research communications
Crystal and molecular structures of datiscetin and its monohydrate isolated from Datisca cannabina L.
aS. Yunusov Institute of the Chemistry of Plant Substances, Academy of Sciences of Uzbekistan, Mirzo Ulugbek Str. 77, Tashkent 100170, Uzbekistan
*Correspondence e-mail: [email protected]
The crystal structures of the flavonoid datiscetin [3,5,7-trihydroxy-2-(2-hydroxyphenyl)chromen-4-one], C15H10O6, and its monohydrate, C15H10O6·H2O, were determined by single-crystal X-ray diffraction analysis. The flavonoid was isolated from the ethyl acetate fraction of Datisca cannabina L. collected in Tashkent region, Uzbekistan. In both structures, the chromenone ring system and the phenyl ring form nearly the same dihedral angles (38.3 and 38.7° for the anhydrate and monohydrate, respectively). In addition, in both structures, the molecules stack through π–π interactions along the shortest translation axis of the [3.7601 (1) and 3.9274 (5) Å, respectively], resulting in the formation of needle-shaped single crystals.
Keywords: Datisca cannabina L.; datiscetin; flavonoids; crystal structure; X-ray diffraction.
1. Chemical context
Datisca cannabina L. (commonly known as false hemp) is a shrub of the family Datiscaceae that resembles hemp (Cannabis sativa L.) in many aspects, including its general morphology and the arrangement of its leaves. It is a robust single genus of perennial plant that reaches up to 1–2 m in height and is predominantly found in riparian environments (Holmes & Blizzard, 2010
; Bohmer et al., 2002
). The family Datiscaceae includes three genera and four species, the genus Datisca consists of two species: D. glomerata (Presl) Baill., found in California, and D. cannabina L., which grows in the area from southwest Asia to Crete (Christopher, 1973
). The aerial parts of the plant are rich in biologically active compounds, including flavonoids (17%), tannins (2.9%), coumarins (0.9–1.5%) and alkaloids (0.31%). Datisca cannabina L. is used as a medicinal raw material in the production of Datiscan, a preparation containing a complex of This formulation is recommended as part of combination therapy for digestive disorders, including gastric ailments, scrofulous conditions and gastrointestinal diseases accompanied by smooth muscle spasms. In traditional medicine, infusions and decoctions prepared from the aerial parts of the plant are employed as diuretics, expectorants and laxatives. Moreover, the plant has been reported to exhibit a range of biological activities, such as antioxidant, anti-inflammatory, antibacterial and anticarcinogenic properties (Ahmad et al., 2008
). Additionally, the roots are used for obtaining a yellow dye for colouring wool and silk, while the stems provide bast fiber suitable for netting (Muhammed et al., 2012
). In this work, we report the crystal structures of datiscetin (I) and its monohydrate (II) isolated from Datisca cannabina L.
2. Structural commentary
Solvent (hydrate)-free crystals (I) of datiscetin were obtained from a chloroform–methanol (7:3 v/v) mixture. The molecular structure of datiscetin is shown in Fig. 1
. The chromenone ring system and the phenyl ring are planar, with r.m.s. deviations of 0.008 and 0.005 Å, respectively, and the dihedral angle between them is 38.3°. The torsion angle between these two rings is stabilized by an intramolecular O6—H6⋯O2 hydrogen bond formed between the hydroxyl group of the phenyl ring and the hydroxyl group located at position 3 [2.625 (2) Å and 155 (3)°]. The hydroxyl group at position 5 in the molecule also forms an intramolecular O4—H4⋯O3 hydrogen bond with the carbonyl group [2.631 (2) Å and 155 (3)°] Table 1
.
|
| Figure 1 The molecular structure of I. Displacement ellipsoids are drawn at the 50% probability level. |
Datiscetin monohydrate crystals (II) were obtained from methanol at room temperature and crystallize in the orthorhombic space group Pna21. The asymmetric unit consists of one flavonoid molecule and one water molecule (Fig. 2
). The chromenone ring system and the phenyl ring are planar, with r.m.s. deviations of 0.015 and 0.004 Å, respectively, and the dihedral angle between them is 38.7°, which is the same as that observed in crystal form I, and is stabilized by an intramolecular O2—H2⋯O6 hydrogen bond formed between the hydroxyl group of the phenyl ring and the hydroxyl group located at position 3 [2.609 (3) Å and 153°; Table 2
].
|
| Figure 2 The molecular structure of II. Displacement ellipsoids are drawn at the 50% probability level |
3. Supramolecular features
The crystal of I possesses an inversion centre, therefore, the crystals contain ‘left' and ‘right' molecules with respect to the orientation of the chromenone and phenyl rings. In crystal form I, the ‘left' and ‘right' molecules related by the inversion centre form hydrogen-bonded dimers through the hydroxyl at position 3 and carbonyl groups [0.85 (3), 1.86 (3), 2.6094 (19) Å and 147 (3)°]. The dimers are connected by hydrogen bonds via the hydroxyl groups at position 7 and on the phenyl ring, leading to the formation of a two-dimensional supramolecular network in the crystal (Table 1
, Fig. 3
). The supramolecules formed from ‘supercells' [Fig. 4
(a)] are further packed along the b axis through π–π stacking interactions, with centroid-to-centroid distances equal to the unit-cell translation along the b axis [3.7601 (1) Å], with a slippage of 1.59 Å [Fig. 4
(b)]. This particular stacking corresponds to the preferential growth direction during crystallization, leading to the formation of needle-shaped single crystals (Fig. 5
).
