research communications\(\def\hfill{\hskip 5em}\def\hfil{\hskip 3em}\def\eqno#1{\hfil {#1}}\)

Journal logoCRYSTALLOGRAPHIC
COMMUNICATIONS
ISSN: 2056-9890

Synthesis and structure of 2-amino-4-methylpyridin-1-ium hydrogen squarate

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aCrystal Growth & Thin Film Laboratory, PG& Research Department of Physics, Thanthai Periyar Government Arts and Science College (Autonomous), Affiliated to Bharathidasan University, Tiruchirappalli-620 023, Tamil Nadu, India, and bDepartment of Bioinformatics, Vels Institute of Science, Technology & Advanced Studies, Chennai-600117, Tamil Nadu, India
*Correspondence e-mail: [email protected], [email protected]

Edited by W. T. A. Harrison, University of Aberdeen, United Kingdom (Received 31 October 2025; accepted 21 November 2025; online 28 November 2025)

The title salt (systematic name: 2-amino-4-methyl­pyridin-1-ium 2-hy­droxy-3,4-dioxo­cyclo­but-1-en-1-olate), C6H9N2+·C4HO4, was obtained by the proton-transfer reaction between 2-amino-4-methyl­pyridine and squaric acid in aqueous solution: protonation occurs at the pyridine nitro­gen atom, while squaric acid is singly deprotonated. In the crystal, the cations and anions are linked by N—H⋯O, O—H⋯O, and C—H⋯O hydrogen bonds, forming infinite layers. These layers are consolidated by ππ stacking inter­actions, resulting in a columnar packing arrangement. Hirshfeld surface analysis reveals that O⋯H/H⋯O contacts dominate the inter­molecular inter­actions, consistent with the hydrogen-bonding network observed in the crystal structure.

1. Chemical context

Proton-transfer mol­ecular salts arise when a Brønsted acid donates a proton to a Brønsted base, generating oppositely charged ions stabilized by charge-assisted hydrogen bonds and other non-covalent inter­actions (Aakeröy et al., 2007View full citation). If proton transfer does not occur, a co-crystal may result in the solid state (Cruz-Cabeza et al., 2022View full citation; Gilli et al., 2002View full citation; Lemmerer et al., 2015View full citation; Cruz-Cabeza, 2012View full citation). As to the outcome of a particular reaction, a simple qualitative approach is to consider the difference in pKa values (ΔpKa) between the conjugate acid of the base (BH+) and the acid (HA). If ΔpKa < 0, the system favors a co-crystal (all components remain neutral), while ΔpKa > 3 favors salt formation (Cruz-Cabeza, 2012View full citation; Cruz-Cabeza et al., 2022View full citation). For inter­mediate ΔpKa values, however, the outcome is less predictable (Delori et al., 2013View full citation). Since hydrogen-bonded systems derived from organic cations and anions often form stronger hydrogen bonds than their neutral counterparts (Bertolasi et al., 2001View full citation), these systems have become increasingly important in crystal engineering and materials science because their structural frameworks and physicochemical properties can be finely tuned. Compared with their neutral precursors, proton-transfer salts often show greater solubility, stability, and functionality, which makes them attractive candidates for pharmaceuticals (Zhao et al., 2020View full citation; Goswami et al., 2025View full citation), optoelectronic materials (Huang et al., 2022View full citation; K. K et al., 2025View full citation; Sangtani et al., 2017View full citation), and supra­molecular assemblies.

Squaric acid (3,4-di­hydroxy­cyclo­but-3-ene-1,2-dione, C4H2O4) and its derivatives have attracted significant attention in organic chemistry, materials science, and medicinal chemistry (Chasák et al., 2021View full citation; Grus et al., 2021View full citation, Laramie et al., 2017View full citation). The inter­est in its structural chemistry arises from the planar, symmetrical, and strained nature of the squaric acid mol­ecule, which allows for diverse and robust hydrogen-bonding patterns in the solid state (Allen et al., 2013View full citation; Gilli et al., 2001View full citation). As a strong diprotic organic acid (pKa1 =1.2–1.7, pKa2 = 3.2–3.5; MacDonald, 1968View full citation), squaric acid readily forms proton-transfer compounds with nitro­gen bases, and numerous examples of such salts are recorded in the Cambridge Structural Database (Groom et al., 2016View full citation). Upon deprotonation, squaric acid forms either the hydrogen squarate anion (Hsq) or the squarate dianion (sq2–). All three species are nearly planar, featuring symmetric π-systems with extensive electronic delocalization with conjugated C=C and C=O bonds. This planarity, combined with their electronic structure, enables strong hydrogen-bonding inter­actions: while the squarate dianion acts exclusively as a hydrogen-bond acceptor, the parent acid and the mono-deprotonated hydrogen squarate ion can function as both donors and acceptors, making them versatile building blocks for supra­molecular architectures (Seidel & Kolev, 2024View full citation).

