research communications
accessand Hirshfeld surface analyses, interaction energy calculations and energy frameworks of 2-(anthracen-10-yl)-1H-benzo[d]imidazole
aDepartment of Chemistry, Rabigh College of Science and Arts, King Abdulaziz University, Jeddah 21589, Saudi Arabia, bDepartment of Chemistry, Faculty of Pure and Applied Sciences, International University of Africa, Khartoum 2469, Sudan, cKing Fahd Medical Research Center, King Abdulaziz University, Jeddah 21589, Saudi Arabia, dDepartment of Physics, Hacettepe University, 06800 Beytepe, Ankara, Türkiye, and eEaStCHEM School of Chemistry, University of St Andrews, Fife KY16 9ST, United Kingdom
*Correspondence e-mail: [email protected]
The benzimidazole and anthracene moieties in the title compound, C21H14N2, are oriented at a dihedral angle of 46.00 (2)°. In the crystal, N—H⋯N hydrogen bonds link the molecules into infinite chains along the b-axis direction. In addition, C—H⋯π interactions contribute to the consolidation of the packing. A Hirshfeld surface analysis of the indicates that the most important contributions to the crystal packing are from H⋯H (47.2%) and H⋯/C⋯H (39.4%) interactions. An energy-framework calculation indicates that the electrostatic and dispersion energies are the most important contributors to the packing.
Keywords: 2-(anthracen-10-yl)-1H-benzo[d]imidazole; crystal structure; hydrogen bond; π-stacking; Hirshfeld surface.
CCDC reference: 2518388
1. Chemical context
Benzimidazole, a nitrogen-containing aromatic heterocycle, is a key component in different biologically active molecules (Bansal & Silakari, 2012
) encompassing a broad spectrum of activities, including anticancer (Chen et al., 2010
; Sontakke et al., 2015
), antiviral (Li et al., 2006
), antimicrobial (Sharma et al., 2009
) and antifungal (Goker et al., 2002
) activities. Different chemotherapeutic anticancer drugs interact directly with DNA or prevent the appropriate relaxation of DNA through inhibition of topoisomerases (Chen & Liu, 1994
). Currently, our research work focuses on the synthesis, characterization and anticancer evaluation of a variety of acyclic and cyclic imine-type compounds (Eltayeb et al., 2020a
,b
, 2025
; Lasri et al., 2018
, 2023a
,b
, 2024
, 2025
). Herein we report the synthesis, molecular and crystal structure, Hirshfeld surface analysis, interaction energy calculations and energy frameworks of the title compound (I)
.
2. Structural commentary
The title compound contains benzimidazole and anthracene ring systems (Fig. 1
). The benzimidazole moiety is essentially planar [r.m.s. deviation = 0.013 (1) Å] with a maximum deviation of 0.0195 (12) Å for atom C5. In the anthracene moiety, the almost planar A (C11–C16), B (C10/C11/C16–C18/C23) and C (C18–C23) rings are oriented at dihedral angles of A/B = 2.48 (4)°, A/C = 5.67 (4)° and B/C = 3.20 (4)° and are thus nearly coplanar. The dihedral angle between the mean planes of the benzimidazole and anthracene ring systems is 46.00 (2)°. There are no unusual bond lengths or interbond angles in the molecule.
| Figure 1 Molecular structure of the title molecule with atom-numbering scheme and 50% probability ellipsoids. |
3. Supramolecular features
In the crystal, N—H⋯N hydrogen bonds (Table 1
) link the molecules into infinite chains along the b-axis direction (Fig. 2
). The C—H⋯π interactions (Table 1
) help to consolidate the crystal packing. Despite the presence of aromatic rings, there are no π–π stacking interactions. The shortest centroid-to-centroid distances are 4.1943 (7) Å [for the A and B rings, α = 32.09 (3)°], 4.3273 (7) Å [for the (C3–C8) and C rings, α = 43.98 (4)°] and 4.4415 (7) Å [for the (N2/N9/C1/C3/C8) and C rings, α = 44.82 (4)°].
