research communications\(\def\hfill{\hskip 5em}\def\hfil{\hskip 3em}\def\eqno#1{\hfil {#1}}\)

Journal logoCRYSTALLOGRAPHIC
COMMUNICATIONS
ISSN: 2056-9890

Synthesis and structure of di­aqua­bis­­(nicotinamide-κO)bis­­(nitrato-κ2O,O′)calcium(II)

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aKarakalpak State University named after Berdakh, Republic of Karakalpakstan, Abdirova Street 1, Nukus 742012, Karakalpakstan, bNational University of Uzbekistan named after Mirzo Ulugbek, University Street, 4, Tashkent 100174, Uzbekistan, cInstitute of Bioorganic Chemistry, Academy of Sciences of Uzbekistan, 100125, M., Ulugbek Str 83, Tashkent, Uzbekistan, and dKarakalpakstan Medical Institute, 106 A. Dosnazarov Street, 230105 Nukus City, Uzbekistan
*Correspondence e-mail: [email protected]

Edited by W. T. A. Harrison, University of Aberdeen, United Kingdom (Received 7 July 2025; accepted 29 July 2025; online 5 August 2025)

The title complex, [Ca(NO3)2(C6H6N2O)2(H2O)2], crystallizes with an eight-coordinate Ca2+ ion in a distorted trigonal–dodeca­hedral coordination environment. The metal ion is coordinated to two nicotinamide ligands via their carbonyl O atoms, two bidentate nitrate anions and two water mol­ecules. The nicotinamide ligands adopt a nearly trans geometry, while the nitrate anions and aqua ligands are arranged in a pseudo-trans fashion. In the crystal, a three-dimensional supra­molecular framework is constructed through N—H⋯O and O—H⋯O hydrogen bonds involving water, nitrate, and nicotinamide functional groups, reinforced by offset ππ stacking inter­actions between nearly parallel pyridine rings [centroid-to-centroid distance = 3.783 (2) Å]. A Hirshfeld surface analysis revealed that the inter­molecular inter­actions are dominated by O⋯H/H⋯O (42.3%) and H⋯H (26.2%) contacts, corresponding to classical hydrogen bonding and van der Waals forces, respectively.

1. Chemical context

Nicotinamide (niacinamide), a water-soluble form of vitamin B3, plays a pivotal role in human metabolism. It serves as a precursor to the essential coenzymes NAD+ and NADP+, which are involved in a wide array of redox reactions. NAD+/NADH participates in over 400 biochemical processes, while NADP+/NADPH is involved in approximately 30 reactions, particularly in cytochrome P450-mediated xenobiotic metabolism (Meyer-Ficca et al., 2016View full citation; Isin et al., 2007View full citation). Beyond its metabolic functions, nicotinamide exhibits versatile coordination behavior due to its ability to donate electron pairs through the pyridine nitro­gen atom and the amide oxygen or nitro­gen atoms. It typically acts as a monodentate ligand via the pyridine N atom, but bidentate and bridging coordination modes have also been observed (Pricop et al., 2022View full citation; Sun et al., 2018View full citation). Mixed-ligand complexes involving nicotinamide and 1,10-phenanthroline with CoII, NiII, CuII, and ZnII have demonstrated various coordination geometries and potential anti­microbial properties (Drzewiecka et al., 2013View full citation). Similarly, cadmium(II) complexes with nicotinamide, nitrate, and oxalate ligands have shown promising pharmacological activity (Pricop et al., 2025View full citation). In coordination chemistry, the nitrate anion can function as a counter-ion, auxiliary ligand, or redox-active participant. Its inclusion in metal–nicotinamide complexes, such as with calcium(II), may enhance reactivity through NO-release pathways. For instance, recent work by Zhang et al. (2024View full citation) shows intra­cellular NO release from nitrate-containing metal complexes, indicating their potential as therapeutic NO donors. Calcium is a biologically essential element involved in diverse physiological roles including bone mineralization, muscle contraction, nerve transmission, and blood coagulation. Emerging research has highlighted calcium's regulatory function in intra­cellular signaling, gene expression, and metabolic control. Calcium(II)–nicotinamide complexes have garnered inter­est for their structural variety and bioactivity (Braga et al., 2014View full citation; Parsekar et al., 2022View full citation). These include mononuclear species with two nicotinamide and two water ligands and polymeric frameworks where nicotinamide bridges calcium centers (Braga et al., 2011View full citation; Xue et al., 2015View full citation). Mixed-ligand systems incorporating additional donors, such as tri­nitro­phenolates, further demonstrate nicotinamide's coordination flexibility (Parsekar et al., 2022View full citation). In this study, we report the synthesis and crystal structure of the title complex, [Ca(H2O)2(C6H6N2O)2(NO3)2], (I).