2-Amino-4-methyl-pyridine (2A4MP, C6H8N2) is a versatile pyridine-based heterocyclic compound in which the pyridine nitro­gen atom readily undergoes protonation, while the amine group donates electrons, facilitating the development of donor–acceptor (DA) type systems. The ability of the pyridine N atom to accept protons from a wide range of organic acids, such as aromatic and aliphatic carb­oxy­lic acids, phenols, and related derivatives, makes it an excellent building block for the formation of stable mol­ecular salts. Proton-transfer salts of 2A4MP and related pyridinium derivatives have been widely explored for their nonlinear optical (NLO) properties including 2-amino-4-methylpyridinium 4-meth­oxybenzoate (Krishnakumar et al., 2018View full citation), 2-amino-4-methyl­pyridinium 4-nitro­phenolate-4-nitro­phenol (Karuppusamy et al., 2023View full citation; Thirupugalmani et al., 2015View full citation), 2-amino-4-methyl­pyridinium benzilate (Madhankumar et al., 2020View full citation) and others. As part of our studies in this area, the title proton-transfer mol­ecular salt, C6H9N2+·C4HO4 (I), has been synthesized and its structural features are described here.

[Scheme 1]

2. Structural commentary

Salt (I) was obtained by proton transfer from squaric acid to 2-amino-4-methyl­pyridine in aqueous solution. The proton transfer observed in the title salt is consistent with the acidity constants of the components [pKa(squaric acid) ≃ 1.2–1.7; pKa(2-amino-4-methyl­pyridinium) ≃ 7.48], giving ΔpKa > 3, which favors salt formation rather than co-crystallization. Although ΔpKa relative to the second dissociation of squaric acid (pKa ≃ 3.2–3.5) is also greater than 3, the formation of the fully deprotonated squarate dianion does not occur here. Whether squaric acid is mono- or fully deprotonated in the solid state depends on various factors such as stoichiometry, crystallization conditions and inter­molecular inter­actions, especially hydrogen bonds. In this case, the isolated crystalline product is the 1:1 hydrogen-squarate salt (Hsq), which is consistent with the 1:1 stoichiometry and charge-assisted hydrogen bonding that favours the monoanion. Salt (I) crystallizes in the monoclinic system, space group P21/c. The asymmetric unit contains one C6H9N2+ 2-amino-4-methyl­pyridin-1-ium cation and one C4HO4 hydrogen squarate anion (Fig. 1[link]) in which protonation occurs at the pyridine nitro­gen atom N1.

[Figure 1]
Figure 1
The mol­ecular structure of (I) with displacement ellipsoids drawn at the 50% probability level. Hydrogen bonds are indicated by dashed lines.

Both ions are nearly planar. The hydrogen squarate (Hsq) anion deviates by less than 0.01 Å from planarity, and the cation shows a similar small deviation. The two planes are almost parallel, with a dihedral angle of 5.59 (12)° between the species in the asymmetric unit. Within the squarate ring, the C—C—C bond angles are close to 90°, while bond distances reveal partial bond localization: the shorter C—C bonds [C9—C10, 1.436 (2); C10—C11, 1.424 (2) Å] suggest double-bond character whereas the longer bonds [C8—C9, 1.484 (2); C8—C11, 1.479 (2) Å] resemble single bonds. Among the C—O bonds, one is short [C8—O1 = 1.228 (2) Å], while the others are elongated [C9—O2, 1.252 (2); C11—O4, 1.255 (2); C10—O3, 1.298 (2) Å]. The unusually long C10—O3 bond marks the main site of negative charge, which is delocalized over O2 and O4, consistent with resonance in the hydrogen squarate monoanion. Overall, the alternation of elongated and shortened C—C and C—O bonds highlights the extent of delocalization in the Hsq ion, in agreement with previous reports (Gołdyn et al., 2022View full citation; Dega-Szafran et al., 2012cView full citation; 2013aView full citation).

