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Crystal structure, Hirshfeld surface and crystal void analysis of (1Z)-1-[(E)-2-(2H-1,3-benzodioxol-5-yl­methyl­­idene)hydrazin-1-yl­­idene]-1,2-di­hydro­phthalazine

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aDepartment of Chemistry, Annamalai University, Annamalainagar, Chidambaram 608 002, India, and bPG & Research Department of Physics, Government Arts College, Melur 625 106, India
*Correspondence e-mail: [email protected], [email protected]

Edited by M. Weil, Vienna University of Technology, Austria (Received 19 December 2025; accepted 20 January 2026; online 23 January 2026)

The title com­pound, C16H12N4O2, crystallizes in the tetra­gonal space group I41/a with one mol­ecule in the asymmetric unit. The 2H-1,3-benzodioxole ring is almost planar [maximum deviation of −0.039 (3) Å] and makes a dihedral angle of 11.25 (5)° with the 1,2-di­hydro­phthalazine moiety. An intra­molecular N—H⋯N hy­dro­gen bond stabilizes the mol­ecular conformation. Inter­molecular N—H⋯N hy­dro­gen bonds, as well as C—H⋯N hy­dro­gen bonds, lead to the formation of supra­molecular chains extending parallel to [001]. The inter­molecular inter­actions were qu­anti­fied and analysed using Hirshfeld surface analysis, revealing that H⋯H inter­actions contribute most to the crystal packing (37.4%). The volume of the crystal voids and the percentage of free space were calculated to be 614.55 Å3 and 11.5%, respectively.

1. Chemical context

Hydrazone derivatives have remained important mol­ecules in medicinal and organic chemistry for decades, largely because they are easy to synthesize, adaptable in structure and capable of exhibiting a wide range of biological activities. Within this class, hydrazones linked to heterocyclic systems have received particular attention. The presence of fused aromatic rings often strengthens pharmacological effects, and many such derivatives have been reported to show anti­diabetic, anti­cancer, anti­microbial, anti­oxidant and anti-inflammatory properties. The hydrazone unit (–C=N—NH–; Punitha et al., 2020View full citation; Senthilkumar et al., 2021View full citation) provides a conjugated path­way that allows for efficient electron delocalization and sup­ports inter­molecular hy­dro­gen bonding, both of which can improve inter­actions with biological receptors. The 1,2-di­hy­dro­iso­quinoline core is a widely recognized pharmacophore and often contributes to mol­ecular rigidity, planarity and the possibility of ππ stacking, characteristics associated with notable anti­cancer and neuroactive potential. The benzo[d][1,3]dioxole ring is a structural motif commonly encountered in naturally occurring bioactive com­pounds, such as safrole derivatives and piperine analogues. Its electron-rich O atoms, com­pact ring system and moderate lipophilicity help to enhance membrane permeability and to enable additional hy­dro­gen-bonding or π-based inter­actions. The combined influence of the electron-donating dioxole group and the electron-withdrawing hydrazone segment generates an inter­nal charge-transfer environment, a feature often linked with stronger biological responses, improved anti­oxidant behaviour and distinctive electronic transitions. Overall, the thoughtful assembly of these functional groups results in a mol­ecular scaf­fold with promising physicochemical and biological attributes (Maheswari et al., 2025View full citation; Senthilkumar et al., 2020View full citation).

[Scheme 1]

In the present work, we report on the crystal structure, Hirshfeld surface analysis and crystal void studies of (1Z)-1-[(E)-2-(2H-1,3-benzodioxol-5-yl­methyl­idene)hydrazin-1-yl­idene]-1,2-di­hydro­phthalazine, (I)[link], which brings together several structural features discussed above.