[Scheme 1]

2. Structural commentary

The asymmetric unit of (I) contains one calcium(II) cation coordinated to eight oxygen atoms: two from O-monodentate nicotinamide ligands, four from two bidentate nitrate anions, and two from aqua ligands (Fig. 1[link]). The resulting coordination environment forms a distorted CaO8 polyhedron best described as a trigonal dodeca­hedron (also called snub disphenoid). The Ca—O bond lengths (Table 1[link]) range from 2.3150 (16) Å for Ca1—O1B to 2.5825 (18) Å for Ca1—O4B. These values are comparable to those reported in a similar Ca2+–nicotinamide complex (Xue et al., 2015View full citation), where O-monodentate coordination via carbonyl oxygen atoms gave a Ca—O distance of 2.2659 (13) Å, and the Ca—O (water) distance was 2.3774 (11) Å. The nicotinamide ligands in (I) are arranged in a nearly trans fashion, with an O1A—Ca1—O1B bond angle of 158.82 (7)°. Similarly, the aqua ligands adopt an approximately trans orientation [O1W—Ca1—O2W = 164.15 (7)°] and the nitrate oxygen pairs (O2A/O2B and O4A/O4B) also exhibit pseudo-trans arrangements with angles of 147.25 (6)° and 151.52 (6)°, respectively. Both nicotinamide ligands (mol­ecules A and B) exhibit the expected near planarity of their aromatic rings, with r.m.s.d. values of 0.003 and 0.002 Å, respectively. The CONH2 groups are slightly twisted relative to the pyridine rings, with dihedral angles of 15.37 (12) and 13.33 (12)° for mol­ecules A and B, respectively. The pyridine ring planes are roughly parallel, forming an inter­planar angle of 7.57 (14)°, whereas the carboxamide planes are more tilted relative to one another, with an inter­planar angle of 22.24 (17)°. The nitrate anions show a pronounced non-parallel orientation, forming an inter­planar angle of 78.4 (1)°.

Table 1
Selected bond lengths (Å)

Ca1—O4B 2.5825 (18) Ca1—O1B 2.3150 (16)
Ca1—O2W 2.3820 (16) Ca1—O1A 2.3359 (15)
Ca1—O2B 2.5752 (17) Ca1—O4A 2.5362 (19)
Ca1—O1W 2.3459 (18) Ca1—O2A 2.5537 (18)
[Figure 1]
Figure 1
The mol­ecular structure of (I) showing 50% probability displacement ellipsoids.

3. Supra­molecular features

The supra­molecular architecture of (I) is consolidated by a network of hydrogen bonds—including both classical (O—H⋯O, N—H⋯O) and non-classical (C—H⋯O) types—as well as ππ stacking inter­actions, which collectively reinforce the three-dimensional supra­molecular framework. The hydrogen-bonding network involves coordinated water mol­ecules (O1W and O2W), amide –NH2 groups, pyridyl nitro­gen atoms (N1A/N1B), coordinated nitrate oxygen atoms (O2A and O2B) and uncoordinated nitrate oxygen atoms (O3A and O3B) (Table 2[link] and Fig. 2[link]). Propagation of the network along the [100] direction is mediated by O2W—H2WA⋯O2A and N2B—H2BA⋯N1A bonds, related by an inversion center (symmetry operation: 1 − x, 1 − y, 1 − z), while along [001], O1W—H1WB⋯N1B and N2A—H2AB⋯O3B bonds extend the structure via a screw axis (−Mathematical equation + x, Mathematical equation − y, −Mathematical equation + z). Along [010], O2W—H2WB⋯O3A and a weaker C5B—H5B⋯O3A inter­action propagate via inversion/translation symmetry (1 − x, 1 − y, 2 − z). The water mol­ecules serve as pivotal hydrogen-bond donors: O1W links to O3B and N1B, while O2W donates to O2A and O3A. The amide groups contribute significantly, with N2B donating to N1A and O3A and N2A—H2AA⋯O2B, forming an intra­molecular contact. The nitrate groups act as hydrogen-bond acceptors: the coordinated oxygen atoms O2A and O2B engage in classical N—H⋯O and O—H⋯O inter­actions, while the uncoordinated O3A and O3B atoms participate in multiple contacts (six in total), including a notably linear C5A—H5A⋯O3B inter­action (174°), further reinforcing the structure via weak C—H⋯O bonding. Graph-set analysis reveals centrosymmetric R22(8) rings from O2W—H⋯O2A inter­actions; C11(6) chains along [010] (O2W—H2WB⋯O3A), and two distinct chains along [001]: C11(6) from O1W—H1WA⋯O3B and C11(8) from O1W—H1WB⋯N1B. Higher-order ring motifs include R44(12), R66(16), and R86(20), reflecting increasing hydrogen-bonding complexity, with water mol­ecules serving as key structural nodes. In addition to hydrogen bonding, ππ stacking inter­actions are observed between pyridyl rings of nicotinamide ligands, involving centroids Cg1 (C1A–C5A/N1A) and Cg2 (C1B–C5B/N1B), related by the symmetry operations −1 + x, y, −1 + z and 1 + x, y, 1 + z. These inter­actions feature a centroid-to-centroid distance of 3.783 (2) Å, a dihedral angle of 7.57 (10)°, and a slippage of 1.00–1.17 Å, consistent with a parallel-displaced stacking motif, further consolidating the three-dimensional supra­molecular assembly.