3. Supra­molecular features

In the extended structure, all four oxygen atoms of the HSq anion, along with the amine group, the protonated pyridinium N atom and the hydroxyl hydrogen atom, act as hydrogen-bond donors and acceptors, giving rise to a network of N—H⋯O, O—H⋯O, and C—H⋯O hydrogen bonds within the crystal structure (Table 1[link]). In the asymmetric unit, the cation and anion are connected through N1—H1⋯O2 and N2—H2B⋯O1 hydrogen bonds, forming an R22(9) motif. Two HSq anions generate a centrosymmetric dimer via pairwise O3—H3A⋯O4 links, which corresponds to an R22(10) motif. These HSq dimers are further linked by N2—H2A⋯O2 inter­actions, together with C—H⋯O contacts involving C3 and C6. Together, these inter­actions link the cations and anions into infinite layers propagating in the (10Mathematical equation) plane (Fig. 2[link]). Adjacent layers are connected in the z direction through weak ππ stacking inter­actions between the squarate ring and the pyridine ring with a centroid–centroid distance of 3.9234 (13) Å (slippage = 2.096 Å); symmetry: x, y, 1 + z). Overall, these hydrogen-bonding and stacking inter­actions direct the assembly of cations and anions into a columnar arrangement, as shown in Fig. 3[link].

Table 1
Hydrogen-bond geometry (Å, °)

D—H⋯A D—H H⋯A DA D—H⋯A
N1—H1⋯O2 0.88 (2) 1.87 (2) 2.734 (2) 167 (2)
N2—H2A⋯O2i 0.87 (2) 2.16 (2) 3.025 (2) 175 (2)
N2—H2B⋯O1 0.91 (2) 1.95 (2) 2.856 (2) 170 (2)
O3—H3A⋯O4ii 0.87 (2) 1.67 (2) 2.5145 (19) 163 (3)
C3—H3⋯O3i 0.93 2.34 3.230 (2) 159
C6—H6⋯O1iii 0.93 2.49 3.284 (2) 143
Symmetry codes: (i) Mathematical equation; (ii) Mathematical equation; (iii) Mathematical equation.
[Figure 2]
Figure 2
Part of the crystal structure of (I), showing the infinite layers formed through N—H⋯O, O—H⋯O, and C—H⋯O hydrogen bonds.
[Figure 3]
Figure 3
Overall crystal packing of (I), illustrating the columnar arrangement of the layers.

4. Hirshfeld surface analysis

Crystal Explorer 21 (Turner et al., 2017View full citation) was used to calculate the Hirshfeld surfaces of the cation and anion of the title salt and to generate two-dimensional fingerprint plots for the analysis and qu­anti­fication of various inter­molecular inter­actions in the crystal packing.

The HS mapped over dnorm within the range of −0.27 to 1.15 a.u., and two views (front and back) of the HS for both the cation and anion are shown in Fig. 4[link]. Prominent bright-red spots on the HS confirm the presence of significant hydrogen-bonding inter­actions, specifically N—H⋯O and O—H⋯O inter­actions in the crystal structure. Weaker red spots appear near the carbon atoms in both the squarate ring (Cg1) and the pyridine ring (Cg2), which correspond to ππ stacking inter­actions.

[Figure 4]
Figure 4
Two different orientations of the Hirshfeld surface of (I) mapped over dnorm

The two-dimensional fingerprint and decomposed plots for the individual components (cation and anion) are presented in Fig. 5[link]. H⋯H contacts contribute 40.1% to the cation surface, representing the dominant inter­action in its crystal packing. In contrast, for the anion, these contacts account for only 6.2% of the surface, ranking as the fourth major contributor to stabilization. The corresponding FP plots reveal a deep, asymmetric broad spike around de + di > 2.4 Å (where de and di denote the distances from the Hirshfeld surface to the nearest nucleus outside and inside the surface, respectively) for the cation, whereas in the anion, these contacts appear as weak and well-separated spots. These distinct shapes suggest markedly different hydrogen environments and inter­action patterns between the cationic and anionic units. The next major inter­actions are O⋯H/H⋯O contacts, contributing 30.5% and 62.8% for the cation and anion, respectively, indicating that these contacts play a dominant role in the anion. In the cation, this contact appears as a single sharp spike at de + di = 1.6 Å, while in the anion, two distinct spikes are observed at the same distance, reflecting stronger and more varied hydrogen-bonding environments. C⋯H/H⋯C inter­actions contribute 13.8% and 10.2% to the cation and anion surfaces, respectively. Other minor contributions include N⋯H/H⋯N (5.5%), C⋯C (4.8%), and C⋯O/O⋯C (4.0%) for the cation, and C⋯O/O⋯C (7.9%), O⋯O (5.8%), and N⋯O/O⋯N (1.0%) for the anion. Overall, the FP analysis reveals that both the cation and anion are predominantly stabilized through C/N/O—H⋯O-type hydrogen-bonding inter­actions, although their spatial distribution and intensity differ significantly.

