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ISSN: 2056-9890

Mol­ecular and crystal structure of (1R,3R,4S,7R)-3-bromo-7-(bromo­meth­yl)-1,7-di­methyl-3-nitro­bi­cyclo­[2.2.1]heptan-2-one

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aTaras Shevchenko National University of Kyiv, Volodymyrska Street 60, Kyiv 01601, Ukraine, bEnamine Ltd., Winston Churchill Street 78, Kyiv 02094, Ukraine, and cInstitute of Organic Chemistry, NAS of Ukraine, Akademik Kukhar Street 5, Kyiv 02094, Ukraine
*Correspondence e-mail: [email protected]

Edited by M. Weil, Vienna University of Technology, Austria (Received 11 March 2026; accepted 7 April 2026; online 14 April 2026)

The bicyclic title compound, C10H13Br2NO3, is a camphor derivative, crystallizing in the Sohncke space group P212121, and the absolute configurations of its four chiral C atoms were unambiguously determined. The relative configuration of a bridgehead carbon atom was also confirmed by one- and two-dimensional NMR experiments. In the extended structure, weak C—H⋯O, C—H⋯Br and halogen bonds of the type Br⋯O consolidate the packing.

1. Chemical context

Camphor is a naturally occurring renewable chiral compound readily available in both possible enanti­omeric forms. Different camphor derivatives have been applied in synthetic chemistry as chiral starting materials for numerous enanti­ospecific total syntheses of steroids (Clase & Money, 1992View full citation; Stevens et al., 1983aView full citation), terpenoids (Money & Wong, 1996View full citation; Jacobs et al., 1990View full citation), vitamins (Stevens et al., 1983bView full citation, 1986View full citation; Stevens & Lawrence, 1985View full citation), as well as for the preparation of many other natural biologically active compounds and their analogues (Paquette et al., 2000View full citation; García Martínez et al., 2001View full citation). Bromo­camphors were used in the preparation of organocatalysts for asymmetric Michael additions based on functionalized bi­cyclo­[2.2.1]hexa­nes (Ričko et al., 2015View full citation) or phosphine-carbonyl ligands for Ni-catalyzed ethyl­ene oligomerization (Behzadi et al., 2020View full citation). New environmentally friendly camphor derivatives exhibit anti­fungal activity (Huang et al., 2025View full citation) and have potential in activating human carbonic anhydrase, which is relevant to neurodegenerative disorders (Mishra & Sethi, 2025View full citation). Recently, α-bromo-α-nitro-ketones have shown promising bioactivity as human DNA methyl­transferase inhibitors with micromolar active concentrations for anti­cancer research and therapy (Calzaferri et al., 2025View full citation; Serhouni et al., 2025View full citation; Ceccaldi et al., 2011View full citation; Pechalrieu et al., 2020View full citation). These types of compounds also are emerging as potential anti­malarial drugs (Reyser et al., 2023View full citation). In the context of expanding the specific chemical behavior and biological activity of α-bromo-α-nitro-ketones, the crystal structure of the title compound was determined.

[Scheme 1]

2. Structural commentary

The title compound (Fig. 1[link]) crystallizes in the Sohncke space group P212121. The presence of bromine atoms as strong anomalous scatterers in the mol­ecule makes it possible to determine unambiguously the absolute configurations of chiral centers at the C2 (R), C5 (S), C6 (R) and C7 (R) atoms by using laboratory Mo Kα radiation (Flack parameter 0.004 (17) using 680 quotients [(I+) − (I)]/[(I+) + (I)] (Parsons et al., 2013View full citation). The six-membered ring of the bi­cyclo­[2.2.1]-heptan-2-one moiety adopts a boat conformation with puckering parameters Q = 0.983 (8), Θ = 90.2 (5)°, Ψ = 244.0 (4)° (Cremer & Pople, 1975View full citation), whereby the C3, C4, C6 and C1 atoms of this ring deviate from their least-squares plane by 0.0342 Å, while the C2 and C5 atoms deviate from this plane by −0.565 (6) and −0.567 (6) Å, respectively. Both five-membered rings adopt an envelope conformation. In the C2–C3–C4–C5–C7 ring [puckering parameters Q = 0.586 (8), Ψ = 139.5 (8)°], the C2, C3, C4, C5 atoms deviate from their least-squares plane by 0.0249 Å, while the C7 atom deviates from this plane by 0.377 (5) Å. In the C2–C1–C6–C5–C7 ring [puckering parameters Q = 0.588 (8), Ψ = 70.7 (7)°], the C2, C1, C6, C5 atoms deviate from their least-squares plane by 0.0116 Å, while the C7 atom deviates from this plane by 0.377 (5) Å. The bromine substituent at the C6 atom has an exo-orientation in relation to the bi­cyclo­[2.2.1]-heptan-2-one fragment [the C4—C5—C6—Br1 torsion angle is 165.9 (5)°] The nitro group has an endo-orientation and is turned relatively to the C5—C6 bond [the C4—C5—C6—N1 and C5—C6—N1—O3 torsion angles are 47.4 (7)° and 67.4 (8)°, respectively]. The Br2 atom is located in a syn-clinal position in relation to the C5—C7 bond [the C5—C7—C9—Br2 torsion angle is −53.9 (7)°].