| | Figure 3 Packing of molecules of I, viewed along the b axis, showing the formation of a hydrogen-bonded macrocycle consisting of six molecules. |
| Figure 4 (a) Formation of a hydrogen-bonded network, where the hydrogen-bonded rings consist of six molecules of datiscetin. (b) Translation (stacking) of the network along the b axis. In both cases, the packing is shown along the [40 |
| Figure 5 Single crystal of I exhibiting a needle-like morphology. |
Packing analysis of the of II shows that flavonoid molecules related by glide-plane symmetry are connected through an O5—H5⋯O3i hydrogen bond [O5⋯O3i = 2.803 (3) Å and 166°; symmetry code: (i) x − , −y +
, z + 1]. Water molecules bridge flavonoid molecules stacked along the c axis [O1W⋯ O5ii = 3.281 (5) Å and O1W⋯ O5iii = 2.934 (4) Å; symmetry codes: (ii) −x +
, y −
, z −
; (iii) −x +
, y −
, z −
] (Table 2
, Fig. 6
). It should be noted that, due to the difficulty of experimentally determining the coordinates of hydrogen atoms in water molecules, the observed other short Ow⋯O distances may indicate the possible presence of alternative hydrogen bonds, not taken into account in the table
| Figure 6 Packing of molecules and hydrogen bonding in II. |
The stacking of molecules along the c axis corresponds to the preferential growth direction during crystallization, resulting in the formation of conical-needle-shaped single crystals along this axis (Fig. 7
).
| Figure 7 Single crystal of II exhibiting a conical-needle-shaped morphology. |
4. Database survey
A search of the Cambridge Structural Database (CSD, Version 5.41, including the update of January 2020; Groom et al., 2016
) for flavonoids with a 2-phenyl substituent yields more than 1400 hits.
5. Isolation and crystallization
5.1. Plant material
The above-ground parts (leaves, flowers and stems) of Datisca cannabina L. were collected in the Tashkent region, Uzbekistan, in October 2024, during the seed-bearing period. The species identification was confirmed by comparing the collected specimen with herbarium material of Datisca cannabina L. preserved at the Central Herbarium of Uzbekistan. The taxonomic identification was carried out by A. M. Nigmatullaev, Senior Researcher at the Laboratory of Biology of Medicinal and Technical Plants, S. Yu. Yunusov Institute of the Chemistry of Plant Substances, Academy of Sciences of the Republic of Uzbekistan.
5.2. Extraction and isolation
The freshly collected air-dried powdered plant material (3.0 kg) was extracted ten times by percolation with 75% ethanol. The combined concentrated viscous extract was consecutively partitioned with solvents of increasing polarity between chloroform, ethyl acetate and n-butanol. The ethyl acetate fraction was adsorbed onto silica gel (1:1 v/v, 99 g) and subjected to column chromatography (165 × 4.5 cm) with stepwise elution using chloroform and chloroform–methanol mixtures (9:1, 8:2 and 7:3 v/v). The obtained mixture of flavonoids was further separated into individual compounds by molecular weight using a Sephadex LH-20 column with methanol as the eluent, yielding 14.3 g of datiscetin.
5.3. NMR spectroscopy
NMR spectra were recorded on a JNM-ECZ600R spectrometer (JEOL, Japan) operating at 600 MHz for 1H and 150 MHz for 13C, using DMSO-d6 (Cambridge Isotope Laboratories, Inc., USA) as solvent. Tetramethylsilane (TMS, 0 ppm) served as the internal standard for 1H NMR and 13C NMR, the residual solvent signal of DMSO-d6 (39.52 ppm relative to TMS) was used. Spectral data were processed with MestReNova software (Version 14.2.0; Mestrelab Research S.L., Santiago de Compostela, Spain).
1H NMR (600 MHz, CD3OD, ppm δ, J/Hz): 7.55 (1H, dd, J = 7.8, 1.7, H-6′), 7.37 (1H, ddd, J = 8.3, 7.3, 1.7, H-4′), 7.00 (1H, ddd, J = 7.8, 7.3, 1.0, H-5′), 6.98 (1H, dd, J = 8.3, 1.0, H-3′), 6.34 (1H, d, J = 2.1, H-8), 6.19 (1H, d, J = 2.1, H-6).
13C NMR (150 MHz, CD3OD, ppm. δ): 149.09 (C-2), 137.76 (C-3), 177.98 (C-4), 162.88 (C-5), 99.34 (C-6), 165.74 (C-7), 94.62 (C-8), 159.16 (C-9), 105.22 (C-10), 119.89 (C-1′), 156.37 (C-2′), 118.13 (C-3′), 132.93 (C-4′), 120.90 (C-5′), 131.35 (C-6′).
6. Refinement
Crystal data, data collection and structure details are summarized in Table 3
. For I and II, the H atoms bonded to C atoms were placed in calculated positions and refined to ride on their parent atoms: C—H = 0.93 Å with Uiso(H) = 1.2Ueq(C) for aromatic H atoms. Hydroxyl H atoms in I were located using electron-density difference maps, and were refined freely. For II, H atoms of the hydroxyl groups and water molecule were placed in calculated positions.
