research communications
accessSyntheses and structures of spontaneously resolved (2S)-2-phenyl-3-(thiazol-2-yl)-2,3,5,6-tetrahydro-4H-1,3-thiazin-4-one and racemic 2-(furan-2-yl)-3-phenyl-2,3,5,6-tetrahydro-4H-1,3-thiazin-4-one
aDepartment of Biochemistry and Molecular Biology, The Pennsylvania State University, University Park, PA 16802, USA, bDepartment of Chemistry, The Pennsylvania State University, University Park, PA 16802, USA, cMendel Science Center, Villanova University, 800 Lancaster Avenue, Villanova, PA 19085, USA, and dPennsylvania State University, Schuylkill Campus, 200 University Drive, Schuylkill Haven, PA 17972, USA
*Correspondence e-mail: [email protected]
The title compounds, one a thiazole derivative: (2S)-2-phenyl-3-(thiazol-2-yl)-2,3,5,6-tetrahydro-4H-1,3-thiazin-4-one, C13H12N2OS2, and the second a furan derivative: (rac)-2-(furan-2-yl)-3-phenyl-2,3,5,6-tetrahydro-4H-1,3-thiazin-4-one, C14H13NO2S, crystallize in space-groups P212121 and P21/c, respectively, with a single molecule in their asymmetric units. The crystal of the thiazole derivative chosen for data collection was found to consist of the S enantiomer [Flack parameter 0.013 (9)]. The crystal of the furan derivative in the centrosymmetric is a The puckering of the thiazine ring in both the structures is a half-chair. The extended structure of the thiazole derivative shows two weak C—H⋯O type interactions, but no aromatic ring interactions. In the structure of the furan derivative, an extensive and continuous network of C—H⋯O hydrogen bonds between the furan and the substituted thiazine ring, and also between symmetry-related furan rings, results in a continuous layer lying parallel to the (100) plane. Adjacent to this plane is the layer of hydrophobic phenyl rings. Thus, the extended structure comprises alternating layers of and hydrophobic regions, stacked in the a-axis direction. A C—H⋯O interaction between the phenyl ring and the thiazin-4-one moiety and the π–π stacking of the phenyl rings between pairs of symmetry-related molecules further consolidates the extended structure.
1. Chemical context
Compounds with a 2,3-diaryl-2,3,5,6-tetrahydro-4H-1,3-thiazin-4-one scaffold have been shown to have a variety of bioactivities, including antiparasite (Malfara et al., 2021
), antitumor (Chen et al., 2012
; Dandia et al., 2013
), antifungal (Ten Haken & Beatrice, 1983
; Qu et al., 2013
.; Dandia et al., 2004
; Krumkains, 1984
), antitubercular (Dandia et al., 2004
), antidiabetic (Arya et al., 2012
), inhibition of cannabinoid receptor 1 (CB1) (Choi et al., 2008
), inhibition of angiogenesis (possible treatment of eye disease, neoplasm, arteriosclerosis, arthritis, psoriasis, diabetes, and mellitus) (Yi et al., 2012
), regulation of plant growth (Krumkains, 1984
), antimicrobial (Mogilaiah et al., 1999
) and antibacterial (Mahdi & Rasheed, 2023
) effects.
We have previously used our T3P method to synthesize two series of these compounds in which the aryl rings on positions 2 and 3 had a variety of substituents on them (Silverberg et al., 2020
, 2025
). Currently, another series in which one of the aryl rings is a heteroaryl is being synthesized. Here we report the syntheses and crystal structures of two new compounds in this series, one in which there is a thiazole ring attached to N3 (compound 1) and one in which there is a furan ring on C2 (compound 2). Thiazole and furan derivatives are each known for their biological activity (Niu et al., 2023
; Nivrutti, 2024
) and could have interesting effects on the activity of the 2,3,5,6-tetrahydro-4H-1,3-thiazin-4-ones.
The of a racemic solution by direct crystallization to form a conglomerate, a mechanical mixture of separate homochiral crystals, is an uncommon but well-known phenomenon, recognized first by Pasteur (Pasteur, 1848
; Jacques et al., 1981
; Eliel & Wilen, 1994
; Pérez-García & Amabilino, 2007
). It has even been used in the production of chiral active pharmaceutical ingredients (Bredikhin & Bredikhina, 2017
). However, the reasons why this occurs with a minority of molecules are not well understood (Pérez-García & Amabilino, 2007
) and have not yet yielded to attempts to predict occurrence (D'Oria et al., 2010
; Pérez-García & Amabilino, 2007
).
2. Structural commentary
Compounds 1 (Fig. 1
) and 2 (Fig. 2
) crystallize in the orthorhombic P212121 and monoclinic P21/c space groups, respectively, with a single molecule in the respective asymmetric units. The chosen crystal of 1 was found to be composed of molecules with an S configuration at the stereogenic atom C1 [Flack parameter 0.013 (9)]. We had previously observed a similar in another thiazine compound (Yennawar, Bradley et al., 2018
). The crystal of 2 belongs to a centrosymmetric and must be a of molecules.
| Figure 1 The molecular structure of 1 with displacement ellipsoids drawn at the 50% probability level. |
| Figure 2 The molecular structure of 2 with displacement ellipsoids drawn at the 50% probability level. |
The thiazine rings of 1 and 2 both display a half-chair (pucker) conformation [Q = 0.694 (2), 0.6482 (11) Å; θ = 47.75 (17), 47.02 (10)°; φ = 347.4 (3), 349.01 (16)°, respectively] where the sulfur atom forms the back of the chair. We have observed this mode of puckering earlier (Yennawar, Yang et al., 2016
; Yennawar, Fox et al., 2016
; Yennawar, Bradley et al., 2018
), which is different from the screw-boat (Yennawar, Bendinsky et al., 2014
; Yennawar, Fox et al., 2017
; Yennawar, Noble et al., 2017
; Yennawar, Mal et al., 2023
) conformation or the envelope pucker (Yennawar, Singh et al., 2014
).
