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ISSN: 2056-9890

A new triclinic polymorph of 6,6′-{(1E,1E′)-[(1,2-di­phenyl­ethane-1,2-di­yl)bis­­(aza­neylyl­­idene)]bis­­(methane­ylyl­­idene)}bis­­(2-chloro­phenol)

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aDepartment of Chemistry, Faculty of Science, Tokyo University of Science, 1-3 Kagurazaka, Shinjuku-ku, Tokyo 162-8601, Japan
*Correspondence e-mail: [email protected]

Edited by Y. Ozawa, University of Hyogo, Japan (Received 9 September 2025; accepted 11 October 2025; online 17 October 2025)

The redetermined structure of a new polymorph of 6,6′-{(1E,1E′)-[(1,2-di­phenyl­ethane-1,2-di­yl)bis­(aza­neylyl­idene)]bis­(methane­ylyl­idene)}bis­(2-chloro­phenol), C28H22Cl2N2O2 was reported. The title compound was synthesized under microwave irradiation at 90 K, within 10 min. The asymmetric unit comprises a potentially tetra­dentate Schiff base ligand that crystallizes in the triclinic system with space group P1. The structure displays intra­molecular O—H⋯N hydrogen bonding, forming an S(6) ring. Comparisons are made with the monoclinic polymorph [Shen et al. (2017). RSC Adv. 7, 40640–40649].

1. Chemical context

Schiff base complexes have played a central role in the development of coordination chemistry, as evidenced by their vast number, ease and flexibility of synthetic procedures, diverse properties, and applications as bioactive compounds such as anti­tumor, anti­bacterial, anti­fungal, and various other biological applications. Numerous reports have shown that salen-type metal complexes exhibit high activity against various diseases, including cancer (Nworie et al., 2016View full citation). Polymorphism is known to exist in crystals of Schiff base complex ligands and, as reported by Suda et al. (2021View full citation), in particular the angle of the phenyl group bonded to the nitro­gen atom was different from that previously reported. Salen-type compounds are synthesized from di­amines and salicyl­aldehyde and contain two azomethine groups that are used as organic ligands in complex formation (Akitsu et al., 2011View full citation). In our laboratory, we have been studying salen-type metal complexes, which have the potential to be useful in a variety of applications, including as a new concept dye for dye-sensitized solar cells (DSSC), flame retardant in heat-stabilized PVC sheets and artificial metalloenzymes that mimic the catalytic efficiency of natural metalloenzymes (Yamane et al., 2017View full citation; Soni et al., 2020View full citation; Kashiwagi et al., 2019View full citation). Salen-type metal complexes are known to exhibit ligand disorder (Akitsu et al., 2005bView full citation). However, there are also examples of non-disordered salen-type metal complexes (Akitsu et al., 2005aView full citation). In this report, we describe a new polymorphic crystal structure of the title compound.

2. Structural commentary

The title compound (Fig. 1[link]) crystallizes in the triclinic system with PMathematical equation space group. The crystals obtained were racemic, with one mol­ecule being an RR isomer (optically active). The previously reported crystal was monoclinic, had a space group of I2/a, and was colorless and transparent (Shen et al., 2017View full citation). Intra­molecular hydrogen bonds with an S(6) (Bernstein et al., 1995View full citation) ring formation are observed, with O⋯N distances of 2.564 (3) and 2.597 (3) Å (Table 1[link]).

[Scheme 1]

Table 1
Hydrogen-bond geometry (Å, °)

D—H⋯A D—H H⋯A DA D—H⋯A
O29—H29⋯N31 0.84 1.82 2.564 (3) 147
O30—H30⋯N32 0.84 1.85 2.597 (3) 147
[Figure 1]
Figure 1
The title compound with ellipsoids drawn at the 50% probability level.