|
Supporting information
contains datablocks global, h200, h149. DOI: https://doi.org/10.1107/S2056989026004056/nx2034sup1.cif
Structure factors: contains datablock h200. DOI: https://doi.org/10.1107/S2056989026004056/nx2034h200sup2.hkl
Structure factors: contains datablock h149. DOI: https://doi.org/10.1107/S2056989026004056/nx2034h149sup3.hkl
Supporting information file. DOI: https://doi.org/10.1107/S2056989026004056/nx2034h200sup4.cml
Supporting information file. DOI: https://doi.org/10.1107/S2056989026004056/nx2034h149sup5.cml
| C15H10O6 | F(000) = 592 |
| Mr = 286.23 | Dx = 1.578 Mg m−3 |
| Monoclinic, P21/c | Cu Kα radiation, λ = 1.54178 Å |
| a = 15.0296 (5) Å | Cell parameters from 8258 reflections |
| b = 3.7601 (1) Å | θ = 4.2–68.2° |
| c = 21.6148 (7) Å | µ = 1.06 mm−1 |
| β = 99.453 (2)° | T = 293 K |
| V = 1204.93 (6) Å3 | Needle, colourless |
| Z = 4 | 0.50 × 0.08 × 0.05 mm |
| Bruker D8 VENTURE dual wavelength Mo/Cu diffractometer | 2220 independent reflections |
| Radiation source: microfocus X-ray source, Incoatec IµS 3.0 Microfocus Source | 2026 reflections with I > 2σ(I) |
| Mirror monochromator | Rint = 0.052 |
| Detector resolution: 7.3910 pixels mm-1 | θmax = 68.3°, θmin = 3.0° |
| ω–φ scans | h = −18→17 |
| Absorption correction: multi-scan (SADABS2016; Krause et al., 2015) | k = −4→4 |
| Tmin = 0.592, Tmax = 0.753 | l = −26→26 |
| 26195 measured reflections |
| Refinement on F2 | Hydrogen site location: inferred from neighbouring sites |
| Least-squares matrix: full | H atoms treated by a mixture of independent and constrained refinement |
| R[F2 > 2σ(F2)] = 0.046 | w = 1/[σ2(Fo2) + (0.079P)2 + 0.4321P] where P = (Fo2 + 2Fc2)/3 |
| wR(F2) = 0.141 | (Δ/σ)max < 0.001 |
| S = 1.17 | Δρmax = 0.39 e Å−3 |
| 2220 reflections | Δρmin = −0.37 e Å−3 |
| 199 parameters | Extinction correction: SHELXL2014 (Sheldrick, 2015b), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
| 0 restraints | Extinction coefficient: 0.0098 (12) |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| x | y | z | Uiso*/Ueq | ||
| O1 | 0.20372 (8) | 0.6063 (3) | 0.53557 (5) | 0.0305 (3) | |
| O2 | 0.36717 (9) | 0.9638 (4) | 0.44792 (6) | 0.0398 (4) | |
| H2 | 0.424 (2) | 0.986 (7) | 0.4589 (6) | 0.060* | |
| O3 | 0.47468 (8) | 0.7623 (4) | 0.55722 (6) | 0.0463 (4) | |
| O4 | 0.49049 (9) | 0.4646 (5) | 0.66865 (7) | 0.0526 (5) | |
| H4 | 0.5088 (7) | 0.561 (9) | 0.6349 (13) | 0.079* | |
| O5 | 0.21619 (10) | 0.1003 (4) | 0.73305 (7) | 0.0474 (4) | |
| H5 | 0.2541 (14) | 0.037 (8) | 0.7676 (14) | 0.071* | |
| O6 | 0.25875 (9) | 0.6804 (4) | 0.35317 (6) | 0.0451 (4) | |
| H6 | 0.3070 (16) | 0.742 (7) | 0.3810 (12) | 0.068* | |
| C2 | 0.24158 (11) | 0.7541 (5) | 0.48810 (7) | 0.0271 (4) | |
| C3 | 0.33153 (11) | 0.8063 (5) | 0.49504 (8) | 0.0298 (4) | |
| C4 | 0.39130 (11) | 0.7049 (5) | 0.55145 (8) | 0.0310 (4) | |
| C4A | 0.35007 (12) | 0.5439 (5) | 0.59939 (8) | 0.0299 (4) | |
| C5 | 0.40008 (12) | 0.4289 (5) | 0.65774 (8) | 0.0349 (4) | |
| C6 | 0.35701 (13) | 0.2818 (5) | 0.70293 (8) | 0.0376 (5) | |
| H6A | 0.3899 | 0.2079 | 0.7410 | 0.045* | |
| C7 | 0.26335 (13) | 0.2443 (5) | 0.69115 (8) | 0.0351 (4) | |
| C8 | 0.21210 (12) | 0.3543 (5) | 0.63513 (8) | 0.0329 (4) | |
| H8 | 0.1497 | 0.3289 | 0.6280 | 0.039* | |
| C8A | 0.25639 (12) | 0.5021 (5) | 0.59043 (8) | 0.0284 (4) | |
| C9 | 0.17216 (11) | 0.8532 (4) | 0.43451 (8) | 0.0276 (4) | |
| C10 | 0.18276 (12) | 0.8150 (5) | 0.37161 (8) | 0.0317 (4) | |