|
| Figure 2 A partial packing diagram of the title compound. Intermolecular N—H⋯N hydrogen bonds are shown as dashed lines. H atoms not involved in these interactions have been omitted for clarity. |
A Hirshfeld surface (HS) analysis was carried out using Crystal Explorer 17.5 (Spackman et al., 2021
) to clarify the intermolecular interactions in (I)
. The Hirshfeld surface plotted over dnorm is shown in Fig. 3
, where the bright-red spots correspond to the respective donors and/or acceptors; they also appear as blue and red regions in Fig. 4
corresponding to positive and negative potentials (Spackman et al., 2008
). The absence of π–π stacking interactions is indicated by the absence of the adjacent red and blue triangles in the rings (Fig. 5
a and b). On the other hand, the C—H⋯π interactions (Table 1
) are represented as red π-holes, which are related to the electron ring interactions between C—H groups with the centroid of the B (C3–C8) and C (C10/C11/C16–C18/C23) rings of neighbouring molecules (Fig. 5
a and b). According to the two-dimensional fingerprint plots (McKinnon et al., 2007
), the intermolecular H⋯H and H⋯C/C⋯H (Table 2
) contacts make the most important contributions to the HS (47.2% and 39.8%, respectively) (Fig. 6
).
|
| Figure 3 View of the three-dimensional Hirshfeld surface of the title compound plotted over dnorm. |
| Figure 4 View of the Hirshfeld surface of the title compound plotted over electrostatic potential energy using the STO-3 G basis set at the Hartree–Fock level of theory. Hydrogen-bond donors and acceptors are shown as blue and red regions around the atoms corresponding to positive and negative potentials, respectively. |
| | Figure 5 Hirshfeld surface of the title compound for two orientations plotted over shape-index. |
| Figure 6 The full two-dimensional fingerprint plots for the title compound, showing (a) all interactions, and delineated into (b) H⋯H, (c) H⋯C/C⋯H, (d) H⋯N/N⋯H and (e) C⋯C interactions. The di and de values are the closest internal and external distances (in Å) from given points on the Hirshfeld surface. |
4. Interaction energy calculations and energy frameworks
The CE–B3LYP/6–31G(d,p) energy model available in Crystal Explorer 17.5 (Spackman et al., 2021
) was used to calculate the intermolecular interaction energies. Hydrogen-bonding interaction energies (in kJ mol−1) for N9—H9⋯N2 were calculated to be −57.9 (Eele), −16.4 (Epol), −60.9 (Edis), 86.9 (Erep) and −72.7 (Etot). Energy frameworks combine the calculation of intermolecular interaction energies with a graphical representation of their magnitude (Turner et al., 2015
). Energy frameworks were constructed for Eele (red cylinders), Edis (green cylinders) and Etot (blue cylinders) (Fig. 7
a, b and c), and their evaluation indicates that the stabilization is dominated equally via the electrostatic and dispersion energy contributions in the of (I)
.
| | Figure 7 The energy frameworks for a cluster of molecules of the title compound viewed down the a-axis showing the (a) electrostatic energy, (b) dispersion energy and (c) total energy diagrams. The cylindrical radius is proportional to the relative strength of the corresponding energies and they were adjusted to the same scale factor of 80 with cut-off value of 5 kJ mol−1 within 2 × 2 × 2 unit cells. |
5. Synthesis and crystallization
To a solution of 9-anthracenecarboxaldehyde (206.2 mg, 1.0 mmol) in ethanol (50 ml) was added 1,2-phenylenediamine (108.1 mg, 1.0 mmol) and the reaction mixture was refluxed for 4 h. The reaction was cooled to room temperature for precipitation, and then filtered. Yellow crystals suitable for X-ray analysis were obtained by slow evaporation of an ethanol solution. Yield: 70%. M.p. 534–536 K. IR (cm−1): 1227, 1401, 1619, 2917, 3050. 1H NMR (DMSO-d6): δ 7.31 (s, 2H), 7.50 (m, 4H), 7.71 (d, J = 8.1 Hz, 4H), 8.18 (d, J = 7.2 Hz, 2H), 8.79 (s, 1H), 13.02 (bs, 1H). 13C NMR (DMSO-d6): δ 121.9, 125.4, 125.6, 126.6, 128.3, 128.7, 130.4, 130.5, 149.4. Elemental analysis calculated for C21H14N2 (294.36), C, 85.69; H, 4.79; N, 9.52%. Found: C, 85.68, H, 4.77, N, 9.51%. This compound has been previously synthesized by Sontakke et al. (2015
) and Barwiolek et al. (2019
).
