research communications
Synthesis and of a new isomer of poly[di-μ3-cyanido-μ-2,6-dimethylpyrazine-dicopper(I)]
aInstitut für Anorganische Chemie, Universität Kiel, Max-Eyth.-Str. 2, 24118 Kiel, Germany
*Correspondence e-mail: [email protected]
The title compound, [Cu2(CN)2(C6H8N2)]n or Cu2(CN)2(2,6-dimethylpyrazine), was prepared by the reaction of copper(I) cyanide with 2,6-dimethylpyrazine in water. Its asymmetric unit consists of two crystallographically independent copper(I) cations and cyanide anions as well as one crystallographically independent 2,6-dimethylpyrazine ligand in general positions. Each copper cation is fourfold coordinated by one N atom of the 2,6-dimethylpyrazine ligand and three cyanide anions, that are disordered so that each C and N position has mixed occupancy with a ratio between N and C of 94:6 and 77:23. The copper cations are linked by the cyanide atoms into layers that are further connected into a 3D network by the 2,6-dimethylpyrazine ligands. Powder X-ray diffraction (PXRD) proves that a pure crystalline phase has been obtained. It is noted that this crystal structure represents a new isomer of Cu2(CN)2(2,6-dimethylpyrazine), which has already been reported in the literature [Chesnut et al. (2001
). J. Chem. Soc. Dalton Trans. pp. 2567–2580].
Keywords: synthesis; crystal structure; copper(I) cyanide; 2,6-dimethylpyrazine; coordination polymer.
CCDC reference: 2472913
1. Chemical context
Coordination compounds based on copper(I) halides and pseudohalides show a pronounced structural variability and therefore, have been investigated for many decades (Kromp & Sheldrick, 1999
; Peng et al., 2010
; Näther et al., 2002
, 2017
; Li et al., 2005
). Such compounds usually consist of CuX subunits (X = Cl, Br, I, CN, SCN) that are linked into mono- or di-periodic coordination networks that can further be expanded when bridging coligands are used. In most cases, such compounds are prepared in solution but we have found that new compounds with more condensed CuX networks can also be prepared by thermal decomposition of suitable precursor compounds (Näther et al., 2001
; Näther & Jess, 2004
).
In the course of our systematic work, we became interested in compounds with 2,6-dimethylpyrazine that can act as a bridging ligand, but also as a terminal ligand because the second N atom is sterically shielded by the two neighbouring methyl groups. Compounds with copper(I) halides and 2,6-dimethylpyrazine have been already reported. These include Cu2Cl2(2,6-dimethylpyrazine (Refcode YEFPOR; Fan et al., 2015
), as well as CuI(2,6-dimethylpyrazine) [Refcodes TONQOE (Kitada & Ishida, 2014
) and TONQOE01 (Zhang et al., 2014
)]. Moreover, one pseudo halide compound with the composition Cu2(CN)2(2,6-dimethylpyrazine) is also reported (Refcode SUYGAU; Chesnut et al., 2001
). In the CuI compound, the ratio between the cation and the anionic ligand is 1:1, whereas in the CuCl and CuCN compounds it is 2:1. Therefore, it can be assumed that for the latter two compounds with chloride and cyanide, a further 2,6-dimethylpyrazine-rich phase might exist that can be transformed into the better known 2,6-dimethylpyrazine-deficient phases. Such compounds would be of interest for their thermal reactivity. In the beginning, we focused on compounds with CuCN, which was reacted in different ratios with 2,6-dimethylpyrazine. In one of these batches, we obtained crystals that were characterized by single-crystal X-ray diffraction, which proved that a new isomer of Cu2(CN)2(2,6-dimethylpyrazine) had accidentally formed. Later we have found that this compound can be prepared pure if CuCN and 2,6-dimethylpyrazine are reacted in a 2:1 ratio at room-temperature.
