research communications
accessCrystal structures of (S)-(−)-1-(4-chlorophenyl)-N-[(pyridin-2-yl)methylidene]ethan-1-amine and its cis-dichlorido{(S)-(−)-1-(4-chlorophenyl)-N-[(pyridin-2-yl)methylidene]ethan-1-amine}palladium(II) complex
aLab. Síntesis de Complejos, Fac. Cs. Quím. Benemérita Universidad, Autónoma de Puebla, Ciudad Universitaria, PO, Box, 72592 Puebla, Mexico, bLab. Síntesis de Complejos, Fac. Cs. Quím., Benemérita Universidad Autónoma de Puebla, Ciudad Universitaria, PO Box 72592, Puebla, Mexico, cInstituto de Química Universidad Autónoma de México UNAM, Circuito Exterior Cd. Universitaria, PO Box 04510, Ciudad de México, Mexico, and dCentro de Química, ICUAP, Benemérita Universidad Autónoma de Puebla, 72570 Puebla, Mexico
*Correspondence e-mail: [email protected]
One of the title compounds, the chiral Schiff base (S)-(−)-1-(4-chlorophenyl)-N-[(pyridin-2-yl)methylidene]ethan-1-amine (C14H13ClN2) crystallizes in the monoclinic Sohncke space group P21 with one molecule in the The ligand is obtained by condensation of (S)-(−)-1-(4-chlorophenyl)ethan-1-amine with 2-pyridinecarboxaldehyde. Its palladium(II) chloride complex, cis-dichlorido{(S)-(−)-1-(4-chlorophenyl)-N-[(pyridin-2-yl)methylidene]ethan-1-amine-κ2N,N′}palladium(II), [PdCl2(C14H13ClN2)], crystallizes in the orthorhombic Sohncke space group P212121, with one molecule in the asymmetric unit. The central PdII atom adopts a slightly distorted square-planar coordination environment, defined by two nitrogen donors (pyridyl-N and imine-N) and two chlorido ligands in a cis arrangement.
Keywords: crystal structure; Schiff base; palladium(II) complex.
1. Chemical context
Molecules containing imine or azomethine C=N groups are widespread in chemical and biological systems. formed readily by the condensation of or with primary are synthetically accessible and structurally versatile (Anzaldo Olivares et al., 2019
; Hernández Téllez et al., 2025
). These features make them particularly valuable in coordination chemistry, enabling the rational design of various metal complexes (Dalia et al., 2018
). In d-block chemistry, Schiff-base ligands can stabilize metals in multiple oxidation states, while systematic modifications of the imine framework allows fine-tuning of electronic and steric properties (Takeda et al., 2023
).
Chelation governs many processes in organometallic and bioinorganic chemistry: steric factors strongly influence coordination, geometry and reactivity (Mandal & Pratihar, 2023
; Fabbrizzi, 2020
). In particular, PdII complexes are central in catalytic reactions; their kinetic reactivity often exceeds that of PtII analogues by 4-5 orders of magnitude (Bugarčić et al., 2015
).
Herein we report the synthesis and crystal structures of a chiral Schiff base, C14H13ClN2, and its corresponding PdCl2 complex, [PdCl2(C14H13ClN2)].
2. Structural commentary
The molecular structure of the Schiff base ligand is shown in Fig. 1
. The crystal belongs to the monoclinic Sohncke space group P21 and the molecule displays the E configuration about the C=N double bond and the (S) configuration at the stereogenic center. The free ligand exhibits an imine C9=N1 bond length of 1.253 (4) Å, within the expected range for >C=N bonds, and a C7—N1—C9 bond angle of 117.4 (3)°, consistent with sp2 at C9 and N1. The ligand adopts a conformation governed by steric repulsion: the two aromatic rings are not coplanar, the angle between the plane defined by ring N2–C14–C13–C12–C11–C10 and the plane defined by ring C6–C1–C2–C3–C4–C5 is 32.08 (16)°.
| | Figure 1 Molecular structure of (S)-(−)-1-(4-chlorophenyl)-N-[(pyridin-2-yl)methylidene]ethan-1-amine. Displacement ellipsoids are drawn at the 30% probability level; H atoms are given as spheres of arbitrary radius. |
The corresponding PdCl2 complex crystallizes in the orthorhombic Sohncke P212121, with one molecule in the asymmetric unit. The imine ligand bonds to the PdII atom via two nitrogen donors (imine N1 and pyridyl N2) within an N^N five-membered chelate ring. Together with the two chlorido ligands, a distorted square-planar coordination is realized (Fig. 2
), with an N1—Pd—N2 bite angle of 80.8 (3)°. Observed bond lengths are Pd1—N1 = 2.045 (8) Å, Pd1—N2 = 2.036 (8) Å, Pd1—Cl1 = 2.291 (3) Å and Pd1—N2 = 2.282 (3) Å, values consistent with closely related Pd(II) complexes. The Cl1—Pd—Cl2 angle of 90.85 (9)° approximates the ideal 90° for ideal square-planar coordination. The imine bond in the complex, C9=N1 = 1.287 (10) Å, is slightly longer than in the free ligand and, together with a C7—N1—C9 angle of 122.0 (8)°, is consistent with sp2 The Pd(II) atom lies 0.012 Å out of the mean N2Cl2 coordination plane. Coordination to the metal increases steric effects in the ligand backbone, reflected by the change in torsion angle C1—C7—N1—C9 from −142.4 (3)° in the free ligand to 24.3 (12)° in the complex. Weak intramolecular C—H⋯Cl interactions stabilize the molecular conformation (Table 1
; entries 3–5)
|
| Figure 2 Molecular structure of the dichlorido{(S)-(−)-1-(4-chlorophenyl)-N-[(pyridin-2-yl)methylidene]ethan-1-amine}palladium(II) complex. Displacement ellipsoids are drawn at the 30% probability level; H atoms are given as spheres of arbitrary radius. |
3. Supramolecular features
Packing analysis of the imine ligand reveals no significant hydrogen-bonding interactions, and π–π stacking is negligible: centroid-to-centroid separations exceed 4.50 Å, larger than the typical range of 3.30–3.80 Å for these interactions (Fig. 3
).