Table 2
Hydrogen-bond geometry (Å, °)

D—H⋯A D—H H⋯A DA D—H⋯A
N2A—H2AB⋯O3Bi 0.85 (1) 2.42 (2) 3.180 (3) 149 (3)
N2A—H2AA⋯O2B 0.86 (1) 2.53 (2) 3.284 (3) 146 (3)
N2B—H2BA⋯N1Aii 0.86 (1) 2.21 (2) 3.024 (3) 157 (3)
N2B—H2BB⋯O3Aiii 0.86 (1) 2.35 (1) 3.211 (3) 174 (3)
O1W—H1WA⋯O3Biv 0.84 (1) 2.04 (2) 2.761 (3) 144 (3)
O1W—H1WB⋯N1Bi 0.85 (1) 2.00 (1) 2.833 (3) 164 (3)
O2W—H2WA⋯O2Aii 0.85 (1) 1.97 (1) 2.813 (2) 178 (3)
O2W—H2WB⋯O3Av 0.84 (1) 2.10 (2) 2.904 (3) 160 (4)
C5A—H5A⋯O3Bi 0.93 2.41 3.336 (3) 174
C5B—H5B⋯O3Aiii 0.93 2.49 3.362 (3) 155
Symmetry codes: (i) Mathematical equation; (ii) Mathematical equation; (iii) Mathematical equation; (iv) Mathematical equation; (v) Mathematical equation.
[Figure 2]
Figure 2
Crystal packing of (I) viewed along the a-axis direction. Inter­molecular hydrogen bonds are shown as dashed lines.

4. Hirshfeld surface analysis

To further investigate the inter­molecular inter­actions present in the title compound, a Hirshfeld surface analysis was performed using CrystalExplorer17 (Spackman et al., 2021View full citation), and the corresponding two-dimensional fingerprint plots were generated. The three-dimensional Hirshfeld surface of the complex, mapped over normalized contact distance (dnorm), is shown in Fig. 3[link]. Intense red spots are clearly visible near atoms O1W, O2W, O2A, and O3B, indicating close contacts associated with strong hydrogen bonding. These visual cues correspond well with the short O—H⋯O and N—H⋯O hydrogen bonds identified crystallographically. Qu­anti­tative surface analysis reveal that O⋯H/H⋯O contacts dominate the inter­molecular landscape, contributing 42.3% of the total surface. H⋯H contacts contribute 26.2%, indicative of extensive van der Waals inter­actions (Fig. 4[link]). Additional contributions are observed from N⋯H/H⋯N (12.0%), C⋯C (7.6%; ππ stacking between aromatic rings), H⋯C/C⋯H (5.1%; weak C—H⋯π and C—H⋯Csp2 inter­actions), C⋯N/N⋯C (3.1%), N⋯O/O⋯N (2.1%), and C⋯O/O⋯C (0.7%) contacts. The fingerprint plot for O⋯H/H⋯O contacts exhibits a prominent symmetric double-spike pattern, characteristic of directional and geometrically well-matched hydrogen bonds. This pattern reflects nearly equal inter­nal and external contact distances (dide), consistent with classical hydrogen-bonding geometry. The symmetry of the spikes also supports the occurrence of bifurcated hydrogen bonding, notably where O1W acts as a donor to two acceptors (O2A). These inter­actions, in combination with ππ stacking, reinforce the stability and cohesion of the three-dimensional supra­molecular architecture.

[Figure 3]
Figure 3
View of the three-dimensional Hirshfeld surface of (I) plotted over dnorm. Hydrogen bonds are indicated by red dotted lines.
[Figure 4]
Figure 4
The two-dimensional fingerprint plots for (I), showing all inter­actions and different contact types. The di and de values represent the closest inter­nal and external distances (in Å) from given points on the Hirshfeld surface.