2. Structural commentary
The of the title compound, Cu2(CN)2(2,6-dimethylpyrazine), consists of two crystallographically independent copper cations, two independent cyanide anions and one independent 2,6-dimethylpyrazine ligands, all of them located in general positions (Fig. 1
). The cyanide anions are partly disordered so that the C and the N atoms occupy the same crystallographic position. Each copper cation is fourfold coordinated by three cyanide anions and one 2,6-dimethylpyrazine ligand, but for Cu1 one relatively long Cu—C distance to a symmetry-related cyanide anion is observed, which is at the limit of that expected for a typical coordinative bond (Table 1
). From the bond angles, it is obvious that a distorted tetrahedral coordination is present, as expected for copper(I) cations (Table 1
). Each of the two copper cations is linked by two cyanide anions into four-membered rings built up of Cu2(CN)2 units that are linked by the anionic ligands to neighboring Cu2(CN)2 units (Fig. 2
). The Cu⋯Cu distances within these rings are 3.0003 (7) and 2.4031 (7) Å (Table 1
). Four such units form twelve-membered rings that condense into layers that are parallel to the (010) plane (Fig. 2
). Neighboring layers are connected by bridging 2,6-dimethylpyrazine ligands, which are oriented along the crystallographic b-axis direction, forming a three-dimensional coordination network (Fig. 3
).
|
| Figure 1 Crystal structure of the title compound with labeling and displacement ellipsoids drawn at the 50% probability level. Symmetry codes for the generation of equivalent atoms: (i) −x + 1, −y + 1, −z + 1; (iii) −x + 1, y + |
| Figure 2 View of the CuCN network in the title compound in a view along the crystallographic b-axis direction. |
| Figure 3 Crystal structure of the title compound in a view along the crystallographic a-axis direction. |
The of the title compound is different from that of the isomer of Cu2(CN)2(2,6-dimethylpyrazine) that has already been reported in the literature (Chesnut et al., 2001
). The asymmetric unit of this compound also consists of two crystallographically independent copper cations, but one of them is only threefold coordinated, whereas the second cation is fourfold coordinated. The CuCN network of this compound also consists of Cu2(CN)2 units that are linked into twelve-membered rings, but these rings do not condense into layers and instead CuCN double chains are formed. Nevertheless, because of the bridging 2,6-dimethylpyrazine ligands, a 3D network is also formed. Finally, it is noted that this isomer was prepared under hydrothermal conditions at 453 K, which indicates that the title compound is thermodynamically stable at least at room-temperature.
3. Supramolecular features
The of the title compound is exclusively dominated by coordinative bonds. There are no other directional interactions such as, for example, hydrogen bonding.
4. Database survey
As mentioned in the introduction, some compounds with CuI halides or pseudo halides and 2,6-dimethylpyrazine as ligand are already reported in the CCDC database [Groom et al. (2016
); CSD Version 5.43, January 2025; search with CONQUEST (Bruno et al., 2002
)]. These include the second isomer of Cu2(CN)2(2,6-dimethylpyrazine) (Fig. 4
) described in detail in the Structural commentary (Refcode SUYGAU; Chesnut et al., 2001
) as well as Cu2Cl2(2,6-dimethylpyrazine (Refcode YEFPOR, Fan et al., 2015
), in which the copper cations are tetrahedrally coordinated by three μ-1,1 bridging chloride anions and one 2,6-dimethylpyrazine ligand. The copper cations are linked by the chloride anions into double chains that are connected into layers by the 2,6-dimethylpyrazine ligands. Finally, there is one compound with the composition CuI(2,6-dimethylpyrazine) [Refcodes TONQOE (Kitada & Ishida, 2014
) and TONQOE01 (Zhang et al., 2014
)], which shows the same topology of the CuI network as that of the chloride compounds, but in this structure the 2,6-dimethylpyrazine ligand is only terminally bonded, which means that a chain structure is formed.
| | Figure 4 View of the CuCN network in the known isomer of Cu2(CN)2(2,6-dimethylpyrazine) (Chesnut et al., 2001 |
5. Synthesis and crystallization
Synthesis
Copper(I)cyanide (99%) and 2,6-dimethylpyrazine (98%) were purchased from Sigma-Aldrich.
