research communications
A second orthorhombic polymorph of 4-{[(1E,2E)-3-(4-methoxyphenyl)prop-2-en-1-ylidene]amino}-1,5-dimethyl-2-phenyl-1H-pyrazol-3(2H)-one
aPG and Research Department of Physics, Srimad Andavan Arts and Science College (Autonomous), Affiliated to Bharathidasan University, Tiruchirappalli - 620 005, Tamil Nadu, India, bDepartment of Physics, Swami Dayananda College of Arts and Science, Affiliated to Bharathidasan University, Manjakkudi - 612 610, Tamil Nadu, India, cDepartment of Physics, Annapoorana Engineering College (Autonomous), Salem - 636308, Tamil Nadu, India, dNanophotonics Laboratory, Department of Physics, Bharathidasan University, Tiruchirappalli - 620 024, Tamil Nadu, India, eCrystal Growth and Thin Film Laboratory, Department of Physics, Bharathidasan University, Tiruchirappalli - 620 024, Tamil Nadu, India, fChemistry Department, University of Fribourg, Chemin du Musée 9, CH-1700 Fribourg, Switzerland, and gInstitute of Physics, University of Neuchâtel, Rue Emile-Argand 11, CH-2000 Neuchâtel, Switzerland
*Correspondence e-mail: [email protected], [email protected]
The second orthorhombic polymorph of the title compound, C21H21N3O2, (I), crystallizes in space group Pna21, compared to Pbca for the first orthorhombic polymorph (Ii) [Obasi et al. (2016
). J. Mol. Struct. 1120, 180–186]. The difference in the structure of the two polymorphs resides in the orientation of the 4-methoxy moiety of the (4-methoxyphenyl)allylidene unit with respect to the phenyl ring to which it is attached. Compound (I) also exhibits rotational disorder of the phenyl ring of the 4-aminoantipyrine moiety. In the crystal of (I), the molecules are linked by C—H⋯O and C—H⋯N hydrogen bonds, forming a three-dimensional network. The conformations, Hirshfeld surfaces, and two-dimensional fingerprint plots of the two polymorphs and closely related structures are compared.
Keywords: crystal structure; 4-aminoantipyrine; acrylaldehyde; polymorphism; positional disorder; hydrogen bonding; Hirshfeld surface; fingerprint plots.
CCDC reference: 2527948
1. Chemical context
4-Aminoantipyrine (C11H13N3O; 4-AAP) has been used to form a large number of Schiff base compounds by condensation with an aldehyde or a ketone. A search of the Cambridge Structural Database (CSD, Version 6.01, update November 2025; Groom et al., 2016
) for Schiff base organic compounds involving 4-AAP gave over 240 hits. The vast majority of such Schiff bases involve substituted benzaldehydes.
Aguilar-Llanos et al., (2022
; 2023
) have described the synthesis of a number of Schiff base compounds involving cinnamaldehydes. As they explained, the use of such aldehydes results in the presence of an extensive double-bond conjugated system via the amino group of 4-AAP. These compounds were shown to have potential biological activity and could be useful in optical applications (Ani et al., 2021
; Arroudj et al., 2016
). The structure of the unsubstituted (phenyl)prop-2-en-1-ylidene derivative (II) (CSD refcode: FEVBUE) has been reported on by Li & Zhang (2005
). More recently Aguilar-Llanos et al. (2023
) have described the crystal structures, Hirshfeld surface analyses and biological activities of four Schiff base compounds involving various substituted cinnamaldehydes. They include the 4-AAP derivatives of [4-(dimethylamino)phenyl]prop-2-en-1-ylidene (III: MODGUL) and (4-nitrophenyl)prop-2-en-1-ylidene (IV: MODHEW).
As part of our ongoing research into the chemistry of 4-AAP derivatives (Shankar et al., 2023
), we now describe the structure of a second orthorhombic polymorph of compound (I). The structure of this polymorph is compared to that of the first orthorhombic polymorph (Ii), described by Obasi et al. (2016
), and to that of compound (II), and in part to (III) and (IV).
2. Structural commentary
The title compound, C21H21N3O2 (I), was synthesized by the condensation of 4-aminoantipyrine with 3-(4-methoxyphenyl)acrylaldehyde and single crystals were grown by recrystallization from a methanol solution. It crystallizes in the orthorhombic space group Pna21. The molecular structure of (I) is illustrated in Fig. 1
. Selected geometrical parameters for (I) and related compounds are given in Table 1
. An earlier report of the crystal structure of the title compound indicated that it had crystallized in the orthorhombic space group Pbca (Ii) [CSD refcode AMIDa IL; Obasi et al., 2016
], which was also recrystallized from methanol solution. A comparison of calculated densities for (I) (1.241 g cm−3) and (Ii) (1.257 g cm−3) suggests that the latter may be the more stable polymorph.
|
| | Figure 1 A view of the molecular structure of the title compound, polymorph I, with displacement ellipsoids drawn at the 50% probability level. The minor component atoms of the positionally disordered phenyl ring (atoms C6B—C11B) are shown in pale green. |
A significant feature of the of (I) is the positional disorder of the 2-phenyl ring of 4-AAP, see Fig. 1
. The occupancies of atoms C6–C11 and their attached H atoms disordered over two sets of sites were refined, giving an occupancy of 0.77 (1) for the major component (atoms C6A–C11A), and 0.23 (1) for the minor component (atoms C6B–C11B). The two rings were refined as regular hexagons and are inclined to each other by 68.5 (6)°. Such disorder in 4-AAP derivatives has been observed previously (Kant et al., 2013
; Tahir et al., 2025
).
