research communications
accessand Hirshfeld surface analysis of 3-(2-chloro-6-fluorophenyl)-1,5-bis(thiophen-2-yl)pentane-1,5-dione
aExcellence Center, Baku State University, Z. Khalilov Str. 33, AZ 1148, Baku, Azerbaijan, bDepartment of Physics, Faculty of Sciences, Erciyes University, 38039 Kayseri, Türkiye, cDepartment of Organic Chemistry, Baku State University, Z. Khalilov Str. 33, AZ 1148, Baku, Azerbaijan, and dDepartment of Chemistry, University of Gondar, PO Box 196, Gondar, Ethiopia
*Correspondence e-mail: [email protected]
In the title compound, C19H14ClFO2S2, the molecular conformation is stabilized by intramolecular C—H⋯F, C—H⋯Cl and C—H⋯O hydrogen bonds. In the crystal, the molecules are linked into [010] chains by C—H⋯O hydrogen bonds, creating a C(6) motif and weak C—H⋯F and C—H⋯Cl interactions link these chains into sheets parallel to the (100) plane. The entire –C6H3FCl group is disordered over two positions in a 0.931 (4):0.069 (4) ratio. A Hirshfeld surface analysis indicates that the most important contributions to the crystal packing are from H⋯H (26.7%), C⋯H/H⋯C (17.2%), S⋯H/H⋯S (15.0%) and O⋯H/H⋯O (12.0%) interactions.
Keywords: crystal structure; 2-chloro-6-fluorophenyl ring; thiophene rings; disorder; Hirshfeld surface analysis.
CCDC reference: 2496991
1. Chemical context
Substituted thiophenes are important intermediates in organic synthesis, and are widely used in medicine, industrial chemistry, and materials science (Peng et al., 2024
). Thiophenes with anti-inflammatory, antibacterial, anti-cancer and other biological activities are widely used in the pharmaceutical industry, and a number of thiophene-containing drugs have been approved by the Food and Drug Administration (FDA), such as Cefoxitin, Raloxifene and Suprofen (Schweizer et al., 2011
). In addition, thiophenes exhibit adequate electrical conductivity because of the presence of sulfur atoms. In particular, polythiophenes have found applications in organic light-emitting diodes, organic semiconductors, field effect transistors, etc. (Turkoglu et al., 2019
; Zhang et al., 2015
). Functional properties of thiophenes are strongly dependent on the intermolecular interactions, such as hydrogen and chalcogen bonds (Gurbanov et al., 2020
, 2022
; Mahmudov et al., 2021
, 2023
). The cooperation of –Cl, –F and C=O groups with the thiophen-2-yl synthon in thiophenes can improve the functional properties of the corresponding organic materials (Gurbanov et al., 2023
; Mahmoudi et al., 2017
, 2018
; Velásquez et al., 2019
). Thus, in the current work we have synthesized a new thiophene derivative, 3-(2-chloro-6-fluorophenyl)-1,5-di(thiophen-2-yl)pentane-1,5-dione, which provides multiple intermolecular interactions.
2. Structural commentary
Intramolecular C2—H2A⋯F1, C1—H1⋯Cl1 and C13—H13⋯O1 interactions (Fig. 1
, Table 1
) maintain the molecular conformation of the major disorder component of the title compound, resulting in C(6), C(5) and C(9) motifs (Bernstein et al., 1995
), respectively. The major and minor occupancy benzene rings (C14–C19 and C14A–C19A) of the disordered 2-chloro-6-fluorophenyl group form an angle of 3.3 (5)° with one another. The angles between the planes of the two thiophen-2-yl rings (S1/C4–C7 and S2/C10–C13) and the major occupancy ring (C14–C19) of the disordered 2-chloro-6-fluorophenyl group are 40.9 (1) and 51.6 (1)°, respectively. The dihedral angle between the two thiophen-2-yl rings is 19.3 (1)°. The torsion angles C3—C2—C1—C14, C3—C2—C1—C8, C2—C1—C8—C9, C14—C1—C8—C9, C1—C8—C9—C10 and C8—C9—C10—C13 are 165.2 (2), −70.4 (2), 169.8 (2), −65.8 (3), −81.2 (2), and 0.4 (4)°, respectively. The sum of the angles about C1 is 333.6 (2)° for the major disorder component. All geometric parameters are normal and consistent with those of related compounds listed in the section Database survey.
|
| Figure 1 The title molecule with the atom-labelling scheme and displacement ellipsoids drawn at the 50% probability level. Only the major disorder component is displayed. Intramolecular C—H⋯Cl, C—H⋯F, and C—H⋯O hydrogen bonds are shown as dashed lines. |
3. Supramolecular features and Hirshfeld surface analysis
In the crystal, C—H⋯O hydrogen bonds (Table 1
) link the molecules into chains extending along the [010] direction (Fig. 2
) and weak C—H⋯F and C—H⋯Cl interactions (Table 1
) further link these chains into sheets parallel to the (100) plane (Figs. 1
and 2
in the supporting information). van der Waals interactions between the sheets also contribute to the cohesion of the molecular packing. No π–π or C—H⋯π interactions are found.