2. Structural commentary

The mol­ecular structure of (I)[link] is displayed in Fig. 1[link]. The C8—N1 [1.282 (2) Å], C9—N2 [1.308 (2) Å] and C10—N4 [1.289 (3) Å] bond lengths confirm their double-bond character. The 2H-1,3-benzodioxole ring (C1–C3/O1/C4/O2/C5–C7) is essentialy planar, with a maximum deviation of −0.039 (3) Å for atom C4. The planes of the fused five- and six-membered rings of this moiety make a dihedral angle of 0.41 (1)°. The 1,2-di­hydro­phthalazine moiety (C9/N3/N4/C10–C16) is also planar, exhibiting a maximum devation of 0.006 (2) Å for atom C15. The planes of the two fused six-membered rings of this moiety make a dihedral angle of 0.31 (1)°. The benzodioxole and di­hydro­phthalazine moieties are oriented with respect to each other at a dihedral angle of 11.25 (5)°. An intra­molecular N3—H3⋯N1 hy­dro­gen bond contributes to the stabilization of the mol­ecular conformation (Table 1[link]) and generates an S(5) ring motif (Bernstein et al., 1995View full citation), as shown in Fig. 1[link].

Table 1
Hydrogen-bond geometry (Å, °)

D—H⋯A D—H H⋯A DA D—H⋯A
N3—H3⋯N1 0.86 2.24 2.596 (2) 105
N3—H3⋯N2i 0.86 2.28 3.013 (2) 143
C8—H8⋯N1ii 0.93 2.62 3.517 (2) 162
Symmetry codes: (i) Mathematical equation; (ii) Mathematical equation.
[Figure 1]
Figure 1
The mol­ecular structure of com­pound (I)[link], showing the atom labelling. Displacement ellipsoids are drawn at the 50% probability level. The intra­molecular hy­dro­gen bond is shown as a dashed line.

3. Supra­molecular features

In the crystal structure of (I)[link], the mol­ecules are inter­con­nected through N3—H3⋯N2i hy­dro­gen bonds, generating a C(4) chain motif that propagates parallel to [001] (Table 1[link] and Fig. 2[link]). In addition, non-classical C8—H8⋯N1ii hy­dro­gen bonds link adjacent mol­ecules to form C(3) chain motifs that extend in a helical fashion parallel to [001]. Together with the intra­molecular N3—H3⋯N2 hy­dro­gen bond, these inter­actions combine into an S(7) ring motif, which further reinforces the overall crystal packing, as illustrated in Fig. 2[link].

[Figure 2]
Figure 2
The crystal packing of (I)[link], with N—H⋯N and C—H⋯N inter­molecular inter­actions shown as dashed lines. For clarity, H atoms not involved in these inter­actions have been omitted.

4. Hirshfeld surface and void analysis

In order to characterize and qu­antify the inter­molecular in­ter­actions of (I)[link], a Hirshfeld surface (HS) analysis (Spackman & Jayatilaka, 2009View full citation) was carried out using CrystalExplorer (Spackman et al., 2021View full citation). The HS mapped over dnorm is illustrated in Fig. 3[link], where deep-red spots indicative of strong inter­actions occur at N1, N2, H3 and H8, and these atoms are responsible for the intra- and inter­molecular hy­dro­gen bonds discussed above. The associated two-dimensional fingerprint plots (McKinnon et al., 2007View full citation) provide qu­anti­tative information about the non-covalent inter­actions in the crystal packing in terms of the percentage contribution of the inter­atomic contacts (Spackman & McKinnon, 2002View full citation). As shown in Fig. 4[link], the overall two-dimensional fingerprint plot for com­pound (I)[link] is delineated into H⋯H, H⋯C/C⋯H, H⋯N/N⋯H, H⋯O/O⋯H, C⋯C, N⋯C/C⋯N and C⋯O/O⋯C contacts, re­vealing that H⋯H and H⋯C/C⋯H inter­actions are the main contributors to the crystal packing.

[Figure 3]
Figure 3
A view of the Hirshfeld surface mapped over dnorm for com­pound (I)[link].
[Figure 4]
Figure 4
Two-dimensional fingerprint plots for com­pound (I)[link], showing (a) all inter­actions, and delineated into (b) H⋯H, (c) H⋯C/C⋯H, (d) H⋯N/N⋯H, (e) H⋯O/O⋯H, (f) C⋯C, (g) N⋯C/C⋯N and (h) C⋯O/O⋯C inter­actions. The di and de values are the closest inter­nal and external distances (in Å) from given points on the Hirshfeld surface.