6. Refinement
Crystal data, data collection and structure details are summarized in Table 2
. The N-bound H atom was located in a difference Fourier map and was refined isotropically. The C-bound H atoms were calculated geometrically at a distance of 0.95 Å (for aromatic CH) and refined using a riding model by applying the constraint Uiso(H) = 1.2Ueq(C).
Supporting information
CCDC reference: 2518388
contains datablock I. DOI: https://doi.org/10.1107/S2056989025011594/vm2321sup1.cif
Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S2056989025011594/vm2321Isup2.hkl
| C21H14N2 | Dx = 1.326 Mg m−3 |
| Mr = 294.34 | Mo Kα radiation, λ = 0.71073 Å |
| Orthorhombic, Pbca | Cell parameters from 23539 reflections |
| a = 8.30341 (17) Å | θ = 2.2–28.5° |
| b = 9.5845 (2) Å | µ = 0.08 mm−1 |
| c = 37.0413 (8) Å | T = 173 K |
| V = 2947.90 (11) Å3 | Plate, yellow |
| Z = 8 | 0.11 × 0.1 × 0.01 mm |
| F(000) = 1232 |
| Rigaku XtaLAB P200K diffractometer | 3810 independent reflections |
| Radiation source: Rotating Anode, Rigaku FR-X | 3005 reflections with I > 2σ(I) |
| Rigaku Osmic Confocal Optical System monochromator | Rint = 0.039 |
| Detector resolution: 5.8140 pixels mm-1 | θmax = 29.7°, θmin = 2.2° |
| shutterless scans | h = −10→11 |
| Absorption correction: multi-scan (CrysAlisPro; Rigaku OD, 2024) | k = −11→12 |
| Tmin = 0.854, Tmax = 1.000 | l = −49→50 |
| 59653 measured reflections |
| Refinement on F2 | Primary atom site location: dual |
| Least-squares matrix: full | Hydrogen site location: mixed |
| R[F2 > 2σ(F2)] = 0.041 | H atoms treated by a mixture of independent and constrained refinement |
| wR(F2) = 0.103 | w = 1/[σ2(Fo2) + (0.0444P)2 + 0.8465P] where P = (Fo2 + 2Fc2)/3 |
| S = 1.05 | (Δ/σ)max = 0.001 |
| 3810 reflections | Δρmax = 0.23 e Å−3 |
| 212 parameters | Δρmin = −0.22 e Å−3 |
| 1 restraint |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Hydrogen atom on N9 was located from the Fmap and refined isotropically with N—H distance restrained to 0.98 Å |
| x | y | z | Uiso*/Ueq | ||
| N2 | 0.84627 (11) | 0.24750 (9) | 0.66012 (2) | 0.0248 (2) | |
| N9 | 0.77061 (11) | 0.47141 (9) | 0.66026 (2) | 0.0242 (2) | |
| H9 | 0.7166 (17) | 0.5562 (14) | 0.6545 (4) | 0.047 (4)* | |
| C1 | 0.75069 (13) | 0.34240 (11) | 0.64528 (3) | 0.0227 (2) | |
| C3 | 0.93528 (13) | 0.31880 (11) | 0.68609 (3) | 0.0244 (2) | |