| Figure 3 Crystal packing of the imine ligand. Displacement ellipsoids are as in Fig. 1 |
In the crystal of the palladium complex, some short intermolecular contacts organize the packing into extended motifs. Numerical data of intermolecular C—H⋯Cl interactions are listed in Table 1
(entries 1–2), and additional interactions are observed [Pd1⋯Cl2(x − , −y +
, −z + 1) = 3.798 (3) Å; Pd1⋯Cl3(−x + 2, y −
, −z +
) = 3.80 (1) Å]. Weak π–π stacking is present here with centroid-to-centroid separations falling within the typical range of 3.30–3.80 Å: the centroid of the C6–C1–C2–C3–C4–C5 ring is located 3.5915 (5) Å from the centroid of the N2–C14–C13–C12–C11–C10 ring with a slippage of 0.356 Å. A short intermolecular contact Pd1⋯H13 = 2.905 Å is also identified. All of these contacts contribute to the packing of the crystal (Fig. 4
). The shortest Pd⋯Pd separations exceed 6.00 Å, indicating the absence of significant metal–metal interactions.
| Figure 4 Crystal packing of the PdII complex; hydrogen bonds are shown as dashed lines. Displacement ellipsoids are drawn at the 30% probability level. All H atoms not involved in these interactions have been omitted for clarity |
4. Database survey
A search in the Cambridge Structural Database (CSD, Version 5.42, April 2025; Groom et al., 2016
) revealed numerous PdII complexes featuring N^N bidentate ligands with a square-planar coordination environment. Representative examples include GUTRAS, a palladium complex where the metal is coordinated by pyridine–oxazoline (Pyox) moieties bearing binaftyl and biaryl bridges (Guo et al., 2025
); AJADOH, containing sterically hindered Pyox ligands bound to PdCl2 in a cis configuration (Chen et al., 2019
); IBEKUY, which displays the typical square-planar environment expected for [PdIICl2L] complexes (Gutiérrez et al., 2015
). Complexes ITAJEV, ITAJIZ, and ITAJOF, derived from (imino)pyridine ligands, show an N^N bidentate coordination mode leading to slightly distorted square-planar environments (Ngcobo et al., 2021
). Similarly, IVIREM exhibits elongated Pd—N bond lengths attributed to steric and electron-donating effects (Tang et al., 2016
). KELRAV contains an R-configured Pyox ligand coordinating in a planar fashion (Dodd et al., 2006
). Other examples include MOBSED and MOBSUT, which incorporate hemilabile 2-(1H-imidazol-2-yl)pyridine and 2-(oxazol-2-yl)pyridine ligands forming five-membered chelate rings (Eseola et al., 2014
); ONACEO, ONACIS, and ONACOY, which feature moderately bulky Pyox ligands in a square-planar PdCl2 array (Tian et al., 2021
); PAGJAJ and PAGJEN show that Pd—N(pyridine) bonds are typically longer than Pd—N(imine) bonds due to the trans influence of coordinating substituents (Bastero et al., 2004
). PIKJEA presents a distorted four-coordinate environment involving two chlorido ligands and two nitrogen donors of an R-enantiomeric ligand (De Crisci et al., 2013
); QASXIR and QASXOX display cis and near-ideal square-planar geometry, with short Pd⋯Pd intermolecular contacts within the (Mishnev et al., 2000
); QEJSAZ, where C—H⋯Cl and C—H⋯O interactions consolidate the packing of the PdII complex (Svensson et al., 1999
), RILLUW, corresponding to a PdCl2 complex employed in a novel enantioselective Pd-catalyzed 6-endo aminoacetoxylation of unactivated (Qi et al., 2018
); RUCXOF01 and RUCXUL01, involve quinoline-oxazoline (Quox) ligands, which promote a cis square-planar coordination environment around PdII. This arrangement has been associated with enhanced enantioselective control in catalytic transformations; WUMLEV and WUMLIZ show a slightly tetrahedrally distorted square-planar environment, with donor atoms deviating from the coordination plane (Bastero et al., 2002
).
5. Synthesis and crystallization
Under solvent-free conditions, a 1:1 molar mixture of (S)-(−)-1-(4-chlorophenyl)ethan-1-amine (0.222 g, 1.42 mmol) and 2-pyridinecarboxaldehyde (0.152 g, 1.42 mmol) was stirred at room temperature, producing a white solid. The crude product was recrystallized twice from hexane/CH2Cl2 to give colorless crystals of the ligand.