| C11 | 0.11160 (13) | 0.9013 (6) | 0.32428 (8) | 0.0393 (5) | |
| H11 | 0.1185 | 0.8731 | 0.2826 | 0.047* | |
| C12 | 0.03171 (14) | 1.0270 (6) | 0.33804 (10) | 0.0430 (5) | |
| H12 | −0.0152 | 1.0817 | 0.3058 | 0.052* | |
| C13 | 0.02049 (13) | 1.0730 (5) | 0.40003 (10) | 0.0396 (5) | |
| H13 | −0.0334 | 1.1620 | 0.4095 | 0.047* | |
| C14 | 0.09014 (12) | 0.9853 (5) | 0.44718 (9) | 0.0334 (4) | |
| H14 | 0.0824 | 1.0148 | 0.4887 | 0.040* |
| U11 | U22 | U33 | U12 | U13 | U23 | |
| O1 | 0.0263 (6) | 0.0411 (7) | 0.0231 (6) | −0.0033 (5) | 0.0007 (5) | 0.0043 (5) |
| O2 | 0.0265 (7) | 0.0625 (9) | 0.0292 (7) | −0.0102 (6) | 0.0007 (5) | 0.0095 (6) |
| O3 | 0.0252 (7) | 0.0706 (10) | 0.0408 (8) | −0.0103 (6) | −0.0010 (5) | 0.0121 (7) |
| O4 | 0.0321 (8) | 0.0806 (12) | 0.0405 (8) | −0.0066 (7) | −0.0078 (6) | 0.0149 (8) |
| O5 | 0.0500 (8) | 0.0630 (10) | 0.0304 (7) | −0.0006 (7) | 0.0099 (6) | 0.0147 (7) |
| O6 | 0.0338 (7) | 0.0715 (10) | 0.0293 (7) | 0.0027 (7) | 0.0029 (5) | −0.0133 (7) |
| C2 | 0.0277 (8) | 0.0308 (8) | 0.0227 (8) | −0.0026 (7) | 0.0034 (6) | −0.0005 (6) |
| C3 | 0.0287 (9) | 0.0361 (9) | 0.0241 (8) | −0.0040 (7) | 0.0028 (7) | 0.0001 (7) |
| C4 | 0.0262 (8) | 0.0358 (9) | 0.0296 (9) | −0.0039 (7) | 0.0007 (7) | −0.0010 (7) |
| C4A | 0.0293 (9) | 0.0330 (9) | 0.0259 (8) | −0.0020 (7) | 0.0002 (7) | −0.0011 (7) |
| C5 | 0.0327 (9) | 0.0394 (10) | 0.0296 (9) | −0.0018 (7) | −0.0037 (7) | −0.0003 (8) |
| C6 | 0.0425 (11) | 0.0416 (10) | 0.0258 (9) | 0.0011 (8) | −0.0031 (7) | 0.0045 (8) |
| C7 | 0.0445 (11) | 0.0343 (9) | 0.0269 (9) | −0.0004 (8) | 0.0073 (7) | 0.0010 (7) |
| C8 | 0.0322 (9) | 0.0375 (10) | 0.0288 (9) | −0.0028 (7) | 0.0045 (7) | 0.0020 (7) |
| C8A | 0.0297 (9) | 0.0309 (9) | 0.0228 (8) | 0.0000 (7) | −0.0010 (6) | −0.0011 (7) |
| C9 | 0.0258 (8) | 0.0298 (8) | 0.0258 (8) | −0.0045 (6) | 0.0003 (6) | 0.0012 (7) |
| C10 | 0.0296 (9) | 0.0364 (10) | 0.0282 (9) | −0.0036 (7) | 0.0022 (7) | −0.0022 (7) |
| C11 | 0.0409 (10) | 0.0493 (11) | 0.0250 (9) | −0.0048 (9) | −0.0026 (7) | 0.0019 (8) |
| C12 | 0.0354 (10) | 0.0483 (12) | 0.0402 (11) | −0.0013 (8) | −0.0092 (8) | 0.0105 (9) |
| C13 | 0.0280 (9) | 0.0418 (11) | 0.0475 (11) | 0.0032 (8) | 0.0020 (8) | 0.0040 (9) |
| C14 | 0.0298 (9) | 0.0388 (10) | 0.0313 (9) | −0.0019 (7) | 0.0042 (7) | 0.0004 (7) |
| O1—C2 | 1.370 (2) | C5—C6 | 1.374 (3) |
| O1—C8A | 1.370 (2) | C6—C7 | 1.396 (3) |
| O2—C3 | 1.361 (2) | C6—H6A | 0.9300 |
| O2—H2 | 0.85 (3) | C7—C8 | 1.387 (3) |
| O3—C4 | 1.257 (2) | C8—C8A | 1.377 (2) |
| O4—C5 | 1.347 (2) | C8—H8 | 0.9300 |
| O4—H4 | 0.90 (3) | C9—C14 | 1.397 (3) |
| O5—C7 | 1.352 (2) | C9—C10 | 1.402 (2) |
| O5—H5 | 0.89 (3) | C10—C11 | 1.392 (3) |
| O6—C10 | 1.367 (2) | C11—C12 | 1.368 (3) |
| O6—H6 | 0.89 (3) | C11—H11 | 0.9300 |
| C2—C3 | 1.350 (2) | C12—C13 | 1.389 (3) |
| C2—C9 | 1.474 (2) | C12—H12 | 0.9300 |
| C3—C4 | 1.442 (2) | C13—C14 | 1.376 (3) |
| C4—C4A | 1.427 (2) | C13—H13 | 0.9300 |
| C4A—C8A | 1.398 (2) | C14—H14 | 0.9300 |
| C4A—C5 | 1.425 (2) | ||
| C2—O1—C8A | 120.81 (13) | C8—C7—C6 | 121.86 (17) |
| C3—O2—H2 | 109.5 | C8A—C8—C7 | 118.02 (17) |
| C5—O4—H4 | 109.5 | C8A—C8—H8 | 121.0 |
| C7—O5—H5 | 109.5 | C7—C8—H8 | 121.0 |
| C10—O6—H6 | 109.5 | O1—C8A—C8 | 116.45 (15) |
| C3—C2—O1 | 120.48 (15) | O1—C8A—C4A | 120.87 (15) |
| C3—C2—C9 | 128.12 (15) | C8—C8A—C4A | 122.67 (16) |
| O1—C2—C9 | 111.33 (14) | C14—C9—C10 | 118.09 (16) |