A void analysis was performed by adding up the electron densities of the spherically symmetric atoms contained in the asymmetric unit (Turner et al., 2011View full citation). The void surface is defined as an isosurface of the procrystal electron density and is calculated for the whole unit cell where the void surface meets the boundary of the unit cell and capping faces are generated to create an enclosed volume. The volumes of the crystal voids (Fig. 5[link]) and the percentages of free space in the unit cells were calculated to be 614.55 Å3 and 11.15%, respectively.

[Figure 5]
Figure 5
Graphical views of voids in the crystal packing of com­pound view down the (a) a axis and (b) b axis.

5. Synthesis and crystallization

Compound (I)[link] was prepared by condensation of hydralazine hydro­chloride (0.98 g, 0.005 mol) with piperonal (0.75 g, 0.005 mol) in methanol (30 ml). Sodium acetate (0.41 g, 0.005 mol) was added to neutralize the hydralazine hydro­chloride in situ, generating free hydralazine; the resulting acetic acid acted as a mild catalyst to promote the reaction. The reaction progress was monitored by thin-layer chromatography (TLC) with ethyl acetate–hexane (5 ml; 1:4 v/v), con­firming the disappearance of the starting materials. On cooling to room tem­per­a­ture, the crystallized product was collected by vacuum filtration and washed with cold methanol to remove inorganic salts. Single crystals suitable for X-ray diffraction were obtained by recrystallization from di­chloro­methane–methanol (1:1 v/v) by slow evaporation at room tem­per­a­ture.

6. Refinement

Crystal data, data collection and structure refinement details are summarized in Table 2[link]. All H atoms were placed in idealized positions and allowed to ride on their parent atoms, with N—H = 0.86 Å and C—H = 0.93–0.97 Å, and with Uiso(H) = 1.5Ueq(C) for methyl H atoms and Uiso(H) = 1.2Ueq(C,N) for all other H atoms.

Table 2
Experimental details

Crystal data
Chemical formula C16H12N4O2
Mr 292.30
Crystal system, space group Tetragonal, I41/a
Temperature (K) 300
a, c (Å) 20.721 (5), 12.835 (3)
V3) 5511 (3)
Z 16
Radiation type Mo Kα
μ (mm−1) 0.10
Crystal size (mm) 0.33 × 0.13 × 0.12
 
Data collection
Diffractometer Bruker APEXII CCD
Absorption correction Multi-scan (SADABS; Krause et al., 2015View full citation)
Tmin, Tmax 0.968, 0.988
No. of measured, independent and observed [I > 2σ(I)] reflections 40086, 3416, 2231
Rint 0.044
(sin θ/λ)max−1) 0.666
 
Refinement
R[F2 > 2σ(F2)], wR(F2), S 0.048, 0.166, 1.17
No. of reflections 3416
No. of parameters 200
H-atom treatment H-atom parameters constrained
Δρmax, Δρmin (e Å−3) 0.18, −0.19
Computer programs: APEX3 (Bruker, 2017View full citation), SAINT (Bruker, 2017View full citation), SHELXT (Sheldrick, 2015aView full citation), ORTEP-3 for Windows (Farrugia, 2012View full citation), SHELXL (Sheldrick, 2015bView full citation) and PLATON (Spek, 2020View full citation).

