research communications
accessSynthesis and structure of diaquabis(nicotinamide-κO)bis(nitrato-κ2O,O′)calcium(II)
aKarakalpak State University named after Berdakh, Republic of Karakalpakstan, Abdirova Street 1, Nukus 742012, Karakalpakstan, bNational University of Uzbekistan named after Mirzo Ulugbek, University Street, 4, Tashkent 100174, Uzbekistan, cInstitute of Bioorganic Chemistry, Academy of Sciences of Uzbekistan, 100125, M., Ulugbek Str 83, Tashkent, Uzbekistan, and dKarakalpakstan Medical Institute, 106 A. Dosnazarov Street, 230105 Nukus City, Uzbekistan
*Correspondence e-mail: [email protected]
The title complex, [Ca(NO3)2(C6H6N2O)2(H2O)2], crystallizes with an eight-coordinate Ca2+ ion in a distorted trigonal–dodecahedral coordination environment. The metal ion is coordinated to two nicotinamide ligands via their carbonyl O atoms, two bidentate nitrate anions and two water molecules. The nicotinamide ligands adopt a nearly trans geometry, while the nitrate anions and aqua ligands are arranged in a pseudo-trans fashion. In the crystal, a three-dimensional supramolecular framework is constructed through N—H⋯O and O—H⋯O hydrogen bonds involving water, nitrate, and nicotinamide functional groups, reinforced by offset π–π stacking interactions between nearly parallel pyridine rings [centroid-to-centroid distance = 3.783 (2) Å]. A Hirshfeld surface analysis revealed that the intermolecular interactions are dominated by O⋯H/H⋯O (42.3%) and H⋯H (26.2%) contacts, corresponding to classical hydrogen bonding and respectively.
Keywords: calcium complex; nicotinamide; hydrogen bonding; crystal structure.
CCDC reference: 2476945
1. Chemical context
Nicotinamide (niacinamide), a water-soluble form of vitamin B3, plays a pivotal role in human metabolism. It serves as a precursor to the essential coenzymes NAD+ and NADP+, which are involved in a wide array of redox reactions. NAD+/NADH participates in over 400 biochemical processes, while NADP+/NADPH is involved in approximately 30 reactions, particularly in cytochrome P450-mediated xenobiotic metabolism (Meyer-Ficca et al., 2016
; Isin et al., 2007
). Beyond its metabolic functions, nicotinamide exhibits versatile coordination behavior due to its ability to donate electron pairs through the pyridine nitrogen atom and the amide oxygen or nitrogen atoms. It typically acts as a monodentate ligand via the pyridine N atom, but bidentate and bridging coordination modes have also been observed (Pricop et al., 2022
; Sun et al., 2018
). Mixed-ligand complexes involving nicotinamide and 1,10-phenanthroline with CoII, NiII, CuII, and ZnII have demonstrated various coordination geometries and potential antimicrobial properties (Drzewiecka et al., 2013
). Similarly, cadmium(II) complexes with nicotinamide, nitrate, and oxalate ligands have shown promising pharmacological activity (Pricop et al., 2025
). In coordination chemistry, the nitrate anion can function as a counter-ion, auxiliary ligand, or redox-active participant. Its inclusion in metal–nicotinamide complexes, such as with calcium(II), may enhance reactivity through NO-release pathways. For instance, recent work by Zhang et al. (2024
) shows intracellular NO release from nitrate-containing metal complexes, indicating their potential as therapeutic NO donors. Calcium is a biologically essential element involved in diverse physiological roles including bone mineralization, muscle contraction, nerve transmission, and blood coagulation. Emerging research has highlighted calcium's regulatory function in intracellular signaling, gene expression, and metabolic control. Calcium(II)–nicotinamide complexes have garnered interest for their structural variety and bioactivity (Braga et al., 2014
; Parsekar et al., 2022
). These include mononuclear species with two nicotinamide and two water ligands and polymeric frameworks where nicotinamide bridges calcium centers (Braga et al., 2011
; Xue et al., 2015
). Mixed-ligand systems incorporating additional donors, such as trinitrophenolates, further demonstrate nicotinamide's coordination flexibility (Parsekar et al., 2022
). In this study, we report the synthesis and crystal structure of the title complex, [Ca(H2O)2(C6H6N2O)2(NO3)2], (I).