The difference in the structure of the two polymorphs resides in the orientation of the 4-methoxy moiety (–O2—C23) of the (4-methoxyphenyl)allylidene unit with respect to ring P3 (C17–C22). This difference is illustrated in Fig. 2
, a view of the structural overlap of polymorph (I) (major component of the 4-AAP phenyl ring, atoms C6A–C11A) and polymorph (Ii). It can be seen that bond O2—C23 is cis with respect to the carbonyl bond C3=O1 in (I) but trans in (Ii); see Fig. 2
. The same group (atoms C20—O2—C23) is inclined to the mean plane of ring P3 (C17—C22) by 8.4 (5)° in (I) and 4.9 (2)° in (Ii).
| | Figure 2 A view of the structural overlap of polymorph I (blue; major component, atoms C6A–C11A) and polymorph Ii (red) [r.m.s. 0.137 Å; Mercury (Macrae et al., 2020 |
In the molecule of (I), there is an intramolecular C—H⋯O hydrogen bond forming an S(6) ring motif (C14—H14⋯O1; Table 2
). The allylidine–amino chain (atoms N3 to C17) has an E,E configuration about bonds N3=C14 and C15=C16. This configuration is the same for all five structures. The N=C and C=C bond lengths are very similar in the two polymorphs, (I) and (Ii). It can be seen that the N=C bond length varies from 1.282 (3) Å in (IV) to 1.294 (6) Å in (I). The C=C bond length [atoms C15=C16 in (I)] is 1.338 (6) Å, similar to the value in (Ii) but slightly longer than the values for compounds (II), (III) and (IV).
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An analysis using Mercury (Macrae et al., 2020
) of these two bond lengths was carried out for 87 compounds containing the (1E,2E)-N-methyl-3-phenylprop-2-en-1-imine moiety found in the CSD. It revealed that the N=C bond length varies from 1.256 to 1.316 Å, with an average value of 1.280 (15) Å (median value of 1.277 Å, skewness 0.877). The C=C bond length varies from 1.305 to 1.376 Å, with an average value of 1.334 (9) Å (median value of 1.333 Å, skewness 0.858). Hence, the values for all five compounds described here lie within these limits. The main difference is in the N=C bond length which is longer in (I) and (Ii) compared to the values for (II), (III) and (IV) (Table 1
).
Various dihedral angles in structures (I), (Ii) (II), (III) and (IV) are compared in Table 1
. The conformation of (I) is similar to that of compounds (II), (III) and (IV). Polymorph (Ii) is the odd one out with for example, the P1 to P3 dihedral angle being the largest at 25.1 (1)°, compared to 2.1 (2)° in (I). A view of the structural overlap of (I) and (II) (Fig. 3
a) and of (Ii) and (II) (Fig. 3
b) illustrates this situation.
| Figure 3 (a) A view of the structural overlap of I (blue; major component, atoms C6A–C11A) and II (green) [r.m.s. 0.0448 Å; Mercury (Macrae et al., 2020 |
3. Supramolecular features
In the crystal of (I), the molecules are linked by C—H⋯O hydrogen bonds (Table 2
) forming zigzag chains propagating along the a-axis direction. The molecules are also linked by C—H⋯N hydrogen bonds about the screw axis parallel to the c-axis direction. The combination of these non-classical hydrogen bonds results in the formation of a three-dimensional network, as shown in Fig. 4
.
| Figure 4 A view along the c-axis of the crystal packing of polymorph I, showing the hydrogen bonds as dashed lines (Table 2 |
4. Hirshfeld surface analysis and two-dimensional fingerprint plots
The Hirshfeld surface analyses and the associated two-dimensional fingerprint plots were performed with CrystalExplorer17 (Spackman et al., 2021
), following the protocol of Tan et al. (2019
). The electrostatic potential and Hirshfeld surfaces for polymorphs (I) and (Ii) and compound (II) are illustrated in Fig. 5
. For (I), ring P2 comprises the major component viz. atoms C6A–C11A. The presence of prominent red spots indicate that short contacts are particularly significant in the crystal packing of all three compounds. The various contributions to the HS of the short contacts in the crystals structures of all five compounds, (I), (Ii) (II), (III) and (IV), are compared in Table S1 of the supporting information. As mentioned above, Aguilar-Llanos et al. (2023
) have analysed the crystal structures and the Hirshfeld surfaces and two-dimensional fingerprint plots of compounds (III) and (IV).