| C4 | 1.05794 (14) | 0.27224 (12) | 0.70899 (3) | 0.0309 (3) | |
| H4 | 1.092555 | 0.177772 | 0.708690 | 0.037* | |
| C5 | 1.12702 (15) | 0.36837 (13) | 0.73207 (3) | 0.0354 (3) | |
| H5 | 1.210908 | 0.339403 | 0.747813 | 0.043* | |
| C6 | 1.07597 (15) | 0.50770 (13) | 0.73274 (3) | 0.0349 (3) | |
| H6 | 1.125182 | 0.570561 | 0.749220 | 0.042* | |
| C7 | 0.95616 (14) | 0.55626 (12) | 0.71013 (3) | 0.0303 (3) | |
| H7 | 0.922156 | 0.650883 | 0.710563 | 0.036* | |
| C8 | 0.88755 (13) | 0.45913 (11) | 0.68660 (3) | 0.0241 (2) | |
| C10 | 0.63824 (13) | 0.31325 (11) | 0.61517 (3) | 0.0247 (2) | |
| C11 | 0.69459 (14) | 0.23639 (11) | 0.58494 (3) | 0.0281 (2) | |
| C12 | 0.85679 (16) | 0.18867 (12) | 0.58106 (3) | 0.0340 (3) | |
| H12 | 0.933298 | 0.209447 | 0.599360 | 0.041* | |
| C13 | 0.90366 (19) | 0.11377 (14) | 0.55153 (3) | 0.0447 (3) | |
| H13 | 1.012312 | 0.083653 | 0.549572 | 0.054* | |
| C14 | 0.7934 (2) | 0.08031 (15) | 0.52384 (4) | 0.0514 (4) | |
| H14 | 0.826830 | 0.024926 | 0.503930 | 0.062* | |
| C15 | 0.6404 (2) | 0.12719 (14) | 0.52571 (3) | 0.0470 (4) | |
| H15 | 0.567928 | 0.106712 | 0.506574 | 0.056* | |
| C16 | 0.58481 (16) | 0.20700 (12) | 0.55586 (3) | 0.0344 (3) | |
| C17 | 0.42855 (16) | 0.25784 (14) | 0.55726 (3) | 0.0381 (3) | |
| H17 | 0.357257 | 0.237922 | 0.537875 | 0.046* | |
| C18 | 0.37304 (14) | 0.33687 (13) | 0.58608 (3) | 0.0329 (3) | |
| C19 | 0.21431 (15) | 0.39448 (15) | 0.58616 (4) | 0.0426 (3) | |
| H19 | 0.145176 | 0.377682 | 0.566191 | 0.051* | |
| C20 | 0.16066 (15) | 0.47227 (16) | 0.61405 (4) | 0.0447 (3) | |
| H20 | 0.056231 | 0.512637 | 0.613230 | 0.054* | |
| C21 | 0.26038 (15) | 0.49346 (15) | 0.64446 (4) | 0.0416 (3) | |
| H21 | 0.220969 | 0.546298 | 0.664275 | 0.050* | |
| C22 | 0.41201 (14) | 0.43952 (13) | 0.64588 (3) | 0.0333 (3) | |
| H22 | 0.475211 | 0.453120 | 0.666965 | 0.040* | |
| C23 | 0.47781 (13) | 0.36291 (11) | 0.61628 (3) | 0.0275 (2) |
| U11 | U22 | U33 | U12 | U13 | U23 | |
| N2 | 0.0288 (5) | 0.0191 (4) | 0.0266 (4) | −0.0012 (4) | −0.0007 (4) | 0.0005 (3) |
| N9 | 0.0247 (5) | 0.0190 (4) | 0.0290 (5) | 0.0010 (4) | −0.0006 (4) | −0.0015 (4) |
| C1 | 0.0237 (5) | 0.0191 (5) | 0.0254 (5) | −0.0020 (4) | 0.0031 (4) | −0.0004 (4) |
| C3 | 0.0275 (5) | 0.0218 (5) | 0.0238 (5) | −0.0018 (4) | 0.0017 (4) | 0.0000 (4) |
| C4 | 0.0351 (6) | 0.0277 (6) | 0.0300 (6) | 0.0025 (5) | −0.0030 (5) | 0.0034 (4) |