| Figure 2 A partial packing diagram showing the unit cell. Dashed lines indicate C—H⋯O hydrogen bonds. Only H atoms involved in the hydrogen bonds and the major disorder component are shown for clarity. |
We carried out a Hirshfeld surface analysis to further investigate the intermolecular interactions using Crystal Explorer 17.5 (Spackman et al., 2021
). The Hirshfeld surface mapped over dnorm is illustrated in Fig. 3
. The red spots on the Hirshfeld surface plot indicate the intermolecular C2—H2B⋯O2, C5—H5⋯Cl1A and C16—H16⋯F1A contacts shown in Table 1
. The overall two-dimensional fingerprint plot is shown in Fig. 4
a. The Hirshfeld surface analysis reveals that H⋯H (26.7%) and C⋯H/H⋯C (17.2%) contacts are the main contributors to the crystal packing (Tables 1
and 2
; Fig. 4
b–c), followed by S⋯H/H⋯S (15.0%), O⋯H/H⋯O (12.0%), F⋯H/H⋯F (7.6%) and Cl⋯H/H⋯Cl (6.4%) contacts. The other minor contributions are less than 4.5%. The Hirshfeld surface analysis confirms the importance of H-atom contacts in the crystal (Hathwar et al., 2015
).
| ||||||||||||||||||||||||||||||||
| Figure 3 View of the three-dimensional Hirshfeld surface of the compound plotted over dnorm. |
| Figure 4 The two-dimensional fingerprint plots, showing (a) all interactions, and delineated into (b) H⋯H and (c) C⋯H/H⋯C interactions [de and di represent the distances from a point on the Hirshfeld surface to the nearest atoms outside (external) and inside (internal) the surface, respectively]. |
4. Database survey
A search of the Cambridge Structural Database (CSD, Version 6.00, update of April 2025; Groom et al., 2016
) found that the most closely related structures containing the 4-(2-chloro-6-fluorophenyl)-1,7-di(thiophen-2-yl)heptane-1,7-dione unit are MIGVEE (Butcher et al., 2007
), WEPJOR (Yathirajan et al., 2006
) and XUJRAZ (Sharmoukh et al., 2025
).
The angles between the plane of the benzene ring and those of the two thiophene rings are 89.7 (5) and 63.7 (1)° for MIGVEE, 84.9 (2) and 68.8 (2) ° for WEPJOR, and 75.27 (5) and 83.8 (2)° for XUJRAZ. In MIGVEE, the molecules are linked by C—Br⋯π and C—Cl⋯π interactions and there are no classical hydrogen bonds. In WEPJOR, the molecules form layers parallel to (200) through C—H⋯O hydrogen bonds. C—H⋯π, C—Br⋯π, and C—O⋯π interactions formed between the layers strengthen the molecular packing. In the crystal of XUJRAZ, C—H⋯O hydrogen bonds form chains of molecules extending along the c-axis direction. These are linked by C—H⋯S hydrogen bonds and C—H⋯π interactions into corrugated layers parallel to the bc plane.
5. Synthesis and crystallization
2-Chloro-6-fluorobenzaldehyde (10 mmol) was added into a solution of 1-(thiophen-2-yl)ethan-1-one (20 mmol) in EtOH (60 mL). KOH pellets (25 mmol) were then added to the solution. The solution was stirred at room temperature for 8 h. The off-colourless solid was collected by filtration and washed with EtOH (3 × 10 mL). Recrystallization from CHCl3–MeOH afforded a white crystalline solid of the title compound (yield, 52%). The synthesis is shown in Fig. 5
. Analysis calculated for C19H14ClFO2S2: C, 58.09; H, 3.59. Found: C, 58.05; H, 3.55. 1H NMR (500 MHz, CDCl3): δ (ppm) 7.83 (dd, J = 1.0, 3.8 Hz, 2H, ArH), 7.68 (dd, J = 1.0, 4.9 Hz, 2H, ArH), 7.55–7.52 (m, 2H, ArH), 7.24 (d, J = 8.0 Hz, 1H, ArH), 7.08 (dd, J = 3.9, 4.8 Hz, 2H, ArH), 4.60 (p, J = 7.2 Hz, 1H, CH), 3.51 (dd, J = 7.1, 16.9 Hz, 2H, CH2), 3.39 (dd, J = 7.2, 16.9 Hz, 2H, CH2); 13C{H} NMR (125 MHz, CDCl3): δ (ppm) 198.6, 160.0, 144.1, 136.6, 134.6, 134.4, 133.4, 128.7, 128.4, 124.2, 113.3, 45.0, 36.5.
| | Figure 5 Synthesis of 3-(2-chloro-6-fluorophenyl)-1,5-di(thiophen-2-yl)pentane-1,5-dione. |
6. Refinement
Crystal data, data collection and structure details are summarized in Table 3
. All carbon-bound H atoms were positioned geometrically and refined as riding: C—H = 0.95–1.00 Å with Uiso(H) = 1.2Ueq(C). The –C6H3FCl group (C14–C19/Cl1/F1) atoms and the main group atom it is attached to (C1) were treated as disordered in a ratio of 0.931 (4):0.069 (4) over two positions. Refinement was performed by substituting the majority of the fluorine and chlorine atoms in the disorder with the minor portion's chlorine and fluorine atoms, respectively. The FLAT command was used to ensure that the atoms of the two disorder parts lie in the same plane. In the major and minor parts (C14–C19/Cl1/F1 and C14A–C19A/Cl1A/F1A) of the disorder group, the C—Cl and C—F bonds, as well as the corresponding C–C bond lengths (e.g. C14—C19 and C14A—C19A) of the benzene ring, and the C1—C14 and C1—C14A distances connecting the –C6H3FCl group to the main group, were forced to have the same value using the SADI command. Displacement parameters of similar corresponding atoms were forced to be the same using the EADP command. For the disordered main group atom (C1/C1A), the EXYZ and EADP commands were applied. One reflection (1 0 0), affected by the incident beam-stop was omitted in the final cycles of refinement.
