research communications\(\def\hfill{\hskip 5em}\def\hfil{\hskip 3em}\def\eqno#1{\hfil {#1}}\)

Journal logoCRYSTALLOGRAPHIC
COMMUNICATIONS
ISSN: 2056-9890

A serendipitous product of the reaction of famotidine with copper(II)

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aQuímica Inorgánica, Departamento Estrella Campos, Facultad de Química, Universidad de la República, Montevideo, Uruguay, and bInstituto de Física de São Carlos, Universidade de São Paulo, IFSC - USP, 13566-590, São Carlos, SP, Brazil
*Correspondence e-mail: [email protected]

Edited by K. V. Domasevitch, National Taras Shevchenko University of Kyiv, Ukraine (Received 30 March 2026; accepted 10 April 2026; online 24 April 2026)

Reaction of CuCl2 and the anti-ulcer drug famotidine in aqueous solution results in hydrolytic cleavage of the organic mol­ecules with loss of sulfonamide fragments and subsequent crystallization of a new Cu complex, di­chlorido­{3-[(2-guanidino­thia­zol-4-yl)methyl­sulfan­yl]propanoic acid}copper(II) monohydrate, [CuCl2(C8H12N4O2S2)]·H2O (1). The CuII ions adopt a square-pyramidal environment with the basal plane comprising one chloride ion and the organic ligand acting as the N,N,S-donor bis-chelate tridentate group. The second chloride ion resides in the apical position and it completes the electrically neutral complex. The supra­molecular landscape is dominated by conventional hydrogen bonding involving strong hydrogen-bond donors and acceptors [O(N)H⋯O and O(N)H⋯Cl], which assemble the complex units and solvent water mol­ecules into bilayers parallel to the bc plane. The primary significance of the contacts with H atoms was assessed with the results of Hirshfeld analysis, which suggest a 51.3% contribution of such contacts to the surface of individual complex mol­ecules. The relatively short chalcogenide bonds [S⋯O = 3.006 (2) Å] and NH2 (guanidine)-π inter­actions are also relevant to the packing. The chemical identity of 1 and the bulk sample is confirmed by elemental analysis, IR spectroscopic and thermogravimetric data.

1. Chemical context

During the COVID pandemic many researchers found themselves looking to contribute to the search of active compounds against the coronavirus. One of the strategies used was based on drug repositioning. In this context, H2 receptor antagonists were targeted as potential active drugs. Famotidine is an example of the latter, since it is generally used to reduce gastric acid secretion by blocking histamine action on parietal cells and is also given before surgery to lower the risk of postoperative nausea and aspiration pneumonia (Brunton et al., 2018View full citation). Moreover, famotidine is a IV class drug (low solubility-low permeability) and this has attracted attention for studies on its solid form modification, as well as for strategies exploiting the coordination potential of the famotidine mol­ecule, which bears a set of donor atoms for bonding with metal ions. In particular, during the 1990s potentiometric studies confirmed the ligand properties of famotidine (Kozłowski et al., 1992View full citation; Kubiak et al., 1996View full citation). In a subsequent search of new metal–famotidine complexes, an improved pharmacological effect was found with coordination to ZnII (Arya et al., 2010View full citation). A family of famotidine complexes is useful for other treatments. For instance, ZnII (Amin et al., 2010View full citation), CuII (Kozłowski et al., 1992View full citation) and CoIII complexes (Miodragović et al., 2006View full citation) were deemed to be potential anti­fungal and anti­microbial agents.

[Scheme 1]

Following these studies, we have designed a synthetic procedure to obtain a new coordination compound containing famotidine and copper(II). However, even under relatively mild conditions, the reaction at 333 K for 45 min and at a pH of 3, gave a copper(II) complex with the acid-catalyzed hydrolysis product of famotidine, namely the corresponding (alkyl­thio)­propanoic acid obtained by a nucleophilic attack at the sulfamoyl group. This acid is expected to be one of the degradation products under gastric conditions (Suleiman et al., 1989View full citation). The hydrolysis products of famotidine have been deemed inactive as H2 antagonists (Saikia et al., 2019View full citation) and have never been structurally characterized. However, the accumulation of these degradation products on waste and natural waters have become a problem, making it necessary to find alternatives to treat contaminated waters (Karpińska et al., 2010View full citation; Molla et al., 2017View full citation). Structural knowledge of these degradation products contributes to the development of more efficient materials for the removal of these persistent contaminants.

We describe here the crystal structure of the title compound 1 with an emphasis on performing a critical comparative analysis with the available CuII (Kubiak et al., 1996View full citation) and NiII (Russo et al., 2021View full citation) complexes with famotidine ligands. Although the hydrolysis degradation product of famotidine in stomach conditions has already been described (Suleiman et al., 1989View full citation), there are no structural reports on such particular species or the coordination compounds thereof.