| Figure 5 (a) The electrostatic potential surface of polymorphs I (major component, atoms C6A–C11A) and Ii and compound II, mapped over colour ranges −0.09 to 0.05, −0.07 to 0.05, and −0.09 to 0.06 au., respectively; (b) the Hirshfeld surface of polymorphs I and Ii and compound II, mapped over dnorm in the colour ranges −0.16 to 1.37, −0.21 to 1.28, and −0.30 to 1.91 au., respectively. |
The full two-dimensional fingerprint plots for (I), (Ii) and (II) are given in Fig. 6
. In all three compounds the H⋯H contacts have a major contribution to the Hirshfeld surface, varying from 49.4% in (Ii) to 52.8% in (I). The second most significant contribution is from the C⋯H/H⋯C contacts that vary from 27.6% in (I) to 33.7% in (II). The N⋯H/H⋯N contacts in (I) and (Ii) are very similar 5.7 cf. 5.8%, while being 5.2% in (II). For (I) and (II), these contacts have sharp pincer-like peaks at de + di ≃ 2.5 and 2.42 Å. respectively. The most significant difference concerns the contributions of the O⋯H/H⋯O contacts, which are 10.7% in (I) and (Ii), while in the absence of the methoxy group in (II) it is only 7.6%. However, in (II) the O⋯H/H⋯O contacts have sharp pincer-like spikes at de + di ≃ 2.2 Å. Similar sharp pincer-like spikes are also observed in (Ii) but at a longer distance, de + di ≃ 2.35Å. The C⋯C contacts contribute 1.4% in (I) but only 0.2% in (Ii) and 0.7% in (II). Other contacts in general contribute less than 1%. The contributions of the various contacts can be correlated with the hydrogen bonds and other interatomic interactions in the crystal structures of the three compounds.
| Figure 6 The full two-dimensional fingerprint plots for polymorphs I (major component, atoms C6A–C11A) and Ii and compound II, and those delineated into H⋯H, C⋯H/H⋯C, N⋯H/H⋯N and O⋯H/H⋯O contacts. |
5. Synthesis
To a methanolic solution of 4-aminoantipyrine (1 mmol), prepared in a round-bottom flask, 4-methoxycinnamaldehyde (1 mmol) dissolved in 20 ml of methanol was added dropwise under continuous stirring at room temperature. The reaction mixture was stirred for 15 min and subsequently heated under reflux for 8 h, to ensure completion of the condensation reaction. After reflux, the mixture was allowed to cool slowly to room temperature, leading to the formation of a brown precipitate. The resulting solid was collected by filtration and washed several times with cold methanol to remove unreacted starting materials and impurities, affording the desired product in pure form. Yellow prismatic crystals of (I) were obtained by dissolving the purified compound in methanol and allowing the solution to undergo slow evaporation at room temperature over a period of ca. 10 days. FTIR (KBr pellet, cm−1); 1602 C=N stretch, 1635 C=O stretch, 1570 C=C stretch, 1022 C—O stretch. UV/vis (ethanol solution, nm): 240, 359. For further spectroscopic details and TGA/DTA and second-harmonic generation studies, see the supporting information.
6. Refinement details
Crystal data, data collection and structure details are summarized in Table 3
. The C-bound H atoms were included in calculated positions and refined as riding atoms; C—H = 0.95–0.98 Å, Uiso(H) = 1.5Ueq(C-methyl) and 1.2Ueq(C) for other H atoms. The occupancies of the positionally disordered 2-phenyl ring of 4-AAP were refined giving 0.77 (1) for the major component (atoms C6A–C11A), compared to 0.23 (1) for the minor component (atoms C6B–C11B). The two rings were refined as regular hexagons i.e. rigid groups with a C—C separation of 1.39 Å. The structure was refined as a two-component [BASF = −0.26 (6); this value has no physical meaning].