| C2—C3—O2 | 119.34 (15) | C14—C9—C2 | 117.99 (15) |
| C2—C3—C4 | 121.93 (16) | C10—C9—C2 | 123.90 (16) |
| O2—C3—C4 | 118.72 (15) | O6—C10—C11 | 116.75 (16) |
| O3—C4—C4A | 123.05 (16) | O6—C10—C9 | 123.65 (16) |
| O3—C4—C3 | 120.72 (16) | C11—C10—C9 | 119.54 (17) |
| C4A—C4—C3 | 116.22 (15) | C12—C11—C10 | 121.12 (18) |
| C8A—C4A—C5 | 117.47 (16) | C12—C11—H11 | 119.4 |
| C8A—C4A—C4 | 119.65 (16) | C10—C11—H11 | 119.4 |
| C5—C4A—C4 | 122.87 (16) | C11—C12—C13 | 120.20 (17) |
| O4—C5—C6 | 119.70 (17) | C11—C12—H12 | 119.9 |
| O4—C5—C4A | 119.65 (17) | C13—C12—H12 | 119.9 |
| C6—C5—C4A | 120.65 (17) | C14—C13—C12 | 119.12 (18) |
| C5—C6—C7 | 119.34 (16) | C14—C13—H13 | 120.4 |
| C5—C6—H6A | 120.3 | C12—C13—H13 | 120.4 |
| C7—C6—H6A | 120.3 | C13—C14—C9 | 121.90 (17) |
| O5—C7—C8 | 115.30 (17) | C13—C14—H14 | 119.0 |
| O5—C7—C6 | 122.84 (17) | C9—C14—H14 | 119.0 |
| C8A—O1—C2—C3 | −1.3 (3) | C2—O1—C8A—C8 | −179.56 (15) |
| C8A—O1—C2—C9 | −178.60 (14) | C2—O1—C8A—C4A | 0.0 (2) |
| O1—C2—C3—O2 | −177.97 (15) | C7—C8—C8A—O1 | 179.72 (16) |
| C9—C2—C3—O2 | −1.2 (3) | C7—C8—C8A—C4A | 0.2 (3) |
| O1—C2—C3—C4 | 1.1 (3) | C5—C4A—C8A—O1 | −179.98 (15) |
| C9—C2—C3—C4 | 177.86 (17) | C4—C4A—C8A—O1 | 1.5 (3) |
| C2—C3—C4—O3 | −178.72 (18) | C5—C4A—C8A—C8 | −0.5 (3) |
| O2—C3—C4—O3 | 0.4 (3) | C4—C4A—C8A—C8 | −178.93 (17) |
| C2—C3—C4—C4A | 0.4 (3) | C3—C2—C9—C14 | −140.56 (19) |
| O2—C3—C4—C4A | 179.49 (16) | O1—C2—C9—C14 | 36.4 (2) |
| O3—C4—C4A—C8A | 177.41 (18) | C3—C2—C9—C10 | 41.0 (3) |
| C3—C4—C4A—C8A | −1.7 (3) | O1—C2—C9—C10 | −141.99 (17) |
| O3—C4—C4A—C5 | −1.0 (3) | C14—C9—C10—O6 | −178.23 (17) |
| C3—C4—C4A—C5 | 179.91 (16) | C2—C9—C10—O6 | 0.2 (3) |
| C8A—C4A—C5—O4 | −179.79 (17) | C14—C9—C10—C11 | −1.4 (3) |
| C4—C4A—C5—O4 | −1.4 (3) | C2—C9—C10—C11 | 177.08 (17) |
| C8A—C4A—C5—C6 | 0.2 (3) | O6—C10—C11—C12 | 177.87 (18) |
| C4—C4A—C5—C6 | 178.67 (18) | C9—C10—C11—C12 | 0.8 (3) |
| O4—C5—C6—C7 | −179.73 (18) | C10—C11—C12—C13 | 0.4 (3) |
| C4A—C5—C6—C7 | 0.2 (3) | C11—C12—C13—C14 | −1.0 (3) |
| C5—C6—C7—O5 | 179.59 (18) | C12—C13—C14—C9 | 0.4 (3) |
| C5—C6—C7—C8 | −0.5 (3) | C10—C9—C14—C13 | 0.8 (3) |
| O5—C7—C8—C8A | −179.78 (16) | C2—C9—C14—C13 | −177.76 (17) |
| C6—C7—C8—C8A | 0.3 (3) |
| D—H···A | D—H | H···A | D···A | D—H···A |
| O2—H2···O3i | 0.85 (3) | 1.85 (3) | 2.6094 (18) | 147 (3) |
| O4—H4···O3 | 0.91 (3) | 1.78 (3) | 2.631 (2) | 155 (3) |
| O5—H5···O6ii | 0.91 (4) | 1.98 (4) | 2.7778 (19) | 146 (3) |
| O6—H6···O2 | 0.89 (3) | 1.79 (3) | 2.6253 (19) | 155 (3) |
| Symmetry codes: (i) −x+1, −y+2, −z+1; (ii) x, −y+1/2, z+1/2. |
| C15H10O6·H2O | Dx = 1.543 Mg m−3 |
| Mr = 304.25 | Cu Kα radiation, λ = 1.54178 Å |
| Orthorhombic, Pna21 | Cell parameters from 4404 reflections |
| a = 14.0628 (15) Å | θ = 7.3–68.1° |
| b = 23.714 (3) Å | µ = 1.06 mm−1 |
| c = 3.9274 (5) Å | T = 291 K |
| V = 1309.7 (3) Å3 | Needle, colourless |
| Z = 4 | 0.65 × 0.14 × 0.07 mm |
| F(000) = 632 |
| Bruker D8 VENTURE dual wavelength Mo/Cu diffractometer | 2305 independent reflections |
| Radiation source: microfocus X-ray source, Incoatec IµS 3.0 Microfocus Source | 2142 reflections with I > 2σ(I) |
| Mirror monochromator | Rint = 0.038 |
| Detector resolution: 7.3910 pixels mm-1 | θmax = 68.3°, θmin = 7.3° |
| ω–φ scans | h = −16→16 |
| Absorption correction: multi-scan (SADABS2016; Krause et al., 2015) | k = −25→28 |
| Tmin = 0.66, Tmax = 0.93 | l = −4→4 |
| 8711 measured reflections |