[Figure 5]
Figure 5
Two-dimensional fingerprint plots for the cation and anion in (I) showing the percentage contribution of the different contacts to the total Hirshfeld surface area.

5. Database survey

A search of the Cambridge Structural Database (CSD, Version 6.00, updates of April 2025 and August 2025; (Groom et al., 2016View full citation) using Conquest (Bruno et al., 2002View full citation) identified 52 entries containing the neutral squaric acid mol­ecule. Among these, 14 hits correspond to purely neutral squaric acid, while eight represent co-crystals formed with various organic bases, including N-methyl­piperidine betaine (CSD refcode CAPKUB; Dega-Szafran et al., 2012bView full citation), N-ethyl­piperidine betaine (CILQAR; Dega-Szafran et al., 2013aView full citation), pyridinium-2-carboxyl­ate (HETSEI; Gołdyn et al., 2022View full citation), 2-(quinuclidinium)propionate (DIMSUP; Dega-Szafran et al., 2013bView full citation), trigonelline (PAKNUM; Dega-Szafran et al., 2012aView full citation), pyrazine­carboxamide (PAQNOM; Korkmaz et al., 2011View full citation), urea (QIRKAD; Sabareesh et al., 2001View full citation) and glycine (SIZKIX01; Tyagi et al., 2016View full citation).

For hydrogen squarate species, 193 structures were found, comprising 15 metal complexes, with the remaining being mono-deprotonated salts involving a variety of aliphatic primary amines, amino acids, and nitro­gen containing heterocycles such as pyridine, bi­pyridine and related compounds. Furthermore, 104 entries were found containing the squarate dianion.

A separate CSD search for the 2-amino-4-methyl­pyridin-1-ium cation revealed 63 entries, most of which arise from the reaction of 2-amino-4-methyl­pyridine with various aliphatic or aromatic carb­oxy­lic acid and phenolic co-formers.

6. Synthesis and crystallization

Squaric acid (2.28 g, 0.0199 mmol) and 2-amino-4-methyl­pyridine (2.162 g, 0.0199 mmol) were dissolved in 25 ml of double-distilled water and stirred at room temperature (298 K) for 4 h. The reaction mixture was then filtered and allowed to evaporate slowly at room temperature, yielding yellow plates of (I) suitable for X-ray diffraction analysis.

7. Refinement

Crystal data, data collection and structure refinement details are summarized in Table 2[link]. The N-bound H atoms were located in a difference-Fourier map and refined with isotropic displacement parameters. All C-bound H atoms were included in calculated positions and treated as riding atoms with C–H = 0.93–0.98 Å and Uiso(H) = 1.2Ueq(C).

Table 2
Experimental details

Crystal data
Chemical formula C6H9N2+·C4HO4
Mr 222.20
Crystal system, space group Monoclinic, P21/c
Temperature (K) 305
a, b, c (Å) 5.3441 (3), 24.9059 (12), 7.6505 (4)
β (°) 95.597 (3)
V3) 1013.42 (9)
Z 4
Radiation type Cu Kα
μ (mm−1) 0.97
Crystal size (mm) 0.32 × 0.13 × 0.04
 
Data collection
Diffractometer Bruker D8 Venture Diffractometer
Absorption correction Multi-scan (SADABS; Krause et al., 2015View full citation)
Tmin, Tmax 0.731, 1.000
No. of measured, independent and observed [I > 2σ(I)] reflections 20467, 1860, 1602
Rint 0.063
(sin θ/λ)max−1) 0.602
 
Refinement
R[F2 > 2σ(F2)], wR(F2), S 0.048, 0.133, 1.05
No. of reflections 1860
No. of parameters 159
No. of restraints 4
H-atom treatment H atoms treated by a mixture of independent and constrained refinement
Δρmax, Δρmin (e Å−3) 0.21, −0.16
Computer programs: APEX4, SAINT and XPREP (Bruker, 2021View full citation), SHELXT2018/2 (Sheldrick, 2015aView full citation) SHELXL2019/2 (Sheldrick, 2015bView full citation), ORTEP-3 for Windows (Farrugia, 2012View full citation) and Mercury (Macrae et al., 2020View full citation).

