research communications
Midodrine hydrochloride Form A, C12H19N2O4+·Cl−
aNorth Central College, Department of Chemistry, 131 S. Loomis St., Naperville, IL 60540, USA, bNorth Central College, Department of Physics, 131 S. Loomis St., Naperville, IL 60540, USA, cIllinois Institute of Technology, Department of Chemistry, 3101 S. Dearborn St., Chicago, IL 60616, USA, and dICDD, 12 Campus Blvd., Newtown Square, PA 19073-3273, USA
*Correspondence e-mail: [email protected]
The of midodrine hydrochloride Form A (systematic name: {[2-(2,5-dimethoxyphenyl)-2-hydroxyethyl]carbamoyl}methanaminium chloride, C12H19N2O4+·Cl−) has been solved and refined using synchrotron X-ray powder diffraction data, and optimized using density functional theory techniques. Midodrine hydrochloride Form A crystallizes in space group P21/c (#14). The is characterized by layers perpendicular to the c-axis direction. The Cl anions reside in the center of the layer. Hydrogen bonds are prominent in the structure. Each of the three H on the protonated N acts as a donor – one to the carbonyl group and the other two to the Cl ion. The hydroxyl group and the amide also act as donors to Cl. Considering the classical hydrogen bonds, the Cl ion is four-coordinate.
1. Chemical context
Midodrine hydrochloride (marketed as ProAmatine, among others) is used to treat hypotension (low blood pressure) and urinary incontinence. In particular, midodrine HCl treats symptomatic low blood pressure upon standing from a sitting or laying down position. The (CAS Registry Number 43218-56-0) is 2-amino-N-[2-(2,5-dimethoxyphenyl)-2-hydroxyethyl]acetamide hydrochloride.
A process for preparing midodrine hydrochloride has been claimed in US Patent Application US 2022/0144754 A1 (Singh et al., 2022
; Cadila Healthcare Ltd.), and powder diffraction data labeled as Form A are provided but no crystal structure was reported.
This work was carried out as part of a project (Kaduk et al., 2014
) to determine the crystal structures of large-volume commercial pharmaceuticals, and includes high-quality powder diffraction data for them in the Powder Diffraction File (Kabekkodu et al., 2024
).
2. Structural commentary
The synchrotron pattern of midodrine hydrochloride is similar enough to that reported by Singh et al. (2022
) for Form A (Fig. 1
) to conclude that they represent the same material. The patent pattern exhibits small displacement/transparency peak position error, as well as significant preferred orientation.
| Figure 1 Comparison of the synchrotron pattern from this study of midodrine hydrochloride (black) to that reported for Form A by Singh et al. (2022 |
The root-mean-square deviation of the non-H atoms in the Rietveld-refined and VASP-optimized structures of midodrine hydrochloride Form A, calculated using the Mercury CSD-Materials/Search/Crystal Packing Similarity tool (Macrae et al., 2020
) is 0.050 Å (Fig. 2
); the structures are essentially identical. The root-mean-square Cartesian displacement of the non-H atoms in the refined and optimized structures of the cation, calculated using the Mercury Calculate/Molecule Overlay tool, is 0.042 Å (Fig. 3
). The absolute position difference of the Cl is 0.033 Å. The agreements are within the normal range for correct structures (van de Streek & Neumann, 2014
). The asymmetric unit is illustrated in Fig. 4
. The remaining discussion will emphasize the VASP-optimized structure.
| Figure 2 Comparison of the Rietveld-refined (colored by atom type) and VASP-optimized (pale green) structures of midodrine hydrochloride Form A, calculated using the Mercury CSD-Materials/Search/Crystal Packing Similarity tool. The root-mean-square Cartesian displacement is 0.050 Å. Image generated using Mercury (Macrae et al., 2020 |
| Figure 3 Comparison of the refined structure of the cation in midodrine hydrochloride Form A (red) to the VASP-optimized structure (blue). The comparison was generated using the Mercury Calculate/Molecule Overlay tool; the r.m.s. deviation is 0.042 Å. Image generated using Mercury (Macrae et al., 2020 |
| Figure 4 The asymmetric unit of midodrine hydrochloride Form A, with the atom numbering. The atoms are represented by 50% probability spheroids/ellipsoids. Image generated using Mercury (Macrae et al., 2020 |
All of the bond distances, bond angles, and torsion angles (Table 1
) fall within the normal ranges indicated by a Mercury Mogul Geometry check (Macrae et al., 2020
). Quantum chemical geometry optimization of the isolated midodrine cation (DFT/B3LYP/6-31G*/water) using Spartan '24 (Wavefunction, 2025
) indicated that the observed conformation is 4.4 kcal mol−1 higher in energy than a local minimum, which has an essentially identical conformation (r.m.s. deviation = 0.066 Å). The global minimum-energy conformation (MMFF force field) is 98.1 kcal mol−1 lower in energy, but is unreasonably folded on itself to form intramolecular hydrogen bonds. Intermolecular interactions are important in determining the solid-state conformation.