2. Structural commentary

Previous reports on the behavior of copper(II) in aqueous solution with famotidine at low pH (Kozłowski et al., 1992View full citation; Kubiak et al., 1996View full citation) indicated the formation of a stable 1:1 complex with an electrically neutral famotidine coordinated in a tetra­dentate manner through aminic-N, thia­zolic-N, sulfide-S and amidinic-N atoms (Kubiak et al., 1996View full citation). Under similar conditions we were able to obtain a copper(II) complex containing a neutral famotidine hydrolysis product (Fig. 1[link]), coordinated in a tridentate manner through the terminal aminic-N, thia­zolic-N and sulfide-S atoms. The asymmetric unit with numbering scheme for non-H atoms is presented in Fig. 2[link]. The copper(II) atom in 1 adopts a square-pyramidal coordination geometry, as indicated by the low τ value of 0.12, which is close to the value of zero expected for an idealized square pyramid (Addison et al., 1984View full citation). The four basal positions are occupied by the ligand and atom Cl1 whereas the second chloride Cl2 resides at the apex of the pyramid. This may be compared with the structure of the CuII perchlorate complex with famotidine, where the metal ion coordination exhibits a square-planar geometry fully completed with the organic ligand N- and S-donors (Kubiak et al., 1996View full citation).

[Figure 1]
Figure 1
Synthetic scheme for the obtained CuII complex involving in situ hydrolytic fragmentation of famotidine.
[Figure 2]
Figure 2
Mol­ecular structure of 1 showing displacement ellipsoids drawn at 50% probability level and the atom-labeling scheme.

Further insights into the electronic and protolytic features of the ligand are possible when comparing selected bond distances with those for the related famotidine (polymorph A; CSD refcode: FOGVIG08; Saikia et al., 2019View full citation) and its CuII complex (TAWVIW; Kubiak et al., 1996View full citation) (Table 1[link]). First, it is worth mentioning that the C—N distances in the guanidine moiety change due to a charge and proton redistribution (Russo et al., 2021View full citation). In the famotidine structure, both N3 and N4 are doubly protonated and singly bonded to C4, whereas N3 is deprotonated due to the formation of a double bond with C4. This attribution is slightly nominal due to the evident contribution of charge-separated canonical forms, e.g. N2—C4=N4H2+, as evidenced by a perceptible Bader charge at the N2 atom in famotidine [−1.04; Overgaard & Hibbs, 2004View full citation]. However, the electronic effects imposed by the coordination are clearly visible. Upon coordination, N4 stays doubly protonated; meanwhile, N2 and N3 are both monoprotonated. The electronic effect is reflected in the shortening of the N3—C4 distance and the perceptible increase in the N2—C4 distance. The N1—C1 distances are similar in the organic mol­ecule and both CuII complexes, and as well the coordination through the sulfide-S atom has only minor reflectance in the bond lenghts of the sulfur–aliphatic linkage. For the outer C—NH2 group of the coordinated guanidine fragment, the corresponding N4—C4 bond is also less sensitive to the coordination, being actually the same for 1 and the parent famotidine [1.346 (4) and 1.3425 (4) Å, respectively]. One can postulate that this fragment retains certain double bonding C4 N4 and a partial positive charge, which are inherent to the guanidine structure.

Table 1
Selected bond lengths (Å) for 1 and related famotidine structures

  FOGVIG08 TAWVIW This structure
Cu1—N1 1.940 (3) 1.959 (2)
Cu1—N3 1.926 (3) 1.946 (2)
Cu1—S2 2.347 (1) 2.3609 (7)
Cu1—Cl1 2.2508 (7)
Cu1—Cl2 2.7164 (8)
N1—C1 1.3234 (4) 1.297 (4) 1.310 (4)
N1—C3 1.3858 (4) 1.399 (4) 1.391 (3)
N2—C1 1.3548 (4) 1.370 (4) 1.373 (4)
N2—C4 1.3390 (3) 1.370 (4) 1.391 (3)
N3—C4 1.3392 (4) 1.286 (5) 1.293 (4)
N4—C4 1.3425 (4) 1.329 (5) 1.346 (4)
C5—C3 1.4919 (4) 1.488 (6) 1.493 (4)
C5—S2 1.8320 (4) 1.831 (4) 1.822 (3)

3. Spectroscopic and thermogravimmetric analysis

In order to ascertain the chemical identity of 1 and the bulk sample, we have performed elemental analysis, infrared spectroscopy and thermogravimetric studies. The IR spectra of 1 (Fig. 3[link]) were analysed by comparing with the previous literature data for a detailed FTIR study of famotidine based on DFT results (Sagdinc et al., 2005View full citation) and reports on NiII–famotidine complexes (Russo et al., 2021View full citation).

[Figure 3]
Figure 3
FTIR spectra for famotidine (black) and 1 (blue).

There is sufficient evidence for the ligand structure, its difference from the parent famotidine and its coordination fashion in 1. The most relevant features in the IR spectra of 1 include:

· The appearance of carbonyl stretching bands together with the disappearance of bands related to the SO2 group in the sulfonyl fragment in famotidine. Strong sharp peaks at 1710 cm−1 and 1252 cm−1 for 1 correspond to the C=O and C—O stretching modes and their appearance confirms the formation of a terminal carboxyl­ate group. Bands reflecting stretching of the S—O bonds at 1150, 720 and 640 cm−1 for famotidine, disappear in the spectra of 1.

· Modifications in the bands related to the NH2 groups in guanidine and sulfonyl fragments. The bands at 3230 cm−1 related to NH2 and CH2 stretching that can be assigned to the sulfonyl moiety, disappear in the spectra of 1. At the same time, the bands at 3500 and 3390 cm−1 in famotidine, which make a large contribution to the vibrational modes of the amino groups both in the guanidine and sulfonyl moieties, yield an absorption centered at 3440 cm−1 for 1. This is consistent with the changes discussed for the C4—N3 and N2 bond distances upon coordination. The observed decrease in intensity may be attributed to the loss of the sulfonyl moiety in 1.