Supporting information


Computing details top

2-amino-4-methylpyridin-1-ium 2-hydroxy-3,4-dioxocyclobut-1-en-1-olate top
Crystal data top
C6H9N2+·C4HO4F(000) = 464
Mr = 222.20Dx = 1.456 Mg m3
Monoclinic, P21/cCu Kα radiation, λ = 1.54178 Å
a = 5.3441 (3) ÅCell parameters from 9939 reflections
b = 24.9059 (12) Åθ = 3.6–68.2°
c = 7.6505 (4) ŵ = 0.97 mm1
β = 95.597 (3)°T = 305 K
V = 1013.42 (9) Å3Plate, yellow
Z = 40.32 × 0.13 × 0.04 mm
Data collection top
Bruker D8 Venture Diffractometer1602 reflections with I > 2σ(I)
Radiation source: micro focus sealed tubeRint = 0.063
φ and ω scansθmax = 68.2°, θmin = 3.6°
Absorption correction: multi-scan
(SADABS; Krause et al., 2015)
h = 66
Tmin = 0.731, Tmax = 1.000k = 3029
20467 measured reflectionsl = 99
1860 independent reflections
Refinement top
Refinement on F2Hydrogen site location: mixed
Least-squares matrix: fullH atoms treated by a mixture of independent and constrained refinement
R[F2 > 2σ(F2)] = 0.048 w = 1/[σ2(Fo2) + (0.0687P)2 + 0.3185P]
where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.133(Δ/σ)max < 0.001
S = 1.05Δρmax = 0.21 e Å3
1860 reflectionsΔρmin = 0.16 e Å3
159 parametersExtinction correction: SHELXL2019/2 (Sheldrick, 2015b), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
4 restraintsExtinction coefficient: 0.0087 (17)
Special details top