|
Supporting information
CCDC reference: 2496991
contains datablock I. DOI: https://doi.org/10.1107/S2056989025009284/oi2026sup1.cif
Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S2056989025009284/oi2026Isup2.hkl
Views of molecular packing along the [010] and [001] directions. DOI: https://doi.org/10.1107/S2056989025009284/oi2026sup3.pdf
Supporting information file. DOI: https://doi.org/10.1107/S2056989025009284/oi2026Isup4.cml
| C19H14ClFO2S2 | F(000) = 808 |
| Mr = 392.87 | Dx = 1.457 Mg m−3 |
| Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
| a = 16.4479 (14) Å | Cell parameters from 3391 reflections |
| b = 7.6867 (6) Å | θ = 2.7–22.6° |
| c = 15.4738 (12) Å | µ = 0.47 mm−1 |
| β = 113.697 (2)° | T = 150 K |
| V = 1791.4 (3) Å3 | Plate, colourless |
| Z = 4 | 0.28 × 0.21 × 0.11 mm |
| Bruker APEXII CCD diffractometer | 2523 reflections with I > 2σ(I) |
| φ and ω scans | Rint = 0.069 |
| Absorption correction: multi-scan (SADABS; Krause et al., 2015) | θmax = 26.4°, θmin = 2.6° |
| Tmin = 0.868, Tmax = 0.936 | h = −12→20 |
| 24966 measured reflections | k = −9→9 |
| 3678 independent reflections | l = −19→19 |
| Refinement on F2 | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| R[F2 > 2σ(F2)] = 0.043 | Hydrogen site location: inferred from neighbouring sites |
| wR(F2) = 0.101 | H-atom parameters constrained |
| S = 1.02 | w = 1/[σ2(Fo2) + (0.041P)2 + 0.8461P] where P = (Fo2 + 2Fc2)/3 |
| 3678 reflections | (Δ/σ)max < 0.001 |
| 251 parameters | Δρmax = 0.36 e Å−3 |
| 19 restraints | Δρmin = −0.33 e Å−3 |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| x | y | z | Uiso*/Ueq | Occ. (<1) | |
| S1 | 0.48547 (5) | 1.11343 (9) | 0.68846 (5) | 0.0347 (2) | |
| S2 | 0.17955 (5) | 0.15490 (9) | 0.57749 (4) | 0.02808 (18) | |
| O1 | 0.35484 (12) | 0.8198 (2) | 0.63059 (11) | 0.0325 (5) | |
| O2 | 0.20623 (11) | 0.2763 (2) | 0.40727 (11) | 0.0257 (4) | |
| C1 | 0.23408 (15) | 0.7006 (3) | 0.45142 (15) | 0.0185 (5) | 0.931 (4) |
| H1 | 0.208985 | 0.704636 | 0.500503 | 0.022* | 0.931 (4) |
| C1A | 0.23408 (15) | 0.7006 (3) | 0.45142 (15) | 0.0185 (5) | 0.069 (4) |
| H1A | 0.216615 | 0.704850 | 0.506277 | 0.022* | 0.069 (4) |
| C2 | 0.29032 (16) | 0.8652 (3) | 0.46245 (16) | 0.0211 (5) | |
| H2A | 0.324906 | 0.852587 | 0.423181 | 0.025* | |
| H2B | 0.249983 | 0.965811 | 0.437873 | 0.025* | |
| C3 | 0.35410 (16) | 0.9041 (3) | 0.56334 (16) | 0.0222 (6) | |
| C4 | 0.41533 (16) | 1.0496 (3) | 0.57579 (16) | 0.0216 (6) | |
| C5 | 0.53198 (18) | 1.2697 (3) | 0.6448 (2) | 0.0334 (7) | |
| H5 | 0.577736 | 1.345670 | 0.683339 | 0.040* | |
| C6 | 0.49693 (17) | 1.2742 (3) | 0.54950 (19) | 0.0296 (6) | |
| H6 | 0.515453 | 1.352724 | 0.513567 | 0.036* | |
| C7 | 0.42941 (17) | 1.1482 (3) | 0.50947 (18) | 0.0256 (6) | |
| H7 | 0.397187 | 1.133687 | 0.443422 | 0.031* | |
| C8 | 0.29140 (16) | 0.5332 (3) | 0.46852 (16) | 0.0195 (5) | |
| H8A | 0.310864 | 0.518754 | 0.416146 | 0.023* | |
| H8B | 0.345162 | 0.546509 | 0.527707 | 0.023* | |
| C9 | 0.24180 (15) | 0.3726 (3) | 0.47531 (16) | 0.0192 (5) | |