Comparing the bond distances, bond angles, and torsion angles with monoclinic polymorph the bond distances and bond angles are almost the same, but there are significant differences in the torsion angles. The torsion angles C6—C7—N31—C22 and C9—C8—N32—C15 are −22.8 (3) and −105.8 (2)°, respectively, in the title compound compared 108.3 (2)° in the monoclinic polymorph. In the title compound, N32—C8—C7—N31 is −50.7 (2)° [43.3 (2) and −42.6 (2)° in the monoclinic polymorph] while N32—C8—C9—C14 and N31—C7—C6—C1 are −60.7 (3) and −72.1 (3)°, respectively [43.2 (2) and −85.8 (2)° in the monoclinic polymorph].

3. Supra­molecular features

No inter­molecular hydrogen bonds are observed in the crystal, but a Cl⋯Cl halogen inter­action with length of 3.4122 (11) Å is found. There are two mol­ecules in the unit cell. In contrast, the unit cell of the monoclinic polymorph contains 12 mol­ecules, with an inter­molecular O⋯Cl hydrogen bond of 3.176 Å in length, weak O⋯H inter­actions (2.688 and 2.570 Å) and a C⋯Cl inter­action (3.225 Å; Shen et al., 2017View full citation). An inter­esting feature of the crystal packing (Figs. 2[link]–4[link][link]) of the title compound is the presence of centrosymmetric Cl33⋯Cl34 [3.4122 (11) Å] and nπ* (Echeverriá et al., 2018View full citation) [O30⋯C22 = 3.029 (3) Å] inter­actions, which are shorter than sum of the van der Waals radii of the involved atoms (Bondi et al., 1964View full citation). These inter­actions are supported by a short C4⋯C19 [3.361 (3) Å] contact, forming a one-dimensional extended chain of neighboring mol­ecules parallel to the bc-plane.

[Figure 2]
Figure 2
Packing of the title compound, viewed along the b-axis direction.
[Figure 3]
Figure 3
Packing of the title compound viewed along the a-axis direction.
[Figure 4]
Figure 4
The packing of the title compound, showing the chain formed by Cl⋯Cl and O⋯C contacts.

A Hirshfeld surface analysis (McKinnon et al., 2004View full citation) was performed to further investigate the inter­molecular inter­actions and contacts using Crystal Explorer 17.5 (McKinnon et al., 2007View full citation; Turner et al., 2017View full citation) (Fig. 5[link]). It indicates that the most important contributions to the packing are from H⋯H (35.2%), C⋯H/H⋯C (18.4%) and Cl⋯H/H⋯Cl (10.3%) contacts. The inter­molecular C—H⋯C hydrogen bonds are indicated by bright-red spots on the Hirshfeld surfaces mapped over dnorm and by two sharp spikes of almost the same length in the region 1.6 Å < (de + di) < 2.4 Å in the 2D finger plots (Fig. 3[link]).

[Figure 5]
Figure 5
Hirshfeld surface mapped over dnorm and the two-dimensional fingerprint plots.

The contributions to the packing from H⋯H, C⋯C, C⋯H/H⋯C, Cl⋯H/H⋯Cl, N⋯H/H⋯N, and H⋯O/O⋯H contacts are 35.2, 1.7, 33.0, 16.5, 1.4 and 8.6%, respectively. The structure is characterized by a high proportion of H⋯H inter­actions, which are van der Waals inter­actions. The high C⋯H/H⋯C value is due to the presence of aromatic rings in the compound. The low C⋯C value is due to the lack of overlapping aromatic rings in the structure.

4. Database survey

A search in the Cambridge Structural Database (CSD, Version 5.41, update of January 2024; Groom et al. 2016View full citation) for similar structures gave 6,6′-{(1E,1E′)-[(1,2-di­phenyl­ethane-1,2-di­yl)bis­(aza­neylyl­idene)]bis­(methane­ylyl­idene)}bis­(2-fluoro­phenol), which is the monoclinic polymorph (refcode LECYUQ; Shen et al., 2017View full citation). Besides this, there are several similar compounds, such as 6,6′-((1E,1E′)-{[(1R,2R)-1,2-di­phenyl­ethane-1,2-di­yl]bis­(aza­nylyl­idene)}bis­(methanylyl­idene))bis­(2-ethyl­phenol) (ref­code OWIJAI; Xu et al., 2021View full citation) and N,N-sisalicyl­idene-(R,S)(S,R)-1,2-ethanedi­amine (refcode DSPEDN01; Ramazani et al., 2006View full citation).