| Refinement on F2 | Hydrogen site location: mixed |
| Least-squares matrix: full | H atoms treated by a mixture of independent and constrained refinement |
| R[F2 > 2σ(F2)] = 0.043 | w = 1/[σ2(Fo2) + (0.0954P)2 + 0.0942P] where P = (Fo2 + 2Fc2)/3 |
| wR(F2) = 0.116 | (Δ/σ)max = 0.002 |
| S = 0.93 | Δρmax = 0.25 e Å−3 |
| 2305 reflections | Δρmin = −0.20 e Å−3 |
| 207 parameters | Absolute structure: Flack x determined using 811 quotients [(I+)-(I-)]/[(I+)+(I-)] (Parsons et al., 2013) |
| 1 restraint | Absolute structure parameter: 0.25 (10) |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| x | y | z | Uiso*/Ueq | ||
| O1 | 0.21017 (12) | 0.67355 (8) | 0.4950 (5) | 0.0496 (5) | |
| O2 | 0.42512 (15) | 0.62983 (10) | 0.0550 (7) | 0.0659 (6) | |
| H2 | 0.4119 | 0.5962 | 0.0606 | 0.099* | |
| O3 | 0.47772 (13) | 0.73003 (8) | 0.2957 (6) | 0.0594 (5) | |
| O4 | 0.43416 (14) | 0.82483 (10) | 0.6100 (7) | 0.0670 (6) | |
| H4 | 0.472 (3) | 0.7990 (17) | 0.501 (15) | 0.101* | |
| O5 | 0.12647 (14) | 0.83978 (9) | 1.0763 (7) | 0.0663 (6) | |
| H5 | 0.0782 | 0.8212 | 1.1113 | 0.099* | |
| O6 | 0.36173 (17) | 0.53262 (11) | 0.2674 (9) | 0.0776 (7) | |
| H6 | 0.3647 | 0.5392 | 0.4721 | 0.116* | |
| C2 | 0.27162 (18) | 0.64084 (11) | 0.3106 (7) | 0.0474 (6) | |
| C3 | 0.36183 (17) | 0.65904 (12) | 0.2473 (7) | 0.0492 (6) | |
| C4 | 0.39466 (18) | 0.71322 (12) | 0.3617 (7) | 0.0488 (6) | |
| C4A | 0.32752 (17) | 0.74680 (12) | 0.5469 (7) | 0.0465 (6) | |
| C5 | 0.34735 (17) | 0.80153 (11) | 0.6692 (7) | 0.0501 (6) | |
| C6 | 0.2810 (2) | 0.83166 (11) | 0.8462 (8) | 0.0542 (7) | |
| H6A | 0.2953 | 0.8675 | 0.9271 | 0.065* | |
| C7 | 0.19053 (19) | 0.80783 (12) | 0.9051 (7) | 0.0511 (6) | |
| C8 | 0.16834 (17) | 0.75469 (12) | 0.7910 (7) | 0.0501 (6) | |
| H8 | 0.1090 | 0.7390 | 0.8345 | 0.060* | |
| C8A | 0.23623 (16) | 0.72515 (10) | 0.6101 (7) | 0.0454 (6) | |
| C9 | 0.22479 (19) | 0.58975 (12) | 0.1862 (7) | 0.0527 (7) | |
| C10 | 0.2694 (2) | 0.53740 (13) | 0.1606 (8) | 0.0611 (8) | |
| C11 | 0.2213 (3) | 0.49107 (15) | 0.0292 (10) | 0.0738 (10) | |
| H11 | 0.2522 | 0.4565 | 0.0125 | 0.089* | |
| C12 | 0.1298 (3) | 0.49590 (18) | −0.0747 (11) | 0.0772 (10) | |
| H12 | 0.0983 | 0.4646 | −0.1618 | 0.093* | |
| C13 | 0.0833 (2) | 0.54674 (18) | −0.0524 (9) | 0.0729 (9) | |
| H13 | 0.0207 | 0.5498 | −0.1264 | 0.087* | |
| C14 | 0.1295 (2) | 0.59331 (14) | 0.0801 (8) | 0.0586 (7) | |
| H14 | 0.0972 | 0.6274 | 0.0993 | 0.070* | |
| O1W | 0.4385 (3) | 0.43331 (13) | 0.1462 (13) | 0.1119 (12) | |
| H1WA | 0.4279 | 0.4453 | 0.3467 | 0.168* | |
| H1WB | 0.4247 | 0.3984 | 0.1542 | 0.168* |
| U11 | U22 | U33 | U12 | U13 | U23 | |
| O1 | 0.0353 (9) | 0.0610 (10) | 0.0525 (11) | −0.0084 (7) | 0.0025 (8) | 0.0096 (9) |
| O2 | 0.0449 (11) | 0.0735 (12) | 0.0795 (15) | −0.0039 (9) | 0.0108 (10) | −0.0067 (12) |
| O3 | 0.0327 (9) | 0.0747 (11) | 0.0708 (13) | −0.0106 (8) | 0.0067 (8) | 0.0018 (10) |
| O4 | 0.0434 (10) | 0.0699 (12) | 0.0878 (17) | −0.0176 (8) | 0.0086 (11) | 0.0024 (12) |
| O5 | 0.0467 (11) | 0.0675 (11) | 0.0846 (16) | 0.0038 (9) | 0.0102 (11) | 0.0011 (12) |
| O6 | 0.0639 (13) | 0.0716 (13) | 0.0973 (19) | −0.0017 (10) | −0.0159 (14) | 0.0092 (15) |
| C2 | 0.0370 (12) | 0.0619 (14) | 0.0435 (13) | −0.0044 (10) | −0.0025 (10) | 0.0124 (12) |
| C3 | 0.0367 (12) | 0.0630 (14) | 0.0480 (14) | −0.0027 (10) | −0.0001 (11) | 0.0094 (13) |
| C4 | 0.0323 (12) | 0.0667 (15) | 0.0475 (14) | −0.0048 (11) | −0.0005 (10) | 0.0129 (13) |