| C10 | 0.23621 (16) | 0.3363 (3) | 0.56578 (16) | 0.0206 (5) | |
| C11 | 0.20209 (19) | 0.2051 (3) | 0.69187 (18) | 0.0319 (7) | |
| H11 | 0.183088 | 0.136201 | 0.731254 | 0.038* | |
| C12 | 0.24999 (19) | 0.3535 (4) | 0.72113 (17) | 0.0328 (7) | |
| H12 | 0.267969 | 0.400652 | 0.782783 | 0.039* | |
| C13 | 0.26995 (18) | 0.4295 (3) | 0.64853 (17) | 0.0300 (6) | |
| H13 | 0.303128 | 0.533825 | 0.656235 | 0.036* | |
| F1 | 0.2498 (2) | 0.7339 (4) | 0.2741 (3) | 0.0361 (9) | 0.931 (4) |
| Cl1 | 0.04217 (6) | 0.63824 (16) | 0.44021 (6) | 0.0390 (3) | 0.931 (4) |
| C14 | 0.15660 (18) | 0.6954 (3) | 0.35533 (18) | 0.0185 (7) | 0.931 (4) |
| C15 | 0.1675 (2) | 0.7152 (5) | 0.2710 (2) | 0.0244 (8) | 0.931 (4) |
| C16 | 0.1007 (2) | 0.7139 (5) | 0.1826 (2) | 0.0326 (8) | 0.931 (4) |
| H16 | 0.112992 | 0.728642 | 0.128086 | 0.039* | 0.931 (4) |
| C17 | 0.0151 (2) | 0.6907 (5) | 0.1749 (2) | 0.0361 (8) | 0.931 (4) |
| H17 | −0.032523 | 0.690595 | 0.114242 | 0.043* | 0.931 (4) |
| C18 | −0.0023 (2) | 0.6679 (4) | 0.2535 (3) | 0.0328 (8) | 0.931 (4) |
| H18 | −0.061441 | 0.650549 | 0.247814 | 0.039* | 0.931 (4) |
| C19 | 0.06845 (18) | 0.6705 (4) | 0.3424 (2) | 0.0230 (7) | 0.931 (4) |
| F1A | 0.068 (3) | 0.647 (5) | 0.466 (2) | 0.0361 (9) | 0.069 (4) |
| Cl1A | 0.2623 (17) | 0.701 (4) | 0.2830 (19) | 0.0390 (3) | 0.069 (4) |
| C14A | 0.1464 (16) | 0.672 (3) | 0.366 (2) | 0.0185 (7) | 0.069 (4) |
| C15A | 0.155 (2) | 0.687 (8) | 0.281 (3) | 0.0244 (8) | 0.069 (4) |
| C16A | 0.078 (3) | 0.687 (7) | 0.200 (3) | 0.0326 (8) | 0.069 (4) |
| H16A | 0.080506 | 0.698995 | 0.140011 | 0.039* | 0.069 (4) |
| C17A | −0.002 (3) | 0.669 (8) | 0.206 (3) | 0.0361 (8) | 0.069 (4) |
| H17A | −0.054819 | 0.663755 | 0.150898 | 0.043* | 0.069 (4) |
| C18A | −0.005 (3) | 0.657 (6) | 0.293 (3) | 0.0328 (8) | 0.069 (4) |
| H18A | −0.061667 | 0.648735 | 0.294035 | 0.039* | 0.069 (4) |
| C19A | 0.068 (2) | 0.658 (6) | 0.380 (2) | 0.0230 (7) | 0.069 (4) |
| U11 | U22 | U33 | U12 | U13 | U23 | |
| S1 | 0.0333 (4) | 0.0364 (4) | 0.0268 (4) | −0.0097 (3) | 0.0041 (3) | −0.0050 (3) |
| S2 | 0.0367 (4) | 0.0245 (4) | 0.0261 (3) | −0.0031 (3) | 0.0158 (3) | 0.0013 (3) |
| O1 | 0.0392 (12) | 0.0314 (11) | 0.0211 (9) | −0.0098 (9) | 0.0061 (9) | 0.0016 (8) |
| O2 | 0.0330 (11) | 0.0240 (10) | 0.0188 (9) | −0.0017 (8) | 0.0091 (8) | −0.0026 (8) |
| C1 | 0.0195 (13) | 0.0200 (13) | 0.0167 (12) | 0.0002 (11) | 0.0080 (11) | 0.0002 (10) |
| C1A | 0.0195 (13) | 0.0200 (13) | 0.0167 (12) | 0.0002 (11) | 0.0080 (11) | 0.0002 (10) |
| C2 | 0.0231 (14) | 0.0188 (13) | 0.0197 (12) | 0.0000 (11) | 0.0069 (11) | 0.0005 (10) |
| C3 | 0.0216 (14) | 0.0219 (13) | 0.0227 (13) | 0.0035 (11) | 0.0085 (11) | 0.0009 (11) |
| C4 | 0.0183 (13) | 0.0193 (13) | 0.0234 (13) | 0.0021 (11) | 0.0044 (11) | −0.0029 (11) |
| C5 | 0.0271 (16) | 0.0265 (15) | 0.0428 (17) | −0.0046 (13) | 0.0102 (14) | −0.0078 (13) |
| C6 | 0.0267 (15) | 0.0207 (14) | 0.0433 (17) | −0.0006 (12) | 0.0160 (14) | −0.0002 (12) |