· Thia­zole and sulfide band modifications. The stretching of the CH2—S2 bond is reflected by bands at 2925 cm−1 in famotidine and 2850 cm−1 in 1, evidencing the coordination through S2. The C—N stretching in the guanidine fragment goes from 1680 cm−1 in famotidine to 1710 and 1660 cm−1 in the complex. Deformation vibrational modes in the thia­zole fragment move from 1280 and 820 cm−1 in famotidine to 1250 and 790 cm−1, respectively, in 1. The small shift in frequencies is consistent with the observed variations in bond distances in the thia­zole group upon coordination.

Thermal stability and water content for the obtained solid were assessed through thermogravimetry. Fig. 4[link] presents the TGA plot for 1, with the weight loss including three distinct steps. The first step, from 303 to 457 K, corresponds to 4.18% mass loss and it indicates elimination of the solvate water mol­ecules (calculated 4.36%). The second step, in the range of from 457–673 K, coincides with the weight loss of 42.64%. It may be ascribed to the rupture of the S2—C3 bond and consequent loss of a thiopropionate fragment of the ligand (calculated 45.85%), similarly to the previously reported NiII–famotidine complex (Russo et al., 2021View full citation). Further decomposition of the remaining metal-organic material is observed above 770 K.

[Figure 4]
Figure 4
TGA curve corresponding to 1.

4. Database survey

A Cambridge Structural Database (CSD, Version 2023.3.1; Groom et al., 2016View full citation) search for coordination compounds containing the guanidine-thia­zole fragment yielded four results, which are copper(II) famotidine complex (TAWVIW; Kubiak et al., 1996View full citation), a monodeprotonated famotidine cobalt(III) complex (XELLEG; Miodragović et al., 2006View full citation) and two nickel(II) complexes (BEVQAV01, ODAFEI; Russo et al., 2021View full citation). In all cases, the famotidine was coordinated through one terminal aminic-N atom, a thia­zole-N atom and a sulfide-S atom, similarly to the main famotidine fragment preserved by the organic ligand in the structure of 1. A detailed comparative analysis of the effect of the differences in the ligand with the copper(II)–famotidine crystal structure (TAWVIW) in the supra­molecular inter­actions landscape is presented in the next section. There are no entries with the products of hydrolytic degradation of famotidine or their metal complexes in the CSD.

5. Supra­molecular features and comparative Hirshfeld surface analysis

With a rich set of conventional hydrogen-bond donors and acceptors, the structure is maintained by an intricate and extended hydrogen-bonding landscape involving the carboxyl­ate groups, the solvate water mol­ecules, the coordinated chlorides and aminic-N atoms that is listed in Table 2[link].

Table 2
Hydrogen-bond geometry (Å, °)

D—H⋯A D—H H⋯A DA D—H⋯A
O1—H1O⋯O1Wi 0.88 (2) 1.72 (2) 2.577 (3) 165 (4)
O1W—H1W⋯Cl2 0.85 (5) 2.31 (5) 3.134 (3) 164 (4)
O1W—H2W⋯Cl1ii 0.88 (6) 2.20 (6) 3.075 (3) 175 (5)
N2—H1N⋯Cl2iii 0.85 (2) 2.32 (2) 3.150 (2) 165 (3)
N3—H2N⋯O2iv 0.86 (2) 2.20 (2) 3.020 (3) 159 (4)
N4—H4N⋯O2iv 0.86 (2) 2.27 (3) 3.002 (3) 143 (3)
C5—H5B⋯Cl1v 0.94 (4) 2.77 (4) 3.560 (3) 142 (3)
Symmetry codes: (i) Mathematical equation; (ii) Mathematical equation; (iii) Mathematical equation; (iv) Mathematical equation; (v) Mathematical equation.

It is possible to distinguish the hydrogen-bonded layers parallel to the bc plane that pack in an anti-aligned fashion forming a bilayer. Fig. 5[link](a) presents a view along the a axis with inter­molecular inter­actions indicated as dashed lines. No ππ inter­actions involving solely the thia­zole moieties were found in the structure, similarly to the pattern present in the copper(II)–famotidine complex (Kubiak et al., 1996View full citation). The inter­molecular inter­actions driving the formation of the single layer are centered mostly in the carb­oxy­lic acid group of the ligand. The carbonyl-O atom acts as a bifurcated acceptor for the N3—H2N⋯O2ii and N4—H4N⋯O2ii bonds involving the guanidine aminic-NH donors of a contiguous complex [symmetry code: (ii) x, −y + Mathematical equation, z + Mathematical equation]. The corresponding geometry parameters are consistent with a medium strength hydrogen bond [N⋯O distances are 3.002 (3) and 3.020 (3) Å; Desiraju & Steiner, 1999View full citation]. A much stronger bond is associated with the acidic H atom and aqua acceptor, with a corresponding O1⋯O1Wi distance of 2.577 (3) Å and nearly straight angle at the H atom [symmetry code: (i) −x + 1, −y + 1, −z + 1].

[Figure 5]
Figure 5
Principal inter­molecular inter­actions in the structure of 1: (a) fragment of the layer parallel to the bc plane, with a set of H-bond and chalcogen inter­actions and (b) Reciprocal hydrogen-bonding and NH2/thia­zole stacking inter­actions, which result in an anti-aligned packing with the formation of the bilayers.