5. Database survey

A search of the Cambridge Structural Database (CSD, version 6.00, April 2025; Groom et al., 2016View full citation) yielded six calcium(II) complexes featuring nicotinamide ligands. In these structures, the nicotinamide mol­ecule is typically coordinated to the calcium atom via its pyridyl nitro­gen atom, while the amide moiety remains non-coordinating. Coordinated water mol­ecules and counter-ions such as nitrate or chloride are present and contribute to the formation of extended supra­molecular networks through hydrogen bonding. On a broader scale, more than 400 crystal structures involving nicotinamide ligands bound to various metal centers have been reported. These complexes frequently exhibit N—H⋯O and O—H⋯O hydrogen bonding inter­actions, and in some cases, ππ stacking between pyridine rings. Notable structurally related calcium–nicotinamide complexes include CSD refcode BAFZER, a pyridine-3-carboxamide derivative featuring extended hydrogen bonding (Song et al., 2020View full citation); KOPBIC and KOPBOI, chain-type and monomeric complexes containing chloride and nicotinamide ligands (Braga et al., 2014View full citation); REZWAW and REZWEA, which feature coordinated water mol­ecule and nicotinamide with chloride counter-ions (Braga et al., 2011View full citation); and YEKHEF, a bis­(pyridine-3-carboxamide) calcium complex incorporating tri­nitro­phenolate ligands (Parsekar et al., 2022View full citation). These structures demonstrate the flexible coordination behavior of nicotinamide and its consistent role in participating in metal–organic assemblies through directional non-covalent inter­actions. In addition, approximately 70 calcium(II) complexes containing nitrate anions are reported in the CSD. In most of these, nitrate acts as a bidentate ligand coordinating in a κ2O,O′ fashion. Bridging coordination modes (μ2-κ2O,O′), in which the nitrate anion links two calcium atoms, are also observed. Tridentate coordination (κ3O,O′,O′′) is extremely rare. In other structures, nitrate remains as an uncoordinated counter-ion and functions as a hydrogen-bond acceptor in the formation of supra­molecular networks.

6. Synthesis and crystallization

The title compound was synthesized by a mechanochemical method using a ball mill operating at 21 Hz. A mixture of calcium nitrate tetra­hydrate (2.3619 g, 0.0100 mol) and nicotinamide (2.4426 g, 0.0200 mol) was ground in a ball mill at room temperature for 9–12 minutes. The product yield was 87.0%. The resulting powder was dissolved in ethanol, and colorless prismatic crystals, stable at room temperature, were obtained by slow evaporation in a vacuum desiccator over a saturated CaCl2 solution after 15 days. Suitable single crystals were selected for X-ray diffraction analysis.

7. Refinement

Crystal data, data collection and structure refinement details are summarized in Table 3[link]. Hydrogen atoms bonded to carbon atoms were placed in geometrically idealized positions, with C—H = 0.93 Å and refined using a riding model with Uiso(H) = 1.2Ueq(C). The hydrogen atoms of the coordinated water mol­ecules and the amino groups were located from difference-Fourier maps and refined with restrained geometry (O—H and N—H distances) and displacement parameters.

Table 3
Experimental details

Crystal data
Chemical formula [Ca(NO3)2(C6H6N2O)2(H2O)2]
Mr 444.39
Crystal system, space group Monoclinic, P21/n
Temperature (K) 292
a, b, c (Å) 7.5454 (3), 24.8759 (9), 10.7807 (4)
β (°) 108.777 (4)
V3) 1915.83 (13)
Z 4
Radiation type Cu Kα
μ (mm−1) 3.44
Crystal size (mm) 0.3 × 0.2 × 0.15
 
Data collection
Diffractometer Xcalibur, Ruby
Absorption correction Multi-scan (CrysAlis PRO; Rigaku OD, 2022View full citation).
Tmin, Tmax 0.695, 1.000
No. of measured, independent and observed [I > 2σ(I)] reflections 7612, 3862, 3249
Rint 0.029
(sin θ/λ)max−1) 0.630
 
Refinement
R[F2 > 2σ(F2)], wR(F2), S 0.041, 0.114, 1.03
No. of reflections 3862
No. of parameters 295
No. of restraints 8
H-atom treatment H atoms treated by a mixture of independent and constrained refinement
Δρmax, Δρmin (e Å−3) 0.28, −0.22
Computer programs: CrysAlis PRO (Rigaku OD, 2022View full citation), SHELXT2018/2 (Sheldrick, 2015aView full citation), SHELXL2019/3 (Sheldrick, 2015bView full citation), OLEX2 (Dolomanov et al., 2009View full citation) and publCIF (Westrip, 2010View full citation).