| C7 | 0.0256 (15) | 0.0238 (14) | 0.0260 (13) | 0.0024 (12) | 0.0090 (12) | −0.0021 (11) |
| C8 | 0.0186 (13) | 0.0226 (13) | 0.0165 (12) | 0.0017 (11) | 0.0063 (11) | 0.0018 (10) |
| C9 | 0.0158 (13) | 0.0193 (13) | 0.0187 (13) | 0.0051 (11) | 0.0030 (11) | 0.0017 (10) |
| C10 | 0.0233 (14) | 0.0171 (13) | 0.0214 (13) | 0.0019 (11) | 0.0090 (11) | 0.0025 (10) |
| C11 | 0.0451 (18) | 0.0285 (16) | 0.0260 (14) | 0.0054 (14) | 0.0184 (14) | 0.0080 (12) |
| C12 | 0.0513 (19) | 0.0312 (16) | 0.0178 (13) | −0.0009 (14) | 0.0157 (13) | 0.0027 (11) |
| C13 | 0.0378 (17) | 0.0260 (15) | 0.0212 (13) | −0.0053 (13) | 0.0066 (13) | −0.0003 (11) |
| F1 | 0.0400 (19) | 0.0373 (17) | 0.0408 (15) | 0.0063 (11) | 0.0263 (13) | 0.0092 (11) |
| Cl1 | 0.0258 (6) | 0.0652 (6) | 0.0289 (5) | −0.0084 (5) | 0.0141 (4) | −0.0055 (5) |
| C14 | 0.0194 (14) | 0.0133 (13) | 0.0198 (14) | 0.0019 (11) | 0.0049 (12) | 0.0009 (10) |
| C15 | 0.0316 (17) | 0.021 (2) | 0.0197 (15) | 0.0010 (14) | 0.0093 (13) | 0.0025 (12) |
| C16 | 0.047 (2) | 0.0335 (19) | 0.0164 (16) | 0.0068 (16) | 0.0118 (14) | 0.0048 (13) |
| C17 | 0.035 (2) | 0.045 (2) | 0.0165 (17) | 0.0075 (16) | −0.0020 (15) | 0.0014 (15) |
| C18 | 0.0251 (16) | 0.0401 (18) | 0.0277 (19) | 0.0020 (14) | 0.0048 (17) | −0.0037 (18) |
| C19 | 0.0254 (16) | 0.0236 (15) | 0.0182 (16) | 0.0024 (12) | 0.0068 (14) | −0.0012 (13) |
| F1A | 0.0400 (19) | 0.0373 (17) | 0.0408 (15) | 0.0063 (11) | 0.0263 (13) | 0.0092 (11) |
| Cl1A | 0.0258 (6) | 0.0652 (6) | 0.0289 (5) | −0.0084 (5) | 0.0141 (4) | −0.0055 (5) |
| C14A | 0.0194 (14) | 0.0133 (13) | 0.0198 (14) | 0.0019 (11) | 0.0049 (12) | 0.0009 (10) |
| C15A | 0.0316 (17) | 0.021 (2) | 0.0197 (15) | 0.0010 (14) | 0.0093 (13) | 0.0025 (12) |
| C16A | 0.047 (2) | 0.0335 (19) | 0.0164 (16) | 0.0068 (16) | 0.0118 (14) | 0.0048 (13) |
| C17A | 0.035 (2) | 0.045 (2) | 0.0165 (17) | 0.0075 (16) | −0.0020 (15) | 0.0014 (15) |
| C18A | 0.0251 (16) | 0.0401 (18) | 0.0277 (19) | 0.0020 (14) | 0.0048 (17) | −0.0037 (18) |
| C19A | 0.0254 (16) | 0.0236 (15) | 0.0182 (16) | 0.0024 (12) | 0.0068 (14) | −0.0012 (13) |
| S1—C5 | 1.703 (3) | C10—C13 | 1.375 (3) |
| S1—C4 | 1.731 (2) | C11—C12 | 1.357 (4) |
| S2—C11 | 1.700 (3) | C11—H11 | 0.9500 |
| S2—C10 | 1.727 (2) | C12—C13 | 1.417 (3) |
| O1—C3 | 1.222 (3) | C12—H12 | 0.9500 |
| O2—C9 | 1.226 (3) | C13—H13 | 0.9500 |
| C1—C14 | 1.521 (3) | F1—C15 | 1.342 (5) |
| C1—C2 | 1.536 (3) | Cl1—C19 | 1.750 (3) |
| C1—C8 | 1.554 (3) | C14—C19 | 1.395 (4) |
| C1—H1 | 1.0000 | C14—C15 | 1.395 (3) |
| C1A—C14A | 1.529 (19) | C15—C16 | 1.368 (4) |
| C1A—C2 | 1.536 (3) | C16—C17 | 1.376 (5) |
| C1A—C8 | 1.554 (3) | C16—H16 | 0.9500 |
| C1A—H1A | 1.0000 | C17—C18 | 1.368 (4) |
| C2—C3 | 1.520 (3) | C17—H17 | 0.9500 |
| C2—H2A | 0.9900 | C18—C19 | 1.401 (4) |
| C2—H2B | 0.9900 | C18—H18 | 0.9500 |
| C3—C4 | 1.465 (3) | F1A—C19A | 1.341 (19) |
| C4—C7 | 1.369 (3) | Cl1A—C15A | 1.75 (2) |
| C5—C6 | 1.350 (4) | C14A—C15A | 1.390 (19) |
| C5—H5 | 0.9500 | C14A—C19A | 1.39 (2) |
| C6—C7 | 1.415 (4) | C15A—C16A | 1.37 (2) |