In the structure of 1, the C5/C6/C7/N2/S2 thiazole ring and the five non-S atoms of the thiazine ring are almost coplanar, while the dihedral angle between the thiazole and the C8–C13 phenyl ring is 81.91 (13)°. In 2, the C5–C10 phenyl and C11–C14/O1 furan rings flip positions as compared to the phenyl and thiazole rings in 1. The phenyl ring is gauche with respect to the plane of the thiazine ring's five non-S atoms. The dihedral angle between the phenyl and furan ring planes is 88.45 (7)°.
3. Supramolecular features
The extended structure of 1 (Table 1
, Fig. 3
) features C7—H7⋯O1 hydrogen bonds forming molecular chains along the c-axis direction and C3—H3B⋯N2 hydrogen bonds forming chains along the a-axis direction. No π–π stacking interactions or layering of any kind is observed in the extended structure. The crystal of 2 on the other hand (Fig. 4
) is brought about by a continuous and extensive network of intermolecular hydrogen bonds (Table 2
). These include the oxygen atom on the substituted thiazine ring acting as a double acceptor for the C13—H13⋯O2 and C14—H14⋯O2 bonds and also between symmetry-related furan rings (C12—H12⋯O1). These interactions result in infinite layers of furan and thiazine moieties lying parallel to the (100) plane. Additional interaction between a carbon atom of the phenyl ring and the oxygen atom on the thiazine ring (C10—H10⋯O2) and the π–π stacking of the phenyl rings between pairs of molecules further consolidate the packing. Alternating layers of (furan and thiazine) and hydrophobic (phenyl) entities, parallel to the (100) plane are a feature of this structure.
| ||||||||||||||||||||||
|
| Figure 3 Crystal packing diagram of 1 with red dotted lines for C—H⋯O contacts and blue dotted lines for the C—H⋯N contacts. |
| Figure 4 Crystal packing diagram of 2 showing alternating layers of and hydrophobic regions. Red dotted lines represent the C—H⋯O contacts. |
4. Database survey
We have previously reported the crystal structures of 2,3-diphenyl-2,3,5,6-tetrahydro-4H-1,3-thiazin-4-one (Yennawar & Silverberg, 2014
, 2015
), N-[(2S,5R)-4-oxo-2,3-diphenyl-1,3-thiazinan-5-yl] acetamide 0.375 hydrate (Yennawar et al., 2015
), (2S)-2-(3-nitrophenyl)-3-phenyl-2,3,5,6-tetrahydro-4H-1,3-thiazin-4-one (Yennawar, Bradley et al., 2018
), rac-2-(4-nitrophenyl)-3-phenyl-2,3,5,6-tetrahydro-4H-1,3-thiazin-4-one (Yennawar, Bradley et al., 2018
), racemic (R*,R*)-2,2′-(1,4-phenylene)bis(3-phenyl-2,3,5,6-tetrahydro-4H-1,3-thiazin-4-one) (Yennawar et al., 2021
), and meso-3,3′-(1,4-phenylene)bis(2-phenyl-2,3,5,6-tetrahydro-4H-1,3-thiazin-4-one) (Yennawar, Moyer & Silverberg, 2018
). A literature survey did not reveal crystal structures of any other 2,3-diaryl-2,3,5,6-tetrahydro-4H-1,3-thiazin-4-ones.
5. Synthesis and crystallization
TLC plates (silica gel GF, 250-micron, 10 × 20 cm, cat. No. P21521) were purchased from Miles Scientific. TLCs were visualized under short wave UV, and then with I2, and then by spraying with ceric ammonium nitrate/sulfuric acid and heating. Infrared spectra were run on a Thermo-Fisher NICOLET iS50 FT-IR using a diamond-ATR attachment for direct powder analysis (Penn State Schuylkill). 1H and 13C NMR experiments (Penn State's shared NMR facility, University Park) were carried out on a Bruker Avance-III-HD 500.20-MHz (1H frequency) instrument using a 5 mm Prodigy (liquid nitrogen cooled) BBOBB-1H/19F/D Z-GRD cryoprobe. Samples were dissolved in pyridine-d5 and analyzed at RT. Typical conditions for 1H acquisition were 1 s relaxation delay, the acquisition time of 3.28 s, the spectral width of 10 kHz, 32 scans. Spectra were zero-filled to 128k points, and multiplied by exponential multiplication (EM with LB = 0.3 Hz) prior to FT. For 13C experiments, data were acquired with power-gated 1H decoupling using a 2 s relaxation delay, with an acquisition time of 1.1 s, spectral width of 29.8 kHz, and 256 scans. Spectra were zero-filled once, and multiplied by EM with LB = 2 Hz prior to FT. MS samples were analyzed for accurate mass by LCMS on a SCIEX Exion LC with a SCIEX 5600+ TripleTOF MS. Separation was achieved on an Agilent Infinity LabPoroshell column 120 EC-C18, 2.1 X 50mm, 2.7-micron particle (p/n 699775-902), column maintained at 313 K. Elution using a reversed phase gradient of 100% (water with 0.1% formic acid) ramped to 100% (acetonitrile with 0.1% formic acid) over 10 min at a flowrate of 0.4 mL min−1. The MS was scanned over 50–1200 Da and calibrated with the SCIEX APCI positive calibrant solution (Part 4460131) prior to sample analysis. Samples were analyzed in ESI positive mode with a DP = 100 V, CE = 10, GAS1 = GAS2 = 60 psi, curtain = 30 psi, ISV = 5500 V, and source temperature of 773 K (Villanova University). Melting points were performed on a Vernier Melt Station (Penn State Schuylkill). Suitable crystals were selected and sequentially mounted using a nylon loop and a dab of paratone oil.