Supporting information


Computing details top

(1Z)-1-[(E)-2-(2H-1,3-Benzodioxol-5-ylmethylidene)hydrazin-1-ylidene]-1,2-dihydrophthalazine top
Crystal data top
C16H12N4O2Dx = 1.409 Mg m3
Mr = 292.30Mo Kα radiation, λ = 0.71073 Å
Tetragonal, I41/aCell parameters from 9881 reflections
a = 20.721 (5) Åθ = 2.7–24.9°
c = 12.835 (3) ŵ = 0.10 mm1
V = 5511 (3) Å3T = 300 K
Z = 16Block, yellow
F(000) = 24320.33 × 0.13 × 0.12 mm
Data collection top
Bruker APEXII CCD
diffractometer
2231 reflections with I > 2σ(I)
Radiation source: i-mu-s microfocus sourceRint = 0.044
φ and ω scansθmax = 28.3°, θmin = 1.9°
Absorption correction: multi-scan
(SADABS; Krause et al., 2015)
h = 2725
Tmin = 0.968, Tmax = 0.988k = 2526
40086 measured reflectionsl = 1717
3416 independent reflections
Refinement top
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH-atom parameters constrained
R[F2 > 2σ(F2)] = 0.048 w = 1/[σ2(Fo2) + (0.0632P)2 + 3.5875P]
where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.166(Δ/σ)max < 0.001
S = 1.17Δρmax = 0.18 e Å3
3416 reflectionsΔρmin = 0.19 e Å3
200 parametersExtinction correction: SHELXL (Sheldrick, 2015b), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
0 restraintsExtinction coefficient: 0.00061 (18)
Special details top