For complex formation, a solution of bis(benzonitrile)palladium(II) chloride (0.100 g, 0.40 mmol) in CH2Cl2 (5 ml) was combined with a CH2Cl2 solution (10 ml) of (S)-(−)-N-[(2-pyridyl)methylidene]-1-(4-chlorophenyl)ethan-1-amine (0.157 g, 0.40 mmol). The mixture was stirred at room temperature for 24 h, during which a light-orange precipitate formed. The solid was collected by filtration and recrystallized from hexane/CH2Cl2 to afford light-orange crystals of the PdII complex.
6. Refinement
Crystal data, data collection and structure details are summarized in Table 2
. For H atoms, Uiso(H) was set to 1.2xUeq of the parent carbon for CH and aromatic/amide hydrogen atoms, and to 1.5xUeq for methyl (CH3) groups. Hydrogen atoms were placed in geometrically idealized positions and refined using a riding model: the tertiary CH attached to C7 (H7) was refined as a ternary CH in riding mode, and the aromatic/amide hydrogen atoms attached to C2, C3, C5, C6, C9, C11, C12, C13 and C14 were refined with riding coordinates. The methyl group at C8 (H8A, H8B, H8C) was treated as an idealized methyl and refined as a rotating group.
|
Supporting information
contains datablocks im-i-l_mo, imilpd_1_mo, New_Global_Publ_Block. DOI: https://doi.org/10.1107/S2056989025011430/wm5775sup1.cif
Structure factors: contains datablock im-i-l_mo. DOI: https://doi.org/10.1107/S2056989025011430/wm5775im-i-l_mosup3.hkl
Structure factors: contains datablock imilpd_1_mo. DOI: https://doi.org/10.1107/S2056989025011430/wm5775imilpd_1_mosup4.hkl
| C14H13ClN2 | F(000) = 256 |
| Mr = 244.71 | Dx = 1.222 Mg m−3 |
| Monoclinic, P21 | Mo Kα radiation, λ = 0.71073 Å |
| a = 5.6763 (2) Å | Cell parameters from 6050 reflections |
| b = 8.5159 (4) Å | θ = 3.6–21.3° |
| c = 13.7606 (6) Å | µ = 0.27 mm−1 |
| β = 89.226 (4)° | T = 293 K |
| V = 665.11 (5) Å3 | Block, colourless |
| Z = 2 | 0.7 × 0.59 × 0.08 mm |
| Xcalibur, Atlas, Gemini diffractometer | 2109 reflections with I > 2σ(I) |
| Detector resolution: 10.5564 pixels mm-1 | Rint = 0.050 |
| ω scans | θmax = 29.6°, θmin = 3.0° |
| Absorption correction: gaussian [CrysAlisPro (Rigaku OD, 2015) using a multifaceted crystal model based on expressions derived by Clark & Reid (1995)] | h = −7→7 |
| Tmin = 0.923, Tmax = 0.989 | k = −11→11 |
| 41587 measured reflections | l = −19→19 |
| 3728 independent reflections |
| Refinement on F2 | Hydrogen site location: inferred from neighbouring sites |
| Least-squares matrix: full | H-atom parameters constrained |
| R[F2 > 2σ(F2)] = 0.043 | w = 1/[σ2(Fo2) + (0.0513P)2 + 0.0411P] where P = (Fo2 + 2Fc2)/3 |
| wR(F2) = 0.123 | (Δ/σ)max < 0.001 |
| S = 1.01 | Δρmax = 0.15 e Å−3 |
| 3728 reflections | Δρmin = −0.19 e Å−3 |
| 155 parameters | Absolute structure: Flack x determined using 770 quotients [(I+)-(I-)]/[(I+)+(I-)] (Parsons et al., 2013) |
| 1 restraint | Absolute structure parameter: −0.03 (3) |
| Primary atom site location: structure-invariant direct methods |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| x | y | z | Uiso*/Ueq | ||