2. Structural commentary
The of (I) contains one calcium(II) cation coordinated to eight oxygen atoms: two from O-monodentate nicotinamide ligands, four from two bidentate nitrate anions, and two from aqua ligands (Fig. 1
). The resulting coordination environment forms a distorted CaO8 polyhedron best described as a trigonal dodecahedron (also called snub disphenoid). The Ca—O bond lengths (Table 1
) range from 2.3150 (16) Å for Ca1—O1B to 2.5825 (18) Å for Ca1—O4B. These values are comparable to those reported in a similar Ca2+–nicotinamide complex (Xue et al., 2015
), where O-monodentate coordination via carbonyl oxygen atoms gave a Ca—O distance of 2.2659 (13) Å, and the Ca—O (water) distance was 2.3774 (11) Å. The nicotinamide ligands in (I) are arranged in a nearly trans fashion, with an O1A—Ca1—O1B bond angle of 158.82 (7)°. Similarly, the aqua ligands adopt an approximately trans orientation [O1W—Ca1—O2W = 164.15 (7)°] and the nitrate oxygen pairs (O2A/O2B and O4A/O4B) also exhibit pseudo-trans arrangements with angles of 147.25 (6)° and 151.52 (6)°, respectively. Both nicotinamide ligands (molecules A and B) exhibit the expected near planarity of their aromatic rings, with r.m.s.d. values of 0.003 and 0.002 Å, respectively. The CONH2 groups are slightly twisted relative to the pyridine rings, with dihedral angles of 15.37 (12) and 13.33 (12)° for molecules A and B, respectively. The pyridine ring planes are roughly parallel, forming an interplanar angle of 7.57 (14)°, whereas the carboxamide planes are more tilted relative to one another, with an interplanar angle of 22.24 (17)°. The nitrate anions show a pronounced non-parallel orientation, forming an interplanar angle of 78.4 (1)°.
| ||||||||||||||||||||||
| Figure 1 The molecular structure of (I) showing 50% probability displacement ellipsoids. |
3. Supramolecular features
The supramolecular architecture of (I) is consolidated by a network of hydrogen bonds—including both classical (O—H⋯O, N—H⋯O) and non-classical (C—H⋯O) types—as well as π–π stacking interactions, which collectively reinforce the three-dimensional supramolecular framework. The hydrogen-bonding network involves coordinated water molecules (O1W and O2W), amide –NH2 groups, pyridyl nitrogen atoms (N1A/N1B), coordinated nitrate oxygen atoms (O2A and O2B) and uncoordinated nitrate oxygen atoms (O3A and O3B) (Table 2
and Fig. 2
). Propagation of the network along the [100] direction is mediated by O2W—H2WA⋯O2A and N2B—H2BA⋯N1A bonds, related by an inversion center (symmetry operation: 1 − x, 1 − y, 1 − z), while along [001], O1W—H1WB⋯N1B and N2A—H2AB⋯O3B bonds extend the structure via a screw axis (− + x,
− y, −
+ z). Along [010], O2W—H2WB⋯O3A and a weaker C5B—H5B⋯O3A interaction propagate via inversion/translation symmetry (1 − x, 1 − y, 2 − z). The water molecules serve as pivotal hydrogen-bond donors: O1W links to O3B and N1B, while O2W donates to O2A and O3A. The amide groups contribute significantly, with N2B donating to N1A and O3A and N2A—H2AA⋯O2B, forming an intramolecular contact. The nitrate groups act as hydrogen-bond acceptors: the coordinated oxygen atoms O2A and O2B engage in classical N—H⋯O and O—H⋯O interactions, while the uncoordinated O3A and O3B atoms participate in multiple contacts (six in total), including a notably linear C5A—H5A⋯O3B interaction (174°), further reinforcing the structure via weak C—H⋯O bonding. Graph-set analysis reveals centrosymmetric R22(8) rings from O2W—H⋯O2A interactions; C11(6) chains along [010] (O2W—H2WB⋯O3A), and two distinct chains along [001]: C11(6) from O1W—H1WA⋯O3B and C11(8) from O1W—H1WB⋯N1B. Higher-order ring motifs include R44(12), R66(16), and R86(20), reflecting increasing hydrogen-bonding complexity, with water molecules serving as key structural nodes. In addition to hydrogen bonding, π–π stacking interactions are observed between pyridyl rings of nicotinamide ligands, involving centroids Cg1 (C1A–C5A/N1A) and Cg2 (C1B–C5B/N1B), related by the symmetry operations −1 + x, y, −1 + z and 1 + x, y, 1 + z. These interactions feature a centroid-to-centroid distance of 3.783 (2) Å, a dihedral angle of 7.57 (10)°, and a slippage of 1.00–1.17 Å, consistent with a parallel-displaced stacking motif, further consolidating the three-dimensional supramolecular assembly.
|
| Figure 2 Crystal packing of (I) viewed along the a-axis direction. Intermolecular hydrogen bonds are shown as dashed lines. |
4. Hirshfeld surface analysis
To further investigate the intermolecular interactions present in the title compound, a Hirshfeld surface analysis was performed using CrystalExplorer17 (Spackman et al., 2021
), and the corresponding two-dimensional fingerprint plots were generated. The three-dimensional Hirshfeld surface of the complex, mapped over normalized contact distance (dnorm), is shown in Fig. 3
. Intense red spots are clearly visible near atoms O1W, O2W, O2A, and O3B, indicating close contacts associated with strong hydrogen bonding. These visual cues correspond well with the short O—H⋯O and N—H⋯O hydrogen bonds identified crystallographically. Quantitative surface analysis reveal that O⋯H/H⋯O contacts dominate the intermolecular landscape, contributing 42.3% of the total surface. H⋯H contacts contribute 26.2%, indicative of extensive van der Waals interactions (Fig. 4
). Additional contributions are observed from N⋯H/H⋯N (12.0%), C⋯C (7.6%; π–π stacking between aromatic rings), H⋯C/C⋯H (5.1%; weak C—H⋯π and C—H⋯Csp2 interactions), C⋯N/N⋯C (3.1%), N⋯O/O⋯N (2.1%), and C⋯O/O⋯C (0.7%) contacts. The fingerprint plot for O⋯H/H⋯O contacts exhibits a prominent symmetric double-spike pattern, characteristic of directional and geometrically well-matched hydrogen bonds. This pattern reflects nearly equal internal and external contact distances (di ≃ de), consistent with classical hydrogen-bonding geometry. The symmetry of the spikes also supports the occurrence of bifurcated hydrogen bonding, notably where O1W acts as a donor to two acceptors (O2A). These interactions, in combination with π–π stacking, reinforce the stability and cohesion of the three-dimensional supramolecular architecture.