| C5 | 0.0361 (6) | 0.0402 (7) | 0.0301 (6) | 0.0002 (5) | −0.0074 (5) | 0.0026 (5) |
| C6 | 0.0361 (6) | 0.0377 (7) | 0.0309 (6) | −0.0049 (5) | −0.0033 (5) | −0.0081 (5) |
| C7 | 0.0324 (6) | 0.0263 (5) | 0.0323 (6) | −0.0019 (5) | 0.0015 (5) | −0.0061 (4) |
| C8 | 0.0247 (5) | 0.0232 (5) | 0.0244 (5) | −0.0006 (4) | 0.0026 (4) | −0.0002 (4) |
| C10 | 0.0284 (5) | 0.0198 (5) | 0.0259 (5) | −0.0034 (4) | −0.0007 (4) | 0.0018 (4) |
| C11 | 0.0372 (6) | 0.0212 (5) | 0.0258 (5) | −0.0031 (5) | 0.0000 (5) | 0.0017 (4) |
| C12 | 0.0426 (7) | 0.0297 (6) | 0.0297 (6) | 0.0054 (5) | 0.0032 (5) | 0.0013 (5) |
| C13 | 0.0597 (9) | 0.0393 (7) | 0.0351 (7) | 0.0149 (7) | 0.0094 (6) | 0.0012 (5) |
| C14 | 0.0829 (12) | 0.0400 (8) | 0.0313 (7) | 0.0077 (8) | 0.0089 (7) | −0.0089 (6) |
| C15 | 0.0705 (10) | 0.0422 (8) | 0.0282 (6) | −0.0088 (7) | −0.0035 (6) | −0.0067 (5) |
| C16 | 0.0476 (7) | 0.0286 (6) | 0.0269 (5) | −0.0081 (5) | −0.0021 (5) | −0.0002 (4) |
| C17 | 0.0431 (7) | 0.0407 (7) | 0.0304 (6) | −0.0126 (6) | −0.0104 (5) | 0.0020 (5) |
| C18 | 0.0316 (6) | 0.0342 (6) | 0.0330 (6) | −0.0087 (5) | −0.0044 (5) | 0.0076 (5) |
| C19 | 0.0295 (6) | 0.0566 (8) | 0.0418 (7) | −0.0082 (6) | −0.0080 (5) | 0.0138 (6) |
| C20 | 0.0242 (6) | 0.0577 (9) | 0.0523 (8) | 0.0019 (6) | 0.0020 (6) | 0.0157 (7) |
| C21 | 0.0299 (6) | 0.0487 (8) | 0.0462 (7) | 0.0008 (6) | 0.0076 (6) | 0.0009 (6) |
| C22 | 0.0264 (6) | 0.0388 (7) | 0.0347 (6) | −0.0036 (5) | 0.0021 (5) | 0.0002 (5) |
| C23 | 0.0283 (5) | 0.0248 (5) | 0.0294 (5) | −0.0054 (4) | −0.0014 (4) | 0.0042 (4) |
| N2—C1 | 1.3263 (14) | C12—C13 | 1.3653 (17) |
| N2—C3 | 1.3924 (14) | C13—H13 | 0.9500 |
| N9—H9 | 0.952 (13) | C13—C14 | 1.412 (2) |
| N9—C1 | 1.3653 (13) | C14—H14 | 0.9500 |
| N9—C8 | 1.3816 (14) | C14—C15 | 1.350 (2) |
| C1—C10 | 1.4812 (14) | C15—H15 | 0.9500 |
| C3—C4 | 1.3986 (16) | C15—C16 | 1.4301 (17) |
| C3—C8 | 1.4023 (15) | C16—C17 | 1.3869 (19) |
| C4—H4 | 0.9500 | C17—H17 | 0.9500 |
| C4—C5 | 1.3815 (17) | C17—C18 | 1.3876 (18) |
| C5—H5 | 0.9500 | C18—C19 | 1.4290 (18) |
| C5—C6 | 1.4013 (18) | C18—C23 | 1.4389 (15) |
| C6—H6 | 0.9500 | C19—H19 | 0.9500 |
| C6—C7 | 1.3812 (17) | C19—C20 | 1.350 (2) |
| C7—H7 | 0.9500 | C20—H20 | 0.9500 |
| C7—C8 | 1.3968 (15) | C20—C21 | 1.4127 (19) |
| C10—C11 | 1.4196 (15) | C21—H21 | 0.9500 |
| C10—C23 | 1.4152 (16) | C21—C22 | 1.3620 (18) |