| C4A | 0.0334 (12) | 0.0607 (14) | 0.0455 (13) | −0.0044 (10) | −0.0014 (10) | 0.0134 (12) |
| C5 | 0.0341 (11) | 0.0607 (14) | 0.0555 (15) | −0.0064 (10) | −0.0040 (11) | 0.0125 (13) |
| C6 | 0.0470 (15) | 0.0543 (14) | 0.0612 (18) | −0.0028 (11) | −0.0028 (13) | 0.0071 (13) |
| C7 | 0.0369 (13) | 0.0630 (15) | 0.0532 (14) | 0.0042 (11) | −0.0008 (11) | 0.0108 (13) |
| C8 | 0.0326 (12) | 0.0636 (15) | 0.0540 (15) | −0.0034 (10) | −0.0006 (11) | 0.0133 (13) |
| C8A | 0.0340 (12) | 0.0580 (13) | 0.0442 (13) | −0.0046 (9) | −0.0035 (11) | 0.0141 (12) |
| C9 | 0.0458 (14) | 0.0670 (16) | 0.0454 (14) | −0.0118 (11) | 0.0028 (11) | 0.0090 (12) |
| C10 | 0.0553 (17) | 0.0714 (17) | 0.0565 (17) | −0.0116 (13) | −0.0028 (14) | 0.0107 (15) |
| C11 | 0.081 (2) | 0.0707 (18) | 0.070 (2) | −0.0196 (16) | 0.0053 (18) | −0.0015 (17) |
| C12 | 0.074 (2) | 0.091 (2) | 0.0660 (19) | −0.032 (2) | 0.0016 (18) | −0.0084 (18) |
| C13 | 0.0527 (17) | 0.107 (3) | 0.0587 (18) | −0.0280 (19) | −0.0013 (14) | 0.0002 (18) |
| C14 | 0.0426 (14) | 0.0837 (19) | 0.0497 (15) | −0.0141 (13) | 0.0021 (12) | 0.0066 (15) |
| O1W | 0.119 (3) | 0.0767 (16) | 0.140 (3) | 0.0237 (16) | 0.004 (2) | 0.015 (2) |
| O1—C8A | 1.355 (3) | C6—C7 | 1.411 (4) |
| O1—C2 | 1.369 (3) | C6—H6A | 0.9300 |
| O2—C3 | 1.357 (4) | C7—C8 | 1.373 (4) |
| O2—H2 | 0.8200 | C8—C8A | 1.381 (4) |
| O3—C4 | 1.261 (3) | C8—H8 | 0.9300 |
| O4—C5 | 1.360 (3) | C9—C10 | 1.395 (4) |
| O4—H4 | 0.92 (6) | C9—C14 | 1.405 (4) |
| O5—C7 | 1.356 (4) | C10—C11 | 1.390 (5) |
| O5—H5 | 0.8200 | C11—C12 | 1.355 (6) |
| O6—C10 | 1.369 (4) | C11—H11 | 0.9300 |
| O6—H6 | 0.8200 | C12—C13 | 1.375 (6) |
| C2—C3 | 1.363 (3) | C12—H12 | 0.9300 |
| C2—C9 | 1.463 (4) | C13—C14 | 1.383 (5) |
| C3—C4 | 1.437 (4) | C13—H13 | 0.9300 |
| C4—C4A | 1.433 (4) | C14—H14 | 0.9300 |
| C4A—C8A | 1.405 (3) | O1W—H1WA | 0.8500 |
| C4A—C5 | 1.412 (4) | O1W—H1WB | 0.8499 |
| C5—C6 | 1.365 (4) | ||
| C8A—O1—C2 | 121.18 (19) | C7—C8—C8A | 118.4 (2) |
| C3—O2—H2 | 109.5 | C7—C8—H8 | 120.8 |
| C5—O4—H4 | 109.5 | C8A—C8—H8 | 120.8 |
| C7—O5—H5 | 109.5 | O1—C8A—C8 | 116.3 (2) |
| C10—O6—H6 | 109.5 | O1—C8A—C4A | 121.2 (2) |
| O1—C2—C3 | 120.3 (2) | C8—C8A—C4A | 122.5 (3) |
| O1—C2—C9 | 111.2 (2) | C10—C9—C14 | 117.5 (3) |
| C3—C2—C9 | 128.4 (3) | C10—C9—C2 | 124.0 (2) |
| O2—C3—C2 | 123.4 (3) | C14—C9—C2 | 118.6 (3) |
| O2—C3—C4 | 114.8 (2) | O6—C10—C11 | 120.7 (3) |
| C2—C3—C4 | 121.7 (3) | O6—C10—C9 | 118.6 (3) |
| O3—C4—C4A | 122.6 (3) | C11—C10—C9 | 120.7 (3) |
| O3—C4—C3 | 121.0 (3) | C12—C11—C10 | 120.5 (4) |
| C4A—C4—C3 | 116.3 (2) | C12—C11—H11 | 119.8 |
| C8A—C4A—C5 | 117.2 (2) | C10—C11—H11 | 119.8 |
| C8A—C4A—C4 | 119.2 (3) | C13—C12—C11 | 120.5 (3) |
| C5—C4A—C4 | 123.6 (2) | C13—C12—H12 | 119.8 |
| O4—C5—C6 | 119.2 (3) | C11—C12—H12 | 119.8 |
| O4—C5—C4A | 119.5 (3) | C12—C13—C14 | 120.0 (3) |
| C6—C5—C4A | 121.3 (2) | C12—C13—H13 | 120.0 |
| C5—C6—C7 | 119.3 (3) | C14—C13—H13 | 120.0 |
| C5—C6—H6A | 120.3 | C13—C14—C9 | 120.8 (3) |
| C7—C6—H6A | 120.3 | C13—C14—H14 | 119.6 |
| O5—C7—C8 | 121.6 (2) | C9—C14—H14 | 119.6 |
| O5—C7—C6 | 117.2 (3) | H1WA—O1W—H1WB | 104.5 |
| C8—C7—C6 | 121.2 (3) | ||
| C8A—O1—C2—C3 | 1.9 (3) | C2—O1—C8A—C8 | 179.5 (2) |
| C8A—O1—C2—C9 | −174.3 (2) | C2—O1—C8A—C4A | −0.5 (3) |
| O1—C2—C3—O2 | −177.3 (2) | C7—C8—C8A—O1 | −178.3 (2) |
| C9—C2—C3—O2 | −1.7 (5) | C7—C8—C8A—C4A | 1.7 (4) |
| O1—C2—C3—C4 | −1.8 (4) | C5—C4A—C8A—O1 | 178.4 (2) |