| Figure 3 View of the three-dimensional Hirshfeld surface of (I) plotted over dnorm. Hydrogen bonds are indicated by red dotted lines. |
| Figure 4 The two-dimensional fingerprint plots for (I), showing all interactions and different contact types. The di and de values represent the closest internal and external distances (in Å) from given points on the Hirshfeld surface. |
5. Database survey
A search of the Cambridge Structural Database (CSD, version 6.00, April 2025; Groom et al., 2016
) yielded six calcium(II) complexes featuring nicotinamide ligands. In these structures, the nicotinamide molecule is typically coordinated to the calcium atom via its pyridyl nitrogen atom, while the amide moiety remains non-coordinating. Coordinated water molecules and counter-ions such as nitrate or chloride are present and contribute to the formation of extended supramolecular networks through hydrogen bonding. On a broader scale, more than 400 crystal structures involving nicotinamide ligands bound to various metal centers have been reported. These complexes frequently exhibit N—H⋯O and O—H⋯O hydrogen bonding interactions, and in some cases, π–π stacking between pyridine rings. Notable structurally related calcium–nicotinamide complexes include CSD refcode BAFZER, a pyridine-3-carboxamide derivative featuring extended hydrogen bonding (Song et al., 2020
); KOPBIC and KOPBOI, chain-type and monomeric complexes containing chloride and nicotinamide ligands (Braga et al., 2014
); REZWAW and REZWEA, which feature coordinated water molecule and nicotinamide with chloride counter-ions (Braga et al., 2011
); and YEKHEF, a bis(pyridine-3-carboxamide) calcium complex incorporating trinitrophenolate ligands (Parsekar et al., 2022
). These structures demonstrate the flexible coordination behavior of nicotinamide and its consistent role in participating in metal–organic assemblies through directional non-covalent interactions. In addition, approximately 70 calcium(II) complexes containing nitrate anions are reported in the CSD. In most of these, nitrate acts as a bidentate ligand coordinating in a κ2O,O′ fashion. Bridging coordination modes (μ2-κ2O,O′), in which the nitrate anion links two calcium atoms, are also observed. Tridentate coordination (κ3O,O′,O′′) is extremely rare. In other structures, nitrate remains as an uncoordinated counter-ion and functions as a hydrogen-bond acceptor in the formation of supramolecular networks.
6. Synthesis and crystallization
The title compound was synthesized by a mechanochemical method using a ball mill operating at 21 Hz. A mixture of calcium nitrate tetrahydrate (2.3619 g, 0.0100 mol) and nicotinamide (2.4426 g, 0.0200 mol) was ground in a ball mill at room temperature for 9–12 minutes. The product yield was 87.0%. The resulting powder was dissolved in ethanol, and colorless prismatic crystals, stable at room temperature, were obtained by slow evaporation in a vacuum desiccator over a saturated CaCl2 solution after 15 days. Suitable single crystals were selected for X-ray diffraction analysis.
7. Refinement
Crystal data, data collection and structure details are summarized in Table 3
. Hydrogen atoms bonded to carbon atoms were placed in geometrically idealized positions, with C—H = 0.93 Å and refined using a riding model with Uiso(H) = 1.2Ueq(C). The hydrogen atoms of the coordinated water molecules and the amino groups were located from difference-Fourier maps and refined with restrained geometry (O—H and N—H distances) and displacement parameters.