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
C80.2327 (4)0.36789 (7)0.3849 (3)0.0511 (5)
C90.4649 (3)0.35258 (7)0.4961 (2)0.0484 (4)
C100.5292 (3)0.40844 (7)0.5131 (2)0.0503 (5)
C110.3083 (3)0.42479 (7)0.4074 (2)0.0508 (5)
C20.1668 (3)0.19296 (7)0.3631 (2)0.0490 (5)
C30.1295 (3)0.13741 (7)0.3398 (3)0.0513 (5)
H30.0140790.1252980.2729250.062*
C40.2983 (3)0.10099 (8)0.4125 (2)0.0516 (5)
C50.5147 (4)0.12001 (8)0.5150 (3)0.0562 (5)
H50.6338640.0960780.5661240.067*
C60.5456 (3)0.17340 (8)0.5375 (3)0.0555 (5)
H60.6874780.1860860.6049950.067*
C70.2546 (4)0.04188 (8)0.3877 (3)0.0694 (6)
H7A0.1145320.0361920.3012450.104*
H7B0.2192240.0260880.4970820.104*
H7C0.4022030.0255290.3489130.104*
N10.3744 (3)0.20903 (6)0.4638 (2)0.0515 (4)
H10.412 (4)0.2429 (7)0.484 (3)0.062*
N20.0057 (3)0.22921 (7)0.2916 (3)0.0667 (5)
H2A0.121 (4)0.2164 (10)0.225 (3)0.080*
H2B0.038 (5)0.2650 (7)0.306 (3)0.080*
O10.0553 (3)0.34331 (5)0.3083 (2)0.0667 (5)
O20.5578 (2)0.30894 (5)0.55156 (19)0.0590 (4)
O30.7207 (3)0.43223 (6)0.5973 (2)0.0714 (5)
H3A0.719 (6)0.4672 (7)0.598 (4)0.107*
O40.2147 (3)0.46871 (5)0.3536 (2)0.0708 (5)
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
C80.0517 (10)0.0445 (9)0.0547 (10)0.0023 (8)0.0068 (8)0.0002 (8)
C90.0495 (9)0.0401 (9)0.0534 (10)0.0016 (7)0.0053 (8)0.0007 (7)
C100.0521 (10)0.0407 (9)0.0547 (10)0.0042 (7)0.0117 (8)0.0006 (7)
C110.0550 (10)0.0398 (9)0.0544 (10)0.0006 (7)0.0117 (8)0.0034 (7)
C20.0439 (9)0.0463 (10)0.0547 (10)0.0023 (7)0.0055 (8)0.0001 (8)
C30.0468 (9)0.0449 (10)0.0594 (11)0.0055 (7)0.0097 (8)0.0023 (8)
C40.0505 (10)0.0465 (10)0.0562 (10)0.0037 (8)0.0033 (8)0.0015 (8)
C50.0493 (10)0.0517 (11)0.0648 (12)0.0020 (8)0.0094 (9)0.0043 (9)
C60.0439 (9)0.0581 (11)0.0614 (11)0.0050 (8)0.0105 (8)0.0003 (9)
C70.0701 (13)0.0455 (11)0.0877 (15)0.0022 (9)0.0168 (11)0.0056 (10)
N10.0473 (8)0.0451 (8)0.0596 (9)0.0060 (6)0.0082 (7)0.0028 (7)
N20.0586 (10)0.0449 (9)0.0902 (13)0.0002 (8)0.0249 (9)0.0001 (9)
O10.0583 (8)0.0490 (8)0.0864 (10)0.0072 (6)0.0246 (7)0.0013 (7)
O20.0577 (8)0.0376 (7)0.0768 (9)0.0006 (5)0.0183 (6)0.0037 (6)
O30.0683 (9)0.0438 (8)0.0935 (11)0.0083 (6)0.0349 (8)0.0030 (7)
O40.0780 (10)0.0408 (7)0.0861 (10)0.0021 (6)0.0296 (8)0.0071 (7)
Geometric parameters (Å, º) top
C8—O11.228 (2)C3—C41.359 (3)
C8—C111.479 (2)C4—C51.414 (3)
C8—C91.484 (2)C4—C71.500 (3)
C9—O21.252 (2)C5—C61.349 (3)
C9—C101.436 (2)C5—H50.9300
C10—O31.298 (2)C6—N11.357 (2)
C10—C111.424 (2)C6—H60.9300
C11—O41.255 (2)C7—H7A0.9600
C2—N21.328 (2)C7—H7B0.9600
C2—N11.348 (2)C7—H7C0.9600
C2—C31.407 (2)N1—H10.876 (16)
O1—C8—C11136.27 (18)C5—C4—C7120.50 (18)
O1—C8—C9135.13 (17)C6—C5—C4118.95 (18)
C11—C8—C988.61 (14)C6—C5—H5120.5
O2—C9—C10136.63 (17)C4—C5—H5120.5
O2—C9—C8134.36 (16)C5—C6—N1121.49 (17)
C10—C9—C889.00 (14)C5—C6—H6119.3
O3—C10—C11136.15 (17)N1—C6—H6119.3
O3—C10—C9131.12 (17)C4—C7—H7A109.5
C11—C10—C992.73 (14)C4—C7—H7B109.5
O4—C11—C10135.83 (18)H7A—C7—H7B109.5
O4—C11—C8134.51 (17)C4—C7—H7C109.5
C10—C11—C889.66 (14)H7A—C7—H7C109.5
N2—C2—N1119.86 (17)H7B—C7—H7C109.5
N2—C2—C3122.58 (17)C2—N1—C6121.82 (17)
N1—C2—C3117.57 (16)C2—N1—H1123.2 (16)
C4—C3—C2121.62 (17)C6—N1—H1114.9 (16)
C4—C3—H3119.2C2—N2—H2A115.3 (17)
C2—C3—H3119.2C2—N2—H2B120.4 (17)
C3—C4—C5118.53 (18)H2A—N2—H2B124 (2)
C3—C4—C7120.96 (17)C10—O3—H3A117 (2)
O1—C8—C9—O21.0 (4)C9—C8—C11—O4179.8 (2)
C11—C8—C9—O2178.9 (2)O1—C8—C11—C10180.0 (3)
O1—C8—C9—C10180.0 (2)C9—C8—C11—C100.12 (15)
C11—C8—C9—C100.12 (15)N2—C2—C3—C4179.3 (2)
O2—C9—C10—O30.7 (4)N1—C2—C3—C41.3 (3)
C8—C9—C10—O3179.7 (2)C2—C3—C4—C50.5 (3)
O2—C9—C10—C11178.8 (2)C2—C3—C4—C7179.5 (2)
C8—C9—C10—C110.13 (15)C3—C4—C5—C60.2 (3)
O3—C10—C11—O40.7 (4)C7—C4—C5—C6178.7 (2)
C9—C10—C11—O4179.8 (2)C4—C5—C6—N10.1 (3)
O3—C10—C11—C8179.6 (3)N2—C2—N1—C6179.1 (2)
C9—C10—C11—C80.13 (15)C3—C2—N1—C61.5 (3)
O1—C8—C11—O40.4 (4)C5—C6—N1—C20.8 (3)
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
N1—H1···O20.88 (2)1.87 (2)2.734 (2)167 (2)
N2—H2A···O2i0.87 (2)2.16 (2)3.025 (2)175 (2)
N2—H2B···O10.91 (2)1.95 (2)2.856 (2)170 (2)
O3—H3A···O4ii0.87 (2)1.67 (2)2.5145 (19)163 (3)
C3—H3···O3i0.932.343.230 (2)159
C6—H6···O1iii0.932.493.284 (2)143
Symmetry codes: (i) x1, y+1/2, z1/2; (ii) x+1, y+1, z+1; (iii) x+1, y+1/2, z+1/2.
 

