1.535 (4) | C7—H7 | 0.9500 |
C2—C3 | 1.487 (4) | C7—C8 | 1.389 (4) |
C3—C4 | 1.398 (4) | C8—H8 | 0.9500 |
C3—C8 | 1.396 (4) | C9—H9A | 0.9800 |
C4—H4 | 0.9500 | C9—H9B | 0.9800 |
C4—C5 | 1.388 (4) | C9—H9C | 0.9800 |
Br1···O2 | 3.011 (2) | H8···O2ii | 2.51 |
C4···Br2i | 3.452 (3) | C1···H8 | 2.67 |
C5···Br2i | 3.534 (3) | C8···H1 | 2.62 |
C1···O2ii | 3.173 (4) | H1···H8 | 2.03 |
O2···H4 | 2.53 | H5···H9C | 2.40 |
H1···O2ii | 2.20 | ||
Br1—C1—Br2 | 110.71 (13) | C6—C5—H5 | 119.6 |
Br1—C1—H1 | 109.2 | C5—C6—C9 | 121.5 (2) |
Br2—C1—H1 | 109.2 | C7—C6—C5 | 118.4 (2) |
C2—C1—Br1 | 112.31 (18) | C7—C6—C9 | 120.0 (3) |
C2—C1—Br2 | 106.03 (17) | C6—C7—H7 | 119.4 |
C2—C1—H1 | 109.2 | C8—C7—C6 | 121.2 (3) |
O2—C2—C1 | 120.3 (2) | C8—C7—H7 | 119.4 |
O2—C2—C3 | 122.5 (2) | C3—C8—H8 | 120.1 |
C3—C2—C1 | 117.2 (2) | C7—C8—C3 | 119.8 (3) |
C4—C3—C2 | 117.6 (2) | C7—C8—H8 | 120.1 |
C8—C3—C2 | 122.9 (2) | C6—C9—H9A | 109.5 |
C8—C3—C4 | 119.5 (2) | C6—C9—H9B | 109.5 |
C3—C4—H4 | 119.9 | C6—C9—H9C | 109.5 |
C5—C4—C3 | 120.1 (3) | H9A—C9—H9B | 109.5 |
C5—C4—H4 | 119.9 | H9A—C9—H9C | 109.5 |
C4—C5—H5 | 119.6 | H9B—C9—H9C | 109.5 |
C4—C5—C6 | 120.9 (2) | ||
Br1—C1—C2—O2 | 21.6 (3) | C2—C3—C8—C7 | −179.6 (2) |
Br1—C1—C2—C3 | −161.77 (18) | C3—C4—C5—C6 | 1.3 (4) |
Br2—C1—C2—O2 | −99.5 (3) | C4—C3—C8—C7 | 0.5 (4) |
Br2—C1—C2—C3 | 77.2 (2) | C4—C5—C6—C7 | 1.1 (4) |
O2—C2—C3—C4 | 18.2 (4) | C4—C5—C6—C9 | −178.6 (2) |
O2—C2—C3—C8 | −161.7 (3) | C5—C6—C7—C8 | −2.8 (4) |
C1—C2—C3—C4 | −158.4 (2) | C6—C7—C8—C3 | 2.0 (4) |
C1—C2—C3—C8 | 21.7 (4) | C8—C3—C4—C5 | −2.1 (4) |
C2—C3—C4—C5 | 178.0 (2) | C9—C6—C7—C8 | 177.0 (2) |
Symmetry codes: (i) x, −y+3/2, z+1/2; (ii) −x+2, y−1/2, −z+3/2. |
D—H···A | D—H | H···A | D···A | D—H···A |
C1—H1···O2ii | 1.00 | 2.20 | 3.173 (4) | 165 |
C8—H8···O2ii | 0.95 | 2.51 | 3.403 (3) | 157 |
Symmetry code: (ii) −x+2, y−1/2, −z+3/2. |
Acknowledgements
Crystal
was performed in the Department of Structural Studies of Zelinsky Institute of Organic Chemistry, Moscow. This work has been supported by the Baku State University, Azerbaijan Medical University and Khazar University in Azerbaijan. The author's contributions are as follows. Conceptualization, AVG, TH and ANB; synthesis, AVG and FIG; X-ray analysis, AIS; writing (review and editing of the manuscript) AVG and TH; funding acquisition, AVG, KIH and TAJ; supervision, AVG, TH and ANB.References
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