|
Supporting information
CCDC reference: 2527948
contains datablocks I, Global. DOI: https://doi.org/10.1107/S2056989026001039/hb8194sup1.cif
Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S2056989026001039/hb8194Isup2.hkl
Table S1. Relative percentage contributions (%) of close contacts to the Hirshfeld surfaces of compounds I, Ii, II, III and IV. FTIR spectroscopic analysis of I. UV-Vis spectroscopic analysis of I. 1H NMR spectrum of I. Thermogravimetric analysis (TGA-black) and (DTA-blue) of I. Optical limiting behaviour of I. DOI: https://doi.org/10.1107/S2056989026001039/hb8194sup3.pdf
Supporting information file. DOI: https://doi.org/10.1107/S2056989026001039/hb8194Isup4.cml
| C21H21N3O2 | Dx = 1.241 Mg m−3 |
| Mr = 347.41 | Cu Kα radiation, λ = 1.54186 Å |
| Orthorhombic, Pna21 | Cell parameters from 24601 reflections |
| a = 9.4079 (4) Å | θ = 4.0–66.6° |
| b = 11.0918 (5) Å | µ = 0.65 mm−1 |
| c = 17.8194 (10) Å | T = 250 K |
| V = 1859.46 (16) Å3 | Prism, yellow |
| Z = 4 | 0.47 × 0.38 × 0.24 mm |
| F(000) = 736 |
| Stoe Stadivari diffractometer | 3050 independent reflections |
| Radiation source: Primux 100 micro | 2818 reflections with I > 2σ(I) |
| Graded multilayer mirror monochromator | Rint = 0.049 |
| Detector resolution: 5.81 pixels mm-1 | θmax = 66.8°, θmin = 4.7° |
| rotation method, ω scans | h = −7→11 |
| Absorption correction: analytical (X-Red32 and LANA; Stoe, 2024) | k = −13→12 |
| Tmin = 0.713, Tmax = 0.841 | l = −21→18 |
| 14750 measured reflections |
| Refinement on F2 | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| R[F2 > 2σ(F2)] = 0.067 | H-atom parameters constrained |
| wR(F2) = 0.190 | w = 1/[σ2(Fo2) + (0.1392P)2 + 0.1581P] where P = (Fo2 + 2Fc2)/3 |
| S = 1.10 | (Δ/σ)max < 0.001 |
| 3050 reflections | Δρmax = 0.25 e Å−3 |
| 270 parameters | Δρmin = −0.22 e Å−3 |
| 1 restraint | Absolute structure: Refined as an inversion twin |
| Primary atom site location: dual | Absolute structure parameter: −0.2 (6) |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refined as a 2-component inversion twin. |
| x | y | z | Uiso*/Ueq | Occ. (<1) | |
| O1 | 0.4835 (6) | 0.7889 (4) | 0.3359 (2) | 0.1123 (15) | |
| O2 | 0.3128 (4) | 0.8986 (4) | 0.9176 (2) | 0.0900 (10) | |
| N1 | 0.7078 (4) | 0.5527 (3) | 0.2924 (2) | 0.0703 (10) | |
| N2 | 0.6255 (4) | 0.6510 (4) | 0.2727 (2) | 0.0762 (10) | |
| N3 | 0.6049 (4) | 0.6491 (3) | 0.4744 (2) | 0.0685 (9) | |
| C3 | 0.5660 (5) | 0.7032 (4) | 0.3371 (3) | 0.0756 (11) | |
| C4 | 0.6249 (4) | 0.6350 (4) | 0.3980 (2) | 0.0639 (9) | |
| C5 | 0.7130 (4) | 0.5493 (4) | 0.3678 (3) | 0.0698 (11) | |
| C6A | 0.5847 (6) | 0.6725 (5) | 0.1993 (2) | 0.071 (4) | 0.766 (9) |
| C7A | 0.5829 (8) | 0.7907 (4) | 0.1734 (3) | 0.102 (3) | 0.766 (9) |
| H7A | 0.614095 | 0.853680 | 0.204576 | 0.122* | 0.766 (9) |
| C8A | 0.5348 (9) | 0.8157 (3) | 0.1013 (3) | 0.130 (5) | 0.766 (9) |
| H8A | 0.533573 | 0.895605 | 0.083709 | 0.156* | 0.766 (9) |
| C9A | 0.4887 (9) | 0.7226 (4) | 0.0551 (3) | 0.120 (4) | 0.766 (9) |