|
Supporting information
CCDC reference: 2476945
contains datablock I. DOI: https://doi.org/10.1107/S2056989025006759/hb8147sup1.cif
Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S2056989025006759/hb8147Isup2.hkl
| [Ca(NO3)2(C6H6N2O)2(H2O)2] | F(000) = 920 |
| Mr = 444.39 | Dx = 1.541 Mg m−3 |
| Monoclinic, P21/n | Cu Kα radiation, λ = 1.54184 Å |
| a = 7.5454 (3) Å | Cell parameters from 3138 reflections |
| b = 24.8759 (9) Å | θ = 4.3–75.6° |
| c = 10.7807 (4) Å | µ = 3.44 mm−1 |
| β = 108.777 (4)° | T = 292 K |
| V = 1915.83 (13) Å3 | Block, colourless |
| Z = 4 | 0.3 × 0.2 × 0.15 mm |
| Xcalibur, Ruby diffractometer | 3862 independent reflections |
| Radiation source: Enhance (Cu) X-ray Source | 3249 reflections with I > 2σ(I) |
| Graphite monochromator | Rint = 0.029 |
| Detector resolution: 10.2576 pixels mm-1 | θmax = 76.1°, θmin = 3.6° |
| ω scans | h = −9→4 |
| Absorption correction: multi-scan (CrysAlisPro; Rigaku OD, 2022). | k = −21→30 |
| Tmin = 0.695, Tmax = 1.000 | l = −12→13 |
| 7612 measured reflections |
| Refinement on F2 | Hydrogen site location: mixed |
| Least-squares matrix: full | H atoms treated by a mixture of independent and constrained refinement |
| R[F2 > 2σ(F2)] = 0.041 | w = 1/[σ2(Fo2) + (0.0628P)2 + 0.3395P] where P = (Fo2 + 2Fc2)/3 |
| wR(F2) = 0.114 | (Δ/σ)max < 0.001 |
| S = 1.03 | Δρmax = 0.28 e Å−3 |
| 3862 reflections | Δρmin = −0.22 e Å−3 |
| 295 parameters | Extinction correction: SHELXL2019/3 (Sheldrick, 2015b), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
| 8 restraints | Extinction coefficient: 0.0024 (3) |
| Primary atom site location: dual |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| x | y | z | Uiso*/Ueq | ||
| Ca1 | 0.67003 (6) | 0.39970 (2) | 0.68777 (4) | 0.03229 (14) | |
| O4B | 1.0018 (2) | 0.37641 (6) | 0.68407 (17) | 0.0493 (4) | |
| O2W | 0.8098 (2) | 0.48033 (6) | 0.64428 (17) | 0.0468 (4) | |
| O2B | 0.8417 (2) | 0.30884 (6) | 0.71333 (18) | 0.0499 (4) | |
| O1W | 0.4593 (3) | 0.33030 (7) | 0.6873 (2) | 0.0579 (5) | |
| O1B | 0.8260 (3) | 0.40080 (7) | 0.91112 (15) | 0.0547 (4) | |
| N3B | 0.9890 (2) | 0.32726 (7) | 0.70013 (18) | 0.0392 (4) | |
| O1A | 0.6075 (3) | 0.37876 (7) | 0.46656 (15) | 0.0527 (4) | |
| O4A | 0.4497 (3) | 0.45182 (8) | 0.77806 (17) | 0.0599 (5) | |
| O3A | 0.2005 (2) | 0.49445 (8) | 0.6654 (2) | 0.0627 (5) | |
| O2A | 0.3761 (3) | 0.45368 (8) | 0.56996 (17) | 0.0592 (5) | |
| N3A | 0.3399 (3) | 0.46709 (7) | 0.6718 (2) | 0.0427 (4) | |
| O3B | 1.1193 (2) | 0.29668 (7) | 0.7045 (2) | 0.0696 (6) | |
| N2B | 0.7909 (4) | 0.46252 (9) | 1.0519 (2) | 0.0610 (6) | |
| C6B | 0.8402 (3) | 0.41447 (9) | 1.0239 (2) | 0.0403 (5) | |
| N1A | 0.3231 (3) | 0.43303 (9) | 0.0959 (2) | 0.0570 (5) | |
| C1B | 0.9154 (3) | 0.37523 (8) | 1.1338 (2) | 0.0368 (4) | |
| N2A | 0.5831 (4) | 0.29261 (9) | 0.4060 (2) | 0.0690 (7) | |
| N1B | 0.9965 (3) | 0.28306 (8) | 1.1918 (3) | 0.0623 (6) | |
| C1A | 0.4714 (3) | 0.36137 (8) | 0.24086 (19) | 0.0363 (4) | |
| C2A | 0.4057 (4) | 0.41346 (9) | 0.2157 (2) | 0.0475 (5) | |
| H2A | 0.420138 | 0.436219 | 0.286721 | 0.057* | |
| C6A | 0.5592 (3) | 0.34461 (9) | 0.3802 (2) | 0.0410 (5) | |