179.1 mg (2 mmol) of CuCN and 108.1 mg (1 mmol) of 2,6-dimethylpyrazine were stirred in 1 mL of water for 3 d, leading to the formation of a light-yellow-colored microcrystalline precipitate that was filtered off and dried in air. Comparison of the experimental X-ray powder pattern with that calculated from single-crystal data prove that a pure crystalline phase has been obtained (Fig. 5
).
| Figure 5 Experimental (top) and calculated X-ray powder pattern (bottom) of the title compound. |
Crystals suitable for single crystal X-ray diffraction were prepared using the same amount of reactants but without stirring.
Experimental details
The PXRD measurements were performed with Cu Kα1 radiation (λ = 1.540598 Å) using a Stoe Transmission Powder Diffraction System (STADI P) equipped with a MYTHEN 1K detector and a Johansson-type Ge(111) monochromator.
6. Refinement
Crystal data, data collection and structure details are summarized in Table 2
. The C-bound hydrogen atoms were positioned with idealized geometry (methyl H atoms allowed to rotate but not to tip) and were refined isotropically with Uiso(H) = 1.2Ueq(C) (1.5 for methyl H atoms).
|
The cyanide anions are partly disordered so that the C and N atoms occupy the same crystallographic position. They were therefore refined using EXYZ and EADP leading to a ratio between N3 and C7 and N3′ and C7′ of 94:6 and between N4 and C8 and N4′ and C8′ of 77:23.
Supporting information
CCDC reference: 2472913
contains datablock I. DOI: https://doi.org/10.1107/S2056989025006267/oo2012sup1.cif
Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S2056989025006267/oo2012Isup2.hkl
| [Cu2(CN)2(C6H8N2)] | F(000) = 568 |
| Mr = 287.26 | Dx = 2.081 Mg m−3 |
| Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
| a = 7.0957 (8) Å | Cell parameters from 63 reflections |
| b = 15.8976 (13) Å | θ = 12.5–15.5° |
| c = 8.1376 (9) Å | µ = 4.60 mm−1 |
| β = 92.882 (10)° | T = 293 K |
| V = 916.80 (16) Å3 | Block, ligh yellow |
| Z = 4 | 0.2 × 0.05 × 0.05 mm |
| Stoe STADI 4 diffractometer | Rint = 0.027 |
| Graphite monochromator | θmax = 29.0°, θmin = 2.8° |
| ω–θ–scans | h = 0→9 |
| Absorption correction: ψ scan (REDU4; Stoe & Cie, 1987) | k = −21→21 |
| Tmin = 0.492, Tmax = 0.558 | l = −11→11 |
| 5136 measured reflections | 4 standard reflections every 2 h min |
| 2436 independent reflections | intensity decay: none |