2-Phenyl-3-(thiazol-2-yl)-2,3,5,6-tetrahydro-4H-1,3-thiazin-4-one, 1: A two-necked 25 ml round-bottom flask was oven-dried, cooled under N2, and charged with a stir bar. 2-Aminothiazole (0.6005 g, 6.00 mmol) and benzaldehyde (0.6369 g, 6.00 mmol) were added. 2-Methyltetrahydrofuran (2.3 ml) was added and the solution was stirred for five minutes. 3-Mercaptopropionic acid (0.6379 g, 6.00 mmol) was added followed by pyridine (2.9 ml, 36 mmol). Finally, 2,4,6-tripropyl-1,3,5,2,4,6-trioxatriphosphorinane-2,4,6-trioxide (T3P) in 2-methyltetrahydrofuran (50 weight percent; 11 ml, 18 mmol) was added. The reaction was stirred at room temperature and followed by TLC, then poured into a separatory funnel with dichloromethane (20 ml). The mixture was washed with water (10 ml). The aqueous was then extracted twice with dichloromethane (10 ml each). The organics were combined and washed with saturated sodium bicarbonate (10 ml) and then saturated sodium chloride (10 ml). The organic extract was dried over sodium sulfate and concentrated under vacuum to give a crude mixture. After chromatography on 30 g silica gel with mixtures of ethyl acetate and hexanes (gradient from 30% ethyl acetate to 70%), recrystallization from methanol solution gave an off-white solid (0.1186 g, 7% yield). m.p.: 426–427 K. Colorless blocks of 1 for crystallography were grown by slow evaporation from methanol solution. 1H NMR (d5-pyridine) δ 7.65 (s, 1H), 7.47 (d, J = 3.7 Hz, 1H), 7.39 (d, J = 7.8 Hz, 2H), 7.26 (t, J = 7.6 Hz, 2H), 7.21 (d, J = 7.2 Hz, 1H), 7.12 (d, J = 3.7 Hz, 1H), 3.16–2.93 (m, 2H), 2.83–2.73 (m, 1H), 2.65–2.55 (m, 1H). 13C NMR (d5-pyridine) δ 168.5, 158.4, 140.1, 137.4, 128.7, 127.8, 126.4, 115.9, 61.7, 34.4, 20.8. HRMS (m/z): [M + H+] of 277.0465 is consistent with calculated [M + H]+ of 277.0464. IR (neat, cm−1): 1647 (C=O).
2-(Furan-2-yl)-3-phenyl-2,3,5,6-tetrahydro-4H-1,3-thiazin-4-one, 2: A two-necked 25 ml round-bottom flask was oven-dried, cooled under N2, and charged with a stir bar. Aniline (0.5585 g, 6.00 mmol) and furfural (0.5764 g, 6.00 mmol) were added. 2-Methyltetrahydrofuran (2.3 ml) was added and the solution was stirred for five minutes. Pyridine (2.9 ml, 36 mmol) and 2,4,6-tripropyl-1,3,5,2,4,6-trioxatriphosphorinane-2,4,6-trioxide (T3P) in 2-methyltetrahydrofuran (50 weight percent; 11 ml, 18 mmol) were added. Lastly, 3-mercaptopropionic acid (0.52 ml, 6.00 mmol) was added dropwise. The reaction was stirred at room temperature and followed by TLC, then poured into a separatory funnel with ethyl acetate (20 ml). The mixture was washed with water (10 ml). The aqueous layer was then extracted twice with ethyl acetate (10 ml each). The organics were combined and washed with saturated sodium bicarbonate (10 ml) and then saturated sodium chloride (10 ml). The organic extract was dried over sodium sulfate and concentrated under vacuum to give a crude mixture. After chromatography on 30 g silica gel with mixtures of ethyl acetate and hexanes (gradient from 30% ethyl acetate to 70%), recrystallization from ethanol gave a light orange solid (0.538 g, 35% yield). m.p.: 380.1–380.9 K (decomposition). Yellow blocks of 2 were grown by slow evaporation from ethanol solution. 1H NMR (d5-pyridine) δ 7.43 (d, J = 8.2 Hz, 2H), 7.30 (t, J = 7.9 Hz, 2H), 7.18 (d, J = 14.9 Hz, 2H), 6.49 (d, J = 3.4 Hz, 1H), 6.38 (dd, J = 3.3, 1.8 Hz, 1H), 6.32 (s, 1H), 3.23–3.13 (m, 1H), 3.07–2.92 (m, 2H), 2.88–2.79 (m, 1H). 13C NMR (d5-pyridine) δ 168.7, 152.1, 143.2, 143.1, 129.1, 127.6, 127.2, 110.8, 109.1, 59.7, 34.7, 23.3. HRMS (m/z): [M + H+] of 260.0737 is consistent with calculated [M + H]+ of 260.0739. IR (neat, cm−1): 1623 (C=O).
6. Refinement
Crystal data, data collection and structure details are summarized in Table 3
. The H atoms were placed geometrically and allowed to ride on their parent C atoms during refinement, with C—H distances of 0.95 Å (aromatic), 0.97 Å (methylene) and 1.0 Å (methyne) and with Uiso(H) = 1.2Ueq (aromatic or methylene C) or 1.5Ueq (methyl C).