Supporting information


Computing details top

Diaquabis(nicotinamide-κO)bis(nitrato-κ2O,O')calcium(II) top
Crystal data top
[Ca(NO3)2(C6H6N2O)2(H2O)2]F(000) = 920
Mr = 444.39Dx = 1.541 Mg m3
Monoclinic, P21/nCu Kα radiation, λ = 1.54184 Å
a = 7.5454 (3) ÅCell parameters from 3138 reflections
b = 24.8759 (9) Åθ = 4.3–75.6°
c = 10.7807 (4) ŵ = 3.44 mm1
β = 108.777 (4)°T = 292 K
V = 1915.83 (13) Å3Block, colourless
Z = 40.3 × 0.2 × 0.15 mm
Data collection top
Xcalibur, Ruby
diffractometer
3862 independent reflections
Radiation source: Enhance (Cu) X-ray Source3249 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.029
Detector resolution: 10.2576 pixels mm-1θmax = 76.1°, θmin = 3.6°
ω scansh = 94
Absorption correction: multi-scan
(CrysAlisPro; Rigaku OD, 2022).
k = 2130
Tmin = 0.695, Tmax = 1.000l = 1213
7612 measured reflections
Refinement top
Refinement on F2Hydrogen site location: mixed
Least-squares matrix: fullH atoms treated by a mixture of independent and constrained refinement
R[F2 > 2σ(F2)] = 0.041 w = 1/[σ2(Fo2) + (0.0628P)2 + 0.3395P]
where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.114(Δ/σ)max < 0.001
S = 1.03Δρmax = 0.28 e Å3
3862 reflectionsΔρmin = 0.22 e Å3
295 parametersExtinction correction: SHELXL2019/3 (Sheldrick, 2015b), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
8 restraintsExtinction coefficient: 0.0024 (3)
Primary atom site location: dual
Special details top

