research communications\(\def\hfill{\hskip 5em}\def\hfil{\hskip 3em}\def\eqno#1{\hfil {#1}}\)

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ISSN: 2056-9890

A second monoclinic polymorph of 2,3-di­phenyl­pyrazine

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aDepartment of Chemistry, College of Science and Arts, King Abdulaziz University, Rabigh 21911, Saudi Arabia, bDepartment of Chemistry, Rabigh College of Science and Arts, King Abdulaziz University, Jeddah 21589, Saudi Arabia, cDepartment of Chemistry, Faculty of Pure and Applied Sciences, International University of Africa, Khartoum 2469, Sudan, dDepartment of Physics, Hacettepe University, 06800 Beytepe, Ankara, Türkiye, and eEaStCHEM School of Chemistry, University of St Andrews, Fife, KY16 9ST, United Kingdom
*Correspondence e-mail: [email protected]

Edited by W. T. A. Harrison, University of Aberdeen, United Kingdom (Received 3 December 2025; accepted 18 January 2026; online 23 January 2026)

The title com­pound, C16H12N2 (I), crystallizes in the space group P21/c with one mol­ecule in the asymmetric unit, in which the dihedral angles between the planes of the pyrazine ring and pendant phenyl rings are 53.12 (3) and 33.28 (3)°. In the crystal, pairwise C—H⋯N hy­dro­gen bonds link the mol­ecules into centrosymmetric dimers and aromatic ππ stacking inter­actions between the pyrazine rings of adjacent mol­ecules and C—H⋯π inter­actions help to consolidatate the packing. Compound I is a polymorph of the previously reported form of 2,3-di­phenyl­pyrazine [Kitano et al. (1983View full citation). Acta Cryst. C39, 136–139], which crystallizes in the space group C2/c with two mol­ecules in the asymmetric unit. The Hirshfeld surfaces and energy frameworks of the two polymorphs are com­pared and the bonding modes of the mol­ecules as ligands are surveyed.

1. Chemical context

The title com­pound I belongs to the class of organic com­pounds known as pyrazines or 1,4-diazines (Mason, 1887View full citation; Ohta et al., 1982View full citation). Pyrazine derivatives are of inter­est due to their pharmaceutical activities and natural occurence (Sammes, 1975View full citation; Cheeseman & Werstiuk, 1972View full citation). The syntheses and reactivities of pyrazine analogues have been investigated by Akita & Ohta (1982View full citation). Currently, our research focuses on the syntheses, reactivities and anti­cancer activities of a variety of cyclic and acyclic imine (C=N)-type com­pounds (e.g. Eltayeb et al., 2025View full citation) and the crystal structure determination of I was undertaken as part of these studies. Compound I is a polymorph of the previously reported form of 2,3-di­phenyl­pyrazine (Kitano et al., 1983View full citation) with Cambridge Structural Database (CSD; Groom et al., 2016View full citation) refcode BOHPOD in the space group C2/c with two mol­ecules in the asymmetric unit.

[Scheme 1]

2. Structural commentary

Compound I crystallizes in the space group P21/c with one mol­ecule in the asymmetric unit (Fig. 1[link]). It contains a pyrazine ring, A (N1/N4/C2–C6), and pendant phenyl rings, B (C7–C12) and C (C13–C18), oriented at dihedral angles of A/B = 53.12 (3)°, A/C = 33.28 (3)° and B/C = 64.72 (3)°. The B and C rings are rotated in the same sense from the A ring plane due to steric hinderence between them and the C7—C2—C3—C13 torsion angle is −12.78 (16)°. The pyrazine ring in I is distinctly twisted, with an r.m.s. deviation of 0.043 Å for the six atoms and C6—N1—C2—C3 and C6—C5—N4—C3 torsion angles of 4.82 (15) and 2.75 (16)°, respectively.

[Figure 1]
Figure 1
The mol­ecular structure of I, showing displacement ellipsoids at the 50% probability level.