A remarkable feature of the structure is the presence of a chalcogen-type S⋯O inter­action involving the thia­zole-S atoms. Such chalcogenide sites are usually electron deficient and produce directional σ-holes that can give rise to a special kind of inter­molecular inter­action with the most negatively polarized atoms. The systematic study of chalcogen inter­actions has produced a set of expected geometrical descriptors. They are distances below the sum of the van der Waals radii (3.35 Å for S and O atoms) and an O⋯S—Caromatic angle of about 160 ° (Zhang et al., 2015View full citation), which perfectly fit the observed parameters for 1: S1⋯O1 = 3.007 (2) Å and C1—S1⋯O1 = 164.87 (11) °. No such contacts are present in famotidine itself. This may further indicate the impact of thia­zole N-coordination on the distribution of the π-electron density, which enhances the ability of S atoms for hypervalent bonding.

The function of the apical chloride ion Cl2 as a multiple hydrogen-bond acceptor is shown in Fig. 5[link](b). It is not surprising that the number of conventional hydrogen-bond inter­actions in this case is larger than the one found for the equatorial chloride Cl1 (three and two, respectively), since the weakly coordinated Cl2 is more underbonded and basic. All these NH⋯Cl2 and OH⋯Cl2 inter­actions are relatively strong and directional (Table 2[link]), being the primary forces for sustaining pairwise association of two inversion-related complexes (symmetry code: −x + 1, −y + 1, −z + 2) and subsequent maintenance of the bilayer structure. This association is also favorable for the formation of reciprocal stacking, with the guanidine N4 atoms situated exactly above the neighboring thia­zole ring centroids Cg at 3.246 (3) Å and with the angle subtended by the N4⋯Cg axis to the ring normal being 2.8 (2)°. We regard this remarkable inter­action as a kind of cation–π bonding (Yamada, 2020View full citation), which involves positively polarized C4 N4H2δ+ fragment of guanidine and thia­zole as the efficient π-donor. For comparison, in the famotidine polymorph B, the π-cloud of thia­zole functions as an acceptor of C—H⋯π hydrogen bonds (Overgaard & Hibbs, 2004View full citation).

The adjacent bilayers are related by translation along the a-axis direction in the crystal and are separated by ca 6.89 Å [i.e. asin(180 – β)]. There are no strong conventional inter­actions between the bilayers, while the shortest observed contacts represent typical weak hydrogen bonding C5—H5B⋯Cl1(−x + 2, y − Mathematical equation, −z + Mathematical equation) = 3.560 (3) Å, with the angle at the H-atom of 142 (3)° (Desiraju & Steiner, 1999View full citation), which engages the most polarized and acidic (thia­zole-4)CH2 hydrogen atoms (Fig. 6[link]).

[Figure 6]
Figure 6
Structure of 1 viewed down the b axis showing a single layer in the bc plane (a), the formation of the bilayer by dense stack of two anti-aligned layers (b) and the packing of the bilayers (c).

To rationalize our findings, the inter­molecular inter­actions were also analyzed by inspection of Hirshfeld surfaces. The most remarkable feature in the structure packing is that 51.3% of the surface for the individual complex mol­ecule corresponds to contacts involving an H atom and an electronegative one (H⋯Cl, H⋯O and H⋯S with 24.7, 14.8 and 11.8% contributions, respectively). On the other hand, 25.2% correspond to H⋯H contacts, while 8.7% indicate C⋯N (4.4%) and C⋯H (4.3%) contacts. The significance of S⋯O inter­actions is also appreciable. In spite of the relatively small number of such contacts, they deliver a 2.9% contribution to the surface of the mol­ecule. The results of the analysis are summarized in Fig. 7[link]. These data suggest a potentially higher solubility of 1 in polar solvents compared to copper(II)–famotidine complexes.

[Figure 7]
Figure 7
Hirshfeld surface mapped with dnorm around the copper(II) complex in 1 (top) and two-dimensional fingerprint plots for all inter­actions in the structure, and H⋯Cl/Cl⋯H and H⋯O/O⋯H contributions (bottom).

6. Experimental details

A 30 mL aqueous solution containing 30 mg of pure famotidine (0.089 mmol) at a pH of approximately 3 was mixed with 15 mg of dihydrated copper(II) chloride (0.089 mmol). Upon complete dissolution, the mixture was constantly stirred at 333 K for 45 min before being left to slowly evaporate. Suitable plate-shaped dark-green crystals (yield: 84%) were obtained by slow evaporation of the solvent at room temperature (298 K) for a period of two weeks until the volume reduced to approximately 20 mL.

Elemental analysis for: CuCl2C8H14N4O3S2. Experimental/calculated are: %C 23.71/23.82, %N 13.74/13.58, %H 3.67/3.39 and %S 15.26/15.53.

Elemental analysis for C, N, H, and S was performed on a Thermo Scientific Flash 2000 analyzer. FTIR was recorded as 1% KBr disks on a Shimadzu IR Prestige 21 spectrometer. The thermogram was recorded using a Shimadzu TA-50 equipment, with Pt cells, on a 50 mL min−1 air flow in the temperature range of 298–973 K and heating rate of 10 °C min−1.