5. Synthesis and crystallization

3-Chloro­salicyl­aldehyde (0.039 g, 0.25 mmol) and racemic-(+/-)-1,2-di­phenyl­ethyl­enedi­amine (0.027 g, 0.125 mmol) were dissolved in 18 mL of methanol. The solution was stirred 50 s and irradiated with microwaves for 10 minutes at 353 K. The resulting clear yellow solution was evaporated. Recrystallized by slow evaporation of diethyl ether solution gave clear yellow rectangular-parallelepiped-shaped single crystals suitable for single-crystal X-ray diffraction analysis within a day. IR (ATR, cm −1): 522 (s), 776 (m), 832 (w), 896 (s), 1093 (m, C—OH), 1413 (w), 1447 (w), 1624 (m, C=N)

6. Refinement

Crystal data, data collection and structure refinement details are summarized in Table 2[link]. All C-bound H atoms were placed in geometrically calculated positions (C—H = 0.95–0.10 Å) and were refined using a riding model with Uiso(H) = 1.2Ueq(C) for R2CH and R3CH H atoms and 1.5Ueq(C) for the methyl H atoms. The O-bound H atoms H29, H30 were located based on a difference-Fourier map and refined using constraints. In the process of removing the weak reciprocal lattice points due to twins, some reflections that should be present may have been inadvertently deleted.

Table 2
Experimental details

Crystal data
Chemical formula C28H22Cl2N2O2
Mr 489.37
Crystal system, space group Triclinic, PMathematical equation
Temperature (K) 90
a, b, c (Å) 9.8543 (15), 11.1140 (17), 11.4288 (18)
α, β, γ (°) 86.563 (5), 74.417 (5), 82.951 (5)
V3) 1196.1 (3)
Z 2
Radiation type Mo Kα
μ (mm−1) 0.30
Crystal size (mm) 0.80 × 0.30 × 0.30
 
Data collection
Diffractometer Bruker D8 QUEST
Absorption correction Multi-scan (SADABS; Krause et al., 2015View full citation)
Tmin, Tmax 0.70, 0.92
No. of measured, independent and observed [I > 2σ(I)] reflections 7500, 2909, 2808
Rint 0.057
θmax (°) 22.4
(sin θ/λ)max−1) 0.536
 
Refinement
R[F2 > 2σ(F2)], wR(F2), S 0.078, 0.178, 1.14
No. of reflections 2909
No. of parameters 309
H-atom treatment H atoms treated by a mixture of independent and constrained refinement
Δρmax, Δρmin (e Å−3) 0.78, −0.56
Computer programs: APEX4 and SAINT (Bruker, 2019View full citation), SHELXT2018/2 (Sheldrick, 2015aView full citation), SHELXL2019/1 (Sheldrick, 2015bView full citation) and shelXle ShelXle (Hübschle et al., 2011View full citation).

Supporting information


Computing details top

6,6'-{(1E,1E')-[(1,2-Diphenylethane-1,2-diyl)bis(azaneylylidene)]bis(methaneylylidene)}bis(2-chlorophenol) top
Crystal data top
C28H22Cl2N2O2Z = 2
Mr = 489.37F(000) = 508
Triclinic, P1Dx = 1.359 Mg m3
a = 9.8543 (15) ÅMo Kα radiation, λ = 0.71073 Å
b = 11.1140 (17) ÅCell parameters from 7076 reflections
c = 11.4288 (18) Åθ = 2.6–22.4°
α = 86.563 (5)°µ = 0.30 mm1
β = 74.417 (5)°T = 90 K
γ = 82.951 (5)°Plate, yellow
V = 1196.1 (3) Å30.80 × 0.30 × 0.30 mm
Data collection top
Bruker D8 QUEST
diffractometer
2808 reflections with I > 2σ(I)
Detector resolution: 7.3910 pixels mm-1Rint = 0.057
φ and ω scansθmax = 22.4°, θmin = 1.9°
Absorption correction: multi-scan
(SADABS; Krause et al., 2015)
h = 1010
Tmin = 0.70, Tmax = 0.92k = 1111
7500 measured reflectionsl = 1212
2909 independent reflections
Refinement top
Refinement on F20 restraints
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.078H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.178 w = 1/[σ2(Fo2) + (0.1181P)2 + 0.4041P]
where P = (Fo2 + 2Fc2)/3
S = 1.14(Δ/σ)max < 0.001
2909 reflectionsΔρmax = 0.78 e Å3
309 parametersΔρmin = 0.56 e Å3
Special details top