3. Supra­molecular features

In the crystal of I, pairwise C6—H6⋯N1i hy­dro­gen bonds (Table 1[link]) link the mol­ecules into centrosymmetric dimers (Fig. 2[link]) enclosing R22(6) loops. Aromatic ππ stacking inter­actions between the pyrazine rings of adjacent mol­ecules, with an inter-centroid distance of 3.5711 (6) Å (slippage = 1.213 Å), and C—H⋯π inter­actions (Table 1[link]) help to consolidate the crystal packing. In polymorph BOPHOD, only directional C—H⋯π inter­actions are present and the densities of I and BOPHOD of 1.278 and 1.233 Mg m−3, respectively, suggest that I is the more stable.

Table 1
Hydrogen-bond geometry (Å, °)

Cg2 and Cg3 are the centroids of the C7–C12 and C13–C18 rings, respectively.

D—H⋯A D—H H⋯A DA D—H⋯A
C6—H6⋯N1i 0.95 2.52 3.3740 (15) 149
C12—H12⋯Cg3ii 0.95 2.97 3.7734 (12) 143
C16—H16⋯Cg2iii 0.95 2.99 3.8974 (13) 159
Symmetry codes: (i) Mathematical equation; (ii) Mathematical equation; (iii) Mathematical equation.
[Figure 2]
Figure 2
A partial packing diagram of I, showing an inversion dimer linked by pairwise C—H⋯N hy­dro­gen bonds (dashed lines). The other H atoms have been omitted for clarity.

4. Hirshfeld surface analysis

Hirshfeld surface analyses for I and II {catena-poly[[(μ2-2,3-di­phenyl­pyrazine)­silver(I)] tetra­fluoro­borate nitro­methane solvate]; CSD refcode EQOYIS; Schultheiss et al., 2003View full citation} were carried out using CrystalExplorer (Version 17.5; Spackman et al., 2021View full citation; Spackman et al., 2008View full citation; McKinnon et al., 2007View full citation; Turner et al., 2015View full citation). The Hirshfeld surface for I is shown in Fig. 3[link], where the bright-red spots correspond to the respective donors and acceptors noted above. The Hirshfeld surfaces for the two mol­ecules in BOHPOD are shown in Figs. S1(a) and S1(b) in the supporting information. The contact-type per­cen­tages from the two-dimensional fingerprint plot for I (Fig. 4[link]) and II (Figs. S3) are listed in Table 2[link]. These data show that the contact per­cen­tages are similar, with H⋯H and C⋯H/H⋯C dominating in each case.

Table 2
Comparison of the contact-type per­cen­tages for title com­pound I and BOHPOD, where the asymmetric unit contains two crystallographically independent mol­ecules, A and B

Contact I BOHPOD (A) BOHPOD (B)
H⋯H 54.0 47.7 55.1
H⋯C/C⋯H 30.0 34.1 31.6
H⋯N/N⋯H 9.7 14.7 12.2
C⋯C 2.7 1.5 0.8
N⋯N 1.8 0.1 0.0
C⋯N/N⋯C 1.7 1.9 0.3
[Figure 3]
Figure 3
The three-dimensional Hirshfeld surface of I plotted over dnorm in the range from −0.17 to 1.34 a.u.
[Figure 4]
Figure 4
Two-dimensional fingerprint plots for I, showing (a) all inter­actions, and delineated into the different contact types (b)–(g).

5. Inter­action energy calculations and energy frameworks

The CE-B3LYP/6-31G(d,p) energy model available in CrystalExplorer was used to calculate the inter­molecular inter­action energies in I. The inter­action energies (in kJ mol−1) were calculated to be −7.6 (Eele), −2.4 (Epol), −40.4 (Edis), +27.0 (Erep) and −28.3 (Etot) for the C6—H6⋯N1i hy­dro­gen-bond inter­action. Energy frameworks were constructed for Eele (red cylinders), Edis (green cylinders) and Etot (blue cylinders) [Figs. 5[link](a), 5(b) and 5(c)], and their evaluation indicate that the stabilization is dominated by dispersion energy contributions in the crystal structure of I. A similar calculation for BOHPOD (Figs. S4 and S5) indicates that the stabilization is also dominated by the dispersion energy contributions.