7. Refinement

Crystal data, data collection and structure refinement details are summarized in Table 3[link]. The structure presents a typical example of non-merohedral twinning, the primary signs of which were systematically Fo2 >> Fc2, but mostly for the reflections with |h| = 3n. The HKLF5 file was produced after reflection merging. The use of twin law (1 0 0 0 − 1 0 − 0.678 0 − 1), with partial population factors of 0.787 and 0.213, reduced the R1 [for I > 2σ(I)] value from 8.34 to 3.23%. All hydrogen atoms were located and refined with isotropic thermal parameters. In the case of NH and carb­oxy­lic OH H atoms, soft restraints in the bond distances were applied [N—H = 0.87 (2) Å; O—H = 0.85 (2) Å].

Table 3
Experimental details

Crystal data
Chemical formula [CuCl2(C8H12N4O2S2)]·H2O
Mr 412.79
Crystal system, space group Monoclinic, P21/c
Temperature (K) 100
a, b, c (Å) 6.9498 (2), 12.3041 (2), 17.4871 (3)
β (°) 97.742 (2)
V3) 1481.71 (6)
Z 4
Radiation type Cu Kα
μ (mm−1) 8.16
Crystal size (mm) 0.1 × 0.08 × 0.04
 
Data collection
Diffractometer XtaLAB Synergy, Dualflex, HyPix
Absorption correction Multi-scan (CrysAlis PRO; Rigaku OD, 2023View full citation)
Tmin, Tmax 0.480, 0.722
No. of measured, independent and observed [I > 2σ(I)] reflections 3019, 3019, 2850
Rint 0.048
(sin θ/λ)max−1) 0.625
 
Refinement
R[F2 > 2σ(F2)], wR(F2), S 0.032, 0.089, 1.06
No. of reflections 3019
No. of parameters 238
No. of restraints 5
H-atom treatment All H-atom parameters refined
Δρmax, Δρmin (e Å−3) 0.47, −0.41
Computer programs: CrysAlis PRO (Rigaku OD, 2023View full citation), OLEX2.solve (Bourhis et al., 2015View full citation), SHELXL2019/3 (Sheldrick, 2015View full citation) and OLEX2 (Dolomanov et al., 2009View full citation).

Supporting information


Computing details top

Dichlorido{3-[(2-guanidinothiazol-4-yl)methylsulfanyl]propanoic acid}copper(II) monohydrate top
Crystal data top
[CuCl2(C8H12N4O2S2)]·H2OF(000) = 836
Mr = 412.79Dx = 1.850 Mg m3
Monoclinic, P21/cCu Kα radiation, λ = 1.54184 Å
a = 6.9498 (2) ÅCell parameters from 9793 reflections
b = 12.3041 (2) Åθ = 4.4–79.0°
c = 17.4871 (3) ŵ = 8.16 mm1
β = 97.742 (2)°T = 100 K
V = 1481.71 (6) Å3Plate, green
Z = 40.1 × 0.08 × 0.04 mm
Data collection top
XtaLAB Synergy, Dualflex, HyPix
diffractometer
2850 reflections with I > 2σ(I)
Detector resolution: 10.0000 pixels mm-1Rint = 0.048
ω scansθmax = 74.5°, θmin = 6.3°
Absorption correction: multi-scan
(CrysAlisPro; Rigaku OD, 2023)
h = 88
Tmin = 0.480, Tmax = 0.722k = 015
3019 measured reflectionsl = 021
3019 independent reflections
Refinement top
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difmapo
R[F2 > 2σ(F2)] = 0.032Hydrogen site location: difference Fourier map
wR(F2) = 0.089All H-atom parameters refined
S = 1.06 w = 1/[σ2(Fo2) + (0.0387P)2 + 2.8736P]
where P = (Fo2 + 2Fc2)/3
3019 reflections(Δ/σ)max = 0.001
238 parametersΔρmax = 0.47 e Å3
5 restraintsΔρmin = 0.41 e Å3
Special details top

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.

Refinement. Refined as a 2-component twin. 1. Twinned data refinement Scales: 0.7872 (17) 0.2128 (17) 2. Restrained distances O1 H1O 0.85 with sigma of 0.02 3. Restrained distances N2-H1N 0.87 with sigma of 0.02 N3-H2N 0.87 with sigma of 0.02 N4-H3N = N4-H4A 0.87 with sigma of 0.02