|
3. Supramolecular features
The (Fig. 5
) is characterized by layers perpendicular to the c-axis direction. The Cl anions reside in the center of the layer. The Mercury Aromatics Analyser indicates three moderate interactions (d = 5.18, 5.18, and 6.08 Å), which include both slipped stacking and end-face interactions. The mean plane of the aromatic rings is approximately (3,4,10).
| | Figure 5 Crystal structure of midodrine hydrochloride Form A, viewed down the a-axis. Image generated using DIAMOND (Crystal Impact, 2025 |
Analysis of the contributions to the total crystal energy of the structure using the Forcite module of Materials Studio (Dassault Systèmes, 2025
) indicated that the intramolecular energy is dominated by angle distortion terms. The intermolecular energy is small and dominated by van der Waals repulsions, which in this force field based analysis include hydrogen bonds. The hydrogen bonds are better discussed using the results of the DFT calculation.
Hydrogen bonds (Table 2
) are prominent in the structure. Each of the three H on the protonated N6 acts as a donor – one to the carbonyl group O4 and the other two to Cl38. The energy of the N—H⋯O hydrogen bond was calculated using the correlation of Wheatley & Kaduk (2019
). The hydroxyl group O1—H26 also acts as a donor to Cl38. The energy of the O—H⋯Cl bond was calculated using the correlation of Kaduk (2002
). The amide N5—H23 also acts as a donor to Cl38. Considering the classical hydrogen bonds, the Cl is four-coordinate. These hydrogen bonds result in rings and chains, with graph sets (Etter, 1990
; Bernstein et al., 1995
; Motherwell et al., 2000
) R22(10), C21(7), C21(10), R42(20), and larger features. The result is a complex network of hydrogen bonds in the center of the layers (Fig. 6
). C—H⋯Cl and C—H⋯O hydrogen bonds also contribute to the lattice energy.
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Figure 6 The hydrogen bonding pattern in the layers of midodrine hydrochloride Form A. Image generated using Mercury (Macrae et al., 2020 |
The volume enclosed by the Hirshfeld surface of midodrine hydrochloride Form A (Fig. 7
, Hirshfeld, 1977
, Spackman et al., 2021
) is 343.78 Å3, 97.74% of 1/4 of the unit-cell volume. The packing density is thus typical. The close contacts (red in Fig. 7
) involve the hydrogen bonds. The volume/non-hydrogen atom is normal, at 18.5 Å3.
| Figure 7 The Hirshfeld surface of midodrine hydrochloride Form A. Intermolecular contacts longer than the sums of the van der Waals radii are colored blue, and contacts shorter than the sums of the radii are colored red. Contacts equal to the sums of radii are white. Image generated using CrystalExplorer (Spackman et al., 2021 |
The Bravais–Friedel–Donnay–Harker (Bravais, 1866
; Friedel, 1907
; Donnay & Harker, 1937
) algorithm suggests that we might expect platy morphology for midodrine hydrochloride Form A, with {002} as the major faces. A 2nd-order spherical harmonic model for preferred orientation was included. The texture index was 1.003, indicating that the preferred orientation was negligible in this rotated capillary specimen.
4. Database survey
A search in the Cambridge Structural Database (CSD 2026.1.0; Groom et al., 2016
) yielded 16 hits, but no structures of midodrine or its derivatives.
5. Synthesis and crystallization
Midodrine hydrochloride was a commercial reagent, purchased from TargetMol (Batch #150940), and was used as-received.