| 1787 reflections with I > 2σ(I) |
| Refinement on F2 | 0 restraints |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| R[F2 > 2σ(F2)] = 0.026 | H-atom parameters constrained |
| wR(F2) = 0.060 | w = 1/[σ2(Fo2) + (0.0257P)2 + 0.2688P] where P = (Fo2 + 2Fc2)/3 |
| S = 1.01 | (Δ/σ)max = 0.001 |
| 2436 reflections | Δρmax = 0.49 e Å−3 |
| 129 parameters | Δρmin = −0.43 e Å−3 |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| x | y | z | Uiso*/Ueq | Occ. (<1) | |
| Cu1 | 0.55661 (4) | 0.41543 (2) | 0.56771 (4) | 0.03144 (9) | |
| Cu2 | 0.87716 (4) | 0.52784 (2) | 0.08063 (4) | 0.02735 (8) | |
| N1 | 0.4099 (3) | 0.30232 (12) | 0.5414 (2) | 0.0225 (4) | |
| C1 | 0.5003 (3) | 0.22919 (16) | 0.5785 (3) | 0.0251 (5) | |
| C2 | 0.4134 (3) | 0.15206 (15) | 0.5466 (3) | 0.0284 (5) | |
| H2 | 0.478870 | 0.103050 | 0.574757 | 0.034* | |
| N2 | 0.2396 (3) | 0.14575 (13) | 0.4772 (2) | 0.0255 (4) | |
| C3 | 0.1523 (3) | 0.21814 (15) | 0.4399 (3) | 0.0263 (5) | |
| H3 | 0.031165 | 0.216062 | 0.390699 | 0.032* | |
| C4 | 0.2337 (3) | 0.29670 (15) | 0.4709 (3) | 0.0239 (5) | |
| C5 | 0.6974 (4) | 0.23279 (18) | 0.6514 (4) | 0.0372 (6) | |
| H5A | 0.765663 | 0.276403 | 0.598490 | 0.056* | |
| H5B | 0.758464 | 0.179724 | 0.635597 | 0.056* | |
| H5C | 0.694804 | 0.244561 | 0.766950 | 0.056* | |
| C6 | 0.1273 (4) | 0.37507 (16) | 0.4272 (4) | 0.0402 (7) | |
| H6A | 0.071258 | 0.396921 | 0.523285 | 0.060* | |
| H6B | 0.030011 | 0.362659 | 0.344440 | 0.060* | |
| H6C | 0.211985 | 0.416091 | 0.385614 | 0.060* | |
| N3 | 0.7203 (3) | 0.43189 (13) | 0.7707 (2) | 0.0287 (4) | 0.94 |
| C7 | 0.8343 (4) | 0.45479 (15) | 0.8634 (3) | 0.0281 (5) | 0.94 |
| N4 | 0.7333 (3) | 0.48671 (13) | 0.2603 (3) | 0.0292 (5) | 0.77 |
| C8 | 0.6547 (3) | 0.46183 (15) | 0.3708 (3) | 0.0282 (5) | 0.77 |
| N3' | 0.8343 (4) | 0.45479 (15) | 0.8634 (3) | 0.0281 (5) | 0.06 |
| C7' | 0.7203 (3) | 0.43189 (13) | 0.7707 (2) | 0.0287 (4) | 0.06 |
| N4' | 0.6547 (3) | 0.46183 (15) | 0.3708 (3) | 0.0282 (5) | 0.23 |
| C8' | 0.7333 (3) | 0.48671 (13) | 0.2603 (3) | 0.0292 (5) | 0.23 |
| U11 | U22 | U33 | U12 | U13 | U23 | |
| Cu1 | 0.02879 (17) | 0.03563 (18) | 0.02919 (16) | −0.01021 (13) | −0.00544 (12) | 0.00005 (14) |
| Cu2 | 0.02545 (15) | 0.02622 (15) | 0.03001 (15) | 0.00147 (12) | −0.00232 (11) | 0.00123 (13) |
| N1 | 0.0193 (9) | 0.0250 (10) | 0.0228 (9) | −0.0036 (8) | −0.0027 (7) | −0.0003 (8) |