[Figure 5]
Figure 5
The energy frameworks for a cluster of mol­ecules of I, viewed down the a-axis direction, showing (a) electrostatic energy, (b) dispersion energy and (c) total energy diagrams. The cylindrical radius is proportional to the relative strength of the corresponding energies and they were adjusted to the same scale factor of 80 with a cut-off value of 5 kJ mol−1 within 2 × 2 × 2 unit cells.

6. Database survey

A survey of the Cambridge Structural Database (CSD, July 2025 update; Groom et al., 2016View full citation) revealed several structures where 2,3-di­phenyl­pyrazine can act as a ligand, either N-bonded or N,C-bonded, or as an anion. They include refcode BOHPOD (Kitano et al., 1983View full citation), II (EQOYIS; Schultheiss et al., 2003View full citation), III (HABSAI; Hrovat et al., 2020View full citation), IV (IFELOX; Zhu et al., 2018View full citation), V (IQUJAJ; Shi et al., 2025View full citation), VI (KAQHES; Luo et al., 2017View full citation), VII (LEXDAW; Tian et al., 2018View full citation), VIII (LEXDEA; Tian et al., 2018View full citation), IX (LEXDIE; Tian et al., 2018View full citation), X (LEXFEC; Tian et al., 2018View full citation), XI (LEXFIG; Tian et al., 2018View full citation), XII (REJLAW; Tian et al., 2016View full citation), XIII (REJLIE; Tian et al., 2016View full citation) and XIV (VIBXAF; Steel & Caygill, 1990View full citation). The dihedral angles between the central and pendant rings for these structures are given in the supporting information.

7. Synthesis and crystallization

Ethyl­enedi­amine (60.1 mg, 1.0 mmol) was added to a solution of benzil (210.2 mg, 1.0 mmol) in ethanol (50 ml). The reaction mixture was refluxed for 4 h, cooled to room tem­per­a­ture for precipitation and then filtered. Yellow crystals of I suitable for X-ray analysis were obtained by slow evaporation of an ethanol solution (yield 88%; m.p. 115–116 °C). Elemental analysis calculated (%) for C16H12N2: C 82.73, H 5.21, N 12.06; found: C 82.75, H 5.19, N 12.08. The report of Kitano et al. (1983View full citation) unfortunately does not mention the synthesis or (re)crystallization conditions for II.

8. Refinement

Crystal data, data collection and structure refinement details are summarized in Table 3[link]. The H-atom positions were calculated geometrically (C—H = 0.95 Å) and refined using a riding model by applying the constraint Uiso(H) = 1.2Ueq(C).

Table 3
Experimental details

Crystal data
Chemical formula C16H12N2
Mr 232.28
Crystal system, space group Monoclinic, P21/c
Temperature (K) 173
a, b, c (Å) 6.2885 (2), 25.4882 (9), 7.5554 (3)
β (°) 94.403 (4)
V3) 1207.43 (8)
Z 4
Radiation type Mo Kα
μ (mm−1) 0.08
Crystal size (mm) 0.22 × 0.09 × 0.02
 
Data collection
Diffractometer Rigaku XtaLAB P200K
Absorption correction Multi-scan (CrysAlis PRO; Rigaku OD, 2024View full citation)
Tmin, Tmax 0.812, 1.000
No. of measured, independent and observed [I > 2σ(I)] reflections 26279, 3011, 2387
Rint 0.031
(sin θ/λ)max−1) 0.696
 
Refinement
R[F2 > 2σ(F2)], wR(F2), S 0.039, 0.097, 1.03
No. of reflections 3011
No. of parameters 163
H-atom treatment H-atom parameters constrained
Δρmax, Δρmin (e Å−3) 0.21, −0.17
Computer programs: CrysAlis PRO (Rigaku OD, 2024View full citation), SHELXT2018 (Sheldrick, 2015aView full citation), SHELXL2019 (Sheldrick, 2015bView full citation) and OLEX2 (Dolomanov et al., 2009View full citation).