| C6—H6 | 0.9500 | C16A—C17A | 1.36 (2) |
| C7—H7 | 0.9500 | C16A—H16A | 0.9500 |
| C8—C9 | 1.507 (3) | C17A—C18A | 1.36 (2) |
| C8—H8A | 0.9900 | C17A—H17A | 0.9500 |
| C8—H8B | 0.9900 | C18A—C19A | 1.39 (2) |
| C9—C10 | 1.466 (3) | C18A—H18A | 0.9500 |
| C5—S1—C4 | 91.38 (13) | C13—C10—S2 | 110.85 (18) |
| C11—S2—C10 | 91.43 (12) | C9—C10—S2 | 119.83 (17) |
| C14—C1—C2 | 111.15 (19) | C12—C11—S2 | 113.1 (2) |
| C14—C1—C8 | 110.94 (19) | C12—C11—H11 | 123.4 |
| C2—C1—C8 | 111.47 (19) | S2—C11—H11 | 123.4 |
| C14—C1—H1 | 107.7 | C11—C12—C13 | 111.8 (2) |
| C2—C1—H1 | 107.7 | C11—C12—H12 | 124.1 |
| C8—C1—H1 | 107.7 | C13—C12—H12 | 124.1 |
| C14A—C1A—C2 | 122.0 (10) | C10—C13—C12 | 112.8 (2) |
| C14A—C1A—C8 | 109.1 (9) | C10—C13—H13 | 123.6 |
| C2—C1A—C8 | 111.47 (19) | C12—C13—H13 | 123.6 |
| C14A—C1A—H1A | 104.1 | C19—C14—C15 | 113.4 (2) |
| C2—C1A—H1A | 104.1 | C19—C14—C1 | 123.9 (2) |
| C8—C1A—H1A | 104.1 | C15—C14—C1 | 122.7 (3) |
| C3—C2—C1 | 114.36 (19) | F1—C15—C16 | 115.5 (3) |
| C3—C2—C1A | 114.36 (19) | F1—C15—C14 | 119.0 (3) |
| C3—C2—H2A | 108.7 | C16—C15—C14 | 125.5 (3) |
| C1—C2—H2A | 108.7 | C15—C16—C17 | 118.1 (3) |
| C3—C2—H2B | 108.7 | C15—C16—H16 | 121.0 |
| C1—C2—H2B | 108.7 | C17—C16—H16 | 121.0 |
| H2A—C2—H2B | 107.6 | C18—C17—C16 | 120.8 (3) |
| O1—C3—C4 | 121.5 (2) | C18—C17—H17 | 119.6 |
| O1—C3—C2 | 122.5 (2) | C16—C17—H17 | 119.6 |
| C4—C3—C2 | 116.1 (2) | C17—C18—C19 | 118.9 (3) |
| C7—C4—C3 | 129.7 (2) | C17—C18—H18 | 120.5 |
| C7—C4—S1 | 110.67 (19) | C19—C18—H18 | 120.5 |
| C3—C4—S1 | 119.58 (18) | C14—C19—C18 | 123.2 (3) |
| C6—C5—S1 | 112.9 (2) | C14—C19—Cl1 | 120.0 (2) |
| C6—C5—H5 | 123.6 | C18—C19—Cl1 | 116.8 (2) |
| S1—C5—H5 | 123.6 | C15A—C14A—C19A | 127 (2) |
| C5—C6—C7 | 112.1 (2) | C15A—C14A—C1A | 113 (3) |
| C5—C6—H6 | 124.0 | C19A—C14A—C1A | 119 (3) |
| C7—C6—H6 | 124.0 | C16A—C15A—C14A | 117 (3) |
| C4—C7—C6 | 113.0 (2) | C16A—C15A—Cl1A | 125 (3) |
| C4—C7—H7 | 123.5 | C14A—C15A—Cl1A | 118 (3) |
| C6—C7—H7 | 123.5 | C17A—C16A—C15A | 120 (4) |
| C9—C8—C1 | 112.44 (19) | C17A—C16A—H16A | 120.1 |
| C9—C8—C1A | 112.44 (19) | C15A—C16A—H16A | 120.1 |
| C9—C8—H8A | 109.1 | C18A—C17A—C16A | 120 (5) |
| C1—C8—H8A | 109.1 | C18A—C17A—H17A | 120.2 |
| C9—C8—H8B | 109.1 | C16A—C17A—H17A | 120.2 |
| C1—C8—H8B | 109.1 | C17A—C18A—C19A | 126 (5) |
| H8A—C8—H8B | 107.8 | C17A—C18A—H18A | 116.8 |
| O2—C9—C10 | 120.9 (2) | C19A—C18A—H18A | 116.8 |
| O2—C9—C8 | 121.3 (2) | F1A—C19A—C14A | 122 (3) |
| C10—C9—C8 | 117.8 (2) | F1A—C19A—C18A | 128 (4) |
| C13—C10—C9 | 129.3 (2) | C14A—C19A—C18A | 110 (3) |
| C14—C1—C2—C3 | 165.2 (2) | C11—C12—C13—C10 | 0.2 (4) |
| C8—C1—C2—C3 | −70.4 (2) | C2—C1—C14—C19 | −127.6 (3) |
| C14A—C1A—C2—C3 | 158.3 (16) | C8—C1—C14—C19 | 107.8 (3) |
| C8—C1A—C2—C3 | −70.4 (2) | C2—C1—C14—C15 | 52.4 (3) |
| C1—C2—C3—O1 | −6.0 (3) | C8—C1—C14—C15 | −72.2 (3) |
| C1A—C2—C3—O1 | −6.0 (3) | C19—C14—C15—F1 | −177.7 (3) |
| C1—C2—C3—C4 | 174.0 (2) | C1—C14—C15—F1 | 2.2 (5) |
| C1A—C2—C3—C4 | 174.0 (2) | C19—C14—C15—C16 | 0.9 (5) |