| C2B | 0.9309 (4) | 0.32181 (9) | 1.1026 (3) | 0.0482 (5) | |
| H2B | 0.893628 | 0.312300 | 1.014492 | 0.058* | |
| C5A | 0.4520 (4) | 0.32777 (10) | 0.1350 (2) | 0.0515 (6) | |
| H5A | 0.494550 | 0.292461 | 0.147272 | 0.062* | |
| C5B | 0.9718 (4) | 0.38893 (9) | 1.2648 (2) | 0.0513 (6) | |
| H5B | 0.963082 | 0.424312 | 1.290129 | 0.062* | |
| C3A | 0.3056 (4) | 0.39995 (11) | −0.0036 (2) | 0.0563 (6) | |
| H3A | 0.247755 | 0.412757 | −0.088068 | 0.068* | |
| C4A | 0.3681 (4) | 0.34791 (11) | 0.0112 (2) | 0.0620 (7) | |
| H4A | 0.354019 | 0.326380 | −0.061917 | 0.074* | |
| C4B | 1.0411 (5) | 0.34951 (12) | 1.3576 (3) | 0.0655 (8) | |
| H4B | 1.080955 | 0.357922 | 1.446329 | 0.079* | |
| C3B | 1.0502 (4) | 0.29799 (12) | 1.3170 (3) | 0.0657 (8) | |
| H3B | 1.096600 | 0.271718 | 1.380608 | 0.079* | |
| H2BA | 0.754 (4) | 0.4861 (9) | 0.990 (2) | 0.067 (9)* | |
| H2AA | 0.632 (4) | 0.2829 (13) | 0.4866 (14) | 0.077 (10)* | |
| H2BB | 0.800 (5) | 0.4726 (14) | 1.1305 (16) | 0.083 (11)* | |
| H2AB | 0.547 (5) | 0.2684 (10) | 0.347 (2) | 0.079 (10)* | |
| H2WA | 0.751 (4) | 0.4995 (10) | 0.5789 (19) | 0.059 (8)* | |
| H1WA | 0.3466 (18) | 0.3343 (13) | 0.682 (3) | 0.068 (9)* | |
| H1WB | 0.486 (4) | 0.2973 (5) | 0.682 (3) | 0.069 (9)* | |
| H2WB | 0.921 (2) | 0.4763 (19) | 0.646 (4) | 0.118 (16)* |
| U11 | U22 | U33 | U12 | U13 | U23 | |
| Ca1 | 0.0386 (2) | 0.0279 (2) | 0.0297 (2) | 0.00102 (16) | 0.01011 (16) | −0.00019 (14) |
| O4B | 0.0591 (10) | 0.0293 (7) | 0.0599 (10) | −0.0019 (7) | 0.0198 (8) | 0.0047 (7) |
| O2W | 0.0478 (9) | 0.0351 (8) | 0.0556 (10) | 0.0002 (7) | 0.0139 (8) | 0.0072 (7) |
| O2B | 0.0421 (8) | 0.0426 (8) | 0.0689 (11) | −0.0012 (7) | 0.0235 (8) | 0.0038 (8) |
| O1W | 0.0513 (10) | 0.0392 (9) | 0.0926 (14) | −0.0053 (8) | 0.0362 (10) | 0.0000 (9) |
| O1B | 0.0630 (11) | 0.0628 (11) | 0.0319 (8) | 0.0128 (9) | 0.0065 (7) | −0.0021 (7) |
| N3B | 0.0393 (9) | 0.0327 (9) | 0.0436 (9) | 0.0008 (7) | 0.0106 (7) | −0.0003 (7) |
| O1A | 0.0720 (11) | 0.0480 (9) | 0.0350 (8) | −0.0019 (9) | 0.0129 (7) | −0.0094 (7) |
| O4A | 0.0649 (11) | 0.0678 (12) | 0.0464 (9) | 0.0157 (10) | 0.0171 (8) | 0.0025 (9) |
| O3A | 0.0501 (10) | 0.0502 (10) | 0.0915 (14) | 0.0139 (8) | 0.0279 (10) | −0.0030 (9) |
| O2A | 0.0686 (11) | 0.0631 (11) | 0.0467 (9) | 0.0261 (9) | 0.0197 (8) | 0.0074 (8) |
| N3A | 0.0432 (10) | 0.0321 (9) | 0.0556 (11) | 0.0026 (8) | 0.0200 (9) | −0.0001 (8) |
| O3B | 0.0448 (9) | 0.0398 (9) | 0.1299 (19) | 0.0071 (8) | 0.0361 (11) | 0.0030 (10) |
| N2B | 0.0946 (18) | 0.0422 (11) | 0.0405 (11) | 0.0214 (12) | 0.0138 (12) | 0.0064 (9) |
| C6B | 0.0443 (12) | 0.0404 (11) | 0.0321 (9) | 0.0045 (9) | 0.0065 (9) | 0.0005 (8) |
| N1A | 0.0712 (14) | 0.0459 (11) | 0.0516 (12) | 0.0029 (11) | 0.0168 (11) | 0.0109 (9) |
| C1B | 0.0382 (10) | 0.0347 (10) | 0.0361 (10) | 0.0017 (9) | 0.0098 (8) | 0.0009 (8) |
| N2A | 0.117 (2) | 0.0409 (12) | 0.0364 (11) | 0.0119 (13) | 0.0067 (12) | −0.0006 (9) |
| N1B | 0.0690 (15) | 0.0347 (10) | 0.0839 (17) | 0.0078 (10) | 0.0255 (13) | 0.0071 (11) |
| C1A | 0.0423 (11) | 0.0335 (10) | 0.0332 (10) | −0.0040 (9) | 0.0124 (8) | −0.0032 (8) |
| C2A | 0.0607 (14) | 0.0370 (11) | 0.0447 (12) | 0.0021 (10) | 0.0167 (11) | −0.0025 (9) |