| C11—C12 | 1.4296 (17) | C22—H22 | 0.9500 |
| C11—C16 | 1.4390 (16) | C22—C23 | 1.4283 (16) |
| C12—H12 | 0.9500 | ||
| N2···C12 | 2.9836 (13) | C1···H12 | 2.61 |
| N9···N2i | 2.8185 (12) | C1···H22 | 2.65 |
| N9···C22 | 3.0403 (15) | C6···H21ii | 2.83 |
| N2···H12 | 2.39 | C7···H21ii | 2.78 |
| H9···N2i | 1.918 (13) | C22···H9 | 2.784 (14) |
| N9···H22 | 2.47 | H9···H22 | 2.28 |
| H9···C1i | 2.778 (13) | ||
| C1—N2—C3 | 105.51 (9) | C12—C13—H13 | 119.4 |
| C1—N9—H9 | 128.7 (9) | C12—C13—C14 | 121.12 (14) |
| C1—N9—C8 | 107.15 (9) | C14—C13—H13 | 119.4 |
| C8—N9—H9 | 124.2 (9) | C13—C14—H14 | 120.1 |
| N2—C1—N9 | 112.34 (9) | C15—C14—C13 | 119.85 (12) |
| N2—C1—C10 | 124.05 (9) | C15—C14—H14 | 120.1 |
| N9—C1—C10 | 123.59 (9) | C14—C15—H15 | 119.3 |
| N2—C3—C4 | 130.47 (10) | C14—C15—C16 | 121.46 (13) |
| N2—C3—C8 | 109.27 (9) | C16—C15—H15 | 119.3 |
| C4—C3—C8 | 120.24 (10) | C15—C16—C11 | 119.01 (12) |
| C3—C4—H4 | 121.2 | C17—C16—C11 | 119.72 (11) |
| C5—C4—C3 | 117.70 (11) | C17—C16—C15 | 121.26 (12) |
| C5—C4—H4 | 121.2 | C16—C17—H17 | 119.0 |
| C4—C5—H5 | 119.3 | C16—C17—C18 | 122.10 (11) |
| C4—C5—C6 | 121.40 (11) | C18—C17—H17 | 119.0 |
| C6—C5—H5 | 119.3 | C17—C18—C19 | 121.26 (11) |
| C5—C6—H6 | 119.1 | C17—C18—C23 | 119.46 (11) |
| C7—C6—C5 | 121.88 (11) | C19—C18—C23 | 119.27 (11) |
| C7—C6—H6 | 119.1 | C18—C19—H19 | 119.3 |
| C6—C7—H7 | 121.7 | C20—C19—C18 | 121.30 (12) |
| C6—C7—C8 | 116.59 (11) | C20—C19—H19 | 119.3 |
| C8—C7—H7 | 121.7 | C19—C20—H20 | 120.1 |
| N9—C8—C3 | 105.72 (9) | C19—C20—C21 | 119.75 (12) |
| N9—C8—C7 | 132.11 (10) | C21—C20—H20 | 120.1 |
| C7—C8—C3 | 122.17 (10) | C20—C21—H21 | 119.4 |
| C11—C10—C1 | 118.95 (10) | C22—C21—C20 | 121.20 (13) |
| C23—C10—C1 | 120.53 (9) | C22—C21—H21 | 119.4 |
| C23—C10—C11 | 120.51 (10) | C21—C22—H22 | 119.4 |
| C10—C11—C12 | 123.76 (10) | C21—C22—C23 | 121.27 (12) |
| C10—C11—C16 | 118.89 (11) | C23—C22—H22 | 119.4 |
| C12—C11—C16 | 117.33 (10) | C10—C23—C18 | 119.22 (10) |
| C11—C12—H12 | 119.4 | C10—C23—C22 | 123.73 (10) |
| C13—C12—C11 | 121.15 (12) | C22—C23—C18 | 117.05 (11) |
| C13—C12—H12 | 119.4 | ||
| N2—C1—C10—C11 | −46.69 (15) | C10—C11—C16—C17 | 2.15 (16) |
| N2—C1—C10—C23 | 134.18 (11) | C11—C10—C23—C18 | −1.16 (16) |
| N2—C3—C4—C5 | 179.14 (11) | C11—C10—C23—C22 | 179.29 (10) |
| N2—C3—C8—N9 | −0.86 (11) | C11—C12—C13—C14 | −0.3 (2) |