| H9A | 0.456169 | 0.739466 | 0.006371 | 0.144* | 0.766 (9) |
| C10A | 0.4905 (6) | 0.6044 (4) | 0.0811 (3) | 0.090 (2) | 0.766 (9) |
| H10A | 0.459288 | 0.541400 | 0.049899 | 0.108* | 0.766 (9) |
| C11A | 0.5386 (6) | 0.5794 (3) | 0.1532 (3) | 0.0718 (15) | 0.766 (9) |
| H11A | 0.539810 | 0.499473 | 0.170765 | 0.086* | 0.766 (9) |
| C6B | 0.5808 (14) | 0.6869 (16) | 0.1980 (6) | 0.056 (10) | 0.234 (9) |
| C7B | 0.4422 (12) | 0.6887 (16) | 0.1711 (7) | 0.079 (6) | 0.234 (9) |
| H7B | 0.367754 | 0.658140 | 0.200724 | 0.095* | 0.234 (9) |
| C8B | 0.4136 (11) | 0.7357 (16) | 0.1004 (8) | 0.086 (6) | 0.234 (9) |
| H8B | 0.319782 | 0.736937 | 0.082192 | 0.103* | 0.234 (9) |
| C9B | 0.5236 (15) | 0.7809 (18) | 0.0566 (8) | 0.091 (9) | 0.234 (9) |
| H9B | 0.504239 | 0.812671 | 0.008769 | 0.109* | 0.234 (9) |
| C10B | 0.6623 (13) | 0.7791 (17) | 0.0835 (8) | 0.097 (8) | 0.234 (9) |
| H10B | 0.736669 | 0.809607 | 0.053878 | 0.116* | 0.234 (9) |
| C11B | 0.6909 (11) | 0.7320 (16) | 0.1542 (8) | 0.080 (6) | 0.234 (9) |
| H11B | 0.784645 | 0.730810 | 0.172410 | 0.096* | 0.234 (9) |
| C12 | 0.8165 (5) | 0.5041 (6) | 0.2436 (4) | 0.0872 (14) | |
| H12A | 0.779970 | 0.498881 | 0.192791 | 0.131* | |
| H12B | 0.843321 | 0.424322 | 0.260830 | 0.131* | |
| H12C | 0.899041 | 0.556477 | 0.244410 | 0.131* | |
| C13 | 0.8049 (6) | 0.4635 (6) | 0.4089 (4) | 0.0947 (16) | |
| H13C | 0.776602 | 0.461012 | 0.461201 | 0.142* | |
| H13B | 0.903133 | 0.489498 | 0.405302 | 0.142* | |
| H13A | 0.795296 | 0.383807 | 0.387074 | 0.142* | |
| C14 | 0.5131 (5) | 0.7256 (4) | 0.5000 (3) | 0.0684 (10) | |
| H14 | 0.459088 | 0.772354 | 0.466572 | 0.082* | |
| C15 | 0.4937 (5) | 0.7391 (4) | 0.5792 (3) | 0.0706 (11) | |
| H15 | 0.553421 | 0.694939 | 0.611326 | 0.085* | |
| C16 | 0.3955 (5) | 0.8107 (4) | 0.6102 (3) | 0.0680 (10) | |
| H16 | 0.336416 | 0.853271 | 0.576916 | 0.082* | |
| C17 | 0.3704 (4) | 0.8300 (4) | 0.6898 (3) | 0.0643 (10) | |
| C18 | 0.4329 (5) | 0.7606 (4) | 0.7469 (3) | 0.0679 (10) | |
| H18 | 0.492218 | 0.695758 | 0.733660 | 0.081* | |
| C19 | 0.4103 (5) | 0.7843 (4) | 0.8206 (3) | 0.0726 (11) | |
| H19 | 0.453081 | 0.735269 | 0.857201 | 0.087* | |
| C20 | 0.3238 (4) | 0.8809 (4) | 0.8430 (3) | 0.0694 (10) | |
| C21 | 0.2578 (5) | 0.9483 (5) | 0.7886 (3) | 0.0756 (12) | |
| H21 | 0.196974 | 1.011891 | 0.802261 | 0.091* | |
| C22 | 0.2811 (5) | 0.9224 (4) | 0.7131 (3) | 0.0722 (11) | |
| H22 | 0.234755 | 0.969173 | 0.676519 | 0.087* | |
| C23 | 0.2406 (8) | 1.0053 (7) | 0.9419 (4) | 0.108 (2) | |
| H23A | 0.286399 | 1.075518 | 0.920300 | 0.162* | |
| H23B | 0.244078 | 1.010390 | 0.996189 | 0.162* | |
| H23C | 0.142273 | 1.002178 | 0.925572 | 0.162* |
| U11 | U22 | U33 | U12 | U13 | U23 | |
| O1 | 0.149 (4) | 0.119 (2) | 0.069 (2) | 0.066 (3) | 0.005 (2) | −0.003 (2) |
| O2 | 0.087 (2) | 0.120 (3) | 0.063 (2) | 0.0125 (19) | 0.0072 (15) | −0.0088 (18) |
| N1 | 0.0553 (18) | 0.086 (2) | 0.070 (2) | 0.0112 (15) | 0.0025 (15) | −0.0163 (17) |
| N2 | 0.078 (2) | 0.087 (2) | 0.063 (3) | 0.0124 (18) | 0.0048 (18) | −0.0074 (17) |