| C6A | 0.0492 (12) | 0.0394 (11) | 0.0334 (10) | 0.0011 (9) | 0.0121 (9) | −0.0048 (9) |
| C2B | 0.0536 (13) | 0.0367 (11) | 0.0543 (13) | 0.0052 (10) | 0.0176 (11) | −0.0036 (10) |
| C5A | 0.0749 (16) | 0.0399 (12) | 0.0388 (11) | 0.0007 (12) | 0.0172 (11) | −0.0051 (9) |
| C5B | 0.0733 (17) | 0.0381 (12) | 0.0383 (11) | 0.0047 (11) | 0.0121 (11) | 0.0007 (9) |
| C3A | 0.0656 (16) | 0.0602 (16) | 0.0404 (12) | −0.0086 (13) | 0.0132 (11) | 0.0098 (11) |
| C4A | 0.091 (2) | 0.0587 (16) | 0.0339 (11) | −0.0082 (15) | 0.0167 (12) | −0.0085 (11) |
| C4B | 0.089 (2) | 0.0599 (16) | 0.0414 (13) | 0.0072 (15) | 0.0130 (13) | 0.0135 (12) |
| C3B | 0.0740 (18) | 0.0491 (15) | 0.0721 (19) | 0.0097 (14) | 0.0211 (15) | 0.0280 (14) |
| Ca1—O4B | 2.5825 (18) | N1A—C2A | 1.333 (3) |
| Ca1—O2W | 2.3820 (16) | N1A—C3A | 1.325 (3) |
| Ca1—O2B | 2.5752 (17) | C1B—C2B | 1.385 (3) |
| Ca1—O1W | 2.3459 (18) | C1B—C5B | 1.381 (3) |
| Ca1—O1B | 2.3150 (16) | N2A—C6A | 1.323 (3) |
| Ca1—O1A | 2.3359 (15) | N2A—H2AA | 0.863 (10) |
| Ca1—O4A | 2.5362 (19) | N2A—H2AB | 0.852 (10) |
| Ca1—O2A | 2.5537 (18) | N1B—C2B | 1.339 (3) |
| O4B—N3B | 1.243 (2) | N1B—C3B | 1.332 (4) |
| O2W—H2WA | 0.848 (10) | C1A—C2A | 1.383 (3) |
| O2W—H2WB | 0.844 (10) | C1A—C6A | 1.493 (3) |
| O2B—N3B | 1.252 (2) | C1A—C5A | 1.384 (3) |
| O1W—H1WA | 0.839 (10) | C2A—H2A | 0.9300 |
| O1W—H1WB | 0.852 (10) | C2B—H2B | 0.9300 |
| O1B—C6B | 1.234 (3) | C5A—H5A | 0.9300 |
| N3B—O3B | 1.232 (2) | C5A—C4A | 1.374 (3) |
| O1A—C6A | 1.226 (3) | C5B—H5B | 0.9300 |
| O4A—N3A | 1.238 (3) | C5B—C4B | 1.378 (3) |
| O3A—N3A | 1.236 (2) | C3A—H3A | 0.9300 |
| O2A—N3A | 1.258 (2) | C3A—C4A | 1.370 (4) |
| N2B—C6B | 1.315 (3) | C4A—H4A | 0.9300 |
| N2B—H2BA | 0.862 (10) | C4B—H4B | 0.9300 |
| N2B—H2BB | 0.864 (10) | C4B—C3B | 1.363 (4) |
| C6B—C1B | 1.498 (3) | C3B—H3B | 0.9300 |
| O2W—Ca1—O4B | 72.13 (5) | O3A—N3A—O2A | 121.1 (2) |
| O2W—Ca1—O2B | 121.39 (6) | C6B—N2B—H2BA | 119 (2) |
| O2W—Ca1—O4A | 91.80 (6) | C6B—N2B—H2BB | 123 (2) |
| O2W—Ca1—O2A | 80.09 (6) | H2BA—N2B—H2BB | 117 (3) |
| O2B—Ca1—O4B | 49.31 (5) | O1B—C6B—N2B | 122.4 (2) |
| O1W—Ca1—O4B | 119.65 (6) | O1B—C6B—C1B | 119.3 (2) |
| O1W—Ca1—O2W | 164.15 (7) | N2B—C6B—C1B | 118.29 (19) |
| O1W—Ca1—O2B | 70.83 (6) | C3A—N1A—C2A | 116.8 (2) |
| O1W—Ca1—O4A | 81.35 (7) | C2B—C1B—C6B | 118.3 (2) |
| O1W—Ca1—O2A | 84.63 (7) | C5B—C1B—C6B | 124.2 (2) |
| O1B—Ca1—O4B | 81.25 (6) | C5B—C1B—C2B | 117.6 (2) |
| O1B—Ca1—O2W | 94.91 (7) | C6A—N2A—H2AA | 118 (2) |
| O1B—Ca1—O2B | 80.17 (6) | C6A—N2A—H2AB | 123 (2) |
| O1B—Ca1—O1W | 97.38 (7) | H2AA—N2A—H2AB | 119 (3) |
| O1B—Ca1—O1A | 158.82 (7) | C3B—N1B—C2B | 116.7 (2) |
| O1B—Ca1—O4A | 76.78 (6) | C2A—C1A—C6A | 118.31 (19) |
| O1B—Ca1—O2A | 125.48 (6) | C2A—C1A—C5A | 117.9 (2) |
| O1A—Ca1—O4B | 79.19 (6) | C5A—C1A—C6A | 123.8 (2) |
| O1A—Ca1—O2W | 86.77 (6) | N1A—C2A—C1A | 124.0 (2) |
| O1A—Ca1—O2B | 80.96 (6) | N1A—C2A—H2A | 118.0 |
| O1A—Ca1—O1W | 85.39 (7) | C1A—C2A—H2A | 118.0 |
| O1A—Ca1—O4A | 124.32 (6) | O1A—C6A—N2A | 122.0 (2) |
| O1A—Ca1—O2A | 75.63 (6) | O1A—C6A—C1A | 119.9 (2) |
| O4A—Ca1—O4B | 151.52 (6) | N2A—C6A—C1A | 118.10 (19) |