| C1 | 0.0194 (10) | 0.0259 (12) | 0.0295 (12) | −0.0018 (9) | −0.0033 (9) | 0.0016 (9) |
| C2 | 0.0237 (12) | 0.0214 (12) | 0.0392 (14) | −0.0001 (9) | −0.0070 (10) | 0.0030 (10) |
| N2 | 0.0222 (9) | 0.0220 (10) | 0.0317 (10) | −0.0041 (8) | −0.0046 (8) | −0.0008 (8) |
| C3 | 0.0208 (11) | 0.0233 (12) | 0.0339 (12) | −0.0022 (9) | −0.0070 (9) | −0.0017 (9) |
| C4 | 0.0195 (10) | 0.0228 (11) | 0.0287 (11) | −0.0012 (9) | −0.0047 (9) | 0.0011 (9) |
| C5 | 0.0263 (13) | 0.0330 (14) | 0.0507 (16) | −0.0012 (11) | −0.0140 (12) | −0.0005 (13) |
| C6 | 0.0336 (13) | 0.0203 (12) | 0.0644 (19) | 0.0008 (10) | −0.0209 (13) | 0.0005 (12) |
| N3 | 0.0275 (10) | 0.0289 (11) | 0.0288 (10) | −0.0027 (9) | −0.0058 (8) | −0.0011 (9) |
| C7 | 0.0290 (12) | 0.0227 (12) | 0.0315 (12) | −0.0030 (9) | −0.0093 (10) | 0.0046 (9) |
| N4 | 0.0275 (11) | 0.0264 (11) | 0.0335 (11) | −0.0011 (9) | −0.0012 (9) | −0.0001 (9) |
| C8 | 0.0260 (11) | 0.0288 (12) | 0.0293 (11) | −0.0005 (9) | −0.0036 (9) | −0.0029 (10) |
| N3' | 0.0290 (12) | 0.0227 (12) | 0.0315 (12) | −0.0030 (9) | −0.0093 (10) | 0.0046 (9) |
| C7' | 0.0275 (10) | 0.0289 (11) | 0.0288 (10) | −0.0027 (9) | −0.0058 (8) | −0.0011 (9) |
| N4' | 0.0260 (11) | 0.0288 (12) | 0.0293 (11) | −0.0005 (9) | −0.0036 (9) | −0.0029 (10) |
| C8' | 0.0275 (11) | 0.0264 (11) | 0.0335 (11) | −0.0011 (9) | −0.0012 (9) | −0.0001 (9) |
| Cu1—Cu1i | 3.0003 (7) | C2—H2 | 0.9300 |
| Cu1—N1 | 2.0836 (19) | C2—N2 | 1.334 (3) |
| Cu1—N3 | 1.989 (2) | N2—C3 | 1.335 (3) |
| Cu1—C8 | 1.926 (2) | C3—H3 | 0.9300 |
| Cu1—C8i | 2.526 (2) | C3—C4 | 1.394 (3) |
| Cu1—C7' | 1.989 (2) | C4—C6 | 1.491 (3) |
| Cu1—N4' | 1.926 (2) | C5—H5A | 0.9600 |
| Cu2—Cu2ii | 2.4031 (7) | C5—H5B | 0.9600 |
| Cu2—N2iii | 2.093 (2) | C5—H5C | 0.9600 |
| Cu2—C7iv | 2.093 (2) | C6—H6A | 0.9600 |
| Cu2—C7v | 2.125 (2) | C6—H6B | 0.9600 |
| Cu2—N4 | 1.938 (2) | C6—H6C | 0.9600 |
| Cu2—C8' | 1.938 (2) | N3—C7 | 1.137 (3) |
| N1—C1 | 1.355 (3) | N4—C8 | 1.152 (3) |
| N1—C4 | 1.352 (3) | N3'—C7' | 1.137 (3) |
| C1—C2 | 1.391 (3) | N4'—C8' | 1.152 (3) |
| C1—C5 | 1.492 (3) | ||
| N1—Cu1—Cu1i | 127.77 (5) | C2—N2—Cu2vi | 120.62 (17) |
| N1—Cu1—C8i | 112.87 (8) | C2—N2—C3 | 116.1 (2) |
| N3—Cu1—Cu1i | 108.76 (6) | C3—N2—Cu2vi | 123.17 (15) |
| N3—Cu1—N1 | 117.84 (8) | N2—C3—H3 | 118.4 |
| N3—Cu1—C8i | 93.53 (8) | N2—C3—C4 | 123.2 (2) |