Supporting information


Computing details top

2,3-Diphenylpyrazine top
Crystal data top
C16H12N2F(000) = 488
Mr = 232.28Dx = 1.278 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
a = 6.2885 (2) ÅCell parameters from 7919 reflections
b = 25.4882 (9) Åθ = 2.7–29.0°
c = 7.5554 (3) ŵ = 0.08 mm1
β = 94.403 (4)°T = 173 K
V = 1207.43 (8) Å3Prism, colourless
Z = 40.22 × 0.09 × 0.02 mm
Data collection top
Rigaku XtaLAB P200K
diffractometer
3011 independent reflections
Radiation source: Rotating Anode, Rigaku FR-X2387 reflections with I > 2σ(I)
Rigaku Osmic Confocal Optical System monochromatorRint = 0.031
Detector resolution: 5.8140 pixels mm-1θmax = 29.6°, θmin = 2.8°
shutterless scansh = 88
Absorption correction: multi-scan
(CrysAlis PRO; Rigaku OD, 2024)
k = 3335
Tmin = 0.812, Tmax = 1.000l = 710
26279 measured reflections
Refinement top
Refinement on F2Primary atom site location: dual
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.039H-atom parameters constrained
wR(F2) = 0.097 w = 1/[σ2(Fo2) + (0.0426P)2 + 0.2327P]
where P = (Fo2 + 2Fc2)/3
S = 1.03(Δ/σ)max < 0.001
3011 reflectionsΔρmax = 0.21 e Å3
163 parametersΔρmin = 0.17 e Å3
0 restraints
Special details top