| N3 | 0.0570 (19) | 0.082 (2) | 0.067 (2) | 0.0018 (15) | −0.0002 (15) | −0.0026 (16) |
| C3 | 0.079 (3) | 0.088 (2) | 0.059 (3) | 0.016 (2) | 0.004 (2) | −0.003 (2) |
| C4 | 0.055 (2) | 0.075 (2) | 0.062 (2) | −0.0016 (16) | 0.0017 (16) | −0.0056 (17) |
| C5 | 0.055 (2) | 0.080 (2) | 0.074 (3) | 0.0029 (17) | −0.0045 (18) | −0.012 (2) |
| C6A | 0.072 (8) | 0.074 (5) | 0.067 (9) | −0.011 (4) | 0.017 (6) | −0.006 (4) |
| C7A | 0.157 (9) | 0.076 (4) | 0.073 (4) | −0.032 (4) | 0.025 (4) | −0.010 (3) |
| C8A | 0.240 (15) | 0.083 (5) | 0.067 (5) | −0.010 (6) | 0.024 (6) | 0.007 (4) |
| C9A | 0.204 (13) | 0.098 (6) | 0.058 (5) | 0.020 (7) | −0.009 (6) | −0.004 (4) |
| C10A | 0.110 (5) | 0.092 (4) | 0.067 (4) | −0.005 (4) | −0.007 (3) | −0.010 (3) |
| C11A | 0.073 (3) | 0.074 (3) | 0.068 (4) | −0.007 (2) | 0.004 (3) | −0.003 (2) |
| C6B | 0.06 (2) | 0.082 (18) | 0.027 (17) | −0.008 (13) | −0.012 (14) | 0.003 (11) |
| C7B | 0.045 (9) | 0.107 (14) | 0.085 (14) | −0.015 (8) | 0.013 (8) | 0.001 (11) |
| C8B | 0.068 (12) | 0.114 (16) | 0.076 (15) | −0.004 (11) | −0.017 (10) | −0.009 (12) |
| C9B | 0.064 (13) | 0.102 (19) | 0.11 (2) | −0.011 (12) | −0.027 (13) | −0.004 (17) |
| C10B | 0.082 (14) | 0.14 (2) | 0.072 (15) | −0.008 (14) | −0.001 (11) | 0.027 (13) |
| C11B | 0.053 (10) | 0.104 (14) | 0.084 (14) | −0.023 (9) | 0.006 (8) | 0.004 (11) |
| C12 | 0.066 (3) | 0.110 (3) | 0.085 (3) | 0.012 (2) | 0.012 (2) | −0.020 (3) |
| C13 | 0.083 (3) | 0.118 (4) | 0.084 (4) | 0.032 (3) | −0.008 (2) | −0.011 (3) |
| C14 | 0.064 (2) | 0.083 (2) | 0.058 (2) | 0.0054 (19) | −0.0010 (17) | −0.0024 (19) |
| C15 | 0.060 (2) | 0.084 (2) | 0.068 (3) | 0.0046 (18) | −0.0050 (17) | −0.0026 (19) |
| C16 | 0.058 (2) | 0.085 (2) | 0.061 (2) | 0.0032 (17) | −0.0047 (17) | −0.0020 (19) |
| C17 | 0.0499 (18) | 0.077 (2) | 0.066 (3) | −0.0021 (15) | −0.0020 (17) | −0.0028 (18) |
| C18 | 0.066 (2) | 0.074 (2) | 0.064 (2) | 0.0031 (18) | −0.0038 (18) | −0.0079 (19) |
| C19 | 0.071 (2) | 0.081 (2) | 0.066 (3) | 0.0005 (19) | −0.002 (2) | 0.0011 (19) |
| C20 | 0.056 (2) | 0.089 (2) | 0.063 (3) | −0.0050 (18) | 0.0051 (16) | −0.006 (2) |
| C21 | 0.055 (2) | 0.095 (3) | 0.077 (3) | 0.0094 (19) | 0.0006 (19) | −0.008 (2) |
| C22 | 0.057 (2) | 0.091 (3) | 0.069 (3) | 0.0066 (18) | −0.0058 (18) | −0.003 (2) |
| C23 | 0.108 (5) | 0.137 (5) | 0.079 (4) | 0.024 (4) | 0.013 (3) | −0.027 (3) |
| O1—C3 | 1.227 (6) | C9B—C10B | 1.3900 |
| O2—C20 | 1.349 (6) | C9B—H9B | 0.9400 |
| O2—C23 | 1.431 (7) | C10B—C11B | 1.3900 |
| N1—C5 | 1.344 (6) | C10B—H10B | 0.9400 |
| N1—N2 | 1.382 (6) | C11B—H11B | 0.9400 |
| N1—C12 | 1.447 (6) | C12—H12A | 0.9700 |
| N2—C6A | 1.383 (5) | C12—H12B | 0.9700 |
| N2—C3 | 1.402 (6) | C12—H12C | 0.9700 |
| N2—C6B | 1.451 (10) | C13—H13C | 0.9700 |
| N3—C14 | 1.294 (6) | C13—H13B | 0.9700 |
| N3—C4 | 1.382 (6) | C13—H13A | 0.9700 |
| C3—C4 | 1.435 (7) | C14—C15 | 1.430 (6) |
| C4—C5 | 1.372 (6) | C14—H14 | 0.9400 |
| C5—C13 | 1.479 (7) | C15—C16 | 1.338 (6) |
| C6A—C7A | 1.3900 | C15—H15 | 0.9400 |
| C6A—C11A | 1.3900 | C16—C17 | 1.454 (6) |