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
Cl330.69894 (7)0.77330 (6)0.10865 (5)0.0321 (3)
Cl340.48781 (7)0.21930 (6)0.10402 (6)0.0386 (3)
O290.70703 (17)0.59076 (14)0.30123 (15)0.0236 (5)
H290.7079110.5412610.3595940.068 (12)*
O300.58282 (17)0.26535 (16)0.31484 (15)0.0267 (5)
H300.6146040.2792110.3733400.066 (12)*
N310.72307 (19)0.51873 (17)0.51494 (17)0.0183 (5)
N320.77316 (19)0.28700 (16)0.42902 (17)0.0183 (5)
C10.9058 (3)0.4613 (2)0.7130 (2)0.0220 (6)
H10.9771770.4522130.6383560.026000*
C120.7867 (3)0.0137 (2)0.7700 (2)0.0238 (6)
H120.7797420.0844630.8212440.029000*
C130.6670 (3)0.0463 (2)0.7423 (2)0.0234 (6)
H130.5775980.0168540.7752070.028000*
C140.6770 (2)0.1492 (2)0.6668 (2)0.0214 (6)
H140.5945820.1891050.6474070.026000*
C150.8672 (2)0.2710 (2)0.3286 (2)0.0179 (6)
H150.9635600.2748670.3267730.021000*
C160.8330 (3)0.24711 (19)0.2164 (2)0.0195 (6)
C170.9410 (3)0.2246 (2)0.1100 (2)0.0264 (6)
H171.0368170.2273210.1105520.032000*
C180.9104 (3)0.1985 (2)0.0043 (2)0.0325 (7)
H180.9847570.1820250.0672990.039000*
C190.7710 (3)0.1964 (2)0.0027 (2)0.0307 (7)
H190.7493970.1788770.0701560.037000*
C200.6632 (3)0.2197 (2)0.1067 (2)0.0253 (6)
C210.6908 (3)0.24488 (19)0.2153 (2)0.0207 (6)
C220.7105 (2)0.6290 (2)0.5464 (2)0.0180 (6)
H220.7058840.6465570.6278010.022000*
C230.7031 (2)0.7283 (2)0.4572 (2)0.0174 (6)
C240.6948 (2)0.8487 (2)0.4918 (2)0.0215 (6)
H240.6915370.8649240.5732280.026000*
C250.6914 (2)0.9436 (2)0.4090 (2)0.0236 (6)
H250.6857391.0247450.4332810.028000*
C260.6962 (2)0.9203 (2)0.2899 (2)0.0236 (6)
H260.6957070.9852960.2320840.028000*
C270.7018 (2)0.8019 (2)0.2556 (2)0.0216 (6)
C280.7046 (2)0.7043 (2)0.3380 (2)0.0186 (6)
C20.9419 (3)0.4896 (2)0.8163 (2)0.0248 (6)
H21.0376680.4981820.8126670.030000*
C30.8383 (3)0.5054 (2)0.9247 (2)0.0274 (6)
H30.8622070.5264660.9954570.033000*
C40.6999 (3)0.4904 (2)0.9294 (2)0.0304 (7)
H40.6286170.5005811.0038830.036000*
C50.6643 (3)0.4606 (2)0.8265 (2)0.0261 (6)
H50.5687050.4501080.8311120.031000*
C60.7664 (2)0.4459 (2)0.7168 (2)0.0185 (6)
C70.7240 (2)0.4172 (2)0.6047 (2)0.0181 (6)
H70.6250430.3944260.6325970.022000*
C80.8179 (2)0.3074 (2)0.5376 (2)0.0167 (6)
H80.9188270.3255160.5126540.020000*
C90.8068 (2)0.1941 (2)0.6193 (2)0.0171 (6)