| O1—C3—C4—C7 | 173.8 (3) | C1—C14—C15—C16 | −179.2 (3) |
| C2—C3—C4—C7 | −6.1 (4) | F1—C15—C16—C17 | 178.4 (3) |
| O1—C3—C4—S1 | −4.3 (3) | C14—C15—C16—C17 | −0.2 (6) |
| C2—C3—C4—S1 | 175.73 (17) | C15—C16—C17—C18 | −0.6 (5) |
| C5—S1—C4—C7 | −0.1 (2) | C16—C17—C18—C19 | 0.8 (5) |
| C5—S1—C4—C3 | 178.4 (2) | C15—C14—C19—C18 | −0.7 (4) |
| C4—S1—C5—C6 | −0.3 (2) | C1—C14—C19—C18 | 179.3 (3) |
| S1—C5—C6—C7 | 0.5 (3) | C15—C14—C19—Cl1 | 178.5 (2) |
| C3—C4—C7—C6 | −177.9 (2) | C1—C14—C19—Cl1 | −1.4 (4) |
| S1—C4—C7—C6 | 0.4 (3) | C17—C18—C19—C14 | 0.0 (5) |
| C5—C6—C7—C4 | −0.6 (3) | C17—C18—C19—Cl1 | −179.3 (2) |
| C14—C1—C8—C9 | −65.8 (3) | C2—C1A—C14A—C15A | 55 (3) |
| C2—C1—C8—C9 | 169.78 (19) | C8—C1A—C14A—C15A | −78 (3) |
| C14A—C1A—C8—C9 | −52.7 (15) | C2—C1A—C14A—C19A | −118 (2) |
| C2—C1A—C8—C9 | 169.78 (19) | C8—C1A—C14A—C19A | 110 (2) |
| C1—C8—C9—O2 | 97.9 (3) | C19A—C14A—C15A—C16A | 0 (7) |
| C1A—C8—C9—O2 | 97.9 (3) | C1A—C14A—C15A—C16A | −172 (4) |
| C1—C8—C9—C10 | −81.2 (2) | C19A—C14A—C15A—Cl1A | −179 (3) |
| C1A—C8—C9—C10 | −81.2 (2) | C1A—C14A—C15A—Cl1A | 9 (5) |
| O2—C9—C10—C13 | −178.8 (3) | C14A—C15A—C16A—C17A | −2 (8) |
| C8—C9—C10—C13 | 0.4 (4) | Cl1A—C15A—C16A—C17A | 178 (4) |
| O2—C9—C10—S2 | 0.5 (3) | C15A—C16A—C17A—C18A | 2 (8) |
| C8—C9—C10—S2 | 179.57 (17) | C16A—C17A—C18A—C19A | −2 (9) |
| C11—S2—C10—C13 | −0.3 (2) | C15A—C14A—C19A—F1A | −179 (4) |
| C11—S2—C10—C9 | −179.7 (2) | C1A—C14A—C19A—F1A | −8 (5) |
| C10—S2—C11—C12 | 0.4 (2) | C15A—C14A—C19A—C18A | 0 (6) |
| S2—C11—C12—C13 | −0.4 (3) | C1A—C14A—C19A—C18A | 172 (3) |
| C9—C10—C13—C12 | 179.4 (2) | C17A—C18A—C19A—F1A | 180 (5) |
| S2—C10—C13—C12 | 0.1 (3) | C17A—C18A—C19A—C14A | 0 (7) |
| D—H···A | D—H | H···A | D···A | D—H···A |
| C1—H1···Cl1 | 1.00 | 2.57 | 3.128 (3) | 115 |
| C1—H1···F1A | 1.00 | 2.21 | 2.86 (5) | 122 |
| C2—H2A···Cl1A | 0.99 | 2.31 | 2.91 (3) | 118 |
| C2—H2A···F1 | 0.99 | 2.32 | 2.898 (5) | 116 |
| C2—H2B···O2i | 0.99 | 2.48 | 3.417 (3) | 157 |
| C5—H5···Cl1Aii | 0.95 | 2.49 | 3.12 (3) | 123 |
| C8—H8A···Cl1A | 0.99 | 2.35 | 3.01 (3) | 123 |
| C13—H13···O1 | 0.95 | 2.45 | 3.367 (3) | 163 |
| C16—H16···F1Aiii | 0.95 | 2.50 | 3.35 (3) | 149 |
| Symmetry codes: (i) x, y+1, z; (ii) −x+1, −y+2, −z+1; (iii) x, −y+3/2, z−1/2. |
| Contact | Distance | Symmetry operation |
| H18A···H11 | 2.50 | -x, 1 - y, 1 - z |
| F1A···H16 | 2.50 | x, 3/2 - y, 1/2 + z |
| H5···O1 | 2.64 | 1 - x, 1/2 + y, 3/2 - z |
| O2···H2B | 2.48 | x, -1 + y, z |
| O2···H17A | 2.44 | -x, -1/2 + y, 1/2 - z |
| H5···Cl1A | 2.49 | 1 - x, 2 - y, 1 - z |
| O2···H11 | 2.68 | x, 1/2 - y, 1/2 + z |
| H6···H6 | 2.32 | 1 - x, 3 - y, 1 - z |
Acknowledgements
This work has been supported by the Baku State University (Azerbaijan). The authors' contributions are as follows. Conceptualization, AVG, MA and GMM; synthesis and X-ray analysis AVG; writing (review and editing of the manuscript) AVG and MA; funding acquisition, AVG, NDS; supervision, MA.
Funding information
This work has been supported by the Baku State University (Azerbaijan).