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
Ca10.67003 (6)0.39970 (2)0.68777 (4)0.03229 (14)
O4B1.0018 (2)0.37641 (6)0.68407 (17)0.0493 (4)
O2W0.8098 (2)0.48033 (6)0.64428 (17)0.0468 (4)
O2B0.8417 (2)0.30884 (6)0.71333 (18)0.0499 (4)
O1W0.4593 (3)0.33030 (7)0.6873 (2)0.0579 (5)
O1B0.8260 (3)0.40080 (7)0.91112 (15)0.0547 (4)
N3B0.9890 (2)0.32726 (7)0.70013 (18)0.0392 (4)
O1A0.6075 (3)0.37876 (7)0.46656 (15)0.0527 (4)
O4A0.4497 (3)0.45182 (8)0.77806 (17)0.0599 (5)
O3A0.2005 (2)0.49445 (8)0.6654 (2)0.0627 (5)
O2A0.3761 (3)0.45368 (8)0.56996 (17)0.0592 (5)
N3A0.3399 (3)0.46709 (7)0.6718 (2)0.0427 (4)
O3B1.1193 (2)0.29668 (7)0.7045 (2)0.0696 (6)
N2B0.7909 (4)0.46252 (9)1.0519 (2)0.0610 (6)
C6B0.8402 (3)0.41447 (9)1.0239 (2)0.0403 (5)
N1A0.3231 (3)0.43303 (9)0.0959 (2)0.0570 (5)
C1B0.9154 (3)0.37523 (8)1.1338 (2)0.0368 (4)
N2A0.5831 (4)0.29261 (9)0.4060 (2)0.0690 (7)
N1B0.9965 (3)0.28306 (8)1.1918 (3)0.0623 (6)
C1A0.4714 (3)0.36137 (8)0.24086 (19)0.0363 (4)
C2A0.4057 (4)0.41346 (9)0.2157 (2)0.0475 (5)
H2A0.4201380.4362190.2867210.057*
C6A0.5592 (3)0.34461 (9)0.3802 (2)0.0410 (5)
C2B0.9309 (4)0.32181 (9)1.1026 (3)0.0482 (5)
H2B0.8936280.3123001.0144920.058*
C5A0.4520 (4)0.32777 (10)0.1350 (2)0.0515 (6)
H5A0.4945500.2924610.1472720.062*
C5B0.9718 (4)0.38893 (9)1.2648 (2)0.0513 (6)
H5B0.9630820.4243121.2901290.062*
C3A0.3056 (4)0.39995 (11)0.0036 (2)0.0563 (6)
H3A0.2477550.4127570.0880680.068*
C4A0.3681 (4)0.34791 (11)0.0112 (2)0.0620 (7)
H4A0.3540190.3263800.0619170.074*
C4B1.0411 (5)0.34951 (12)1.3576 (3)0.0655 (8)
H4B1.0809550.3579221.4463290.079*
C3B1.0502 (4)0.29799 (12)1.3170 (3)0.0657 (8)
H3B1.0966000.2717181.3806080.079*
H2BA0.754 (4)0.4861 (9)0.990 (2)0.067 (9)*
H2AA0.632 (4)0.2829 (13)0.4866 (14)0.077 (10)*
H2BB0.800 (5)0.4726 (14)1.1305 (16)0.083 (11)*
H2AB0.547 (5)0.2684 (10)0.347 (2)0.079 (10)*
H2WA0.751 (4)0.4995 (10)0.5789 (19)0.059 (8)*
H1WA0.3466 (18)0.3343 (13)0.682 (3)0.068 (9)*
H1WB0.486 (4)0.2973 (5)0.682 (3)0.069 (9)*
H2WB0.921 (2)0.4763 (19)0.646 (4)0.118 (16)*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
Ca10.0386 (2)0.0279 (2)0.0297 (2)0.00102 (16)0.01011 (16)0.00019 (14)
O4B0.0591 (10)0.0293 (7)0.0599 (10)0.0019 (7)0.0198 (8)0.0047 (7)
O2W0.0478 (9)0.0351 (8)0.0556 (10)0.0002 (7)0.0139 (8)0.0072 (7)
O2B0.0421 (8)0.0426 (8)0.0689 (11)0.0012 (7)0.0235 (8)0.0038 (8)
O1W0.0513 (10)0.0392 (9)0.0926 (14)0.0053 (8)0.0362 (10)0.0000 (9)
O1B0.0630 (11)0.0628 (11)0.0319 (8)0.0128 (9)0.0065 (7)0.0021 (7)
N3B0.0393 (9)0.0327 (9)0.0436 (9)0.0008 (7)0.0106 (7)0.0003 (7)
O1A0.0720 (11)0.0480 (9)0.0350 (8)0.0019 (9)0.0129 (7)0.0094 (7)
O4A0.0649 (11)0.0678 (12)0.0464 (9)0.0157 (10)0.0171 (8)0.0025 (9)
O3A0.0501 (10)0.0502 (10)0.0915 (14)0.0139 (8)0.0279 (10)0.0030 (9)
O2A0.0686 (11)0.0631 (11)0.0467 (9)0.0261 (9)0.0197 (8)0.0074 (8)