6. Refinement
Crystal data, data collection and structure details are summarized in Table 3
. The white powder was packed into a 1.5 mm diameter Kapton capillary, and rotated during the measurement at ∼50 Hz. The powder pattern was measured at 295 K at beam line 11-BM (Lee et al., 2008
; Wang et al., 2008
; Antao et al., 2008
) of the Advanced Photon Source at Argonne National Laboratory using a wavelength of 0.4687342 Å from 0.5–50° 2θ with a step size of 0.001° and a counting time of 0.1 sec/step. The high-resolution powder diffraction data were collected using twelve silicon crystal analyzers that allow for high angular resolution, high precision, and accurate peak positions. A mixture of silicon (NIST SRM 640c) and alumina (NIST SRM 676a) standards (ratio Al2O3:Si = 2:1 by weight) was used to calibrate the instrument and refine the monochromatic wavelength used in the experiment.
|
The pattern was indexed on a primitive monoclinic with a = 5.17847, b = 8.25254, c = 32.94869 Å, β = 92.757°, V = 1406.4 Å3, and Z = 4 using N-TREOR as incorporated into EXPO2014 (Altomare et al., 2013
). The suggested space group was P21/c, which was confirmed by the successful solution and refinement of the structure.
The molecular structure of midodrine was downloaded from PubChem (Kim et al., 2023
) as Conformer3D_COMPOUND_CID_4195.sdf. It was converted to a *.mol2 file using Mercury (Macrae et al., 2020
), and to a Fenske–Hall Z-matrix using OpenBabel (O'Boyle et al., 2011
). The structure was solved by parallel tempering techniques as implemented in FOX (Favre-Nicolin & Černý, 2002
) using a midodrine molecule and a Cl atom as fragments, and by Monte Carlo simulated annealing techniques as implemented in EXPO2014 (Altomare et al., 2013
) and DASH (David et al., 2006
). All three programs yielded equivalent structures. The FOX structure was selected for H37 was added to N6 using Mercury.
Rietveld was carried out using GSAS-II (Toby & Von Dreele, 2013
). Only the 1.5–28.0° portion of the pattern was included in the refinements (dmin = 0.969 Å). All non-H bond distances and angles were subjected to restraints, based on a Mercury/Mogul Geometry Check (Sykes et al., 2011
; Bruno et al., 2004
). The Mogul average and standard deviation for each quantity were used as the restraint parameters. The phenyl ring was restrained to be planar. The restraints contributed 1.5% to the overall χ2. The hydrogen atoms were included in calculated positions, which were recalculated during the refinement using Materials Studio (Dassault Systèmes, 2025
). The Uiso of the non-H atoms were grouped by chemical similarity. The Uiso of the H atoms were fixed at 1.2 × the Uiso of the heavy atom to which they are attached. The Cl was refined anisotropically. The peak profiles were described using the generalized microstrain model (Stephens, 1999
). The background was modeled using a six-term shifted Chebyshev polynomial, with peaks at 1.58 and 5.56° to model the scattering from the Kapton capillary and any amorphous component of the sample.
The final refinement of 96 variables using 26,501 observations and 42 restraints yielded the residuals Rwp = 0.06154 and GOF = 1.42. The largest peak (0.77 Å from O3) and hole (0.37 Å from O3) in the difference-Fourier map were 0.17 (4) and −0.17 (4) e Å−3, respectively. The final Rietveld plot is shown in Fig. 8
. The largest features in the normalized error plot are in the shapes of some of the strong low-angle peaks.
| Figure 8 The Rietveld plot for midodrine hydrochloride Form A. The blue crosses represent the observed data points, and the green line is the calculated pattern. The cyan curve is the normalized error plot, and the red line is the background curve. The blue tick marks indicate the peak positions. The vertical scale has been multiplied by a factor of 10× for 2θ > 11.6°. |
The of midodrine hydrochloride Form A was optimized (fixed experimental unit cell) with density functional theory techniques using VASP (Kresse & Furthmüller, 1996
) through the MedeA graphical interface (Materials Design, 2024
). The calculation was carried out on 32 cores of a 144-core (768 Gb memory) HPE Superdome Flex 280 Linux server at North Central College. The calculation used the GGA-PBE functional, a plane wave cutoff energy of 400.0 eV, and a k-point spacing of 0.5 Å−1 leading to a 3 × 2 × 1 mesh, and took ∼2.6 h. Single-point density functional theory calculations (fixed experimental cell) and population analysis were carried out using CRYSTAL23 (Erba et al., 2023
) and CRYSTAL17 (Dovesi et al., 2018
). The basis sets for the H, C, N and O atoms in the calculation were those of Gatti et al. (1994
), and that for Cl was from Peintinger et al. (2013
). The calculations were run on a 3.5 GHz PC using 8 k-points and the B3LYP functional, and took ∼1.8 hr. The powder pattern has been submitted to ICDD for inclusion in the Powder Diffraction File™ (PDF®).