References
Bernstein, J., Davis, R. E., Shimoni, L. & Chang, N.-L. (1995). Angew. Chem. Int. Ed. Engl. 34, 1555–1573. CrossRef CAS Web of Science Google Scholar
Bruker (2012). APEX4 and SAINT. Bruker AXS Inc., Madison, Wisconsin, USA. Google Scholar
Butcher, R. J., Jasinski, J. P., Yathirajan, H. S., Bindya, S. & Narayana, B. (2007). Acta Cryst. E63, o3330. Web of Science CSD CrossRef IUCr Journals Google Scholar
Farrugia, L. J. (2012). J. Appl. Cryst. 45, 849–854. Web of Science CrossRef CAS IUCr Journals Google Scholar
Groom, C. R., Bruno, I. J., Lightfoot, M. P. & Ward, S. C. (2016). Acta Cryst. B72, 171–179. Web of Science CrossRef IUCr Journals Google Scholar
Gurbanov, A. V., Aliyeva, V. A., Gomila, R. M., Frontera, A., Mahmudov, K. T. & Pombeiro, A. J. (2023). Cryst. Growth Des. 23, 7335–7344. Web of Science CSD CrossRef CAS Google Scholar
Gurbanov, A. V., Kuznetsov, M. L., Mahmudov, K. T., Pombeiro, A. J. L. & Resnati, G. (2020). Chem. A Eur. J. 26, 14833–14837. Web of Science CSD CrossRef CAS Google Scholar
Gurbanov, A. V., Kuznetsov, M. L., Resnati, G., Mahmudov, K. T. & Pombeiro, A. J. L. (2022). Cryst. Growth Des. 22, 3932–3940. CrossRef CAS Google Scholar
Hathwar, V. R., Sist, M., Jørgensen, M. R. V., Mamakhel, A. H., Wang, X., Hoffmann, C. M., Sugimoto, K., Overgaard, J. & Iversen, B. B. (2015). IUCrJ 2, 563–574. Web of Science CSD CrossRef CAS PubMed IUCr Journals Google Scholar
Krause, L., Herbst-Irmer, R., Sheldrick, G. M. & Stalke, D. (2015). J. Appl. Cryst. 48, 3–10. Web of Science CSD CrossRef ICSD CAS IUCr Journals Google Scholar
Mahmoudi, G., Afkhami, F. A., Castiñeiras, A., García-Santos, I., Gurbanov, A., Zubkov, F. I., Mitoraj, M. P., Kukułka, M., Sagan, F., Szczepanik, D. W., Konyaeva, I. A. & Safin, D. A. (2018). Inorg. Chem. 57, 4395–4408. Web of Science CSD CrossRef CAS PubMed Google Scholar
Mahmoudi, G., Dey, L., Chowdhury, H., Bauzá, A., Ghosh, B. K., Kirillov, A. M., Seth, S. K., Gurbanov, A. V. & Frontera, A. (2017). Inorg. Chim. Acta 461, 192–205. CrossRef CAS Google Scholar
Mahmudov, K. T., Huseynov, F. E., Aliyeva, V. A., Guedes da Silva, M. F. C. & Pombeiro, A. J. L. (2021). Chem. A Eur. J. 27, 14370–14389. Web of Science CrossRef CAS Google Scholar
Mahmudov, K. T. & Pombeiro, A. J. L. (2023). Chem. A Eur. J. 29, e202203861. Web of Science CrossRef Google Scholar
Peng, X., Yin, G., Wu, K., Wu, G., Chen, J. & Wang, Z. (2024). Asia. J. Org. Chem. 13, e202300631. CrossRef Google Scholar
Schweizer, M. L., Furuno, J. P., Harris, A. D. & Perencevich, E. N. (2011). BMC Infect. Dis. 11, Article No. 279. Google Scholar
Sharmoukh, W., Ahsin, A., Karthikeyan, S., Mohamed, S. K., Marae, I. S., Bakhite, E. A., Soliman, A. A. E., Gahtan, M. G. M., Abuelizz, H. A., Al-Salahi, R., Mague, J. T. & El Bakri, Y. (2025). J. Sulfur Chem. 46, 55–79. CrossRef CAS Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
Sheldrick, G. M. (2015). Acta Cryst. C71, 3–8. Web of Science CrossRef IUCr Journals Google Scholar
Spackman, P. R., Turner, M. J., McKinnon, J. J., Wolff, S. K., Grimwood, D. J., Jayatilaka, D. & Spackman, M. A. (2021). J. Appl. Cryst. 54, 1006–1011. Web of Science CrossRef CAS IUCr Journals Google Scholar
Spek, A. L. (2020). Acta Cryst. E76, 1–11. Web of Science CrossRef IUCr Journals Google Scholar
Turkoglu, G., Cinar, M. E. & Ozturk, T. (2019). Sulfur Chem. pp. 79–123. CrossRef Google Scholar
Velásquez, J. D., Mahmoudi, G., Zangrando, E., Gurbanov, A. V., Zubkov, F. I., Zorlu, Y., Masoudiasl, A. & Echeverría, J. (2019). CrystEngComm 21, 6018–6025. Google Scholar
Yathirajan, H. S., Sarojini, B. K., Ashalatha, B. V., Narayana, B. & Bolte, M. (2006). Acta Cryst. E62, o4554–o4555. Web of Science CSD CrossRef IUCr Journals Google Scholar
Zhang, J., Zhang, K., Zhang, W. F., Mao, Z. P., Wang, M. & Yu, G. (2015). J. Mater. Chem. C3, 10892–10897. Google Scholar
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