|
Supporting information
contains datablocks 1, 2. DOI: https://doi.org/10.1107/S2056989025009193/hb8168sup1.cif
Structure factors: contains datablock 1. DOI: https://doi.org/10.1107/S2056989025009193/hb81681sup2.hkl
Structure factors: contains datablock 2. DOI: https://doi.org/10.1107/S2056989025009193/hb81682sup3.hkl
Supporting information file. DOI: https://doi.org/10.1107/S2056989025009193/hb81681sup4.mol
Supporting information file. DOI: https://doi.org/10.1107/S2056989025009193/hb81682sup5.mol
Supporting information file. DOI: https://doi.org/10.1107/S2056989025009193/hb81681sup6.cml
Supporting information file. DOI: https://doi.org/10.1107/S2056989025009193/hb81682sup7.cml
| C13H12N2OS2 | Dx = 1.441 Mg m−3 |
| Mr = 276.37 | Cu Kα radiation, λ = 1.54184 Å |
| Orthorhombic, P212121 | Cell parameters from 8550 reflections |
| a = 9.71506 (15) Å | θ = 3.4–73.4° |
| b = 10.04091 (13) Å | µ = 3.69 mm−1 |
| c = 13.06169 (18) Å | T = 173 K |
| V = 1274.14 (3) Å3 | Block, colorless |
| Z = 4 | 0.15 × 0.10 × 0.05 mm |
| F(000) = 576 |
| ROD, SynergyCustom system, HyPix-Arc 150 diffractometer | 2577 independent reflections |
| Radiation source: Rotating-anode X-ray tube, Rigaku (Cu) X-ray Source | 2456 reflections with I > 2σ(I) |
| Mirror monochromator | Rint = 0.037 |
| Detector resolution: 10.0000 pixels mm-1 | θmax = 76.5°, θmin = 5.6° |
| ω scans | h = −10→12 |
| Absorption correction: multi-scan (CrysAlisPro; Rigaku OD, 2025) | k = −12→12 |
| Tmin = 0.820, Tmax = 1.000 | l = −16→16 |
| 15582 measured reflections |
| Refinement on F2 | H-atom parameters constrained |
| Least-squares matrix: full | w = 1/[σ2(Fo2) + (0.0356P)2 + 0.1897P] where P = (Fo2 + 2Fc2)/3 |
| R[F2 > 2σ(F2)] = 0.028 | (Δ/σ)max < 0.001 |
| wR(F2) = 0.073 | Δρmax = 0.14 e Å−3 |
| S = 1.05 | Δρmin = −0.18 e Å−3 |
| 2577 reflections | Extinction correction: SHELXL-2018/3 (Sheldrick 2015b), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
| 164 parameters | Extinction coefficient: 0.0019 (4) |
| 0 restraints | Absolute structure: Flack x determined using 979 quotients [(I+)-(I-)]/[(I+)+(I-)] (Parsons et al., 2013) |
| Hydrogen site location: inferred from neighbouring sites | Absolute structure parameter: 0.013 (9) |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| x | y | z | Uiso*/Ueq | ||
| S1 | 0.89569 (8) | 0.55653 (7) | 0.61560 (5) | 0.0551 (2) | |
| S2 | 0.80954 (8) | 0.91269 (7) | 0.30808 (6) | 0.0584 (2) | |
| O1 | 0.7233 (2) | 0.91808 (17) | 0.49817 (15) | 0.0560 (5) | |
| N1 | 0.8157 (2) | 0.71837 (18) | 0.45942 (14) | 0.0372 (4) | |
| N2 | 0.8863 (2) | 0.6695 (2) | 0.29155 (16) | 0.0492 (5) | |
| C1 | 0.8492 (2) | 0.5775 (2) | 0.48283 (18) | 0.0403 (5) | |
| H1 | 0.932918 | 0.554839 | 0.441811 | 0.048* | |
| C8 | 0.7369 (3) | 0.4831 (2) | 0.44846 (17) | 0.0394 (5) | |
| C2 | 0.7542 (2) | 0.8056 (2) | 0.52664 (19) | 0.0410 (5) | |
| C9 | 0.6083 (3) | 0.5254 (3) | 0.4168 (2) | 0.0533 (7) | |
| H9 | 0.586998 | 0.617694 | 0.417852 | 0.064* | |
| C5 | 0.8384 (2) | 0.7550 (2) | 0.35675 (18) | 0.0381 (5) | |
| C6 | 0.9008 (3) | 0.7284 (3) | 0.1967 (2) | 0.0548 (7) | |
| H6 | 0.933586 | 0.680501 | 0.138953 | 0.066* | |
| C13 | 0.7641 (4) | 0.3466 (3) | 0.4476 (2) | 0.0536 (7) | |
| H13 | 0.851329 | 0.314590 | 0.469296 | 0.064* | |
| C4 | 0.7364 (3) | 0.6209 (3) | 0.6645 (2) | 0.0511 (7) | |
| H4A | 0.657947 | 0.571637 | 0.634444 | 0.061* | |
| H4B | 0.733136 | 0.610383 | 0.739804 | 0.061* | |
| C3 | 0.7273 (3) | 0.7666 (3) | 0.6364 (2) | 0.0488 (6) | |
| H3A | 0.793298 | 0.815724 | 0.680090 | 0.059* | |
| H3B | 0.633938 | 0.798117 | 0.654775 | 0.059* | |