Supporting information
contains datablocks midodrine, midodrine_midodrine_VASP. DOI: https://doi.org/10.1107/S2056989026004810/oi2037sup1.cif
Supporting information file. DOI: https://doi.org/10.1107/S2056989026004810/oi2037midodrinesup2.cml
| C12H19N2O4+·Cl− | V = 1407.08 (1) Å3 |
| Mr = 290.75 | Z = 4 |
| Monoclinic, P21/c | Dx = 1.373 Mg m−3 |
| a = 5.17893 (2) Å | Synchrotron radiation, λ = 0.46873 Å |
| b = 8.25455 (3) Å | µ = 0.03 mm−1 |
| c = 32.95227 (15) Å | T = 295 K |
| β = 87.2465 (3)° | cylinder, 2.0 × 1.5 mm |
| 11-BM, APS diffractometer | Scan method: step |
| Specimen mounting: Kapton capillary | 2θmin = 0.510°, 2θmax = 49.995°, 2θstep = 0.001° |
| Data collection mode: transmission |
| Least-squares matrix: full | 96 parameters |
| Rp = 0.049 | 42 restraints |
| Rwp = 0.061 | 34 constraints |
| Rexp = 0.044 | Weighting scheme based on measured s.u.'s |
| R(F2) = 0.03133 | (Δ/σ)max = 8.514 |
| 49486 data points | Background function: Background function: "chebyschev-1" function with 6 terms: 35.73(7), -4.92(12), -6.39(12), 3.98(12), -3.39(9), -0.15(7), Background peak parameters: pos, int, sig, gam: 1.580(20), 4.39(21)e3, 2.09(13)e3, 0.100, 5.557(6), 4.34(6)e3, 2.74(7)e3, 0.100, |
| Profile function: Finger-Cox-Jephcoat function parameters U, V, W, X, Y, SH/L: peak variance(Gauss) = Utan(Th)2+Vtan(Th)+W: peak HW(Lorentz) = X/cos(Th)+Ytan(Th); SH/L = S/L+H/L U, V, W in (centideg)2, X & Y in centideg 1.163, -0.126, 0.063, 0.000, 0.000, 0.002, | Preferred orientation correction: Simple spherical harmonic correction Order = 2 Coefficients: 0:0:C(2,-2) = -0.0581(18); 0:0:C(2,0) = 0.078(4); 0:0:C(2,2) = -0.0919(24) |
| x | y | z | Uiso*/Ueq | ||
| O1 | 1.0970 (4) | 0.7465 (3) | 0.57295 (6) | 0.0323 (4)* | |
| O2 | 0.6632 (4) | 0.9002 (2) | 0.67443 (6) | 0.0391 (5)* | |
| O3 | 1.3249 (4) | 0.3806 (2) | 0.68910 (6) | 0.0391 (5)* | |
| O4 | 1.5002 (4) | 1.0459 (3) | 0.54902 (6) | 0.0323 (4)* | |
| N5 | 1.0987 (4) | 1.0938 (3) | 0.57585 (7) | 0.0323 (4)* | |
| N6 | 1.4661 (5) | 1.2607 (3) | 0.48827 (8) | 0.0323 (4)* | |
| C7 | 0.9770 (5) | 0.8305 (3) | 0.60708 (6) | 0.0323 (4)* | |
| C8 | 0.9847 (5) | 0.7310 (3) | 0.64575 (6) | 0.0311 (5)* | |
| C9 | 1.1161 (5) | 0.9912 (3) | 0.61138 (8) | 0.0323 (4)* | |
| C10 | 0.8228 (5) | 0.7694 (3) | 0.67930 (6) | 0.0311 (5)* | |
| C11 | 1.1581 (5) | 0.6018 (3) | 0.64869 (7) | 0.0311 (5)* | |
| C12 | 1.1601 (5) | 0.5099 (3) | 0.68409 (8) | 0.0311 (5)* | |
| C13 | 0.8299 (6) | 0.6787 (3) | 0.71481 (7) | 0.0311 (5)* | |