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
Cu10.79627 (6)0.57610 (3)0.87235 (2)0.01287 (12)
Cl10.90647 (11)0.73350 (5)0.82907 (4)0.02036 (17)
Cl20.42378 (10)0.58562 (5)0.80174 (4)0.01679 (15)
S10.71946 (11)0.26257 (5)0.99449 (4)0.01626 (16)
S20.91571 (10)0.47886 (5)0.77229 (4)0.01399 (15)
O10.7376 (4)0.48044 (18)0.47891 (13)0.0327 (6)
H1O0.710 (7)0.520 (3)0.4370 (18)0.038 (12)*
O20.7431 (4)0.64087 (17)0.53879 (12)0.0241 (5)
O1W0.3475 (4)0.4351 (2)0.65624 (14)0.0268 (5)
N10.7547 (3)0.42958 (17)0.91076 (13)0.0123 (4)
N20.7349 (4)0.47102 (18)1.04258 (13)0.0141 (5)
N30.7696 (4)0.63279 (18)0.97427 (14)0.0141 (5)
N40.7286 (4)0.63440 (19)1.10461 (14)0.0164 (5)
C10.7383 (4)0.4008 (2)0.98174 (16)0.0128 (5)
C20.7330 (4)0.2443 (2)0.89740 (17)0.0166 (6)
C30.7500 (4)0.3403 (2)0.86181 (16)0.0138 (5)
C40.7449 (4)0.5837 (2)1.03759 (16)0.0128 (5)
C50.7572 (5)0.3621 (2)0.77828 (16)0.0163 (5)
C60.8126 (5)0.5490 (2)0.68516 (17)0.0164 (5)
C70.8063 (5)0.4781 (2)0.61432 (17)0.0200 (6)
C80.7594 (4)0.5430 (2)0.54087 (17)0.0166 (6)
H1W0.343 (7)0.476 (4)0.695 (3)0.039 (13)*
H2W0.280 (8)0.377 (4)0.663 (3)0.050 (14)*
H1N0.701 (5)0.444 (3)1.0832 (15)0.021 (9)*
H2N0.769 (6)0.7023 (16)0.981 (2)0.026 (10)*
H3N0.697 (5)0.596 (3)1.1416 (16)0.016 (9)*
H4N0.726 (6)0.7038 (16)1.108 (2)0.020 (9)*
H20.721 (6)0.178 (4)0.878 (3)0.035 (11)*
H5A0.639 (6)0.380 (3)0.752 (2)0.025 (10)*
H5B0.803 (5)0.301 (3)0.754 (2)0.017 (9)*
H6A0.687 (5)0.573 (3)0.690 (2)0.010 (8)*
H6B0.903 (6)0.604 (3)0.683 (2)0.029 (10)*
H7A0.713 (6)0.418 (3)0.614 (2)0.030 (11)*
H7B0.921 (7)0.443 (4)0.613 (3)0.042 (13)*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
Cu10.0190 (2)0.0086 (2)0.0116 (2)0.00177 (15)0.00407 (16)0.00069 (13)
Cl10.0301 (4)0.0117 (3)0.0212 (3)0.0060 (3)0.0104 (3)0.0006 (2)
Cl20.0181 (3)0.0175 (3)0.0152 (3)0.0013 (2)0.0040 (2)0.0031 (2)
S10.0271 (4)0.0088 (3)0.0131 (3)0.0013 (2)0.0033 (3)0.0026 (2)
S20.0182 (3)0.0125 (3)0.0117 (3)0.0004 (2)0.0032 (2)0.0013 (2)
O10.0666 (18)0.0163 (11)0.0150 (11)0.0059 (11)0.0041 (11)0.0004 (8)
O20.0421 (13)0.0119 (10)0.0172 (10)0.0018 (9)0.0001 (9)0.0015 (8)
O1W0.0348 (13)0.0255 (12)0.0187 (11)0.0063 (10)0.0012 (9)0.0006 (10)
N10.0149 (11)0.0096 (10)0.0124 (11)0.0014 (8)0.0019 (8)0.0001 (8)
N20.0214 (12)0.0102 (11)0.0109 (11)0.0007 (9)0.0034 (9)0.0014 (8)
N30.0205 (12)0.0082 (10)0.0139 (11)0.0012 (9)0.0029 (9)0.0016 (8)
N40.0249 (13)0.0120 (11)0.0125 (11)0.0003 (9)0.0038 (9)0.0001 (9)
C10.0147 (12)0.0103 (12)0.0131 (13)0.0001 (10)0.0010 (10)0.0015 (10)
C20.0259 (15)0.0104 (13)0.0140 (13)0.0002 (11)0.0042 (11)0.0006 (10)
C30.0150 (13)0.0103 (12)0.0160 (13)0.0004 (10)0.0021 (10)0.0006 (10)
C40.0128 (12)0.0101 (12)0.0149 (13)0.0000 (10)0.0000 (10)0.0001 (10)
C50.0224 (14)0.0099 (12)0.0169 (14)0.0006 (11)0.0038 (11)0.0016 (10)
C60.0222 (14)0.0125 (13)0.0147 (13)0.0026 (11)0.0032 (11)0.0020 (10)
C70.0333 (17)0.0129 (13)0.0143 (14)0.0034 (12)0.0051 (12)0.0018 (11)
C80.0214 (14)0.0135 (13)0.0156 (14)0.0013 (11)0.0047 (11)0.0002 (10)
Geometric parameters (Å, º) top
Cu1—N31.946 (2)N2—H1N0.847 (19)
Cu1—N11.959 (2)N3—C41.293 (4)