| O4A—Ca1—O2B | 140.96 (6) | C1B—C2B—H2B | 118.1 |
| O4A—Ca1—O2A | 49.50 (5) | N1B—C2B—C1B | 123.9 (2) |
| O2A—Ca1—O4B | 143.26 (6) | N1B—C2B—H2B | 118.1 |
| O2A—Ca1—O2B | 147.25 (6) | C1A—C5A—H5A | 120.8 |
| N3B—O4B—Ca1 | 95.69 (12) | C4A—C5A—C1A | 118.3 (2) |
| Ca1—O2W—H2WA | 119 (2) | C4A—C5A—H5A | 120.8 |
| Ca1—O2W—H2WB | 113 (3) | C1B—C5B—H5B | 120.4 |
| H2WA—O2W—H2WB | 109 (4) | C4B—C5B—C1B | 119.1 (2) |
| N3B—O2B—Ca1 | 95.80 (12) | C4B—C5B—H5B | 120.4 |
| Ca1—O1W—H1WA | 126 (2) | N1A—C3A—H3A | 118.2 |
| Ca1—O1W—H1WB | 122 (2) | N1A—C3A—C4A | 123.5 (2) |
| H1WA—O1W—H1WB | 112 (3) | C4A—C3A—H3A | 118.2 |
| C6B—O1B—Ca1 | 151.91 (16) | C5A—C4A—H4A | 120.3 |
| O4B—N3B—O2B | 119.18 (18) | C3A—C4A—C5A | 119.4 (2) |
| O3B—N3B—O4B | 121.04 (19) | C3A—C4A—H4A | 120.3 |
| O3B—N3B—O2B | 119.77 (18) | C5B—C4B—H4B | 120.6 |
| C6A—O1A—Ca1 | 147.46 (16) | C3B—C4B—C5B | 118.9 (3) |
| N3A—O4A—Ca1 | 97.34 (13) | C3B—C4B—H4B | 120.6 |
| N3A—O2A—Ca1 | 95.91 (13) | N1B—C3B—C4B | 123.8 (2) |
| O4A—N3A—O2A | 117.23 (19) | N1B—C3B—H3B | 118.1 |
| O3A—N3A—O4A | 121.7 (2) | C4B—C3B—H3B | 118.1 |
| Ca1—O4B—N3B—O2B | −1.3 (2) | N1A—C3A—C4A—C5A | 0.8 (5) |
| Ca1—O4B—N3B—O3B | 179.5 (2) | C1B—C5B—C4B—C3B | −0.6 (5) |
| Ca1—O2B—N3B—O4B | 1.3 (2) | C1A—C5A—C4A—C3A | −0.5 (4) |
| Ca1—O2B—N3B—O3B | −179.44 (19) | C2A—N1A—C3A—C4A | −0.3 (4) |
| Ca1—O1B—C6B—N2B | −38.9 (5) | C2A—C1A—C6A—O1A | −15.3 (3) |
| Ca1—O1B—C6B—C1B | 140.9 (3) | C2A—C1A—C6A—N2A | 164.9 (3) |
| Ca1—O1A—C6A—N2A | −25.1 (5) | C2A—C1A—C5A—C4A | −0.2 (4) |
| Ca1—O1A—C6A—C1A | 155.2 (2) | C6A—C1A—C2A—N1A | −179.3 (2) |
| Ca1—O4A—N3A—O3A | 178.72 (18) | C6A—C1A—C5A—C4A | 179.9 (2) |
| Ca1—O4A—N3A—O2A | −1.4 (2) | C2B—C1B—C5B—C4B | 0.4 (4) |
| Ca1—O2A—N3A—O4A | 1.4 (2) | C2B—N1B—C3B—C4B | 0.2 (5) |
| Ca1—O2A—N3A—O3A | −178.73 (18) | C5A—C1A—C2A—N1A | 0.8 (4) |
| O1B—C6B—C1B—C2B | −12.9 (3) | C5A—C1A—C6A—O1A | 164.6 (2) |
| O1B—C6B—C1B—C5B | 166.7 (2) | C5A—C1A—C6A—N2A | −15.2 (4) |
| N2B—C6B—C1B—C2B | 166.9 (2) | C5B—C1B—C2B—N1B | 0.2 (4) |
| N2B—C6B—C1B—C5B | −13.6 (4) | C5B—C4B—C3B—N1B | 0.3 (5) |
| C6B—C1B—C2B—N1B | 179.8 (2) | C3A—N1A—C2A—C1A | −0.5 (4) |
| C6B—C1B—C5B—C4B | −179.2 (2) | C3B—N1B—C2B—C1B | −0.5 (4) |
| D—H···A | D—H | H···A | D···A | D—H···A |
| N2A—H2AB···O3Bi | 0.85 (1) | 2.42 (2) | 3.180 (3) | 149 (3) |
| N2A—H2AA···O2B | 0.86 (1) | 2.53 (2) | 3.284 (3) | 146 (3) |
| N2B—H2BA···N1Aii | 0.86 (1) | 2.21 (2) | 3.024 (3) | 157 (3) |
| N2B—H2BB···O3Aiii | 0.86 (1) | 2.35 (1) | 3.211 (3) | 174 (3) |
| O1W—H1WA···O3Biv | 0.84 (1) | 2.04 (2) | 2.761 (3) | 144 (3) |
| O1W—H1WB···N1Bi | 0.85 (1) | 2.00 (1) | 2.833 (3) | 164 (3) |
| O2W—H2WA···O2Aii | 0.85 (1) | 1.97 (1) | 2.813 (2) | 178 (3) |
| O2W—H2WB···O3Av | 0.84 (1) | 2.10 (2) | 2.904 (3) | 160 (4) |
| C5A—H5A···O3Bi | 0.93 | 2.41 | 3.336 (3) | 174 |
| C5B—H5B···O3Aiii | 0.93 | 2.49 | 3.362 (3) | 155 |
| Symmetry codes: (i) x−1/2, −y+1/2, z−1/2; (ii) −x+1, −y+1, −z+1; (iii) −x+1, −y+1, −z+2; (iv) x−1, y, z; (v) x+1, y, z. |
Acknowledgements
The authors are grateful to the Laboratory of Complex Compounds, Institute of Bioorganic Chemistry, Academy of Sciences of Uzbekistan, for support and access to research facilities.