Acknowledgements

The authors gratefully acknowledge SAIF, IIT Madras, for SCXRD data collection.

References

Return to citationAakeröy, C. B., Fasulo, M. E. & Desper, J. (2007). Mol. Pharm. 4, 317–322.  Web of Science PubMed Google Scholar
Return to citationAllen, F. H., Cruz-Cabeza, A. J., Wood, P. A. & Bardwell, D. A. (2013). Acta Cryst. B69, 514–523.  Web of Science CrossRef IUCr Journals Google Scholar
Return to citationBertolasi, V., Gilli, P., Ferretti, V. & Gilli, G. (2001). Acta Cryst. B57, 591–598.  Web of Science CSD CrossRef CAS IUCr Journals Google Scholar
Return to citationBruker (2021). APEX4, SAINT and XPREP. Bruker AXS Inc., Madison, Wisconsin, USA.  Google Scholar
Return to citationBruno, I. J., Cole, J. C., Edgington, P. R., Kessler, M., Macrae, C. F., McCabe, P., Pearson, J. & Taylor, R. (2002). Acta Cryst. B58, 389–397.  Web of Science CrossRef CAS IUCr Journals Google Scholar
Return to citationChasák, J., Šlachtová, V., Urban, M. & Brulíková, L. (2021). Eur. J. Med. Chem. 209, 112872.  Web of Science PubMed Google Scholar
Return to citationCruz-Cabeza, A. J. (2012). CrystEngComm 14, 6362–6365.  Google Scholar
Return to citationCruz-Cabeza, A. J., Lusi, M., Wheatcroft, H. P. & Bond, A. D. (2022). Faraday Discuss. 235, 446–466.  Web of Science CAS PubMed Google Scholar
Return to citationDega-Szafran, Z., Dutkiewicz, G., Kosturkiewicz, Z. & Szafran, M. (2012a). J. Mol. Struct. 1007, 113–121.  Google Scholar
Return to citationDega-Szafran, Z., Dutkiewicz, G., Kosturkiewicz, Z. & Szafran, M. (2012b). J. Mol. Struct. 1015, 86–93.  Google Scholar
Return to citationDega-Szafran, Z., Dutkiewicz, G., Kosturkiewicz, Z. & Szafran, M. (2013a). J. Mol. Struct. 1054–1055, 170–178.  Google Scholar
Return to citationDega-Szafran, Z., Katrusiak, A. & Szafran, M. (2012c). J. Mol. Struct. 1030, 184–190.  Google Scholar
Return to citationDega-Szafran, Z., Katrusiak, A. & Szafran, M. (2013b). Aust. J. Chem. 66, 836–842.  Google Scholar
Return to citationDelori, A., Galek, P. T. A., Pidcock, E., Patni, M. & Jones, W. (2013). CrystEngComm 15, 2916–2928.  CrossRef Google Scholar
Return to citationFarrugia, L. J. (2012). J. Appl. Cryst. 45, 849–854.  Web of Science CrossRef CAS IUCr Journals Google Scholar
Return to citationGilli, G., Bertolasi, V., Gilli, P. & Ferretti, V. (2001). Acta Cryst. B57, 859–865.  Web of Science CrossRef CAS IUCr Journals Google Scholar
Return to citationGilli, P., Bertolasi, V., Pretto, L., Lyčka, A. & Gilli, G. (2002). J. Am. Chem. Soc. 124, 13554–13567.  Web of Science CSD CrossRef PubMed CAS Google Scholar
Return to citationGołdyn, M., Skowronek, J., Komasa, A., Bartoszak-Adamska, E., Lewandowska, A., Dega-Szafran, Z. & Cofta, G. (2022). Cryst­EngComm 24, 7821–7832.  Google Scholar
Return to citationGoswami, A., Das, S. P., Kalita, B. K., Zeleke, T. Y. & Sarma, B. (2025). Cryst. Growth Des. 25, 6183–6196.  CrossRef Google Scholar
Return to citationGroom, C. R., Bruno, I. J., Lightfoot, M. P. & Ward, S. C. (2016). Acta Cryst. B72, 171–179.  Web of Science CrossRef IUCr Journals Google Scholar
Return to citationGrus, T., Lahnif, H., Klasen, B., Moon, E.-S., Greifenstein, L. & Roesch, F. (2021). Bioconjugate Chem. 32, 1223–1231.  Web of Science CrossRef CAS Google Scholar