C100.9253 (3)0.1342 (2)0.6481 (2)0.0236 (6)
H101.0145140.1644610.6166800.028000*
C110.9160 (3)0.0300 (2)0.7228 (2)0.0270 (6)
H110.9985890.0108310.7410720.032000*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
Cl330.0450 (5)0.0330 (5)0.0197 (5)0.0019 (3)0.0125 (3)0.0016 (3)
Cl340.0431 (5)0.0379 (5)0.0479 (6)0.0175 (4)0.0315 (4)0.0108 (4)
O290.0337 (10)0.0160 (9)0.0221 (10)0.0004 (7)0.0094 (8)0.0029 (8)
O300.0221 (10)0.0335 (11)0.0255 (11)0.0067 (8)0.0072 (8)0.0025 (8)
N310.0189 (10)0.0160 (11)0.0199 (11)0.0015 (8)0.0048 (9)0.0009 (8)
N320.0209 (11)0.0132 (10)0.0207 (11)0.0014 (8)0.0053 (9)0.0002 (8)
C10.0250 (13)0.0214 (13)0.0189 (13)0.0035 (10)0.0039 (11)0.0020 (10)
C120.0317 (14)0.0166 (13)0.0244 (14)0.0037 (11)0.0098 (11)0.0019 (10)
C130.0229 (13)0.0196 (13)0.0288 (14)0.0063 (10)0.0076 (11)0.0008 (10)
C140.0198 (13)0.0190 (13)0.0270 (14)0.0017 (10)0.0090 (11)0.0009 (10)
C150.0178 (12)0.0128 (12)0.0218 (14)0.0009 (9)0.0035 (11)0.0004 (9)
C160.0263 (13)0.0103 (12)0.0221 (14)0.0002 (10)0.0075 (11)0.0006 (9)
C170.0291 (14)0.0243 (14)0.0241 (15)0.0036 (11)0.0067 (12)0.0030 (11)
C180.0443 (17)0.0313 (15)0.0205 (14)0.0075 (12)0.0101 (12)0.0057 (11)
C190.0528 (18)0.0196 (14)0.0248 (15)0.0010 (12)0.0204 (13)0.0040 (11)
C200.0388 (16)0.0120 (12)0.0311 (15)0.0058 (11)0.0191 (13)0.0036 (10)
C210.0275 (14)0.0094 (12)0.0255 (14)0.0021 (10)0.0084 (11)0.0029 (10)
C220.0150 (12)0.0199 (13)0.0184 (13)0.0014 (9)0.0031 (10)0.0027 (10)
C230.0126 (11)0.0177 (12)0.0205 (13)0.0006 (9)0.0026 (10)0.0020 (10)
C240.0191 (13)0.0194 (13)0.0260 (14)0.0001 (10)0.0061 (10)0.0034 (10)
C250.0231 (13)0.0164 (13)0.0317 (15)0.0025 (10)0.0076 (11)0.0015 (10)
C260.0201 (12)0.0187 (13)0.0311 (15)0.0008 (10)0.0073 (11)0.0058 (10)
C270.0183 (12)0.0242 (14)0.0220 (14)0.0007 (10)0.0059 (10)0.0012 (10)
C280.0117 (12)0.0190 (13)0.0244 (14)0.0003 (9)0.0038 (10)0.0044 (10)
C20.0293 (14)0.0189 (13)0.0280 (15)0.0028 (11)0.0106 (12)0.0011 (10)
C30.0413 (17)0.0211 (13)0.0215 (14)0.0039 (11)0.0141 (12)0.0028 (10)
C40.0343 (16)0.0372 (15)0.0156 (13)0.0053 (12)0.0030 (11)0.0049 (11)
C50.0229 (13)0.0287 (14)0.0232 (14)0.0006 (11)0.0019 (11)0.0006 (11)
C60.0239 (13)0.0108 (12)0.0191 (13)0.0007 (9)0.0040 (10)0.0009 (9)
C70.0176 (12)0.0160 (12)0.0203 (13)0.0027 (9)0.0045 (10)0.0004 (10)