| C12 | 0.6630 (5) | 0.2569 (3) | 0.4149 (2) | 0.0687 (10) | |
| H12 | 0.681842 | 0.164056 | 0.415077 | 0.082* | |
| C7 | 0.8660 (3) | 0.8566 (3) | 0.1911 (2) | 0.0600 (8) | |
| H7 | 0.871548 | 0.909530 | 0.130911 | 0.072* | |
| C10 | 0.5096 (3) | 0.4347 (3) | 0.3836 (3) | 0.0681 (9) | |
| H10 | 0.422186 | 0.465784 | 0.361365 | 0.082* | |
| C11 | 0.5374 (4) | 0.3017 (3) | 0.3825 (3) | 0.0682 (9) | |
| H11 | 0.469717 | 0.240301 | 0.359493 | 0.082* |
| U11 | U22 | U33 | U12 | U13 | U23 | |
| S1 | 0.0709 (4) | 0.0553 (4) | 0.0391 (3) | 0.0174 (3) | −0.0116 (3) | 0.0017 (3) |
| S2 | 0.0820 (5) | 0.0416 (4) | 0.0515 (4) | 0.0087 (3) | 0.0069 (4) | 0.0116 (3) |
| O1 | 0.0800 (13) | 0.0353 (9) | 0.0527 (10) | 0.0115 (9) | 0.0006 (9) | −0.0027 (8) |
| N1 | 0.0463 (10) | 0.0299 (9) | 0.0354 (10) | 0.0011 (8) | 0.0000 (9) | −0.0002 (8) |
| N2 | 0.0680 (14) | 0.0432 (12) | 0.0364 (11) | −0.0006 (11) | 0.0043 (10) | −0.0001 (9) |
| C1 | 0.0505 (13) | 0.0361 (12) | 0.0343 (11) | 0.0096 (10) | 0.0023 (9) | 0.0018 (10) |
| C8 | 0.0581 (14) | 0.0317 (11) | 0.0284 (10) | 0.0009 (10) | 0.0081 (10) | −0.0006 (9) |
| C2 | 0.0458 (12) | 0.0363 (12) | 0.0409 (12) | 0.0014 (10) | −0.0022 (10) | −0.0055 (10) |
| C9 | 0.0532 (15) | 0.0405 (13) | 0.0660 (18) | −0.0014 (12) | 0.0024 (13) | −0.0090 (12) |
| C5 | 0.0424 (11) | 0.0350 (11) | 0.0369 (12) | −0.0034 (9) | −0.0027 (9) | 0.0022 (9) |
| C6 | 0.0694 (17) | 0.0591 (17) | 0.0359 (13) | −0.0055 (14) | 0.0043 (13) | 0.0028 (12) |
| C13 | 0.088 (2) | 0.0378 (13) | 0.0352 (13) | 0.0093 (13) | 0.0069 (13) | 0.0027 (10) |
| C4 | 0.0691 (17) | 0.0500 (15) | 0.0341 (12) | −0.0018 (13) | 0.0029 (12) | 0.0007 (11) |
| C3 | 0.0583 (15) | 0.0479 (14) | 0.0401 (13) | 0.0051 (12) | 0.0069 (11) | −0.0044 (11) |
| C12 | 0.131 (3) | 0.0312 (14) | 0.0434 (15) | −0.0125 (17) | 0.0188 (18) | −0.0030 (11) |
| C7 | 0.0734 (19) | 0.0614 (18) | 0.0452 (15) | −0.0007 (14) | 0.0053 (14) | 0.0158 (14) |
| C10 | 0.0595 (17) | 0.0628 (19) | 0.082 (2) | −0.0120 (15) | 0.0055 (16) | −0.0157 (19) |
| C11 | 0.089 (2) | 0.0566 (18) | 0.0594 (18) | −0.0269 (17) | 0.0190 (18) | −0.0084 (17) |
| S1—C1 | 1.804 (2) | C9—C10 | 1.392 (4) |
| S1—C4 | 1.795 (3) | C6—H6 | 0.9500 |
| S2—C5 | 1.730 (2) | C6—C7 | 1.333 (4) |
| S2—C7 | 1.718 (3) | C13—H13 | 0.9500 |
| O1—C2 | 1.226 (3) | C13—C12 | 1.400 (5) |
| N1—C1 | 1.484 (3) | C4—H4A | 0.9900 |
| N1—C2 | 1.377 (3) | C4—H4B | 0.9900 |
| N1—C5 | 1.408 (3) | C4—C3 | 1.510 (4) |
| N2—C5 | 1.295 (3) | C3—H3A | 0.9900 |
| N2—C6 | 1.380 (3) | C3—H3B | 0.9900 |
| C1—H1 | 1.0000 | C12—H12 | 0.9500 |
| C1—C8 | 1.513 (3) | C12—C11 | 1.368 (5) |
| C8—C9 | 1.383 (4) | C7—H7 | 0.9500 |
| C8—C13 | 1.395 (3) | C10—H10 | 0.9500 |
| C2—C3 | 1.510 (4) | C10—C11 | 1.363 (5) |
| C9—H9 | 0.9500 | C11—H11 | 0.9500 |
| C4—S1—C1 | 94.83 (12) | C8—C13—H13 | 119.9 |
| C7—S2—C5 | 88.58 (13) | C8—C13—C12 | 120.1 (3) |
| C2—N1—C1 | 124.80 (19) | C12—C13—H13 | 119.9 |
| C2—N1—C5 | 120.63 (19) | S1—C4—H4A | 110.0 |
| C5—N1—C1 | 114.25 (18) | S1—C4—H4B | 110.0 |
| C5—N2—C6 | 110.1 (2) | H4A—C4—H4B | 108.4 |
| S1—C1—H1 | 106.6 | C3—C4—S1 | 108.26 (19) |
| N1—C1—S1 | 111.35 (16) | C3—C4—H4A | 110.0 |
| N1—C1—H1 | 106.6 | C3—C4—H4B | 110.0 |
| N1—C1—C8 | 112.22 (19) | C2—C3—C4 | 118.2 (2) |
| C8—C1—S1 | 113.11 (16) | C2—C3—H3A | 107.8 |
| C8—C1—H1 | 106.6 | C2—C3—H3B | 107.8 |
| C9—C8—C1 | 123.2 (2) | C4—C3—H3A | 107.8 |
| C9—C8—C13 | 118.0 (3) | C4—C3—H3B | 107.8 |
| C13—C8—C1 | 118.8 (3) | H3A—C3—H3B | 107.1 |
| O1—C2—N1 | 119.9 (2) | C13—C12—H12 | 119.7 |
| O1—C2—C3 | 119.0 (2) | C11—C12—C13 | 120.6 (3) |