| C8i—Cu1—Cu1i | 39.63 (6) | C4—C3—H3 | 118.4 |
| C8—Cu1—Cu1i | 56.79 (7) | N1—C4—C3 | 120.1 (2) |
| C8—Cu1—N1 | 116.40 (9) | N1—C4—C6 | 119.5 (2) |
| C8—Cu1—N3 | 114.87 (9) | C3—C4—C6 | 120.4 (2) |
| C8—Cu1—C8i | 96.42 (9) | C1—C5—H5A | 109.5 |
| C7'—Cu1—N1 | 117.84 (8) | C1—C5—H5B | 109.5 |
| C7'—Cu1—C8i | 93.53 (8) | C1—C5—H5C | 109.5 |
| N4'—Cu1—N1 | 116.40 (9) | H5A—C5—H5B | 109.5 |
| N4'—Cu1—C8i | 96.42 (9) | H5A—C5—H5C | 109.5 |
| N4'—Cu1—C7' | 114.87 (9) | H5B—C5—H5C | 109.5 |
| N2iii—Cu2—Cu2ii | 119.79 (6) | C4—C6—H6A | 109.5 |
| N2iii—Cu2—C7iv | 107.60 (8) | C4—C6—H6B | 109.5 |
| N2iii—Cu2—C7v | 105.31 (8) | C4—C6—H6C | 109.5 |
| C7iv—Cu2—Cu2ii | 55.88 (7) | H6A—C6—H6B | 109.5 |
| C7v—Cu2—Cu2ii | 54.66 (7) | H6A—C6—H6C | 109.5 |
| C7iv—Cu2—C7v | 110.54 (7) | H6B—C6—H6C | 109.5 |
| N4—Cu2—Cu2ii | 135.36 (7) | C7—N3—Cu1 | 163.5 (2) |
| N4—Cu2—N2iii | 104.73 (9) | Cu2iv—C7—Cu2vii | 69.46 (7) |
| N4—Cu2—C7v | 112.62 (9) | N3—C7—Cu2vii | 142.6 (2) |
| N4—Cu2—C7iv | 115.25 (9) | N3—C7—Cu2iv | 147.3 (2) |
| C1—N1—Cu1 | 119.28 (15) | C8—N4—Cu2 | 177.2 (2) |
| C4—N1—Cu1 | 123.18 (16) | Cu1—C8—Cu1i | 83.58 (9) |
| C4—N1—C1 | 117.1 (2) | N4—C8—Cu1 | 172.1 (2) |
| N1—C1—C2 | 120.9 (2) | N4—C8—Cu1i | 101.84 (19) |
| N1—C1—C5 | 118.7 (2) | Cu2iv—N3'—Cu2vii | 69.46 (7) |
| C2—C1—C5 | 120.4 (2) | N3'—C7'—Cu1 | 163.5 (2) |
| C1—C2—H2 | 118.8 | C8'—N4'—Cu1 | 172.1 (2) |
| N2—C2—C1 | 122.5 (2) | N4'—C8'—Cu2 | 177.2 (2) |
| N2—C2—H2 | 118.8 | ||
| Cu1—N1—C1—C2 | −173.34 (18) | C1—N1—C4—C3 | 0.2 (3) |
| Cu1—N1—C1—C5 | 5.4 (3) | C1—N1—C4—C6 | −179.9 (2) |
| Cu1—N1—C4—C3 | 172.50 (18) | C1—C2—N2—Cu2vi | 176.26 (19) |
| Cu1—N1—C4—C6 | −7.6 (3) | C1—C2—N2—C3 | −0.2 (4) |
| Cu1—N3—C7—Cu2vii | 108.7 (7) | C2—N2—C3—C4 | −0.4 (4) |
| Cu1—N3—C7—Cu2iv | −56.4 (10) | N2—C3—C4—N1 | 0.4 (4) |
| Cu2vi—N2—C3—C4 | −176.70 (19) | N2—C3—C4—C6 | −179.5 (3) |
| Cu2vii—N3'—C7'—Cu1 | 108.7 (7) | C4—N1—C1—C2 | −0.7 (3) |
| Cu2iv—N3'—C7'—Cu1 | −56.4 (10) | C4—N1—C1—C5 | 178.0 (2) |
| N1—C1—C2—N2 | 0.7 (4) | C5—C1—C2—N2 | −178.0 (2) |
| Symmetry codes: (i) −x+1, −y+1, −z+1; (ii) −x+2, −y+1, −z; (iii) −x+1, y+1/2, −z+1/2; (iv) −x+2, −y+1, −z+1; (v) x, y, z−1; (vi) −x+1, y−1/2, −z+1/2; (vii) x, y, z+1. |
Acknowledgements
Financial support by the State of Schleswig-Holstein is gratefully acknowledged.
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