[Figure 1]
Figure 1
Mol­ecular structure of the title compound with displacement ellipsoids drawn at the 50% probability level.

3. Supra­molecular features

The title compound does not contain any functional groups acting as a strong donor for inter­molecular hydrogen-bonding. However, weak Csp3—H⋯O and Csp3—H⋯Br hydrogen bonds are observed in the crystal structure (Table 1[link]). In addition, the distance between the Br1 and O1 atoms of 3.086 (5) Å (symmetry code −Mathematical equation + x, Mathematical equation − y, 1 − z) proved to be shorter than the Br⋯O van der Waals radii sum of 3.37 Å (Hu et al., 2014View full citation). The mutual orientation of the corresponding functional groups of the neighboring mol­ecules [the C6—Br1⋯O1 angle is 167.0 (2)°] allows us to consider this inter­action as a halogen bond (Cavallo et al., 2016View full citation). The weak character of the inter­molecular inter­actions in the extended structure makes it impossible to identify a characteristic structural motif (Fig. 2[link]).

Table 1
Details of weak inter­molecular hydrogen bonds (Å, °)

Inter­action Symmetry operation H⋯Aa DA D—H⋯A
C8—H8B⋯O2 −1 + x, y, z 2.49 3.46 (1) 169
C9—H9B⋯O1 1 − x, Mathematical equation + y, Mathematical equation − z 2.44 3.364 (9) 154
C9—H9A⋯Br1 Mathematical equation − x, 1 − y, −Mathematical equation + z 3.04 3.730 (7) 128
Note: (a The van der Waals radii sums are: H⋯O 2.58 Å, H⋯Br 3.07 Å (Hu et al., 2014View full citation).
[Figure 2]
Figure 2
Mol­ecular packing in the crystal structure of the title compound in a projection along the a axis. Weak inter­molecular inter­actions are shown as blue dashed lines.

4. Database survey

A search of the Cambridge Structure Database (CSD, version 6.00, last update April 2025; Groom et al., 2016View full citation) revealed only eight structures of bi­cyclo­[2.2.1]heptan derivatives containing geminal bromine and nitro substituents: AWIGIX, AWIGOD, AWIGUJ, AWIHAQ, BRHPCN01 (Lemmerer & Michael, 2011View full citation), BNFNCH (Rerat, 1968View full citation), BRHPCN (Blom et al., 1980View full citation), and BRONCP (Brueckner et al., 1962View full citation). The conformation of the bi­cyclo­[2.2.1]heptane fragment is identical in the structure of the title compound and in all these mol­ecules, despite the fact that none of the similar compounds found in the CSD contain a carbonyl group and, consequently, a carbon atom with sp2 hybridization in the bicyclic core. The orientation of the geminal bromine and nitro substituents was also found to be identical in the structure of the title compound and previously studied compounds.

5. Synthesis and crystallization

A stirred mixture of (1R,3S,4S,7R)-3-bromo-7-(bromo­meth­yl)-1,7-dimethyl­[2.2.1]heptan-2-one (98%, Aldrich) (0.76 g, 2.45 mmol) and 60% nitric acid (10 ml) was refluxed under an argon atmosphere for 72 h. Nitric acid was evaporated under reduced pressure and distilled water (50 ml) was added to the residue. The remaining mixture was extracted with toluene (3 × 20 ml). The organic phase was dried over Na2SO4 and the solvent evaporated under reduced pressure. The crude product was crystallized from 2-propanol; yield 0.55 g (63%) as a white solid. X-ray-quality single crystals of suitable dimensions were obtained by further recrystallization from 2-propanol over a period of 24 h. M.p.: 371–372 K; [α]20/D = +43.8 (c 0.5, MeOH).