N3A0.0432 (10)0.0321 (9)0.0556 (11)0.0026 (8)0.0200 (9)0.0001 (8)
O3B0.0448 (9)0.0398 (9)0.1299 (19)0.0071 (8)0.0361 (11)0.0030 (10)
N2B0.0946 (18)0.0422 (11)0.0405 (11)0.0214 (12)0.0138 (12)0.0064 (9)
C6B0.0443 (12)0.0404 (11)0.0321 (9)0.0045 (9)0.0065 (9)0.0005 (8)
N1A0.0712 (14)0.0459 (11)0.0516 (12)0.0029 (11)0.0168 (11)0.0109 (9)
C1B0.0382 (10)0.0347 (10)0.0361 (10)0.0017 (9)0.0098 (8)0.0009 (8)
N2A0.117 (2)0.0409 (12)0.0364 (11)0.0119 (13)0.0067 (12)0.0006 (9)
N1B0.0690 (15)0.0347 (10)0.0839 (17)0.0078 (10)0.0255 (13)0.0071 (11)
C1A0.0423 (11)0.0335 (10)0.0332 (10)0.0040 (9)0.0124 (8)0.0032 (8)
C2A0.0607 (14)0.0370 (11)0.0447 (12)0.0021 (10)0.0167 (11)0.0025 (9)
C6A0.0492 (12)0.0394 (11)0.0334 (10)0.0011 (9)0.0121 (9)0.0048 (9)
C2B0.0536 (13)0.0367 (11)0.0543 (13)0.0052 (10)0.0176 (11)0.0036 (10)
C5A0.0749 (16)0.0399 (12)0.0388 (11)0.0007 (12)0.0172 (11)0.0051 (9)
C5B0.0733 (17)0.0381 (12)0.0383 (11)0.0047 (11)0.0121 (11)0.0007 (9)
C3A0.0656 (16)0.0602 (16)0.0404 (12)0.0086 (13)0.0132 (11)0.0098 (11)
C4A0.091 (2)0.0587 (16)0.0339 (11)0.0082 (15)0.0167 (12)0.0085 (11)
C4B0.089 (2)0.0599 (16)0.0414 (13)0.0072 (15)0.0130 (13)0.0135 (12)
C3B0.0740 (18)0.0491 (15)0.0721 (19)0.0097 (14)0.0211 (15)0.0280 (14)
Geometric parameters (Å, º) top
Ca1—O4B2.5825 (18)N1A—C2A1.333 (3)
Ca1—O2W2.3820 (16)N1A—C3A1.325 (3)
Ca1—O2B2.5752 (17)C1B—C2B1.385 (3)
Ca1—O1W2.3459 (18)C1B—C5B1.381 (3)
Ca1—O1B2.3150 (16)N2A—C6A1.323 (3)
Ca1—O1A2.3359 (15)N2A—H2AA0.863 (10)
Ca1—O4A2.5362 (19)N2A—H2AB0.852 (10)
Ca1—O2A2.5537 (18)N1B—C2B1.339 (3)
O4B—N3B1.243 (2)N1B—C3B1.332 (4)
O2W—H2WA0.848 (10)C1A—C2A1.383 (3)
O2W—H2WB0.844 (10)C1A—C6A1.493 (3)
O2B—N3B1.252 (2)C1A—C5A1.384 (3)
O1W—H1WA0.839 (10)C2A—H2A0.9300
O1W—H1WB0.852 (10)C2B—H2B0.9300
O1B—C6B1.234 (3)C5A—H5A0.9300
N3B—O3B1.232 (2)C5A—C4A1.374 (3)
O1A—C6A1.226 (3)C5B—H5B0.9300
O4A—N3A1.238 (3)C5B—C4B1.378 (3)
O3A—N3A1.236 (2)C3A—H3A0.9300
O2A—N3A1.258 (2)C3A—C4A1.370 (4)
N2B—C6B1.315 (3)C4A—H4A0.9300
N2B—H2BA0.862 (10)C4B—H4B0.9300
N2B—H2BB0.864 (10)C4B—C3B1.363 (4)
C6B—C1B1.498 (3)C3B—H3B0.9300
O2W—Ca1—O4B72.13 (5)O3A—N3A—O2A121.1 (2)
O2W—Ca1—O2B121.39 (6)C6B—N2B—H2BA119 (2)
O2W—Ca1—O4A91.80 (6)C6B—N2B—H2BB123 (2)
O2W—Ca1—O2A80.09 (6)H2BA—N2B—H2BB117 (3)
O2B—Ca1—O4B49.31 (5)O1B—C6B—N2B122.4 (2)
O1W—Ca1—O4B119.65 (6)O1B—C6B—C1B119.3 (2)
O1W—Ca1—O2W164.15 (7)N2B—C6B—C1B118.29 (19)
O1W—Ca1—O2B70.83 (6)C3A—N1A—C2A116.8 (2)
O1W—Ca1—O4A81.35 (7)C2B—C1B—C6B118.3 (2)
O1W—Ca1—O2A84.63 (7)C5B—C1B—C6B124.2 (2)
O1B—Ca1—O4B81.25 (6)C5B—C1B—C2B117.6 (2)
O1B—Ca1—O2W94.91 (7)C6A—N2A—H2AA118 (2)
O1B—Ca1—O2B80.17 (6)C6A—N2A—H2AB123 (2)
O1B—Ca1—O1W97.38 (7)H2AA—N2A—H2AB119 (3)
O1B—Ca1—O1A158.82 (7)C3B—N1B—C2B116.7 (2)
O1B—Ca1—O4A76.78 (6)C2A—C1A—C6A118.31 (19)
O1B—Ca1—O2A125.48 (6)C2A—C1A—C5A117.9 (2)
O1A—Ca1—O4B79.19 (6)C5A—C1A—C6A123.8 (2)