| C1 | 0.0976 (5) | 0.3440 (3) | 0.0974 (2) | 0.0655 (7) | |
| C2 | 0.0177 (6) | 0.4177 (4) | 0.0148 (3) | 0.0787 (9) | |
| H2 | −0.121009 | 0.475688 | 0.018249 | 0.094* | |
| C3 | 0.1379 (6) | 0.4075 (4) | −0.0723 (2) | 0.0817 (9) | |
| H3 | 0.081007 | 0.457479 | −0.127286 | 0.098* | |
| C4 | 0.3412 (5) | 0.3233 (4) | −0.0769 (2) | 0.0761 (8) | |
| C5 | 0.4257 (5) | 0.2472 (4) | 0.0028 (3) | 0.0803 (9) | |
| H5 | 0.564010 | 0.189009 | −0.001640 | 0.096* | |
| C6 | 0.3029 (5) | 0.2578 (4) | 0.0903 (2) | 0.0737 (8) | |
| H6 | 0.359586 | 0.206240 | 0.144757 | 0.088* | |
| C7 | −0.0352 (6) | 0.3630 (4) | 0.1930 (2) | 0.0787 (9) | |
| H7 | −0.202014 | 0.381664 | 0.179750 | 0.094* | |
| C8 | 0.0618 (11) | 0.5022 (5) | 0.2504 (3) | 0.1252 (17) | |
| H8A | 0.222867 | 0.482028 | 0.266844 | 0.188* | |
| H8B | −0.030054 | 0.516170 | 0.308868 | 0.188* | |
| H8C | 0.053493 | 0.595577 | 0.211571 | 0.188* | |
| C9 | −0.1914 (6) | 0.1824 (4) | 0.3011 (2) | 0.0663 (7) | |
| H9 | −0.329443 | 0.240387 | 0.295643 | 0.080* | |
| C10 | −0.1902 (5) | 0.0462 (3) | 0.36642 (19) | 0.0594 (6) | |
| C11 | −0.0015 (5) | −0.0557 (4) | 0.3716 (2) | 0.0669 (7) | |
| H11 | 0.132864 | −0.040192 | 0.333388 | 0.080* | |
| C12 | −0.0170 (6) | −0.1810 (4) | 0.4350 (2) | 0.0814 (9) | |
| H12 | 0.106259 | −0.252454 | 0.439271 | 0.098* | |
| C13 | −0.2142 (6) | −0.1989 (4) | 0.4910 (3) | 0.0869 (10) | |
| H13 | −0.227604 | −0.281927 | 0.534612 | 0.104* | |
| C14 | −0.3901 (6) | −0.0935 (5) | 0.4818 (3) | 0.0886 (11) | |
| H14 | −0.524419 | −0.107066 | 0.520363 | 0.106* | |
| Cl1 | 0.4936 (2) | 0.31179 (16) | −0.18694 (8) | 0.1191 (5) | |
| N1 | −0.0140 (5) | 0.2236 (3) | 0.25224 (19) | 0.0705 (7) | |
| N2 | −0.3844 (4) | 0.0290 (4) | 0.42131 (19) | 0.0780 (7) |
| U11 | U22 | U33 | U12 | U13 | U23 | |
| C1 | 0.0727 (17) | 0.0552 (16) | 0.0689 (16) | −0.0081 (14) | −0.0095 (13) | 0.0102 (13) |
| C2 | 0.0786 (19) | 0.0687 (19) | 0.089 (2) | 0.0115 (17) | −0.0045 (17) | 0.0194 (17) |
| C3 | 0.083 (2) | 0.084 (2) | 0.078 (2) | 0.0062 (18) | −0.0061 (16) | 0.0253 (18) |
| C4 | 0.0718 (19) | 0.079 (2) | 0.0778 (19) | −0.0078 (17) | 0.0008 (14) | 0.0155 (19) |
| C5 | 0.0637 (18) | 0.085 (2) | 0.092 (2) | 0.0029 (16) | −0.0035 (16) | 0.0198 (19) |
| C6 | 0.0710 (18) | 0.073 (2) | 0.077 (2) | −0.0041 (16) | −0.0151 (15) | 0.0194 (16) |
| C7 | 0.098 (2) | 0.0607 (19) | 0.078 (2) | 0.0026 (16) | −0.0048 (18) | 0.0099 (16) |
| C8 | 0.207 (5) | 0.075 (3) | 0.094 (3) | −0.023 (3) | 0.015 (3) | −0.006 (2) |
| C9 | 0.0741 (18) | 0.0676 (18) | 0.0571 (16) | 0.0094 (14) | −0.0010 (14) | −0.0044 (14) |
| C10 | 0.0662 (16) | 0.0598 (15) | 0.0521 (14) | −0.0023 (14) | −0.0023 (12) | −0.0068 (13) |
| C11 | 0.0653 (16) | 0.0674 (18) | 0.0679 (18) | 0.0005 (15) | 0.0007 (13) | −0.0045 (14) |
| C12 | 0.086 (2) | 0.0700 (19) | 0.088 (2) | 0.0046 (18) | −0.0147 (17) | 0.0074 (19) |
| C13 | 0.088 (2) | 0.083 (2) | 0.090 (2) | −0.013 (2) | −0.0135 (18) | 0.026 (2) |