References
Braga, D., Grepioni, F., Lampronti, G. I., Maini, L., Rubini, K., Turrina, A. & Zorzi, F. (2014). CrystEngComm 16, 7452–7458. Web of Science CSD CrossRef Google Scholar
Braga, D., Grepioni, F., Lampronti, G. I., Maini, L. & Turrina, A. (2011). Cryst. Growth Des. 11, 5621–5627. Web of Science CSD CrossRef CAS Google Scholar
Dolomanov, O. V., Bourhis, L. J., Gildea, R. J., Howard, J. A. K. & Puschmann, H. (2009). J. Appl. Cryst. 42, 339–341. Web of Science CrossRef CAS IUCr Journals Google Scholar
Drzewiecka, A., Koziol, A. E., Klepka, M. T., Wolska, A., Jimenez-Pulido, S. B., Lis, T., Ostrowska, K. & Struga, M. (2013). Chem. Phys. Lett. 559, 41–45. Web of Science CSD CrossRef Google Scholar
Groom, C. R., Bruno, I. J., Lightfoot, M. P. & Ward, S. C. (2016). Acta Cryst. B72, 171–179. Web of Science CrossRef IUCr Journals Google Scholar
Isin, E. M. & Guengerich, F. P. (2007). Biochim. Biophys. Acta 1770, 314–329. Web of Science CrossRef PubMed Google Scholar
Meyer-Ficca, M. & Kirkland, J. B. (2016). Adv. Nutr. 7, 556–558. Web of Science PubMed Google Scholar
Parsekar, N. U., Narvekar, K. U. & Srinivasan, B. R. (2022). Z. Naturforsch., B: Chem. Sci. 77(4-5), 211-219. Google Scholar
Pricop, L., Madalan, A. M. & Hanganu, A. (2022). Rev. Roum. Chim. 67, 365–371. Google Scholar
Pricop, L., Marinas, I. C., Hanganu, A., Ganciarov, M., Mădălan, A. M. & Miclău, M. O. (2025). Crystals 15, 140. Web of Science CrossRef Google Scholar
Rigaku OD (2022). CrysAlis PRO. Rigaku Oxford Diffraction, Yarnton, England. Google Scholar
Sheldrick, G. M. (2015a). Acta Cryst. A71, 3–8. Web of Science CrossRef IUCr Journals Google Scholar
Sheldrick, G. M. (2015b). Acta Cryst. C71, 3–8. Web of Science CrossRef IUCr Journals Google Scholar
Song, L., Robeyns, K., Tumanov, N., Wouters, J. & Leyssens, T. (2020). Chem. Commun. 56, 13229–13232. Web of Science CSD CrossRef CAS Google Scholar
Spackman, P. R., Turner, M. J., McKinnon, J. J., Wolff, S. K., Grimwood, D. J., Jayatilaka, D. & Spackman, M. A. (2021). J. Appl. Cryst. 54, 1006–1011. Web of Science CrossRef CAS IUCr Journals Google Scholar
Sun, Y., Li, Y., Zhang, Y. & Wang, X. (2018). J. Coord. Chem. 71, 1234–1245. Web of Science CrossRef Google Scholar
Westrip, S. P. (2010). J. Appl. Cryst. 43, 920–925. Web of Science CrossRef CAS IUCr Journals Google Scholar
Xue, J., Jiang, Y., Li, W., Yang, L., Xu, Y., Zhao, G., Zhang, G., Bu, X., Liu, K., Chen, J. & Wu, J. (2015). Spectrochim. Acta A Mol. Biomol. Spectrosc. 137, 864–870. Web of Science CSD CrossRef PubMed Google Scholar
Zhang, Y., Liu, Q., He, J. & Tang, L. (2024). J. Biol. Inorg. Chem. 29, 445–456. Google Scholar
This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
access
journal menu