Return to citationHuang, S., Venables, D. S. & Lawrence, S. E. (2022). Cryst. Growth Des. 22, 6504–6520.  CrossRef PubMed Google Scholar
Return to citationKaruppusamy, S., Muralidharan, S., Babu, K. D., Sakthivel, P. & Choi, D. (2023). Heliyon 9, e18260.  CrossRef PubMed Google Scholar
Return to citationK. K., M. S., Dey, S., Menon, A. M., Psr, F. N., Kumari, A., Adak, M. K., Shashiprabha, Ghosh, D. & Chopra, D. (2025). Cryst. Growth Des. 25, 8252–8270.  Google Scholar
Return to citationKorkmaz, U., Uçar, Bulut, A. & Büyükgüngör, O. (2011). Struct. Chem. 22, 1249–1259.  CrossRef Google Scholar
Return to citationKrause, L., Herbst-Irmer, R., Sheldrick, G. M. & Stalke, D. (2015). J. Appl. Cryst. 48, 3–10.  Web of Science CSD CrossRef ICSD CAS IUCr Journals Google Scholar
Return to citationKrishnakumar, M., Karthick, S., Thirupugalmani, K., Babu, B. & Vinitha, G. (2018). Opt. Laser Technol. 101, 91–106.  CrossRef Google Scholar
Return to citationLaramie, M. D., Levitz, A. & Henary, M. (2017). Sens. Actuators B Chem. 243, 1191–1204.  Web of Science CrossRef CAS Google Scholar
Return to citationLemmerer, A., Govindraju, S., Johnston, M., Motloung, X. & Savig, K. L. (2015). CrystEngComm 17, 3591–3595.  CrossRef Google Scholar
Return to citationMacDonald, D. J. (1968). J. Org. Chem. 33, 4559–4560.  CrossRef CAS Web of Science Google Scholar
Return to citationMacrae, C. F., Sovago, I., Cottrell, S. J., Galek, P. T. A., McCabe, P., Pidcock, E., Platings, M., Shields, G. P., Stevens, J. S., Towler, M. & Wood, P. A. (2020). J. Appl. Cryst. 53, 226–235.  Web of Science CrossRef CAS IUCr Journals Google Scholar
Return to citationMadhankumar, S., Muthuraja, P. & Dhandapani, M. (2020). J. Mol. Struct. 1201, 127151.  CrossRef Google Scholar
Return to citationSabareesh, V., Ranganathan, A. & Kulkarni, G. U. (2001). CSD Communication (refcode QIRKAD). CCDC, Cambridge, England.  Google Scholar
Return to citationSangtani, E., Mandal, S. K., Sreelakshmi, A. S., Munshi, P. & Gonnade, R. G. (2017). Cryst. Growth Des. 17, 3071–3087.  CrossRef Google Scholar
Return to citationSeidel, R. W. & Kolev, T. M. (2024). Acta Cryst. E80, 973–975.  CrossRef IUCr Journals Google Scholar
Return to citationSheldrick, G. M. (2015a). Acta Cryst. A71, 3–8.  Web of Science CrossRef IUCr Journals Google Scholar
Return to citationSheldrick, G. M. (2015b). Acta Cryst. C71, 3–8.  Web of Science CrossRef IUCr Journals Google Scholar
Return to citationThirupugalmani, K., Karthick, S., Shanmugam, G., Kannan, V., Sridhar, B., Nehru, K. & Brahadeeswaran, S. (2015). Opt. Mater. 49, 158–170.  CrossRef Google Scholar
Return to citationTurner, M., McKinnon, J., Wolff, S., Grimwood, D., Spackman, P., Jayatilaka, D. & Spackman, M. (2017). University of Western Australia.  Google Scholar
Return to citationTyagi, N., Sinha, N., Yadav, H. & Kumar, B. (2016). RSC Adv. 6, 24565–24576.  Web of Science CSD CrossRef CAS Google Scholar
Return to citationZhao, Y., Sun, B., Jia, L., Wang, Y., Wang, M., Yang, H., Qiao, Y., Gong, J. & Tang, W. (2020). Cryst. Growth Des. 20, 3747–3761.  CrossRef Google Scholar

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