| C14 | 0.077 (2) | 0.112 (3) | 0.077 (2) | −0.013 (2) | 0.0066 (16) | 0.025 (2) |
| Cl1 | 0.1121 (8) | 0.1502 (11) | 0.0944 (7) | 0.0124 (7) | 0.0247 (5) | 0.0234 (7) |
| N1 | 0.0841 (17) | 0.0614 (14) | 0.0660 (16) | −0.0001 (13) | −0.0015 (13) | 0.0072 (12) |
| N2 | 0.0670 (15) | 0.0952 (19) | 0.0717 (16) | 0.0036 (14) | 0.0064 (12) | 0.0052 (16) |
| C1—C2 | 1.380 (4) | C8—H8B | 0.9600 |
| C1—C6 | 1.380 (4) | C8—H8C | 0.9600 |
| C1—C7 | 1.516 (4) | C9—H9 | 0.9300 |
| C2—H2 | 0.9300 | C9—C10 | 1.467 (4) |
| C2—C3 | 1.374 (5) | C9—N1 | 1.253 (4) |
| C3—H3 | 0.9300 | C10—C11 | 1.381 (4) |
| C3—C4 | 1.359 (5) | C10—N2 | 1.336 (3) |
| C4—C5 | 1.366 (4) | C11—H11 | 0.9300 |
| C4—Cl1 | 1.737 (3) | C11—C12 | 1.380 (5) |
| C5—H5 | 0.9300 | C12—H12 | 0.9300 |
| C5—C6 | 1.386 (5) | C12—C13 | 1.359 (4) |
| C6—H6 | 0.9300 | C13—H13 | 0.9300 |
| C7—H7 | 0.9800 | C13—C14 | 1.350 (5) |
| C7—C8 | 1.531 (6) | C14—H14 | 0.9300 |
| C7—N1 | 1.446 (4) | C14—N2 | 1.334 (5) |
| C8—H8A | 0.9600 | ||
| C2—C1—C7 | 120.1 (3) | C7—C8—H8B | 109.5 |
| C6—C1—C2 | 118.0 (3) | C7—C8—H8C | 109.5 |
| C6—C1—C7 | 121.9 (3) | H8A—C8—H8B | 109.5 |
| C1—C2—H2 | 119.2 | H8A—C8—H8C | 109.5 |
| C3—C2—C1 | 121.7 (3) | H8B—C8—H8C | 109.5 |
| C3—C2—H2 | 119.2 | C10—C9—H9 | 118.7 |
| C2—C3—H3 | 120.5 | N1—C9—H9 | 118.7 |
| C4—C3—C2 | 119.0 (3) | N1—C9—C10 | 122.7 (3) |
| C4—C3—H3 | 120.5 | C11—C10—C9 | 122.6 (3) |
| C3—C4—C5 | 121.3 (3) | N2—C10—C9 | 115.0 (3) |
| C3—C4—Cl1 | 118.9 (3) | N2—C10—C11 | 122.4 (3) |
| C5—C4—Cl1 | 119.8 (3) | C10—C11—H11 | 120.8 |
| C4—C5—H5 | 120.4 | C12—C11—C10 | 118.4 (3) |
| C4—C5—C6 | 119.3 (3) | C12—C11—H11 | 120.8 |
| C6—C5—H5 | 120.4 | C11—C12—H12 | 120.3 |
| C1—C6—C5 | 120.7 (3) | C13—C12—C11 | 119.4 (3) |
| C1—C6—H6 | 119.6 | C13—C12—H12 | 120.3 |
| C5—C6—H6 | 119.6 | C12—C13—H13 | 120.8 |
| C1—C7—H7 | 109.0 | C14—C13—C12 | 118.5 (3) |
| C1—C7—C8 | 110.6 (3) | C14—C13—H13 | 120.8 |
| C8—C7—H7 | 109.0 | C13—C14—H14 | 117.8 |
| N1—C7—C1 | 110.9 (3) | N2—C14—C13 | 124.5 (3) |
| N1—C7—H7 | 109.0 | N2—C14—H14 | 117.8 |
| N1—C7—C8 | 108.2 (3) | C9—N1—C7 | 117.4 (3) |
| C7—C8—H8A | 109.5 | C14—N2—C10 | 116.9 (3) |
| C1—C2—C3—C4 | −0.3 (5) | C8—C7—N1—C9 | 96.1 (4) |
| C1—C7—N1—C9 | −142.4 (3) | C9—C10—C11—C12 | −179.7 (3) |
| C2—C1—C6—C5 | 0.6 (5) | C9—C10—N2—C14 | −179.9 (3) |
| C2—C1—C7—C8 | −91.5 (4) | C10—C9—N1—C7 | −177.9 (3) |
| C2—C1—C7—N1 | 148.5 (3) | C10—C11—C12—C13 | −1.0 (5) |
| C2—C3—C4—C5 | 0.9 (5) | C11—C10—N2—C14 | −0.6 (5) |
| C2—C3—C4—Cl1 | −179.6 (3) | C11—C12—C13—C14 | 0.7 (5) |
| C3—C4—C5—C6 | −0.8 (5) | C12—C13—C14—N2 | −0.2 (6) |
| C4—C5—C6—C1 | 0.0 (5) | C13—C14—N2—C10 | 0.2 (5) |
| C6—C1—C2—C3 | −0.4 (5) | Cl1—C4—C5—C6 | 179.7 (3) |
| C6—C1—C7—C8 | 86.6 (4) | N1—C9—C10—C11 | −6.7 (4) |
| C6—C1—C7—N1 | −33.4 (4) | N1—C9—C10—N2 | 172.7 (3) |
| C7—C1—C2—C3 | 177.7 (3) | N2—C10—C11—C12 | 1.0 (4) |
| C7—C1—C6—C5 | −177.5 (3) |
| [PdCl2(C14H13ClN2)] | Dx = 1.851 Mg m−3 |