Cu1—Cl12.2508 (7)N3—H2N0.863 (19)
Cu1—S22.3609 (7)N4—C41.346 (4)
Cu1—Cl22.7164 (8)N4—H3N0.852 (19)
S1—C11.722 (3)N4—H4N0.856 (19)
S1—C21.728 (3)C2—C31.348 (4)
S2—C61.812 (3)C2—H20.89 (5)
S2—C51.822 (3)C3—C51.493 (4)
O1—C81.321 (4)C5—H5A0.91 (4)
O1—H1O0.881 (19)C5—H5B0.94 (4)
O2—C81.210 (4)C6—C71.511 (4)
O1W—H1W0.85 (5)C6—H6A0.94 (4)
O1W—H2W0.88 (6)C6—H6B0.92 (4)
N1—C11.310 (4)C7—C81.510 (4)
N1—C31.391 (3)C7—H7A0.98 (4)
N2—C11.373 (4)C7—H7B0.91 (5)
N2—C41.391 (3)
N3—Cu1—N188.81 (10)C3—C2—S1111.1 (2)
N3—Cu1—Cl194.49 (7)C3—C2—H2130 (3)
N1—Cu1—Cl1168.47 (7)S1—C2—H2119 (3)
N3—Cu1—S2161.24 (8)C2—C3—N1113.9 (2)
N1—Cu1—S282.57 (7)C2—C3—C5128.7 (3)
Cl1—Cu1—S290.99 (3)N1—C3—C5117.3 (2)
N3—Cu1—Cl2101.45 (8)N3—C4—N4124.4 (2)
N1—Cu1—Cl291.14 (7)N3—C4—N2122.2 (3)
Cl1—Cu1—Cl299.01 (3)N4—C4—N2113.4 (2)
S2—Cu1—Cl295.37 (3)C3—C5—S2107.35 (19)
C1—S1—C289.21 (13)C3—C5—H5A113 (3)
C6—S2—C5104.49 (14)S2—C5—H5A107 (3)
C6—S2—Cu1104.08 (10)C3—C5—H5B111 (2)
C5—S2—Cu194.67 (9)S2—C5—H5B111 (2)
C8—O1—H1O110 (3)H5A—C5—H5B108 (3)
H1W—O1W—H2W108 (5)C7—C6—S2112.3 (2)
C1—N1—C3111.8 (2)C7—C6—H6A109 (2)
C1—N1—Cu1127.55 (19)S2—C6—H6A110 (2)
C3—N1—Cu1120.56 (18)C7—C6—H6B109 (3)
C1—N2—C4124.9 (2)S2—C6—H6B101 (3)
C1—N2—H1N116 (3)H6A—C6—H6B114 (3)
C4—N2—H1N118 (3)C8—C7—C6111.8 (2)
C4—N3—Cu1131.06 (19)C8—C7—H7A109 (2)
C4—N3—H2N110 (3)C6—C7—H7A112 (2)
Cu1—N3—H2N118 (3)C8—C7—H7B109 (3)
C4—N4—H3N118 (2)C6—C7—H7B112 (3)
C4—N4—H4N122 (3)H7A—C7—H7B103 (4)
H3N—N4—H4N119 (4)O2—C8—O1123.7 (3)
N1—C1—N2125.2 (2)O2—C8—C7124.1 (3)
N1—C1—S1114.0 (2)O1—C8—C7112.2 (2)
N2—C1—S1120.8 (2)
C3—N1—C1—N2178.9 (3)Cu1—N1—C3—C56.2 (3)
Cu1—N1—C1—N24.5 (4)Cu1—N3—C4—N4180.0 (2)
C3—N1—C1—S10.9 (3)Cu1—N3—C4—N20.8 (4)
Cu1—N1—C1—S1175.70 (14)C1—N2—C4—N34.0 (4)
C4—N2—C1—N11.2 (4)C1—N2—C4—N4176.7 (3)
C4—N2—C1—S1178.6 (2)C2—C3—C5—S2146.7 (3)
C2—S1—C1—N10.5 (2)N1—C3—C5—S235.7 (3)
C2—S1—C1—N2179.3 (2)C6—S2—C5—C3146.7 (2)
C1—S1—C2—C30.1 (2)Cu1—S2—C5—C340.81 (19)
S1—C2—C3—N10.6 (3)C5—S2—C6—C759.6 (3)
S1—C2—C3—C5177.0 (2)Cu1—S2—C6—C7158.3 (2)
C1—N1—C3—C21.0 (4)S2—C6—C7—C8168.4 (2)
Cu1—N1—C3—C2175.9 (2)C6—C7—C8—O25.1 (5)
C1—N1—C3—C5177.0 (2)C6—C7—C8—O1174.7 (3)
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
O1—H1O···O1Wi0.88 (2)1.72 (2)2.577 (3)165 (4)
O1W—H1W···Cl20.85 (5)2.31 (5)3.134 (3)164 (4)
O1W—H2W···Cl1ii0.88 (6)2.20 (6)3.075 (3)175 (5)
N2—H1N···Cl2iii0.85 (2)2.32 (2)3.150 (2)165 (3)
N3—H2N···O2iv0.86 (2)2.20 (2)3.020 (3)159 (4)
N4—H4N···O2iv0.86 (2)2.27 (3)3.002 (3)143 (3)
C5—H5B···Cl1v0.94 (4)2.77 (4)3.560 (3)142 (3)
Symmetry codes: (i) x+1, y+1, z+1; (ii) x+1, y1/2, z+3/2; (iii) x+1, y+1, z+2; (iv) x, y+3/2, z+1/2; (v) x+2, y1/2, z+3/2.
Selected bond lengths (Å) for 1 and related famotidine structures top
FOGVIG08TAWVIWThis structure
Cu1—N11.940 (3)1.959 (2)
Cu1—N31.926 (3)1.946 (2)
Cu1—S22.347 (1)2.3609 (7)
Cu1—Cl12.2508 (7)
Cu1—Cl22.7164 (8)
N1—C11.3234 (4)1.297 (4)1.310 (4)
N1—C31.3858 (4)1.399 (4)1.391 (3)
N2—C11.3548 (4)1.370 (4)1.373 (4)
N2—C41.3390 (3)1.370 (4)1.391 (3)
N3—C41.3392 (4)1.286 (5)1.293 (4)
N4—C41.3425 (4)1.329 (5)1.346 (4)
C5—C31.4919 (4)1.488 (6)1.493 (4)
C5—S21.8320 (4)1.831 (4)1.822 (3)
 