| N1—C2—C3 | 121.0 (2) | C11—C12—H12 | 119.7 |
| C8—C9—H9 | 119.5 | S2—C7—H7 | 124.8 |
| C8—C9—C10 | 121.0 (3) | C6—C7—S2 | 110.4 (2) |
| C10—C9—H9 | 119.5 | C6—C7—H7 | 124.8 |
| N1—C5—S2 | 124.30 (17) | C9—C10—H10 | 119.7 |
| N2—C5—S2 | 115.03 (17) | C11—C10—C9 | 120.5 (3) |
| N2—C5—N1 | 120.7 (2) | C11—C10—H10 | 119.7 |
| N2—C6—H6 | 122.0 | C12—C11—H11 | 120.1 |
| C7—C6—N2 | 116.0 (3) | C10—C11—C12 | 119.7 (3) |
| C7—C6—H6 | 122.0 | C10—C11—H11 | 120.1 |
| S1—C1—C8—C9 | 115.7 (2) | C2—N1—C5—S2 | 6.7 (3) |
| S1—C1—C8—C13 | −64.8 (3) | C2—N1—C5—N2 | −174.5 (2) |
| S1—C4—C3—C2 | 49.7 (3) | C9—C8—C13—C12 | 0.4 (4) |
| O1—C2—C3—C4 | 166.8 (3) | C9—C10—C11—C12 | 0.2 (5) |
| N1—C1—C8—C9 | −11.3 (3) | C5—S2—C7—C6 | 0.1 (2) |
| N1—C1—C8—C13 | 168.2 (2) | C5—N1—C1—S1 | 153.07 (17) |
| N1—C2—C3—C4 | −14.8 (4) | C5—N1—C1—C8 | −79.0 (2) |
| N2—C6—C7—S2 | −0.5 (4) | C5—N1—C2—O1 | −2.7 (4) |
| C1—S1—C4—C3 | −65.9 (2) | C5—N1—C2—C3 | 179.0 (2) |
| C1—N1—C2—O1 | −175.7 (2) | C5—N2—C6—C7 | 0.8 (4) |
| C1—N1—C2—C3 | 5.9 (4) | C6—N2—C5—S2 | −0.7 (3) |
| C1—N1—C5—S2 | −179.52 (17) | C6—N2—C5—N1 | −179.5 (2) |
| C1—N1—C5—N2 | −0.8 (3) | C13—C8—C9—C10 | −1.0 (4) |
| C1—C8—C9—C10 | 178.4 (3) | C13—C12—C11—C10 | −0.9 (5) |
| C1—C8—C13—C12 | −179.1 (2) | C4—S1—C1—N1 | 58.12 (18) |
| C8—C9—C10—C11 | 0.7 (5) | C4—S1—C1—C8 | −69.34 (18) |
| C8—C13—C12—C11 | 0.6 (4) | C7—S2—C5—N1 | 179.1 (2) |
| C2—N1—C1—S1 | −33.5 (3) | C7—S2—C5—N2 | 0.3 (2) |
| C2—N1—C1—C8 | 94.5 (3) |
| D—H···A | D—H | H···A | D···A | D—H···A |
| C3—H3B···N2i | 0.99 | 2.53 | 3.503 (4) | 169 |
| C7—H7···O1ii | 0.95 | 2.62 | 3.495 (3) | 154 |
| Symmetry codes: (i) x−1/2, −y+3/2, −z+1; (ii) −x+3/2, −y+2, z−1/2. |
| C14H13NO2S | F(000) = 544 |
| Mr = 259.31 | Dx = 1.391 Mg m−3 |
| Monoclinic, P21/c | Cu Kα radiation, λ = 1.54184 Å |
| a = 14.0188 (2) Å | Cell parameters from 5692 reflections |
| b = 8.0422 (1) Å | θ = 3.2–76.2° |
| c = 11.3223 (2) Å | µ = 2.27 mm−1 |
| β = 104.066 (1)° | T = 173 K |
| V = 1238.22 (3) Å3 | Block, yellow |
| Z = 4 | 0.19 × 0.18 × 0.09 mm |
| ROD, SynergyCustom system, HyPix-Arc 150 diffractometer | 2322 reflections with I > 2σ(I) |
| Detector resolution: 10.0000 pixels mm-1 | Rint = 0.021 |
| ω scans | θmax = 76.3°, θmin = 3.3° |
| Absorption correction: multi-scan (CrysAlisPro; Rigaku OD, 2025) | h = −17→15 |
| Tmin = 0.813, Tmax = 1.000 | k = −9→9 |
| 7838 measured reflections | l = −12→13 |
| 2435 independent reflections |
| Refinement on F2 | Hydrogen site location: inferred from neighbouring sites |
| Least-squares matrix: full | H-atom parameters constrained |
| R[F2 > 2σ(F2)] = 0.029 | w = 1/[σ2(Fo2) + (0.0403P)2 + 0.4195P] where P = (Fo2 + 2Fc2)/3 |
| wR(F2) = 0.080 | (Δ/σ)max < 0.001 |
| S = 1.08 | Δρmax = 0.28 e Å−3 |
| 2435 reflections | Δρmin = −0.30 e Å−3 |
| 164 parameters | Extinction correction: SHELXL-2018/3 (Sheldrick 2015b), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
| 0 restraints | Extinction coefficient: 0.0077 (5) |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| x | y | z | Uiso*/Ueq | ||
| S1 | 0.07806 (2) | 0.43110 (4) | 0.36542 (3) | 0.02744 (13) | |
| O2 | 0.23770 (7) | 0.25789 (11) | 0.10605 (8) | 0.0256 (2) | |
| O1 | 0.21764 (7) | 0.77273 (11) | 0.44109 (8) | 0.0254 (2) | |
| N1 | 0.24650 (7) | 0.38603 (13) | 0.28567 (9) | 0.0190 (2) | |
| C11 | 0.21704 (8) | 0.66614 (15) | 0.34668 (10) | 0.0194 (3) | |
| C5 | 0.35291 (8) | 0.37345 (15) | 0.31819 (11) | 0.0202 (3) | |
| C4 | 0.19546 (9) | 0.32966 (15) | 0.17485 (11) | 0.0200 (3) | |
| C1 | 0.20443 (8) | 0.48549 (15) | 0.37027 (10) | 0.0196 (3) | |