| Mr = 422.01 | Mo Kα radiation, λ = 0.71073 Å |
| Orthorhombic, P212121 | Cell parameters from 3623 reflections |
| a = 10.2429 (9) Å | θ = 3.6–26.7° |
| b = 11.4188 (14) Å | µ = 1.74 mm−1 |
| c = 12.9466 (17) Å | T = 150 K |
| V = 1514.3 (3) Å3 | Plate, translucent orange |
| Z = 4 | 0.62 × 0.24 × 0.12 mm |
| F(000) = 832 |
| Xcalibur, Atlas, Gemini diffractometer | 2665 reflections with I > 2σ(I) |
| Detector resolution: 10.5564 pixels mm-1 | Rint = 0.064 |
| ω scans | θmax = 27.1°, θmin = 3.1° |
| Absorption correction: analytical [CrysAlisPro (Rigaku OD, 2015) using a multifaceted crystal model based on expressions derived by Clark & Reid (1995)] | h = −13→13 |
| Tmin = 0.870, Tmax = 0.966 | k = −14→14 |
| 16724 measured reflections | l = −16→16 |
| 3328 independent reflections |
| Refinement on F2 | Hydrogen site location: inferred from neighbouring sites |
| Least-squares matrix: full | H-atom parameters constrained |
| R[F2 > 2σ(F2)] = 0.046 | w = 1/[σ2(Fo2) + 8.4403P] where P = (Fo2 + 2Fc2)/3 |
| wR(F2) = 0.092 | (Δ/σ)max = 0.001 |
| S = 1.07 | Δρmax = 1.38 e Å−3 |
| 3328 reflections | Δρmin = −0.67 e Å−3 |
| 182 parameters | Absolute structure: Flack x determined using 1011 quotients [(I+)-(I-)]/[(I+)+(I-)] (Parsons et al., 2013) |
| 0 restraints | Absolute structure parameter: −0.06 (3) |
| Primary atom site location: iterative |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| x | y | z | Uiso*/Ueq | ||
| C1 | 0.4453 (10) | 0.5307 (9) | 0.7078 (7) | 0.033 (2) | |
| C2 | 0.4209 (10) | 0.4661 (9) | 0.7983 (7) | 0.033 (2) | |
| H2 | 0.483692 | 0.410719 | 0.821343 | 0.040* | |
| C3 | 0.3073 (10) | 0.4815 (9) | 0.8542 (7) | 0.033 (2) | |
| H3 | 0.291881 | 0.437210 | 0.915123 | 0.039* | |
| C4 | 0.2163 (9) | 0.5625 (9) | 0.8203 (8) | 0.032 (2) | |
| C5 | 0.2377 (9) | 0.6267 (9) | 0.7300 (8) | 0.038 (3) | |
| H5 | 0.174424 | 0.681322 | 0.706440 | 0.046* | |
| C6 | 0.3530 (10) | 0.6095 (9) | 0.6748 (8) | 0.037 (3) | |
| H6 | 0.367948 | 0.653067 | 0.613396 | 0.044* | |
| C7 | 0.5713 (10) | 0.5176 (8) | 0.6472 (8) | 0.031 (2) | |
| H7 | 0.549819 | 0.533739 | 0.573198 | 0.038* | |
| C8 | 0.6299 (10) | 0.3943 (9) | 0.6513 (9) | 0.039 (3) | |
| H8A | 0.706730 | 0.390586 | 0.606362 | 0.059* | |
| H8B | 0.564812 | 0.337268 | 0.627834 | 0.059* | |
| H8C | 0.655573 | 0.376058 | 0.722453 | 0.059* | |
| C9 | 0.6734 (9) | 0.6515 (8) | 0.7680 (6) | 0.0279 (17) | |
| H9 | 0.605894 | 0.634992 | 0.816155 | 0.033* | |
| C10 | 0.7778 (9) | 0.7307 (9) | 0.7950 (8) | 0.031 (2) | |
| C11 | 0.7857 (10) | 0.7891 (9) | 0.8896 (8) | 0.040 (3) | |
| H11 | 0.722366 | 0.775686 | 0.941951 | 0.049* | |
| C12 | 0.8873 (9) | 0.8666 (9) | 0.9058 (10) | 0.044 (3) | |
| H12 | 0.895917 | 0.906679 | 0.969730 | 0.053* | |
| C13 | 0.9756 (11) | 0.8846 (9) | 0.8274 (9) | 0.042 (3) | |
| H13 | 1.044741 | 0.939019 | 0.836551 | 0.050* | |
| C14 | 0.9644 (9) | 0.8235 (8) | 0.7345 (8) | 0.034 (2) | |
| H14 | 1.027010 | 0.836022 | 0.681529 | 0.041* | |