| N2—C3—C8—C7 | 179.87 (10) | C11—C16—C17—C18 | −0.14 (18) |
| N9—C1—C10—C11 | 131.47 (11) | C12—C11—C16—C15 | 2.81 (16) |
| N9—C1—C10—C23 | −47.65 (15) | C12—C11—C16—C17 | −176.28 (11) |
| C1—N2—C3—C4 | −177.46 (11) | C12—C13—C14—C15 | 2.5 (2) |
| C1—N2—C3—C8 | 0.92 (11) | C13—C14—C15—C16 | −2.0 (2) |
| C1—N9—C8—C3 | 0.46 (11) | C14—C15—C16—C11 | −0.7 (2) |
| C1—N9—C8—C7 | 179.63 (12) | C14—C15—C16—C17 | 178.41 (13) |
| C1—C10—C11—C12 | −2.26 (16) | C15—C16—C17—C18 | −179.21 (12) |
| C1—C10—C11—C16 | 179.42 (9) | C16—C11—C12—C13 | −2.37 (17) |
| C1—C10—C23—C18 | 177.95 (10) | C16—C17—C18—C19 | 176.68 (12) |
| C1—C10—C23—C22 | −1.60 (16) | C16—C17—C18—C23 | −2.53 (18) |
| C3—N2—C1—N9 | −0.64 (12) | C17—C18—C19—C20 | −179.47 (13) |
| C3—N2—C1—C10 | 177.71 (9) | C17—C18—C23—C10 | 3.16 (16) |
| C3—C4—C5—C6 | 0.28 (18) | C17—C18—C23—C22 | −177.26 (11) |
| C4—C3—C8—N9 | 177.72 (10) | C18—C19—C20—C21 | −2.4 (2) |
| C4—C3—C8—C7 | −1.55 (16) | C19—C18—C23—C10 | −176.07 (11) |
| C4—C5—C6—C7 | −0.92 (19) | C19—C18—C23—C22 | 3.51 (16) |
| C5—C6—C7—C8 | 0.31 (18) | C19—C20—C21—C22 | 1.6 (2) |
| C6—C7—C8—N9 | −178.15 (11) | C20—C21—C22—C23 | 1.8 (2) |
| C6—C7—C8—C3 | 0.91 (16) | C21—C22—C23—C10 | 175.24 (11) |
| C8—N9—C1—N2 | 0.12 (12) | C21—C22—C23—C18 | −4.32 (17) |
| C8—N9—C1—C10 | −178.24 (9) | C23—C10—C11—C12 | 176.86 (10) |
| C8—C3—C4—C5 | 0.91 (16) | C23—C10—C11—C16 | −1.46 (16) |
| C10—C11—C12—C13 | 179.28 (11) | C23—C18—C19—C20 | −0.26 (19) |
| C10—C11—C16—C15 | −178.76 (11) |
| Symmetry codes: (i) −x+3/2, y+1/2, z; (ii) x+1, y, z. |
| Cg1, Cg2, Cg3 and Cg4 are the centroids of the (N2/N9/C1/C3–C8), (C10/C11/C16–C21), (C10/C11/C16–C18,C23) and (C3–C8) rings, respectively. |
| D—H···A | D—H | H···A | D···A | D—H···A |
| N9—H9···N2i | 0.95 (1) | 1.92 (1) | 2.8186 (13) | 157 (1) |
| C5—H5···Cg1iii | 0.95 | 2.96 | 3.8219 (12) | 151 |
| C13—H13···Cg2iv | 0.95 | 2.97 | 3.4156 (14) | 110 |
| C20—H20···Cg3i | 0.95 | 2.90 | 3.5625 (16) | 128 |
| C21—H21···Cg4v | 0.95 | 2.75 | 3.2887 (15) | 116 |
| Symmetry codes: (i) −x+3/2, y+1/2, z; (iii) x+1/2, y, −z+3/2; (iv) −x+3/2, y−1/2, z; (v) x−1, y, z. |
Acknowledgements
The authors would like to thank D. B. Cordes for his fruitful discussion. TH is grateful to Hacettepe University Scientific Research Project Unit.
Funding information
Funding for this research was provided by: Hacettepe Üniversitesi (grant No. 013 D04 602 004).