C80.0161 (12)0.0172 (12)0.0171 (13)0.0021 (9)0.0046 (10)0.0015 (9)
C90.0203 (12)0.0144 (12)0.0165 (12)0.0005 (9)0.0043 (10)0.0063 (9)
C100.0193 (13)0.0210 (14)0.0302 (14)0.0032 (10)0.0050 (11)0.0019 (11)
C110.0248 (14)0.0226 (14)0.0351 (16)0.0024 (11)0.0132 (12)0.0013 (11)
Geometric parameters (Å, º) top
Cl33—C271.736 (2)C19—C201.378 (4)
Cl34—C201.738 (3)C20—C211.390 (4)
O29—C281.349 (3)C22—C231.465 (3)
O30—C211.341 (3)C23—C281.399 (3)
N31—C221.280 (3)C23—C241.405 (3)
N31—C71.479 (3)C24—C251.378 (4)
N32—C151.273 (3)C25—C261.388 (4)
N32—C81.463 (3)C26—C271.386 (4)
C1—C21.385 (4)C27—C281.396 (4)
C1—C61.394 (4)C2—C31.382 (4)
C12—C111.379 (4)C3—C41.381 (4)
C12—C131.385 (4)C4—C51.383 (4)
C13—C141.388 (4)C5—C61.385 (4)
C14—C91.390 (3)C6—C71.513 (3)
C15—C161.457 (3)C7—C81.545 (3)
C16—C171.397 (4)C8—C91.519 (3)
C16—C211.409 (4)C9—C101.381 (3)
C17—C181.376 (4)C10—C111.394 (4)
C18—C191.382 (4)
C22—N31—C7121.14 (19)C27—C26—C25119.8 (2)
C15—N32—C8118.73 (19)C26—C27—C28121.4 (2)
C2—C1—C6121.0 (2)C26—C27—Cl33119.82 (19)
C11—C12—C13119.5 (2)C28—C27—Cl33118.69 (18)
C12—C13—C14120.3 (2)O29—C28—C27119.4 (2)
C13—C14—C9120.5 (2)O29—C28—C23122.2 (2)
N32—C15—C16122.6 (2)C27—C28—C23118.4 (2)
C17—C16—C21119.7 (2)C3—C2—C1119.9 (2)
C17—C16—C15120.3 (2)C4—C3—C2119.5 (2)
C21—C16—C15120.1 (2)C3—C4—C5120.6 (2)
C18—C17—C16120.8 (2)C4—C5—C6120.7 (2)
C17—C18—C19119.7 (2)C5—C6—C1118.3 (2)
C20—C19—C18120.1 (2)C5—C6—C7119.7 (2)
C19—C20—C21121.6 (2)C1—C6—C7122.0 (2)
C19—C20—Cl34120.1 (2)N31—C7—C6115.14 (18)
C21—C20—Cl34118.4 (2)N31—C7—C8107.84 (18)
O30—C21—C20119.6 (2)C6—C7—C8112.28 (19)
O30—C21—C16122.2 (2)N32—C8—C9109.64 (17)
C20—C21—C16118.1 (2)N32—C8—C7109.18 (18)
N31—C22—C23120.2 (2)C9—C8—C7110.89 (18)
C28—C23—C24119.8 (2)C10—C9—C14118.8 (2)
C28—C23—C22120.7 (2)C10—C9—C8120.6 (2)
C24—C23—C22119.6 (2)C14—C9—C8120.6 (2)
C25—C24—C23120.8 (2)C9—C10—C11120.9 (2)
C24—C25—C26119.8 (2)C12—C11—C10120.0 (2)
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
O29—H29···N310.841.822.564 (3)147
O30—H30···N320.841.852.597 (3)147
 

Funding information

The following funding is acknowledged: Grant-in-Aid for Scientific Research (B) KAKENHI (grant No. 24K00912).

References

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