| H1 | 0.244178 | 0.461383 | 0.454540 | 0.024* | |
| C10 | 0.39909 (9) | 0.29220 (16) | 0.42481 (11) | 0.0240 (3) | |
| H10 | 0.361323 | 0.242939 | 0.474755 | 0.029* | |
| C12 | 0.22949 (10) | 0.75125 (16) | 0.24929 (12) | 0.0272 (3) | |
| H12 | 0.231244 | 0.706306 | 0.172252 | 0.033* | |
| C6 | 0.40772 (9) | 0.44727 (16) | 0.24559 (12) | 0.0254 (3) | |
| H6 | 0.375659 | 0.503820 | 0.173134 | 0.030* | |
| C14 | 0.23214 (10) | 0.92929 (16) | 0.39920 (13) | 0.0288 (3) | |
| H14 | 0.236273 | 1.028377 | 0.445845 | 0.035* | |
| C3 | 0.08435 (9) | 0.34646 (18) | 0.13502 (12) | 0.0280 (3) | |
| H3A | 0.067243 | 0.381193 | 0.048541 | 0.034* | |
| H3B | 0.055757 | 0.234554 | 0.138570 | 0.034* | |
| C9 | 0.50141 (10) | 0.28352 (17) | 0.45798 (12) | 0.0293 (3) | |
| H9 | 0.533662 | 0.227828 | 0.530735 | 0.035* | |
| C8 | 0.55618 (9) | 0.35590 (18) | 0.38510 (13) | 0.0310 (3) | |
| H8 | 0.625913 | 0.349154 | 0.407707 | 0.037* | |
| C7 | 0.50956 (10) | 0.43809 (18) | 0.27934 (13) | 0.0305 (3) | |
| H7 | 0.547376 | 0.488261 | 0.229822 | 0.037* | |
| C2 | 0.03348 (9) | 0.46475 (18) | 0.20431 (12) | 0.0297 (3) | |
| H2A | −0.038455 | 0.446094 | 0.180119 | 0.036* | |
| H2B | 0.046518 | 0.581040 | 0.184200 | 0.036* | |
| C13 | 0.23958 (10) | 0.92243 (16) | 0.28411 (14) | 0.0299 (3) | |
| H13 | 0.249607 | 1.013374 | 0.234946 | 0.036* |
| U11 | U22 | U33 | U12 | U13 | U23 | |
| S1 | 0.02374 (18) | 0.0304 (2) | 0.0316 (2) | −0.00259 (12) | 0.01330 (13) | 0.00038 (12) |
| O2 | 0.0287 (5) | 0.0262 (5) | 0.0225 (5) | 0.0000 (4) | 0.0073 (3) | −0.0041 (4) |
| O1 | 0.0306 (5) | 0.0235 (5) | 0.0217 (5) | −0.0001 (4) | 0.0056 (3) | −0.0048 (3) |
| N1 | 0.0185 (5) | 0.0189 (5) | 0.0200 (5) | 0.0004 (4) | 0.0053 (4) | −0.0012 (4) |
| C11 | 0.0191 (5) | 0.0204 (6) | 0.0188 (6) | 0.0008 (4) | 0.0045 (4) | −0.0031 (4) |
| C5 | 0.0195 (6) | 0.0183 (6) | 0.0223 (6) | 0.0006 (4) | 0.0042 (4) | −0.0036 (5) |
| C4 | 0.0233 (6) | 0.0162 (5) | 0.0200 (6) | −0.0008 (4) | 0.0047 (5) | 0.0027 (4) |
| C1 | 0.0205 (5) | 0.0206 (6) | 0.0186 (6) | 0.0005 (5) | 0.0066 (4) | 0.0004 (5) |
| C10 | 0.0254 (6) | 0.0225 (6) | 0.0238 (6) | 0.0012 (5) | 0.0053 (5) | 0.0000 (5) |
| C12 | 0.0364 (7) | 0.0220 (6) | 0.0263 (7) | 0.0014 (5) | 0.0140 (5) | 0.0011 (5) |
| C6 | 0.0243 (6) | 0.0275 (7) | 0.0245 (6) | −0.0001 (5) | 0.0063 (5) | 0.0015 (5) |
| C14 | 0.0271 (7) | 0.0198 (6) | 0.0389 (8) | −0.0013 (5) | 0.0068 (6) | −0.0056 (5) |
| C3 | 0.0218 (6) | 0.0325 (7) | 0.0272 (7) | −0.0019 (5) | 0.0013 (5) | −0.0023 (5) |
| C9 | 0.0279 (7) | 0.0290 (7) | 0.0273 (7) | 0.0057 (5) | −0.0004 (5) | −0.0023 (5) |
| C8 | 0.0193 (6) | 0.0355 (8) | 0.0363 (7) | 0.0025 (5) | 0.0031 (5) | −0.0088 (6) |
| C7 | 0.0237 (6) | 0.0367 (8) | 0.0332 (7) | −0.0033 (5) | 0.0110 (5) | −0.0034 (6) |
| C2 | 0.0189 (6) | 0.0346 (7) | 0.0335 (7) | 0.0017 (5) | 0.0023 (5) | 0.0002 (6) |
| C13 | 0.0314 (7) | 0.0198 (6) | 0.0415 (8) | 0.0014 (5) | 0.0148 (6) | 0.0041 (5) |
| S1—C1 | 1.8125 (12) | C12—C13 | 1.4295 (18) |
| S1—C2 | 1.7992 (14) | C6—H6 | 0.9500 |
| O2—C4 | 1.2308 (15) | C6—C7 | 1.3874 (18) |
| O1—C11 | 1.3687 (14) | C14—H14 | 0.9500 |
| O1—C14 | 1.3779 (16) | C14—C13 | 1.333 (2) |
| N1—C5 | 1.4505 (15) | C3—H3A | 0.9900 |
| N1—C4 | 1.3621 (15) | C3—H3B | 0.9900 |
| N1—C1 | 1.4765 (15) | C3—C2 | 1.5169 (19) |
| C11—C1 | 1.4954 (17) | C9—H9 | 0.9500 |
| C11—C12 | 1.3448 (18) | C9—C8 | 1.385 (2) |
| C5—C10 | 1.3870 (17) | C8—H8 | 0.9500 |
| C5—C6 | 1.3876 (18) | C8—C7 | 1.385 (2) |
| C4—C3 | 1.5188 (16) | C7—H7 | 0.9500 |
| C1—H1 | 1.0000 | C2—H2A | 0.9900 |
| C10—H10 | 0.9500 | C2—H2B | 0.9900 |