References
Bansal, Y. & Silakari, O. (2012). Bioorg. Med. Chem. 20, 6208–6236. Web of Science CrossRef CAS PubMed Google Scholar
Barwiolek, M., Wojtczak, A., Kozakiewicz, A., Babinska, M., Tafelska-Kaczmarek, A., Larsen, E. & Szlyk, E. (2019). J. Lumin. 211, 88–95. CSD CrossRef Google Scholar
Chen, A. Y. & Liu, L. F. (1994). Annu. Rev. Pharmacol. Toxicol. 34, 191–218. CrossRef PubMed Google Scholar
Chen, J., Wang, Z., Li, C. M., Lu, Y. P., Vaddady, K., Meibohm, B., Dalton, J. T., Miller, D. D. & Li, W. (2010). J. Med. Chem. 53, 7414–7427. CrossRef PubMed Google Scholar
Dolomanov, O. V., Bourhis, L. J., Gildea, R. J., Howard, J. A. K. & Puschmann, H. (2009). J. Appl. Cryst. 42, 339–341. Web of Science CrossRef CAS IUCr Journals Google Scholar
Eltayeb, N. E., Hökelek, T. & Lasri, J. (2025). Acta Cryst. E81, 595–599. CSD CrossRef IUCr Journals Google Scholar
Eltayeb, N. E., Lasri, J., Soliman, S. M., Mavromatis, C., Hajjar, D., Elsilk, S. E., Babgi, B. A. & Hussien, M. A. (2020b). J. Mol. Struct. 1213, 128185. Web of Science CSD CrossRef Google Scholar
Eltayeb, N. E., Şen, F., Lasri, J., Hussien, M. A., Elsilk, S. E., Babgi, B. A., Gökçe, H. & Sert, Y. (2020a). J. Mol. Struct. 1202, 127315. Web of Science CSD CrossRef Google Scholar
Göker, H., Kuş, C., Boykin, D. W., Yildiz, S. & Altanlar, N. (2002). Bioorg. Med. Chem. 10, 2589–2596. Web of Science CrossRef PubMed CAS Google Scholar
Lasri, J., Aly, M. M., Eltayeb, N. E. & Babgi, B. A. (2018). J. Mol. Struct. 1164, 1–8. CSD CrossRef Google Scholar
Lasri, J., Eltayeb, N. E., Soliman, S. M., Ali, E. M. M., Adam, A. M., Roe, S. M., Akhdhar, A., Alzahrani, F. A., Alshhikh, N. E. & Babgi, B. A. (2025). ChemistrySelect 10, e01452. CrossRef Google Scholar
Lasri, J., Eltayeb, N. E., Soliman, S. M., Ali, E. M. M., Alhayyani, S. & Akhdhar, A. (2023a). Molecules 28, 4766. Web of Science CrossRef PubMed Google Scholar
Lasri, J., Eltayeb, N. E., Soliman, S. M., Ali, E. M. M., Alhayyani, S., Akhdhar, A. & Hussien, M. A. (2023b). J. Mol. Struct. 1287, 135673. Web of Science CSD CrossRef Google Scholar
Lasri, J., Eltayeb, N. E., Soliman, S. M., Ali, E. M. M., Rosli, M. M., Alzahrani, F. A., Eid, T. M., Alhayyani, S., Akhdhar, A., Dutta, A., Jaremko, M., Emwas, A. H. & Almaqwashi, A. A. (2024). ChemistrySelect 9, e202402236. Web of Science CSD CrossRef Google Scholar
Li, Y. F., Wang, G. F., He, P. L., Huang, W. G., Zhu, F. H., Gao, H. Y., Tang, W., Luo, Y., Feng, C. L., Shi, L. P., Ren, Y. D., Lu, W. & Zuo, J. P. (2006). J. Med. Chem. 49, 4790–4794. CrossRef PubMed Google Scholar
McKinnon, J. J., Jayatilaka, D. & Spackman, M. A. (2007). Chem. Commun. pp. 3814–3816. Web of Science CrossRef Google Scholar
Rigaku OD (2024). CrysAlis PRO. Rigaku Oxford Diffraction, Yarnton, England. Google Scholar
Sharma, D., Narasimhan, B., Kumar, P. & Jalbout, A. (2009). Eur. J. Med. Chem. 44, 1119–1127. CrossRef PubMed Google Scholar
Sheldrick, G. M. (2015a). Acta Cryst. A71, 3–8. Web of Science CrossRef IUCr Journals Google Scholar
Sheldrick, G. M. (2015b). Acta Cryst. C71, 3–8. Web of Science CrossRef IUCr Journals Google Scholar
Sontakke, V. A., Kate, A. N., Ghosh, S., More, P., Gonnade, R., Kumbhar, N. M., Kumbhar, A. A., Chopade, B. A. & Shinde, V. S. (2015). New J. Chem. 39, 4882–4890. CSD CrossRef Google Scholar
Spackman, M. A., McKinnon, J. J. & Jayatilaka, D. (2008). CrystEngComm 10, 377–388. CAS Google Scholar
Spackman, P. R., Turner, M. J., McKinnon, J. J., Wolff, S. K., Grimwood, D. J., Jayatilaka, D. & Spackman, M. A. (2021). J. Appl. Cryst. 54, 1006–1011. Web of Science CrossRef CAS IUCr Journals Google Scholar
Turner, M. J., Thomas, S. P., Shi, M. W., Jayatilaka, D. & Spackman, M. A. (2015). Chem. Commun. 51, 3735–3738. Web of Science CrossRef CAS Google Scholar
This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
access
journal menu