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
O10.39195 (9)0.77008 (9)0.29979 (16)0.0864 (6)
O20.35150 (8)0.76292 (8)0.13220 (14)0.0724 (5)
N10.18949 (7)0.56513 (7)0.13410 (12)0.0454 (4)
N20.14478 (7)0.51426 (7)0.13390 (12)0.0450 (4)
N30.14684 (8)0.53064 (8)0.04779 (12)0.0490 (4)
H30.1764820.5591690.0389980.059*
N40.12757 (9)0.51996 (9)0.14794 (13)0.0566 (5)
C10.28885 (10)0.62896 (10)0.34250 (15)0.0522 (5)
H10.2763230.5991180.3927050.063*
C20.33250 (11)0.67694 (11)0.36977 (17)0.0609 (6)
H20.3491170.6801150.4368850.073*
C30.34972 (10)0.71904 (10)0.29344 (17)0.0556 (5)
C40.39145 (13)0.79955 (12)0.2006 (2)0.0777 (7)
H4A0.4350180.8015400.1731260.093*
H4B0.3750450.8432540.2062060.093*
C50.32496 (9)0.71475 (9)0.19346 (16)0.0489 (5)
C60.28210 (9)0.66826 (9)0.16482 (15)0.0466 (4)
H60.2660300.6657870.0972790.056*
C70.26323 (9)0.62402 (9)0.24257 (13)0.0431 (4)
C80.21674 (9)0.57300 (9)0.22285 (14)0.0450 (4)
H80.2063290.5449070.2768030.054*
C90.12438 (8)0.50119 (9)0.03975 (14)0.0419 (4)
C100.08325 (11)0.47696 (11)0.16024 (16)0.0583 (5)
H100.0690810.4689640.2277640.070*
C110.05416 (9)0.44053 (9)0.07770 (15)0.0495 (5)
C120.00633 (11)0.39398 (11)0.09611 (18)0.0618 (6)
H120.0075800.3859540.1637660.074*
C130.01994 (11)0.36030 (12)0.0145 (2)0.0653 (6)
H130.0517150.3295410.0268240.078*
C140.00088 (11)0.37211 (11)0.08663 (19)0.0613 (6)
H140.0172490.3491510.1415870.074*
C150.04801 (9)0.41737 (10)0.10665 (16)0.0518 (5)
H150.0617120.4247910.1746000.062*
C160.07506 (8)0.45203 (9)0.02410 (14)0.0436 (4)
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
O10.0875 (12)0.0756 (11)0.0959 (14)0.0334 (9)0.0192 (11)0.0034 (10)
O20.0792 (11)0.0616 (9)0.0763 (11)0.0167 (8)0.0059 (9)0.0119 (8)
N10.0493 (9)0.0468 (8)0.0401 (8)0.0052 (7)0.0012 (7)0.0015 (6)
N20.0484 (8)0.0478 (8)0.0389 (8)0.0049 (7)0.0014 (6)0.0001 (6)
N30.0545 (9)0.0555 (9)0.0370 (8)0.0073 (7)0.0045 (7)0.0026 (7)
N40.0643 (11)0.0672 (11)0.0384 (9)0.0059 (9)0.0072 (7)0.0029 (7)
C10.0645 (12)0.0530 (11)0.0390 (10)0.0027 (9)0.0028 (9)0.0000 (8)
C20.0677 (13)0.0683 (13)0.0468 (11)0.0069 (11)0.0130 (10)0.0077 (10)
C30.0524 (11)0.0526 (11)0.0618 (13)0.0053 (9)0.0043 (9)0.0070 (10)
C40.0721 (16)0.0586 (14)0.102 (2)0.0146 (12)0.0114 (14)0.0070 (14)
C50.0494 (10)0.0438 (10)0.0536 (11)0.0002 (8)0.0060 (8)0.0025 (8)
C60.0502 (10)0.0493 (10)0.0403 (9)0.0006 (8)0.0005 (8)0.0002 (8)
C70.0467 (10)0.0458 (9)0.0367 (9)0.0010 (7)0.0009 (7)0.0037 (7)
C80.0525 (10)0.0474 (10)0.0350 (9)0.0031 (8)0.0020 (7)0.0007 (7)
C90.0436 (9)0.0447 (9)0.0373 (9)0.0029 (7)0.0008 (7)0.0002 (7)
C100.0649 (13)0.0685 (13)0.0415 (10)0.0071 (11)0.0099 (9)0.0010 (9)
C110.0471 (10)0.0550 (11)0.0465 (10)0.0004 (8)0.0040 (8)0.0026 (9)
C120.0569 (12)0.0717 (14)0.0567 (13)0.0090 (10)0.0100 (10)0.0075 (10)
C130.0556 (12)0.0673 (14)0.0729 (15)0.0142 (11)0.0042 (11)0.0060 (11)
C140.0557 (12)0.0623 (13)0.0660 (14)0.0090 (10)0.0052 (10)0.0041 (11)
C150.0529 (11)0.0546 (11)0.0480 (11)0.0040 (9)0.0013 (9)0.0014 (9)
C160.0411 (9)0.0457 (10)0.0441 (10)0.0028 (7)0.0018 (7)0.0000 (7)
Geometric parameters (Å, º) top