| C10—C9 | 1.3935 (18) | C13—H13 | 0.9500 |
| C12—H12 | 0.9500 | ||
| C2—S1—C1 | 95.20 (6) | C7—C6—H6 | 120.2 |
| C11—O1—C14 | 106.07 (10) | O1—C14—H14 | 124.7 |
| C5—N1—C1 | 114.93 (9) | C13—C14—O1 | 110.60 (11) |
| C4—N1—C5 | 119.22 (10) | C13—C14—H14 | 124.7 |
| C4—N1—C1 | 125.08 (10) | C4—C3—H3A | 107.7 |
| O1—C11—C1 | 116.58 (10) | C4—C3—H3B | 107.7 |
| C12—C11—O1 | 110.14 (11) | H3A—C3—H3B | 107.1 |
| C12—C11—C1 | 133.28 (11) | C2—C3—C4 | 118.65 (11) |
| C10—C5—N1 | 119.18 (11) | C2—C3—H3A | 107.7 |
| C10—C5—C6 | 120.58 (11) | C2—C3—H3B | 107.7 |
| C6—C5—N1 | 120.21 (11) | C10—C9—H9 | 119.9 |
| O2—C4—N1 | 120.88 (11) | C8—C9—C10 | 120.13 (12) |
| O2—C4—C3 | 118.05 (11) | C8—C9—H9 | 119.9 |
| N1—C4—C3 | 121.01 (11) | C9—C8—H8 | 119.9 |
| S1—C1—H1 | 107.2 | C9—C8—C7 | 120.17 (12) |
| N1—C1—S1 | 113.03 (8) | C7—C8—H8 | 119.9 |
| N1—C1—C11 | 109.10 (9) | C6—C7—H7 | 120.0 |
| N1—C1—H1 | 107.2 | C8—C7—C6 | 120.09 (13) |
| C11—C1—S1 | 112.71 (8) | C8—C7—H7 | 120.0 |
| C11—C1—H1 | 107.2 | S1—C2—H2A | 109.7 |
| C5—C10—H10 | 120.3 | S1—C2—H2B | 109.7 |
| C5—C10—C9 | 119.36 (12) | C3—C2—S1 | 109.81 (9) |
| C9—C10—H10 | 120.3 | C3—C2—H2A | 109.7 |
| C11—C12—H12 | 126.6 | C3—C2—H2B | 109.7 |
| C11—C12—C13 | 106.73 (12) | H2A—C2—H2B | 108.2 |
| C13—C12—H12 | 126.6 | C12—C13—H13 | 126.8 |
| C5—C6—H6 | 120.2 | C14—C13—C12 | 106.46 (12) |
| C5—C6—C7 | 119.67 (12) | C14—C13—H13 | 126.8 |
| O2—C4—C3—C2 | −167.11 (12) | C4—N1—C1—C11 | −92.17 (13) |
| O1—C11—C1—S1 | 77.57 (11) | C4—C3—C2—S1 | −47.73 (15) |
| O1—C11—C1—N1 | −156.00 (9) | C1—S1—C2—C3 | 61.81 (10) |
| O1—C11—C12—C13 | 0.57 (15) | C1—N1—C5—C10 | 64.62 (14) |
| O1—C14—C13—C12 | −0.11 (16) | C1—N1—C5—C6 | −113.03 (12) |
| N1—C5—C10—C9 | −178.37 (11) | C1—N1—C4—O2 | 174.61 (11) |
| N1—C5—C6—C7 | 178.32 (11) | C1—N1—C4—C3 | −8.21 (17) |
| N1—C4—C3—C2 | 15.63 (18) | C1—C11—C12—C13 | −178.65 (13) |
| C11—O1—C14—C13 | 0.45 (14) | C10—C5—C6—C7 | 0.71 (19) |
| C11—C12—C13—C14 | −0.28 (16) | C10—C9—C8—C7 | 0.4 (2) |
| C5—N1—C4—O2 | 5.23 (17) | C12—C11—C1—S1 | −103.25 (15) |
| C5—N1—C4—C3 | −177.59 (11) | C12—C11—C1—N1 | 23.17 (18) |
| C5—N1—C1—S1 | −156.14 (8) | C6—C5—C10—C9 | −0.74 (19) |
| C5—N1—C1—C11 | 77.62 (12) | C14—O1—C11—C1 | 178.73 (10) |
| C5—C10—C9—C8 | 0.2 (2) | C14—O1—C11—C12 | −0.63 (13) |
| C5—C6—C7—C8 | −0.1 (2) | C9—C8—C7—C6 | −0.4 (2) |
| C4—N1—C5—C10 | −124.95 (12) | C2—S1—C1—N1 | −55.69 (9) |
| C4—N1—C5—C6 | 57.40 (16) | C2—S1—C1—C11 | 68.60 (9) |
| C4—N1—C1—S1 | 34.08 (14) |
| D—H···A | D—H | H···A | D···A | D—H···A |
| C10—H10···O2i | 0.95 | 2.54 | 3.4276 (16) | 155 |
| C12—H12···O1ii | 0.95 | 2.58 | 3.4583 (16) | 153 |
| C14—H14···O2iii | 0.95 | 2.50 | 3.4252 (16) | 166 |
| C13—H13···O2iv | 0.95 | 2.43 | 3.3641 (16) | 168 |
| Symmetry codes: (i) x, −y+1/2, z+1/2; (ii) x, −y+3/2, z−1/2; (iii) x, −y+3/2, z+1/2; (iv) x, y+1, z. |
Acknowledgements
This work was supported by a Major Research Instrumentation Grant from the National Science Foundation to Villanova University (CHE-1827930) for the NIH S10 grants (1S10-OD028589 and 1S10-RR023439) to Dr Neela Yennawar (PSU, University Park) for the X-ray diffractometer; and by a research development grant at Penn State Schuylkill.
Funding information
Funding for this research was provided by: National Science Foundation, Directorate for Mathematical and Physical Sciences (grant No. CHE-1827930 to Villanova University); National Institutes of Health (grant No. 1S10-OD028589 to Neela Yennawar; grant No. 1S10-RR023439 to Neela Yennawar); Penn State Schuylkill (grant to Lee J. Silverberg).
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