O1A—Ca1—O2W86.77 (6)N1A—C2A—C1A124.0 (2)
O1A—Ca1—O2B80.96 (6)N1A—C2A—H2A118.0
O1A—Ca1—O1W85.39 (7)C1A—C2A—H2A118.0
O1A—Ca1—O4A124.32 (6)O1A—C6A—N2A122.0 (2)
O1A—Ca1—O2A75.63 (6)O1A—C6A—C1A119.9 (2)
O4A—Ca1—O4B151.52 (6)N2A—C6A—C1A118.10 (19)
O4A—Ca1—O2B140.96 (6)C1B—C2B—H2B118.1
O4A—Ca1—O2A49.50 (5)N1B—C2B—C1B123.9 (2)
O2A—Ca1—O4B143.26 (6)N1B—C2B—H2B118.1
O2A—Ca1—O2B147.25 (6)C1A—C5A—H5A120.8
N3B—O4B—Ca195.69 (12)C4A—C5A—C1A118.3 (2)
Ca1—O2W—H2WA119 (2)C4A—C5A—H5A120.8
Ca1—O2W—H2WB113 (3)C1B—C5B—H5B120.4
H2WA—O2W—H2WB109 (4)C4B—C5B—C1B119.1 (2)
N3B—O2B—Ca195.80 (12)C4B—C5B—H5B120.4
Ca1—O1W—H1WA126 (2)N1A—C3A—H3A118.2
Ca1—O1W—H1WB122 (2)N1A—C3A—C4A123.5 (2)
H1WA—O1W—H1WB112 (3)C4A—C3A—H3A118.2
C6B—O1B—Ca1151.91 (16)C5A—C4A—H4A120.3
O4B—N3B—O2B119.18 (18)C3A—C4A—C5A119.4 (2)
O3B—N3B—O4B121.04 (19)C3A—C4A—H4A120.3
O3B—N3B—O2B119.77 (18)C5B—C4B—H4B120.6
C6A—O1A—Ca1147.46 (16)C3B—C4B—C5B118.9 (3)
N3A—O4A—Ca197.34 (13)C3B—C4B—H4B120.6
N3A—O2A—Ca195.91 (13)N1B—C3B—C4B123.8 (2)
O4A—N3A—O2A117.23 (19)N1B—C3B—H3B118.1
O3A—N3A—O4A121.7 (2)C4B—C3B—H3B118.1
Ca1—O4B—N3B—O2B1.3 (2)N1A—C3A—C4A—C5A0.8 (5)
Ca1—O4B—N3B—O3B179.5 (2)C1B—C5B—C4B—C3B0.6 (5)
Ca1—O2B—N3B—O4B1.3 (2)C1A—C5A—C4A—C3A0.5 (4)
Ca1—O2B—N3B—O3B179.44 (19)C2A—N1A—C3A—C4A0.3 (4)
Ca1—O1B—C6B—N2B38.9 (5)C2A—C1A—C6A—O1A15.3 (3)
Ca1—O1B—C6B—C1B140.9 (3)C2A—C1A—C6A—N2A164.9 (3)
Ca1—O1A—C6A—N2A25.1 (5)C2A—C1A—C5A—C4A0.2 (4)
Ca1—O1A—C6A—C1A155.2 (2)C6A—C1A—C2A—N1A179.3 (2)
Ca1—O4A—N3A—O3A178.72 (18)C6A—C1A—C5A—C4A179.9 (2)
Ca1—O4A—N3A—O2A1.4 (2)C2B—C1B—C5B—C4B0.4 (4)
Ca1—O2A—N3A—O4A1.4 (2)C2B—N1B—C3B—C4B0.2 (5)
Ca1—O2A—N3A—O3A178.73 (18)C5A—C1A—C2A—N1A0.8 (4)
O1B—C6B—C1B—C2B12.9 (3)C5A—C1A—C6A—O1A164.6 (2)
O1B—C6B—C1B—C5B166.7 (2)C5A—C1A—C6A—N2A15.2 (4)
N2B—C6B—C1B—C2B166.9 (2)C5B—C1B—C2B—N1B0.2 (4)
N2B—C6B—C1B—C5B13.6 (4)C5B—C4B—C3B—N1B0.3 (5)
C6B—C1B—C2B—N1B179.8 (2)C3A—N1A—C2A—C1A0.5 (4)
C6B—C1B—C5B—C4B179.2 (2)C3B—N1B—C2B—C1B0.5 (4)
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
N2A—H2AB···O3Bi0.85 (1)2.42 (2)3.180 (3)149 (3)
N2A—H2AA···O2B0.86 (1)2.53 (2)3.284 (3)146 (3)
N2B—H2BA···N1Aii0.86 (1)2.21 (2)3.024 (3)157 (3)
N2B—H2BB···O3Aiii0.86 (1)2.35 (1)3.211 (3)174 (3)
O1W—H1WA···O3Biv0.84 (1)2.04 (2)2.761 (3)144 (3)
O1W—H1WB···N1Bi0.85 (1)2.00 (1)2.833 (3)164 (3)
O2W—H2WA···O2Aii0.85 (1)1.97 (1)2.813 (2)178 (3)
O2W—H2WB···O3Av0.84 (1)2.10 (2)2.904 (3)160 (4)
C5A—H5A···O3Bi0.932.413.336 (3)174
C5B—H5B···O3Aiii0.932.493.362 (3)155
Symmetry codes: (i) x1/2, y+1/2, z1/2; (ii) x+1, y+1, z+1; (iii) x+1, y+1, z+2; (iv) x1, y, z; (v) x+1, y, z.
 

Acknowledgements

The authors are grateful to the Laboratory of Complex Compounds, Institute of Bioorganic Chemistry, Academy of Sciences of Uzbekistan, for support and access to research facilities.

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