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
N10.22049 (15)0.45593 (4)0.09624 (13)0.0358 (2)
N40.56788 (15)0.49704 (3)0.29880 (12)0.0332 (2)
C20.37217 (16)0.42424 (4)0.17179 (14)0.0281 (2)
C30.54118 (16)0.44465 (4)0.28378 (13)0.0274 (2)
C50.42219 (19)0.52761 (4)0.21441 (14)0.0359 (3)
H50.4412880.5645710.2189550.043*
C60.24486 (19)0.50752 (4)0.12082 (16)0.0380 (3)
H60.1374280.5307750.0726210.046*
C70.34590 (17)0.36787 (4)0.12216 (13)0.0293 (2)
C80.50968 (18)0.34009 (4)0.05075 (15)0.0360 (3)
H80.6434710.3565360.0392070.043*
C90.4783 (2)0.28844 (5)0.00368 (16)0.0430 (3)
H90.5900110.2698560.0538310.052*
C100.2851 (2)0.26396 (4)0.01483 (16)0.0444 (3)
H100.2644470.2285050.0212800.053*
C110.1226 (2)0.29118 (5)0.08586 (17)0.0441 (3)
H110.0099440.2743300.0994170.053*
C120.15138 (18)0.34301 (4)0.13762 (15)0.0359 (3)
H120.0373610.3617000.1840200.043*
C130.69606 (16)0.41323 (4)0.39840 (13)0.0275 (2)
C140.89935 (17)0.43358 (4)0.44188 (15)0.0331 (2)
H140.9403740.4654690.3889990.040*
C151.04192 (18)0.40806 (5)0.56072 (17)0.0411 (3)
H151.1795580.4225120.5891690.049*
C160.9848 (2)0.36156 (5)0.63825 (17)0.0433 (3)
H161.0828150.3439620.7197840.052*
C170.7840 (2)0.34079 (4)0.59647 (16)0.0405 (3)
H170.7443290.3088660.6499050.049*
C180.63994 (18)0.36615 (4)0.47724 (15)0.0333 (2)
H180.5026640.3514560.4491070.040*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
N10.0348 (5)0.0320 (5)0.0400 (5)0.0054 (4)0.0009 (4)0.0013 (4)
N40.0421 (5)0.0245 (4)0.0328 (5)0.0017 (4)0.0023 (4)0.0005 (3)
C20.0291 (5)0.0261 (5)0.0291 (5)0.0015 (4)0.0031 (4)0.0009 (4)
C30.0309 (5)0.0243 (5)0.0274 (5)0.0001 (4)0.0050 (4)0.0007 (4)
C50.0501 (7)0.0232 (5)0.0347 (6)0.0040 (4)0.0054 (5)0.0012 (4)
C60.0423 (6)0.0312 (6)0.0404 (6)0.0101 (5)0.0029 (5)0.0037 (5)
C70.0332 (5)0.0270 (5)0.0267 (5)0.0013 (4)0.0045 (4)0.0001 (4)
C80.0378 (6)0.0324 (6)0.0375 (6)0.0024 (5)0.0010 (5)0.0015 (5)
C90.0555 (7)0.0334 (6)0.0398 (7)0.0110 (5)0.0012 (6)0.0041 (5)
C100.0628 (8)0.0265 (5)0.0418 (7)0.0010 (5)0.0100 (6)0.0042 (5)
C110.0454 (7)0.0368 (6)0.0485 (7)0.0098 (5)0.0073 (6)0.0015 (5)
C120.0344 (6)0.0340 (6)0.0382 (6)0.0014 (4)0.0036 (5)0.0031 (5)
C130.0310 (5)0.0251 (5)0.0264 (5)0.0004 (4)0.0010 (4)0.0035 (4)
C140.0334 (5)0.0291 (5)0.0368 (6)0.0022 (4)0.0032 (5)0.0039 (4)
C150.0328 (6)0.0433 (7)0.0456 (7)0.0012 (5)0.0062 (5)0.0091 (5)
C160.0488 (7)0.0408 (6)0.0382 (6)0.0118 (5)0.0108 (5)0.0029 (5)
C170.0549 (7)0.0286 (5)0.0370 (6)0.0036 (5)0.0024 (5)0.0035 (5)
C180.0374 (6)0.0275 (5)0.0344 (6)0.0028 (4)0.0008 (5)0.0001 (4)
Geometric parameters (Å, º) top
N1—C21.3434 (13)C10—H100.9500
N1—C61.3352 (15)C10—C111.3776 (18)
N4—C31.3495 (13)C11—H110.9500
N4—C51.3280 (14)C11—C121.3856 (16)
C2—C31.4065 (14)C12—H120.9500
C2—C71.4908 (14)C13—C141.3953 (14)
C3—C131.4867 (14)C13—C181.3970 (15)
C5—H50.9500C14—H140.9500
C5—C61.3728 (17)C14—C151.3819 (16)
C6—H60.9500C15—H150.9500
C7—C81.3923 (15)C15—C161.3817 (18)
C7—C121.3905 (15)C16—H160.9500
C8—H80.9500C16—C171.3832 (18)
C8—C91.3888 (16)C17—H170.9500
C9—H90.9500C17—C181.3873 (16)