| C14 | 0.9978 (6) | 0.5498 (3) | 0.71712 (7) | 0.0311 (5)* | |
| C15 | 1.2919 (5) | 1.1156 (4) | 0.54837 (8) | 0.0323 (4)* | |
| C16 | 1.2304 (5) | 1.2225 (4) | 0.51286 (9) | 0.0323 (4)* | |
| C17 | 0.4688 (6) | 0.9328 (4) | 0.70550 (9) | 0.0391 (5)* | |
| C18 | 1.5119 (6) | 0.3451 (4) | 0.65719 (9) | 0.0391 (5)* | |
| H19 | 0.76985 | 0.86202 | 0.60297 | 0.0388 (5)* | |
| H20 | 1.32549 | 0.96936 | 0.61586 | 0.0388 (5)* | |
| H21 | 1.04032 | 1.05789 | 0.63909 | 0.0388 (5)* | |
| H22 | 1.28492 | 0.57675 | 0.62242 | 0.0373 (6)* | |
| H23 | 0.93892 | 1.17104 | 0.57467 | 0.0388 (5)* | |
| H24 | 0.70477 | 0.71120 | 0.74223 | 0.0373 (6)* | |
| H25 | 1.00097 | 0.47574 | 0.74497 | 0.0373 (6)* | |
| H26 | 0.98954 | 0.64869 | 0.56984 | 0.0388 (5)* | |
| H27 | 1.09480 | 1.16753 | 0.49287 | 0.0388 (5)* | |
| H28 | 1.13894 | 1.33833 | 0.52442 | 0.0388 (5)* | |
| H29 | 0.35462 | 1.03463 | 0.69851 | 0.0469 (6)* | |
| H30 | 0.34623 | 0.82426 | 0.71243 | 0.0469 (6)* | |
| H31 | 0.55160 | 0.95960 | 0.73490 | 0.0469 (6)* | |
| H32 | 1.41042 | 0.31642 | 0.62801 | 0.0469 (6)* | |
| H33 | 1.61746 | 0.24085 | 0.66595 | 0.0469 (6)* | |
| H34 | 1.63568 | 0.44937 | 0.65061 | 0.0469 (6)* | |
| H35 | 1.60707 | 1.30873 | 0.50782 | 0.0388 (5)* | |
| H36 | 1.42630 | 1.35768 | 0.46795 | 0.0388 (5)* | |
| H37 | 1.53415 | 1.16293 | 0.47244 | 0.0388 (5)* | |
| Cl38 | 0.2652 (2) | 0.55463 (11) | 0.44075 (3) | 0.0394 |
| U11 | U22 | U33 | U12 | U13 | U23 | |
| Cl38 | 0.0457 (9) | 0.0273 (9) | 0.0446 (9) | 0.0127 (16) | 0.0036 (15) | −0.0002 (15) |
| O1—C7 | 1.437 (2) | C15—O4 | 1.224 (2) |
| O1—H26 | 0.989 (2) | C15—N5 | 1.329 (2) |
| O2—C10 | 1.3741 (17) | C15—C16 | 1.5115 (19) |
| O2—C17 | 1.427 (3) | C16—N6 | 1.467 (3) |
| O3—C12 | 1.3814 (19) | C16—C15 | 1.5115 (19) |
| O3—C18 | 1.425 (3) | C16—H27 | 1.085 (3) |
| O4—C15 | 1.224 (2) | C16—H28 | 1.125 (3) |
| N5—C9 | 1.451 (2) | C17—O2 | 1.427 (3) |
| N5—C15 | 1.329 (2) | C17—H29 | 1.060 (3) |
| N5—H23 | 1.047 (2) | C17—H30 | 1.115 (3) |
| N6—C16 | 1.467 (3) | C17—H31 | 1.100 (3) |
| N6—H35 | 1.072 (3) | C18—O3 | 1.425 (3) |
| N6—H36 | 1.070 (2) | C18—H32 | 1.142 (3) |
| N6—H37 | 1.015 (3) | C18—H33 | 1.067 (3) |
| C7—O1 | 1.437 (2) | C18—H34 | 1.089 (3) |
| C7—C8 | 1.5181 (10) | H19—C7 | 1.118 (3) |
| C7—C9 | 1.519 (3) | H20—C9 | 1.116 (3) |
| C7—H19 | 1.118 (3) | H21—C9 | 1.121 (3) |
| C8—C7 | 1.5181 (10) | H22—C11 | 1.0811 (19) |
| C8—C10 | 1.3914 (18) | H23—N5 | 1.047 (2) |
| C8—C11 | 1.4010 (18) | H24—C13 | 1.119 (2) |