O1—C31.375 (3)C5—C61.361 (3)
O1—C41.412 (3)C6—C71.410 (3)
O2—C51.385 (2)C6—H60.9300
O2—C41.425 (3)C7—C81.452 (3)
N1—C81.282 (2)C8—H80.9300
N1—N21.403 (2)C9—C161.457 (3)
N2—C91.308 (2)C10—C111.434 (3)
N3—C91.361 (2)C10—H100.9300
N3—N41.364 (2)C11—C161.397 (3)
N3—H30.8600C11—C121.403 (3)
N4—C101.289 (3)C12—C131.371 (3)
C1—C21.389 (3)C12—H120.9300
C1—C71.392 (3)C13—C141.389 (3)
C1—H10.9300C13—H130.9300
C2—C31.359 (3)C14—C151.378 (3)
C2—H20.9300C14—H140.9300
C3—C51.385 (3)C15—C161.397 (3)
C4—H4A0.9700C15—H150.9300
C4—H4B0.9700
C3—O1—C4105.94 (18)C1—C7—C8117.84 (17)
C5—O2—C4105.36 (18)C6—C7—C8122.25 (16)
C8—N1—N2112.83 (15)N1—C8—C7122.66 (17)
C9—N2—N1111.74 (15)N1—C8—H8118.7
C9—N3—N4127.26 (16)C7—C8—H8118.7
C9—N3—H3116.4N2—C9—N3124.01 (17)
N4—N3—H3116.4N2—C9—C16119.91 (16)
C10—N4—N3115.84 (17)N3—C9—C16116.08 (16)
C2—C1—C7122.22 (19)N4—C10—C11124.95 (18)
C2—C1—H1118.9N4—C10—H10117.5
C7—C1—H1118.9C11—C10—H10117.5
C3—C2—C1116.66 (19)C16—C11—C12119.59 (19)
C3—C2—H2121.7C16—C11—C10118.10 (18)
C1—C2—H2121.7C12—C11—C10122.31 (19)
C2—C3—O1128.2 (2)C13—C12—C11120.1 (2)
C2—C3—C5121.96 (19)C13—C12—H12119.9
O1—C3—C5109.88 (19)C11—C12—H12119.9
O1—C4—O2109.22 (19)C12—C13—C14120.0 (2)
O1—C4—H4A109.8C12—C13—H13120.0
O2—C4—H4A109.8C14—C13—H13120.0
O1—C4—H4B109.8C15—C14—C13120.9 (2)
O2—C4—H4B109.8C15—C14—H14119.5
H4A—C4—H4B108.3C13—C14—H14119.5
C6—C5—O2128.04 (19)C14—C15—C16119.52 (19)
C6—C5—C3122.52 (18)C14—C15—H15120.2
O2—C5—C3109.43 (18)C16—C15—H15120.2
C5—C6—C7116.73 (17)C11—C16—C15119.81 (17)
C5—C6—H6121.6C11—C16—C9117.76 (17)
C7—C6—H6121.6C15—C16—C9122.43 (17)
C1—C7—C6119.91 (17)
C8—N1—N2—C9171.01 (16)C6—C7—C8—N10.6 (3)
C9—N3—N4—C100.2 (3)N1—N2—C9—N33.8 (3)
C7—C1—C2—C30.5 (3)N1—N2—C9—C16176.73 (14)
C1—C2—C3—O1179.5 (2)N4—N3—C9—N2179.39 (18)
C1—C2—C3—C50.3 (3)N4—N3—C9—C161.1 (3)
C4—O1—C3—C2178.2 (2)N3—N4—C10—C110.4 (3)
C4—O1—C3—C51.9 (3)N4—C10—C11—C160.1 (3)
C3—O1—C4—O23.8 (3)N4—C10—C11—C12179.6 (2)
C5—O2—C4—O14.2 (3)C16—C11—C12—C130.4 (3)
C4—O2—C5—C6178.1 (2)C10—C11—C12—C13179.9 (2)
C4—O2—C5—C33.0 (2)C11—C12—C13—C140.2 (4)
C2—C3—C5—C60.2 (3)C12—C13—C14—C150.2 (4)
O1—C3—C5—C6179.64 (18)C13—C14—C15—C160.2 (3)
C2—C3—C5—O2179.1 (2)C12—C11—C16—C150.3 (3)
O1—C3—C5—O20.7 (2)C10—C11—C16—C15179.82 (18)
O2—C5—C6—C7179.09 (18)C12—C11—C16—C9179.46 (18)
C3—C5—C6—C70.4 (3)C10—C11—C16—C91.0 (3)
C2—C1—C7—C60.7 (3)C14—C15—C16—C110.0 (3)
C2—C1—C7—C8178.53 (19)C14—C15—C16—C9179.12 (18)
C5—C6—C7—C10.6 (3)N2—C9—C16—C11179.03 (17)
C5—C6—C7—C8178.62 (17)N3—C9—C16—C111.5 (2)
N2—N1—C8—C7178.01 (16)N2—C9—C16—C150.1 (3)
C1—C7—C8—N1178.68 (18)N3—C9—C16—C15179.37 (17)
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
N3—H3···N10.862.242.596 (2)105
N3—H3···N2i0.862.283.013 (2)143
C8—H8···N1ii0.932.623.517 (2)162
Symmetry codes: (i) y1/4, x+3/4, z1/4; (ii) y+3/4, x+1/4, z+1/4.
 

Acknowledgements

The authors thank the Single Crystal XRD Facility at VIT, Vellore, Tamil Nadu, India, for providing the instrumentation and support necessary for this study.

References

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