| C7A—C8A | 1.3900 | C16—H16 | 0.9400 |
| C7A—H7A | 0.9400 | C17—C22 | 1.388 (6) |
| C8A—C9A | 1.3900 | C17—C18 | 1.405 (6) |
| C8A—H8A | 0.9400 | C18—C19 | 1.355 (7) |
| C9A—C10A | 1.3900 | C18—H18 | 0.9400 |
| C9A—H9A | 0.9400 | C19—C20 | 1.403 (6) |
| C10A—C11A | 1.3900 | C19—H19 | 0.9400 |
| C10A—H10A | 0.9400 | C20—C21 | 1.373 (7) |
| C11A—H11A | 0.9400 | C21—C22 | 1.394 (7) |
| C6B—C7B | 1.3900 | C21—H21 | 0.9400 |
| C6B—C11B | 1.3900 | C22—H22 | 0.9400 |
| C7B—C8B | 1.3900 | C23—H23A | 0.9700 |
| C7B—H7B | 0.9400 | C23—H23B | 0.9700 |
| C8B—C9B | 1.3900 | C23—H23C | 0.9700 |
| C8B—H8B | 0.9400 | ||
| C20—O2—C23 | 117.0 (4) | C9B—C10B—H10B | 120.0 |
| C5—N1—N2 | 107.3 (3) | C11B—C10B—H10B | 120.0 |
| C5—N1—C12 | 124.4 (4) | C10B—C11B—C6B | 120.0 |
| N2—N1—C12 | 122.4 (4) | C10B—C11B—H11B | 120.0 |
| N1—N2—C6A | 122.2 (4) | C6B—C11B—H11B | 120.0 |
| N1—N2—C3 | 109.9 (4) | N1—C12—H12A | 109.5 |
| C6A—N2—C3 | 126.2 (4) | N1—C12—H12B | 109.5 |
| N1—N2—C6B | 127.8 (8) | H12A—C12—H12B | 109.5 |
| C3—N2—C6B | 121.4 (8) | N1—C12—H12C | 109.5 |
| C14—N3—C4 | 120.8 (4) | H12A—C12—H12C | 109.5 |
| O1—C3—N2 | 123.9 (5) | H12B—C12—H12C | 109.5 |
| O1—C3—C4 | 131.7 (4) | C5—C13—H13C | 109.5 |
| N2—C3—C4 | 104.4 (4) | C5—C13—H13B | 109.5 |
| C5—C4—N3 | 123.1 (4) | H13C—C13—H13B | 109.5 |
| C5—C4—C3 | 107.5 (4) | C5—C13—H13A | 109.5 |
| N3—C4—C3 | 129.3 (4) | H13C—C13—H13A | 109.5 |
| N1—C5—C4 | 110.5 (4) | H13B—C13—H13A | 109.5 |
| N1—C5—C13 | 122.2 (4) | N3—C14—C15 | 120.2 (4) |
| C4—C5—C13 | 127.2 (5) | N3—C14—H14 | 119.9 |
| N2—C6A—C7A | 118.8 (4) | C15—C14—H14 | 119.9 |
| N2—C6A—C11A | 121.1 (4) | C16—C15—C14 | 123.9 (4) |
| C7A—C6A—C11A | 120.0 | C16—C15—H15 | 118.0 |
| C6A—C7A—C8A | 120.0 | C14—C15—H15 | 118.0 |
| C6A—C7A—H7A | 120.0 | C15—C16—C17 | 127.1 (4) |
| C8A—C7A—H7A | 120.0 | C15—C16—H16 | 116.5 |
| C9A—C8A—C7A | 120.0 | C17—C16—H16 | 116.5 |
| C9A—C8A—H8A | 120.0 | C22—C17—C18 | 116.2 (4) |
| C7A—C8A—H8A | 120.0 | C22—C17—C16 | 119.8 (4) |
| C8A—C9A—C10A | 120.0 | C18—C17—C16 | 123.9 (4) |
| C8A—C9A—H9A | 120.0 | C19—C18—C17 | 121.9 (4) |
| C10A—C9A—H9A | 120.0 | C19—C18—H18 | 119.0 |
| C11A—C10A—C9A | 120.0 | C17—C18—H18 | 119.0 |
| C11A—C10A—H10A | 120.0 | C18—C19—C20 | 121.0 (5) |
| C9A—C10A—H10A | 120.0 | C18—C19—H19 | 119.5 |
| C10A—C11A—C6A | 120.0 | C20—C19—H19 | 119.5 |
| C10A—C11A—H11A | 120.0 | O2—C20—C21 | 125.6 (4) |
| C6A—C11A—H11A | 120.0 | O2—C20—C19 | 115.9 (4) |
| C7B—C6B—C11B | 120.0 | C21—C20—C19 | 118.5 (5) |
| C7B—C6B—N2 | 126.3 (9) | C20—C21—C22 | 119.8 (4) |
| C11B—C6B—N2 | 113.5 (8) | C20—C21—H21 | 120.1 |
| C8B—C7B—C6B | 120.0 | C22—C21—H21 | 120.1 |
| C8B—C7B—H7B | 120.0 | C17—C22—C21 | 122.4 (4) |
| C6B—C7B—H7B | 120.0 | C17—C22—H22 | 118.8 |
| C7B—C8B—C9B | 120.0 | C21—C22—H22 | 118.8 |
| C7B—C8B—H8B | 120.0 | O2—C23—H23A | 109.5 |
| C9B—C8B—H8B | 120.0 | O2—C23—H23B | 109.5 |
| C10B—C9B—C8B | 120.0 | H23A—C23—H23B | 109.5 |
| C10B—C9B—H9B | 120.0 | O2—C23—H23C | 109.5 |
| C8B—C9B—H9B | 120.0 | H23A—C23—H23C | 109.5 |
| C9B—C10B—C11B | 120.0 | H23B—C23—H23C | 109.5 |