| C9—C2—C3—C4 | 173.8 (2) | C4—C4A—C8A—O1 | −1.0 (4) |
| O2—C3—C4—O3 | −2.7 (4) | C5—C4A—C8A—C8 | −1.6 (4) |
| C2—C3—C4—O3 | −178.6 (3) | C4—C4A—C8A—C8 | 179.0 (2) |
| O2—C3—C4—C4A | 176.1 (2) | O1—C2—C9—C10 | −143.9 (3) |
| C2—C3—C4—C4A | 0.3 (4) | C3—C2—C9—C10 | 40.2 (4) |
| O3—C4—C4A—C8A | 179.9 (3) | O1—C2—C9—C14 | 37.2 (3) |
| C3—C4—C4A—C8A | 1.1 (4) | C3—C2—C9—C14 | −138.7 (3) |
| O3—C4—C4A—C5 | 0.6 (4) | C14—C9—C10—O6 | −179.0 (3) |
| C3—C4—C4A—C5 | −178.3 (2) | C2—C9—C10—O6 | 2.1 (5) |
| C8A—C4A—C5—O4 | −178.9 (3) | C14—C9—C10—C11 | 1.1 (4) |
| C4—C4A—C5—O4 | 0.4 (4) | C2—C9—C10—C11 | −177.8 (3) |
| C8A—C4A—C5—C6 | 1.0 (4) | O6—C10—C11—C12 | 179.7 (4) |
| C4—C4A—C5—C6 | −179.6 (3) | C9—C10—C11—C12 | −0.4 (5) |
| O4—C5—C6—C7 | 179.4 (3) | C10—C11—C12—C13 | 0.1 (6) |
| C4A—C5—C6—C7 | −0.6 (4) | C11—C12—C13—C14 | −0.7 (6) |
| C5—C6—C7—O5 | −178.8 (3) | C12—C13—C14—C9 | 1.4 (5) |
| C5—C6—C7—C8 | 0.7 (4) | C10—C9—C14—C13 | −1.6 (4) |
| O5—C7—C8—C8A | 178.2 (3) | C2—C9—C14—C13 | 177.3 (3) |
| C6—C7—C8—C8A | −1.3 (4) |
| D—H···A | D—H | H···A | D···A | D—H···A |
| O2—H2···O6 | 0.82 | 1.85 | 2.609 (3) | 153 |
| O4—H4···O3 | 0.82 | 1.91 | 2.639 (3) | 147 |
| O5—H5···O3i | 0.82 | 2.00 | 2.803 (3) | 166 |
| O1W—H1WB···O5ii | 0.85 | 2.76 | 3.281 (5) | 121 |
| O1W—H1WB···O5iii | 0.85 | 2.28 | 2.934 (4) | 134 |
| Symmetry codes: (i) x−1/2, −y+3/2, z+1; (ii) −x+1/2, y−1/2, z−3/2; (iii) −x+1/2, y−1/2, z−1/2. |
Acknowledgements
This work was carried out within the framework of the Basic Scientific Research Program of the Academy of Sciences of the Republic of Uzbekistan.
References
Ahmad, M., Muhammad, N., Ahmad, M., Arif Lodhi, M., Mahjabeen, Jehan, N., Khan, Z., Ranjit, R., Shaheen, F. & Iqbal Choudhary, M. (2008). J. Enzyme Inhib. Med. Chem. 23, 386–390. CrossRef PubMed CAS Google Scholar
Bohmer, H., Enez, N. & Karadag, R. (2002). KOEKBOYA: Natural dyes and textiles, p. 153. Ganderkesee, Germany: Remhob Verlag. Google Scholar
Bruker (2019). SAINT. Bruker AXS Inc., Madison, Wisconsin, USA. Google Scholar
Bruker (2023). APEX5. Bruker AXS Inc., Madison, Wisconsin, USA. Google Scholar
Christopher, D. (1973). J. Systematic Floristic Botany 8, 49–110. Google Scholar
Groom, C. R., Bruno, I. J., Lightfoot, M. P. & Ward, S. C. (2016). Acta Cryst. B72, 171–179. Web of Science CrossRef IUCr Journals Google Scholar
Holmes, W. C. & Blizzard, H. J. (2010). Phytoneuron 2010-6, 1–2. Google Scholar
Krause, L., Herbst-Irmer, R., Sheldrick, G. M. & Stalke, D. (2015). J. Appl. Cryst. 48, 3–10. Web of Science CSD CrossRef ICSD CAS IUCr Journals Google Scholar
Macrae, C. F., Sovago, I., Cottrell, S. J., Galek, P. T. A., McCabe, P., Pidcock, E., Platings, M., Shields, G. P., Stevens, J. S., Towler, M. & Wood, P. A. (2020). J. Appl. Cryst. 53, 226–235. Web of Science CrossRef CAS IUCr Journals Google Scholar
Muhammed, A., Karadag, R., Torgan, E., Fouad, A. & Deveoglu, O. (2012). J. Chem. Soc. Pak. 34, 890–895. Google Scholar
Parsons, S., Flack, H. D. & Wagner, T. (2013). Acta Cryst. B69, 249–259. Web of Science CSD CrossRef CAS IUCr Journals Google Scholar
Sheldrick, G. M. (2015a). Acta Cryst. A71, 3–8. Web of Science CrossRef IUCr Journals Google Scholar
Sheldrick, G. M. (2015b). Acta Cryst. C71, 3–8. Web of Science CrossRef IUCr Journals Google Scholar
Westrip, S. P. (2010). J. Appl. Cryst. 43, 920–925. Web of Science CrossRef CAS IUCr Journals Google Scholar
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