The relative configuration at the bridge carbon atom connecting the CH2Br and CH3 groups of the compound was confirmed by comprehensive analysis of the 1D 1H-NMR and 13C-NMR spectra and results of 2D experiments – COSY, HMBC, HSQC, and NOESY, which were run in CD3OD (see supporting information).

6. Refinement

Crystal data, data collection and structure refinement details are summarized in Table 2[link]. Hydrogen atoms were placed at calculated positions and refined as riding with Uiso(H) = nUeq(C), where n = 1.5 for methyl groups and n = 1.2 for other H atoms.

Table 2
Experimental details

Crystal data
Chemical formula C10H13Br2NO3
Mr 355.03
Crystal system, space group Orthorhombic, P212121
Temperature (K) 173
a, b, c (Å) 7.5173 (11), 12.0316 (18), 13.9292 (19)
V3) 1259.8 (3)
Z 4
Radiation type Mo Kα
μ (mm−1) 6.43
Crystal size (mm) 0.24 × 0.14 × 0.11
 
Data collection
Diffractometer Bruker APEXII CCD
Absorption correction Multi-scan (SADABS; Krause et al., 2015View full citation)
Tmin, Tmax 0.343, 0.746
No. of measured, independent and observed [I > 2σ(I)] reflections 10299, 2890, 2052
Rint 0.077
(sin θ/λ)max−1) 0.650
 
Refinement
R[F2 > 2σ(F2)], wR(F2), S 0.040, 0.089, 0.97
No. of reflections 2890
No. of parameters 147
H-atom treatment H-atom parameters constrained
Δρmax, Δρmin (e Å−3) 0.62, −0.64
Absolute structure Flack x determined using 680 quotients [(I+)−(I)]/[(I+)+(I)] (Parsons et al., 2013View full citation)
Absolute structure parameter 0.004 (17)
Computer programs: SAINT and APEX4 (Bruker, 2021View full citation), SHELXT (Sheldrick, 2015aView full citation), SHELXL (Sheldrick, 2015bView full citation), OLEX2 (Dolomanov et al., 2009View full citation), Mercury (Macrae et al., 2020View full citation) and publCIF (Westrip, 2010View full citation).

Supporting information


Computing details top

(1R,3R,4S,7R)-3-Bromo-7-(bromomethyl)-1,7-dimethyl-3-nitrobicyclo[2.2.1]heptan-2-one top
Crystal data top
C10H13Br2NO3Dx = 1.872 Mg m3
Mr = 355.03Mo Kα radiation, λ = 0.71073 Å
Orthorhombic, P212121Cell parameters from 1737 reflections
a = 7.5173 (11) Åθ = 2.2–21.0°
b = 12.0316 (18) ŵ = 6.43 mm1
c = 13.9292 (19) ÅT = 173 K
V = 1259.8 (3) Å3Prism, colourless
Z = 40.24 × 0.14 × 0.11 mm
F(000) = 696
Data collection top
Bruker APEXII CCD
diffractometer
2052 reflections with I > 2σ(I)
φ and ω scansRint = 0.077
Absorption correction: multi-scan
(SADABS; Krause et al., 2015)
θmax = 27.5°, θmin = 2.2°
Tmin = 0.343, Tmax = 0.746h = 99
10299 measured reflectionsk = 1513
2890 independent reflectionsl = 1818
Refinement top
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH-atom parameters constrained
R[F2 > 2σ(F2)] = 0.040 w = 1/[σ2(Fo2)]
where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.089(Δ/σ)max < 0.001
S = 0.97Δρmax = 0.62 e Å3
2890 reflectionsΔρmin = 0.64 e Å3
147 parametersAbsolute structure: Flack x determined using 680 quotients [(I+)-(I-)]/[(I+)+(I-)] (Parsons et al. (2013)
0 restraintsAbsolute structure parameter: 0.004 (17)
Primary atom site location: dual
Special details top