Acknowledgements

The authors thank researcher Patrice Portugau for the collection of the thermogravimetric curve and Dr Gustavo Seoane from Universidad de la República, Uruguay, for the fruitful organic chemistry discussions.

Funding information

Funding for this research was provided by: Comisión Sectorial de Investigación Científica, Universidad de la República (grant to Bruno Rosa, Gianella Facchin, Natalia Alvarez); Programa de Desarrollo de las Ciencias Básicas (grant to Gianella Facchin, Natalia Alvarez); Fundação de Amparo à Pesquisa do Estado de São Paulo (grant to Javier Ellena).

References

Return to citationAddison, A. W., Rao, T. N., Reedijk, J., van Rijn, J. & Verschoor, G. C. (1984). J. Chem. Soc. Dalton Trans. pp. 1349–1356.  CSD CrossRef Web of Science Google Scholar
Return to citationAmin, M., Iqbal, M. S., Hughes, R. W., Khan, S. A., Reynolds, P. A., Enne, V. I., Sajjad-ur-Rahman & Mirza, A. S. (2010). J. Enzyme Inhib. Med. Chem. 25, 383–390.  Google Scholar
Return to citationArya, P., Singh, N., Gadi, R. & Chandra, S. (2010). J. Chem. Pharm. Res. 2(6), 253–257.  Google Scholar
Return to citationBourhis, L. J., Dolomanov, O. V., Gildea, R. J., Howard, J. A. K. & Puschmann, H. (2015). Acta Cryst. A71, 59–75.  Web of Science CrossRef IUCr Journals Google Scholar
Return to citationBrunton, L. L., Hilal-Dandan, R. & Knollmann, B. C. (2018). Editors. Goodman & Gilman's the pharmacological basis of therapeutics 13th ed. Columbus, OhioMcGraw-Hill Education.  Google Scholar
Return to citationDesiraju, G. R. & Steiner, T. (1999). The weak hydrogen bond in structural chemistry and biology. Oxford University Press.  Google Scholar
Return to citationDolomanov, O. V., Bourhis, L. J., Gildea, R. J., Howard, J. A. K. & Puschmann, H. (2009). J. Appl. Cryst. 42, 339–341.  Web of Science CrossRef CAS IUCr Journals Google Scholar
Return to citationGroom, C. R., Bruno, I. J., Lightfoot, M. P. & Ward, S. C. (2016). Acta Cryst. B72, 171–179.  Web of Science CrossRef IUCr Journals Google Scholar
Return to citationKarpińska, J., Sokół, A., Kobeszko, M., Starczewska, B., Czyżewska, U. & Hryniewicka, M. (2010). Toxicol. Environ. Chem. 92, 1409–1422.  Google Scholar
Return to citationKozłowski, H., Kowalik-Jankowska, T., Anouar, A., Decock, P., Spychala, J., Świątek, J. & Ganadu, M. L. (1992). J. Inorg. Biochem. 48, 233–240.  PubMed Google Scholar
Return to citationKubiak, M., Duda, A. M., Ganadu, M. L. & Kozlowski, H. (1996). J. Chem. Soc. Dalton Trans. pp. 1905–1908.  CrossRef Google Scholar
Return to citationMiodragović, D. U., Bogdanović, G. A., Miodragović, Z. M., Radulović, M. Đ., Novaković, S. B., Kaluđerović, G. N. & Kozłowski, H. (2006). J. Inorg. Biochem. 100, 1568–1574.  PubMed Google Scholar
Return to citationMolla, M. A. I., Tateishi, I., Furukawa, M., Katsumata, H., Suzuki, T. & Kaneco, S. (2017). Desalin. Water Treat. 87, 338–347.  CrossRef CAS Google Scholar
Return to citationOvergaard, J. & Hibbs, D. E. (2004). Acta Cryst. A60, 480–487.  Web of Science CSD CrossRef CAS IUCr Journals Google Scholar
Return to citationRigaku OD (2023). CrysAlis PRO. Rigaku Oxford Diffraction, Yarnton, England.  Google Scholar
Return to citationRusso, M. G., Clavijo, J. C. T., Alvarez, N., Baldoni, H. A., Brusau, E. V., Ellena, J. & Narda, G. E. (2021). J. Chem. Crystallogr. 51, 337–351.  CrossRef CAS Google Scholar
Return to citationSagdinc, S. & Bayarı, S. (2005). J. Mol. Struct. 744–747, 369–376.  CrossRef CAS Google Scholar
Return to citationSaikia, B., Sultana, N., Kaushik, T. & Sarma, B. (2019). Cryst. Growth Des. 19, 6472–6481.  CrossRef CAS Google Scholar
Return to citationSheldrick, G. M. (2015). Acta Cryst. C71, 3–8.  Web of Science CrossRef IUCr Journals Google Scholar
Return to citationSuleiman, M. S., Najib, N. M., Hassan, M. A. & Abdelhamid, M. (1989). Int. J. Pharm. 54, 65–69.  CrossRef CAS Google Scholar
Return to citationYamada, S. (2020). Coord. Chem. Rev. 415, 213301.  Web of Science CrossRef Google Scholar
Return to citationZhang, X., Gong, Z., Li, J. & Lu, T. (2015). J. Chem. Inf. Model. 55, 2138–2153.  Web of Science CrossRef CAS PubMed Google Scholar

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