| Cl1 | 0.7729 (3) | 0.5439 (3) | 0.4479 (2) | 0.0410 (6) | |
| Cl2 | 1.0184 (2) | 0.7101 (2) | 0.51194 (19) | 0.0354 (6) | |
| Cl3 | 0.0736 (2) | 0.5835 (2) | 0.8907 (2) | 0.0430 (7) | |
| N1 | 0.6727 (8) | 0.6036 (6) | 0.6781 (5) | 0.0281 (16) | |
| N2 | 0.8678 (7) | 0.7481 (6) | 0.7191 (6) | 0.0265 (17) | |
| Pd1 | 0.82980 (7) | 0.65153 (6) | 0.59030 (5) | 0.02722 (17) |
| U11 | U22 | U33 | U12 | U13 | U23 | |
| C1 | 0.034 (6) | 0.038 (6) | 0.028 (5) | −0.004 (4) | −0.008 (4) | −0.004 (4) |
| C2 | 0.027 (5) | 0.044 (6) | 0.028 (5) | −0.002 (5) | −0.003 (4) | −0.003 (5) |
| C3 | 0.030 (6) | 0.045 (6) | 0.023 (5) | −0.010 (5) | 0.002 (4) | 0.002 (4) |
| C4 | 0.024 (5) | 0.039 (6) | 0.033 (5) | −0.004 (4) | 0.003 (4) | −0.001 (5) |
| C5 | 0.028 (5) | 0.046 (7) | 0.042 (6) | 0.000 (4) | −0.004 (4) | 0.016 (5) |
| C6 | 0.034 (6) | 0.040 (6) | 0.036 (5) | −0.005 (5) | −0.003 (5) | 0.007 (4) |
| C7 | 0.031 (5) | 0.032 (6) | 0.031 (5) | −0.005 (4) | −0.003 (4) | 0.000 (4) |
| C8 | 0.035 (6) | 0.035 (6) | 0.048 (7) | −0.003 (5) | 0.006 (5) | 0.003 (5) |
| C9 | 0.021 (4) | 0.035 (5) | 0.027 (4) | 0.008 (5) | 0.000 (4) | 0.002 (4) |
| C10 | 0.025 (5) | 0.034 (6) | 0.036 (6) | 0.007 (4) | 0.000 (4) | −0.002 (5) |
| C11 | 0.037 (6) | 0.043 (6) | 0.042 (7) | 0.002 (5) | 0.006 (5) | −0.009 (5) |
| C12 | 0.044 (6) | 0.044 (6) | 0.043 (6) | 0.006 (5) | 0.003 (6) | −0.013 (7) |
| C13 | 0.033 (6) | 0.035 (6) | 0.058 (7) | −0.003 (5) | −0.009 (5) | −0.003 (5) |
| C14 | 0.026 (5) | 0.029 (6) | 0.047 (6) | 0.008 (4) | 0.005 (4) | 0.006 (5) |
| Cl1 | 0.0353 (13) | 0.0519 (17) | 0.0358 (13) | −0.0044 (12) | 0.0051 (11) | −0.0131 (12) |
| Cl2 | 0.0282 (13) | 0.0432 (15) | 0.0350 (13) | −0.0025 (11) | 0.0019 (10) | 0.0007 (11) |
| Cl3 | 0.0304 (13) | 0.0540 (17) | 0.0447 (17) | 0.0026 (12) | 0.0069 (12) | 0.0025 (13) |
| N1 | 0.027 (4) | 0.032 (4) | 0.025 (4) | 0.009 (4) | 0.006 (4) | 0.002 (3) |
| N2 | 0.028 (4) | 0.021 (4) | 0.031 (4) | 0.007 (3) | 0.000 (3) | −0.001 (3) |
| Pd1 | 0.0225 (3) | 0.0317 (3) | 0.0274 (3) | 0.0018 (3) | 0.0002 (3) | −0.0006 (3) |
| C1—C2 | 1.407 (14) | C9—H9 | 0.9500 |
| C1—C6 | 1.374 (14) | C9—C10 | 1.443 (13) |
| C1—C7 | 1.518 (14) | C9—N1 | 1.287 (10) |
| C2—H2 | 0.9500 | C10—C11 | 1.397 (13) |
| C2—C3 | 1.382 (13) | C10—N2 | 1.362 (12) |
| C3—H3 | 0.9500 | C11—H11 | 0.9500 |
| C3—C4 | 1.385 (13) | C11—C12 | 1.382 (14) |
| C4—C5 | 1.398 (13) | C12—H12 | 0.9500 |
| C4—Cl3 | 1.739 (10) | C12—C13 | 1.375 (15) |
| C5—H5 | 0.9500 | C13—H13 | 0.9500 |
| C5—C6 | 1.394 (14) | C13—C14 | 1.395 (14) |
| C6—H6 | 0.9500 | C14—H14 | 0.9500 |
| C7—H7 | 1.0000 | C14—N2 | 1.327 (12) |
| C7—C8 | 1.531 (13) | Cl1—Pd1 | 2.291 (3) |
| C7—N1 | 1.484 (12) | Cl2—Pd1 | 2.282 (3) |
| C8—H8A | 0.9800 | N1—Pd1 | 2.045 (8) |
| C8—H8B | 0.9800 | N2—Pd1 | 2.036 (8) |
| C8—H8C | 0.9800 | ||
| C2—C1—C7 | 122.0 (9) | C10—C9—H9 | 120.3 |
| C6—C1—C2 | 118.7 (10) | N1—C9—H9 | 120.3 |
| C6—C1—C7 | 119.3 (9) | N1—C9—C10 | 119.3 (9) |
| C1—C2—H2 | 119.4 | C11—C10—C9 | 123.6 (9) |