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
Br10.32898 (11)0.32332 (6)0.52580 (5)0.0388 (2)
Br20.01737 (10)0.69501 (7)0.37509 (6)0.0470 (3)
C10.5113 (9)0.3955 (6)0.3535 (5)0.0273 (16)
C20.4454 (9)0.4818 (6)0.2852 (5)0.0272 (17)
C30.5662 (10)0.5843 (6)0.3040 (5)0.0359 (19)
H3A0.6928290.5621380.3078390.043*
H3B0.5522300.6404380.2525610.043*
C40.4999 (10)0.6299 (6)0.4014 (5)0.0342 (18)
H4A0.5983780.6346160.4483510.041*
H4B0.4459910.7045000.3936790.041*
C50.3596 (10)0.5440 (6)0.4332 (5)0.0283 (16)
H50.2774150.5697170.4851260.034*
C60.4610 (9)0.4356 (6)0.4554 (5)0.0279 (17)
C70.2676 (9)0.5160 (6)0.3356 (5)0.0257 (16)
C80.1277 (9)0.4220 (7)0.3342 (6)0.037 (2)
H8A0.0772220.4155920.2695920.056*
H8B0.0328060.4391980.3800880.056*
H8C0.1844490.3516630.3520650.056*
C90.1825 (11)0.6178 (6)0.2886 (5)0.0345 (17)
H9A0.1175600.5941860.2302880.041*
H9B0.2773320.6700430.2686590.041*
C100.4378 (11)0.4419 (7)0.1817 (5)0.044 (2)
H10A0.5570360.4194840.1609080.065*
H10B0.3946330.5021950.1405640.065*
H10C0.3568320.3782990.1770470.065*
N10.6294 (10)0.4597 (5)0.5205 (4)0.0320 (15)
O10.5882 (7)0.3095 (5)0.3363 (3)0.0434 (13)
O20.7630 (8)0.4518 (5)0.4830 (5)0.0531 (16)
O30.5953 (8)0.4899 (6)0.5995 (4)0.0600 (18)
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
Br10.0510 (5)0.0335 (4)0.0318 (4)0.0061 (4)0.0032 (4)0.0069 (4)
Br20.0417 (5)0.0446 (5)0.0546 (5)0.0128 (4)0.0004 (4)0.0050 (4)
C10.028 (4)0.025 (4)0.029 (4)0.003 (3)0.000 (3)0.000 (3)
C20.029 (4)0.028 (4)0.024 (4)0.001 (3)0.001 (3)0.001 (3)
C30.035 (4)0.038 (5)0.035 (5)0.003 (3)0.001 (3)0.004 (4)
C40.040 (4)0.024 (4)0.039 (4)0.005 (4)0.003 (4)0.004 (3)
C50.034 (4)0.026 (4)0.026 (4)0.001 (3)0.006 (3)0.002 (3)
C60.028 (4)0.025 (4)0.030 (4)0.002 (3)0.000 (3)0.001 (3)
C70.023 (4)0.028 (4)0.026 (4)0.002 (3)0.003 (3)0.001 (3)
C80.029 (4)0.042 (5)0.040 (5)0.006 (4)0.003 (4)0.000 (4)
C90.037 (4)0.036 (4)0.031 (4)0.001 (4)0.001 (4)0.004 (3)
C100.056 (5)0.054 (5)0.021 (4)0.009 (4)0.004 (4)0.000 (4)
N10.058 (5)0.025 (3)0.014 (3)0.007 (3)0.014 (3)0.005 (3)
O10.056 (3)0.035 (3)0.039 (3)0.016 (3)0.000 (3)0.007 (3)
O20.046 (4)0.053 (4)0.061 (4)0.001 (3)0.016 (3)0.005 (4)
O30.051 (4)0.086 (5)0.043 (4)0.012 (3)0.007 (3)0.000 (4)
Geometric parameters (Å, º) top
Br1—C61.941 (7)C5—C61.542 (9)
Br2—C91.963 (7)C5—C71.562 (9)
C1—C21.493 (10)C6—N11.584 (9)
C1—C61.546 (10)C7—C81.544 (10)
C1—O11.209 (8)C7—C91.529 (10)
C2—C31.553 (10)C8—H8A0.9800
C2—C71.565 (9)C8—H8B0.9800
C2—C101.520 (10)C8—H8C0.9800
C3—H3A0.9900C9—H9A0.9900
C3—H3B0.9900C9—H9B0.9900
C3—C41.546 (10)C10—H10A0.9800
C4—H4A0.9900C10—H10B0.9800
C4—H4B0.9900C10—H10C0.9800
C4—C51.543 (10)N1—O21.136 (7)
C5—H51.0000N1—O31.187 (8)