C9—C101.3824 (18)C18—H180.9500
C6—N1—C2117.58 (10)C11—C10—H10120.1
C5—N4—C3117.61 (9)C10—C11—H11119.8
N1—C2—C3120.82 (9)C10—C11—C12120.35 (11)
N1—C2—C7114.29 (9)C12—C11—H11119.8
C3—C2—C7124.88 (9)C7—C12—H12119.8
N4—C3—C2120.00 (9)C11—C12—C7120.50 (11)
N4—C3—C13114.35 (9)C11—C12—H12119.8
C2—C3—C13125.60 (9)C14—C13—C3118.97 (9)
N4—C5—H5118.9C14—C13—C18118.41 (10)
N4—C5—C6122.12 (10)C18—C13—C3122.37 (9)
C6—C5—H5118.9C13—C14—H14119.5
N1—C6—C5121.26 (10)C15—C14—C13120.99 (10)
N1—C6—H6119.4C15—C14—H14119.5
C5—C6—H6119.4C14—C15—H15119.9
C8—C7—C2121.11 (10)C16—C15—C14120.16 (11)
C12—C7—C2119.95 (9)C16—C15—H15119.9
C12—C7—C8118.85 (10)C15—C16—H16120.2
C7—C8—H8119.9C15—C16—C17119.62 (11)
C9—C8—C7120.28 (11)C17—C16—H16120.2
C9—C8—H8119.9C16—C17—H17119.7
C8—C9—H9119.9C16—C17—C18120.59 (11)
C10—C9—C8120.26 (11)C18—C17—H17119.7
C10—C9—H9119.9C13—C18—H18119.9
C9—C10—H10120.1C17—C18—C13120.23 (10)
C11—C10—C9119.74 (11)C17—C18—H18119.9
N1—C2—C3—N48.41 (15)C5—N4—C3—C13173.21 (9)
N1—C2—C3—C13168.90 (10)C6—N1—C2—C34.82 (15)
N1—C2—C7—C8125.29 (11)C6—N1—C2—C7173.66 (10)
N1—C2—C7—C1251.08 (13)C7—C2—C3—N4169.91 (9)
N4—C3—C13—C1429.59 (13)C7—C2—C3—C1312.78 (16)
N4—C3—C13—C18144.59 (10)C7—C8—C9—C100.88 (18)
N4—C5—C6—N16.40 (18)C8—C7—C12—C111.19 (16)
C2—N1—C6—C52.32 (16)C8—C9—C10—C110.69 (18)
C2—C3—C13—C14152.97 (10)C9—C10—C11—C120.44 (18)
C2—C3—C13—C1832.85 (16)C10—C11—C12—C71.39 (18)
C2—C7—C8—C9176.47 (10)C12—C7—C8—C90.06 (16)
C2—C7—C12—C11177.64 (10)C13—C14—C15—C160.21 (18)
C3—N4—C5—C62.75 (16)C14—C13—C18—C170.35 (16)
C3—C2—C7—C853.13 (15)C14—C15—C16—C170.12 (18)
C3—C2—C7—C12130.50 (11)C15—C16—C17—C180.15 (18)
C3—C13—C14—C15174.09 (10)C16—C17—C18—C130.27 (18)
C3—C13—C18—C17173.86 (10)C18—C13—C14—C150.32 (16)
C5—N4—C3—C24.39 (15)
Hydrogen-bond geometry (Å, º) top
Cg2 and Cg3 are the centroids of the C7–C12 and C13–C18 rings, respectively.
D—H···AD—HH···AD···AD—H···A
C6—H6···N1i0.952.523.3740 (15)149
C12—H12···Cg3ii0.952.973.7734 (12)143
C16—H16···Cg2iii0.952.993.8974 (13)159
Symmetry codes: (i) x, y+1, z; (ii) x1, y, z; (iii) x+1, y, z+1.
Comparison of the percentages for title compound I and BOHPOD, where its asymmetric unit contains two crystallographically independent molecules, A and B top
Contact(I)BOHPOD (A)BOHPOD (B)
H···H54.047.755.1
H···C/C···H30.034.131.6
H···N/N···H9.714.712.2
C···C2.71.50.8
N···N1.80.10.0
C···N/N···C1.71.90.3
Comparison of the dihedral angles (°) between the central and pendant rings for some structures top
Compoundαααααααα
I53.12 (3)33.28 (3)
III56.5657.73
V13.5854.30
VI24.0922.75
VII62.4568.8343.7755.1242.8551.1757.2351.87
VIII56.4730.5956.3372.2244.8466.4252.5953.31
IX53.2550.38
X66.7265.0061.3754.5757.7646.7152.7864.28
XI57.6931.2156.6754.0974.6623.83

Acknowledgements

The authors would like to thank D. B. Cordes for fruitful discussions. TH is grateful to Hacettepe University Scientific Research Project Unit.

Funding information

Funding for this research was provided by: Hacettepe Üniversitesi (grant No. 013 D04 602 004).

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