| C5—N1—N2—C6A | −172.2 (4) | C8A—C9A—C10A—C11A | 0.0 |
| C12—N1—N2—C6A | 33.8 (7) | C9A—C10A—C11A—C6A | 0.0 |
| C5—N1—N2—C3 | −6.0 (5) | N2—C6A—C11A—C10A | 176.3 (6) |
| C12—N1—N2—C3 | −160.0 (5) | C7A—C6A—C11A—C10A | 0.0 |
| C5—N1—N2—C6B | −175.2 (8) | N1—N2—C6B—C7B | 114.3 (11) |
| C12—N1—N2—C6B | 30.8 (9) | C3—N2—C6B—C7B | −53.7 (14) |
| N1—N2—C3—O1 | −176.9 (5) | N1—N2—C6B—C11B | −71.2 (11) |
| C6A—N2—C3—O1 | −11.4 (8) | C3—N2—C6B—C11B | 120.8 (9) |
| C6B—N2—C3—O1 | −7.0 (10) | C11B—C6B—C7B—C8B | 0.0 |
| N1—N2—C3—C4 | 3.6 (5) | N2—C6B—C7B—C8B | 174.1 (17) |
| C6A—N2—C3—C4 | 169.1 (5) | C6B—C7B—C8B—C9B | 0.0 |
| C6B—N2—C3—C4 | 173.6 (7) | C7B—C8B—C9B—C10B | 0.0 |
| C14—N3—C4—C5 | −175.1 (4) | C8B—C9B—C10B—C11B | 0.0 |
| C14—N3—C4—C3 | 6.7 (7) | C9B—C10B—C11B—C6B | 0.0 |
| O1—C3—C4—C5 | −179.3 (6) | C7B—C6B—C11B—C10B | 0.0 |
| N2—C3—C4—C5 | 0.1 (5) | N2—C6B—C11B—C10B | −174.8 (15) |
| O1—C3—C4—N3 | −0.8 (9) | C4—N3—C14—C15 | 180.0 (4) |
| N2—C3—C4—N3 | 178.6 (4) | N3—C14—C15—C16 | −176.0 (4) |
| N2—N1—C5—C4 | 6.1 (5) | C14—C15—C16—C17 | −179.3 (4) |
| C12—N1—C5—C4 | 159.4 (4) | C15—C16—C17—C22 | 169.0 (4) |
| N2—N1—C5—C13 | −173.2 (5) | C15—C16—C17—C18 | −10.3 (7) |
| C12—N1—C5—C13 | −19.8 (8) | C22—C17—C18—C19 | −1.6 (6) |
| N3—C4—C5—N1 | 177.6 (4) | C16—C17—C18—C19 | 177.7 (4) |
| C3—C4—C5—N1 | −3.8 (5) | C17—C18—C19—C20 | −0.7 (7) |
| N3—C4—C5—C13 | −3.2 (7) | C23—O2—C20—C21 | −8.1 (7) |
| C3—C4—C5—C13 | 175.4 (5) | C23—O2—C20—C19 | 172.2 (5) |
| N1—N2—C6A—C7A | −141.3 (4) | C18—C19—C20—O2 | −177.7 (4) |
| C3—N2—C6A—C7A | 54.9 (6) | C18—C19—C20—C21 | 2.6 (6) |
| N1—N2—C6A—C11A | 42.3 (6) | O2—C20—C21—C22 | 178.3 (4) |
| C3—N2—C6A—C11A | −121.5 (5) | C19—C20—C21—C22 | −2.0 (6) |
| N2—C6A—C7A—C8A | −176.4 (5) | C18—C17—C22—C21 | 2.1 (6) |
| C11A—C6A—C7A—C8A | 0.0 | C16—C17—C22—C21 | −177.2 (4) |
| C6A—C7A—C8A—C9A | 0.0 | C20—C21—C22—C17 | −0.3 (7) |
| C7A—C8A—C9A—C10A | 0.0 |
| D—H···A | D—H | H···A | D···A | D—H···A |
| C14—H14···O1 | 0.94 | 2.35 | 3.020 (6) | 128 |
| C12—H12C···O1i | 0.97 | 2.50 | 3.232 (8) | 133 |
| C10A—H10A···N3ii | 0.94 | 2.58 | 3.511 (6) | 173 |
| Symmetry codes: (i) x+1/2, −y+3/2, z; (ii) −x+1, −y+1, z−1/2. |
| For (I) (major component of ring P2, atoms C6A–C11A). Mean plane P1 (N1/N2/C3–C5), mean plane P2 (C6–C11) and mean plane P3 (C17–C22); see Scheme 1. |
| Bond | (I) | (Iia) | (IIb) | (IIIc) | (IVc) |
| N═C | 1.294 (6) | 1.2908 (6) | 1.2805 (3) | 1.288 (3) | 1.282 (3) |
| C═C | 1.338 (6) | 1.3388 (1) | 1.3282 (3) | 1.326 (3) | 1.326 (4) |
| Dihedral angle | (I) | (Iia) | (IIb) | (IIIc) | (IVc) |
| P1 to P2 | 49.8 (3) | 33.0 (1) | 54.7 (1) | 48.4 (1) | 54.1 (1) |
| P1 to P3 | 2.1 (2) | 25.1 (1) | 9.6 (1) | 12.7 (1) | 5.3 (1) |
| P2 to P3 | 48.7 (3) | 21.3 (1) | 61.9 (1) | 56.7 (1) | 59.3 (1) |
| References: (a) Obasi et al. (2016); (b) Li & Zhang (2005); (c) Aguilar-Llanos et al. (2023). |
Footnotes
‡Professor Emerita.
Acknowledgements
HSE is grateful to the University of Neuchâtel for their support over the years.
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