| C3—C2—C1 | 121.3 (10) | N2—C10—C9 | 114.7 (8) |
| C3—C2—H2 | 119.4 | N2—C10—C11 | 121.6 (9) |
| C2—C3—H3 | 120.5 | C10—C11—H11 | 120.6 |
| C2—C3—C4 | 119.1 (9) | C12—C11—C10 | 118.8 (10) |
| C4—C3—H3 | 120.5 | C12—C11—H11 | 120.6 |
| C3—C4—C5 | 120.6 (9) | C11—C12—H12 | 120.7 |
| C3—C4—Cl3 | 119.5 (8) | C13—C12—C11 | 118.6 (11) |
| C5—C4—Cl3 | 119.9 (8) | C13—C12—H12 | 120.7 |
| C4—C5—H5 | 120.4 | C12—C13—H13 | 119.7 |
| C6—C5—C4 | 119.2 (9) | C12—C13—C14 | 120.5 (10) |
| C6—C5—H5 | 120.4 | C14—C13—H13 | 119.7 |
| C1—C6—C5 | 121.1 (9) | C13—C14—H14 | 119.5 |
| C1—C6—H6 | 119.5 | N2—C14—C13 | 121.0 (9) |
| C5—C6—H6 | 119.5 | N2—C14—H14 | 119.5 |
| C1—C7—H7 | 106.8 | C7—N1—Pd1 | 125.3 (6) |
| C1—C7—C8 | 114.0 (8) | C9—N1—C7 | 122.0 (8) |
| C8—C7—H7 | 106.8 | C9—N1—Pd1 | 112.6 (7) |
| N1—C7—C1 | 112.9 (8) | C10—N2—Pd1 | 112.5 (6) |
| N1—C7—H7 | 106.8 | C14—N2—C10 | 119.4 (8) |
| N1—C7—C8 | 109.0 (8) | C14—N2—Pd1 | 128.1 (7) |
| C7—C8—H8A | 109.5 | Cl2—Pd1—Cl1 | 90.85 (9) |
| C7—C8—H8B | 109.5 | N1—Pd1—Cl1 | 95.9 (2) |
| C7—C8—H8C | 109.5 | N1—Pd1—Cl2 | 172.6 (2) |
| H8A—C8—H8B | 109.5 | N2—Pd1—Cl1 | 176.3 (2) |
| H8A—C8—H8C | 109.5 | N2—Pd1—Cl2 | 92.5 (2) |
| H8B—C8—H8C | 109.5 | N2—Pd1—N1 | 80.8 (3) |
| C1—C2—C3—C4 | −0.1 (15) | C9—C10—C11—C12 | −177.5 (9) |
| C1—C7—N1—C9 | 24.3 (12) | C9—C10—N2—C14 | 177.0 (8) |
| C1—C7—N1—Pd1 | −159.7 (6) | C9—C10—N2—Pd1 | −1.8 (10) |
| C2—C1—C6—C5 | 0.7 (15) | C10—C9—N1—C7 | 177.4 (8) |
| C2—C1—C7—C8 | 32.0 (13) | C10—C9—N1—Pd1 | 0.9 (10) |
| C2—C1—C7—N1 | −93.0 (11) | C10—C11—C12—C13 | 0.9 (15) |
| C2—C3—C4—C5 | 0.9 (15) | C11—C10—N2—C14 | −1.0 (13) |
| C2—C3—C4—Cl3 | −179.5 (7) | C11—C10—N2—Pd1 | −179.8 (7) |
| C3—C4—C5—C6 | −0.9 (15) | C11—C12—C13—C14 | −1.6 (16) |
| C4—C5—C6—C1 | 0.1 (16) | C12—C13—C14—N2 | 0.9 (15) |
| C6—C1—C2—C3 | −0.7 (15) | C13—C14—N2—C10 | 0.4 (13) |
| C6—C1—C7—C8 | −149.2 (10) | C13—C14—N2—Pd1 | 178.9 (7) |
| C6—C1—C7—N1 | 85.8 (11) | Cl3—C4—C5—C6 | 179.5 (8) |
| C7—C1—C2—C3 | 178.1 (9) | N1—C9—C10—C11 | 178.5 (9) |
| C7—C1—C6—C5 | −178.1 (9) | N1—C9—C10—N2 | 0.6 (13) |
| C8—C7—N1—C9 | −103.4 (10) | N2—C10—C11—C12 | 0.3 (15) |
| C8—C7—N1—Pd1 | 72.6 (9) |
| D—H···A | D—H | H···A | D···A | D—H···A |
| C2—H2···Cl2i | 0.95 | 2.83 | 3.4765 (5) | 126 |
| C6—H6···Cl2ii | 0.95 | 2.73 | 3.5996 (5) | 153 |
| C7—H7···Cl1 | 1.00 | 2.80 | 3.318 (10) | 113 |
| C8—H8A···Cl1 | 0.98 | 2.78 | 3.464 (11) | 127 |
| C14—H14···Cl2 | 0.95 | 2.63 | 3.207 (11) | 120 |
| Symmetry codes: (i) −x+3/2, −y+1, z+1/2; (ii) x−1/2, −y+3/2, −z+1. |
Acknowledgements
We thank the Consejo Nacional de Humanidades, Ciencias y Tecnologías (Conahcyt) and the Vicerrectoría de Investigación y Estudios de Posgrado (VIEP-BUAP) for financial support.
Funding information
Funding for this research was provided by: Consejo Nacional de Ciencia y Tecnologa; Vicerrectora de Investigacin y Estudios de Posgrado, Benemrita Universidad Autnoma de Puebla.
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