C2—C1—C6106.7 (6)C5—C6—C1101.6 (5)
O1—C1—C2128.8 (6)C5—C6—N1110.8 (5)
O1—C1—C6124.5 (6)N1—C6—Br1104.3 (4)
C1—C2—C3104.5 (6)C5—C7—C294.0 (5)
C1—C2—C7100.4 (5)C8—C7—C2112.5 (6)
C1—C2—C10113.4 (6)C8—C7—C5118.0 (6)
C3—C2—C7102.4 (6)C9—C7—C2112.1 (6)
C10—C2—C3115.6 (6)C9—C7—C5112.7 (6)
C10—C2—C7118.5 (6)C9—C7—C8107.2 (6)
C2—C3—H3A111.0C7—C8—H8A109.5
C2—C3—H3B111.0C7—C8—H8B109.5
H3A—C3—H3B109.0C7—C8—H8C109.5
C4—C3—C2104.0 (6)H8A—C8—H8B109.5
C4—C3—H3A111.0H8A—C8—H8C109.5
C4—C3—H3B111.0H8B—C8—H8C109.5
C3—C4—H4A111.0Br2—C9—H9A109.1
C3—C4—H4B111.0Br2—C9—H9B109.1
H4A—C4—H4B109.0C7—C9—Br2112.4 (5)
C5—C4—C3103.6 (6)C7—C9—H9A109.1
C5—C4—H4A111.0C7—C9—H9B109.1
C5—C4—H4B111.0H9A—C9—H9B107.9
C4—C5—H5115.0C2—C10—H10A109.5
C4—C5—C7101.3 (5)C2—C10—H10B109.5
C6—C5—C4106.7 (6)C2—C10—H10C109.5
C6—C5—H5115.0H10A—C10—H10B109.5
C6—C5—C7102.2 (5)H10A—C10—H10C109.5
C7—C5—H5115.0H10B—C10—H10C109.5
C1—C6—Br1111.8 (5)O2—N1—C6115.3 (6)
C1—C6—N1112.8 (5)O2—N1—O3130.0 (8)
C5—C6—Br1115.9 (5)O3—N1—C6114.5 (6)
Br1—C6—N1—O2126.5 (6)C5—C6—N1—O2108.1 (7)
Br1—C6—N1—O358.0 (7)C5—C6—N1—O367.4 (8)
C1—C2—C3—C473.6 (7)C5—C7—C9—Br253.9 (7)
C1—C2—C7—C554.9 (6)C6—C1—C2—C369.1 (7)
C1—C2—C7—C867.7 (7)C6—C1—C2—C736.8 (7)
C1—C2—C7—C9171.3 (6)C6—C1—C2—C10164.1 (6)
C1—C6—N1—O24.9 (9)C6—C5—C7—C254.3 (6)
C1—C6—N1—O3179.5 (6)C6—C5—C7—C863.9 (8)
C2—C1—C6—Br1126.5 (5)C6—C5—C7—C9170.2 (6)
C2—C1—C6—C52.3 (7)C7—C2—C3—C430.7 (7)
C2—C1—C6—N1116.3 (6)C7—C5—C6—Br188.1 (5)
C2—C3—C4—C54.8 (7)C7—C5—C6—C133.3 (6)
C2—C7—C9—Br2158.4 (5)C7—C5—C6—N1153.3 (5)
C3—C2—C7—C552.6 (6)C8—C7—C9—Br277.6 (6)
C3—C2—C7—C8175.3 (6)C10—C2—C3—C4161.0 (6)
C3—C2—C7—C963.8 (7)C10—C2—C7—C5178.8 (6)
C3—C4—C5—C667.8 (7)C10—C2—C7—C856.2 (9)
C3—C4—C5—C738.7 (7)C10—C2—C7—C964.8 (8)
C4—C5—C6—Br1165.9 (5)O1—C1—C2—C3111.5 (8)
C4—C5—C6—C172.6 (6)O1—C1—C2—C7142.7 (7)
C4—C5—C6—N147.4 (7)O1—C1—C2—C1015.3 (11)
C4—C5—C7—C255.8 (6)O1—C1—C6—Br152.9 (9)
C4—C5—C7—C8173.9 (6)O1—C1—C6—C5177.2 (7)
C4—C5—C7—C960.2 (7)O1—C1—C6—N164.2 (9)
Details of weak intermolecular hydrogen bonds (Å, °) top
InteractionSymmetry operationH···AaD···AD—H···A
C8—H8B···O2-1 + x, y, z2.493.46 (1)169
C9—H9B···O11 - x, 1/2 + y, 1/2 - z2.443.364 (9)154
C9—H9A···Br11/2 - x, 1 - y, -1/2 + z3.043.730 (7)128
Note: (a The van der Waals radii sums are: H···O 2.58 Å, H···Br 3.07 Å (Hu et al., 2014).
 

Footnotes

Additional address: Enamine Ltd., Winston Churchill Street 78, Kyiv 02094, Ukraine

Acknowledgements

The authors are grateful to the FAIRE programme provided by the Cambridge Crystallographic Data Centre (CCDC) for the opportunity to use the Cambridge Structural Database (CSD) and associated software.

References

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