| C9—N5 | 1.451 (2) | H25—C14 | 1.1036 (19) |
| C9—C7 | 1.519 (3) | H26—O1 | 0.989 (2) |
| C9—H20 | 1.116 (3) | H26—Cl38i | 2.1733 (10) |
| C9—H21 | 1.121 (3) | H27—C16 | 1.085 (3) |
| C10—O2 | 1.3741 (17) | H28—C16 | 1.125 (3) |
| C10—C8 | 1.3914 (18) | H29—C17 | 1.060 (3) |
| C10—C13 | 1.391 (2) | H30—C17 | 1.115 (3) |
| C11—C8 | 1.4010 (18) | H31—C17 | 1.100 (3) |
| C11—C12 | 1.3917 (18) | H32—C18 | 1.142 (3) |
| C11—H22 | 1.0811 (19) | H33—C18 | 1.067 (3) |
| C12—O3 | 1.3814 (19) | H34—C18 | 1.089 (3) |
| C12—C11 | 1.3917 (18) | H35—N6 | 1.072 (3) |
| C12—C14 | 1.383 (2) | H35—Cl38ii | 2.1656 (10) |
| C13—C10 | 1.391 (2) | H36—N6 | 1.070 (2) |
| C13—C14 | 1.378 (2) | H36—Cl38iii | 2.0529 (10) |
| C13—H24 | 1.119 (2) | H37—N6 | 1.015 (3) |
| C14—C12 | 1.383 (2) | Cl38—H26i | 2.1733 (10) |
| C14—C13 | 1.378 (2) | Cl38—H35ii | 2.1656 (10) |
| C14—H25 | 1.1036 (19) | Cl38—H36iv | 2.0529 (10) |
| C7—O1—H26 | 104.5 (2) | C12—C11—H22 | 122.58 (19) |
| C10—O2—C17 | 118.16 (15) | O3—C12—C11 | 123.4 (2) |
| C12—O3—C18 | 118.2 (2) | O3—C12—C14 | 116.5 (2) |
| C9—N5—C15 | 123.69 (18) | C11—C12—C14 | 120.08 (12) |
| C9—N5—H23 | 117.7 (2) | C10—C13—C14 | 120.27 (14) |
| C15—N5—H23 | 117.5 (2) | C10—C13—H24 | 120.83 (18) |
| C16—N6—H35 | 108.7 (2) | C14—C13—H24 | 118.9 (2) |
| C16—N6—H36 | 109.0 (2) | C12—C14—C13 | 120.11 (13) |
| H35—N6—H36 | 104.9 (2) | C12—C14—H25 | 119.3 (2) |
| C16—N6—H37 | 111.8 (3) | C13—C14—H25 | 120.6 (2) |
| H35—N6—H37 | 111.9 (2) | O4—C15—N5 | 124.03 (18) |
| H36—N6—H37 | 110.3 (2) | O4—C15—C16 | 120.44 (17) |
| O1—C7—C8 | 111.60 (16) | N5—C15—C16 | 115.28 (18) |
| O1—C7—C9 | 107.8 (2) | N6—C16—C15 | 110.65 (17) |
| C8—C7—C9 | 111.2 (2) | N6—C16—H27 | 107.5 (3) |
| O1—C7—H19 | 113.5 (2) | C15—C16—H27 | 113.1 (3) |
| C8—C7—H19 | 106.94 (18) | N6—C16—H28 | 109.3 (3) |
| C9—C7—H19 | 105.68 (19) | C15—C16—H28 | 109.6 (3) |
| C7—C8—C10 | 120.30 (12) | H27—C16—H28 | 106.7 (2) |
| C7—C8—C11 | 120.84 (13) | O2—C17—H29 | 112.0 (2) |
| C10—C8—C11 | 118.84 (11) | O2—C17—H30 | 111.8 (3) |
| N5—C9—C7 | 112.7 (2) | H29—C17—H30 | 111.3 (3) |
| N5—C9—H20 | 107.4 (2) | O2—C17—H31 | 112.3 (3) |
| C7—C9—H20 | 109.9 (2) | H29—C17—H31 | 106.1 (3) |
| N5—C9—H21 | 109.7 (2) | H30—C17—H31 | 102.9 (2) |
| C7—C9—H21 | 110.8 (2) | O3—C18—H32 | 109.9 (3) |
| H20—C9—H21 | 106.0 (2) | O3—C18—H33 | 107.7 (3) |
| O2—C10—C8 | 115.41 (11) | H32—C18—H33 | 108.8 (3) |
| O2—C10—C13 | 124.17 (13) | O3—C18—H34 | 111.0 (3) |
| C8—C10—C13 | 120.42 (12) | H32—C18—H34 | 106.7 (2) |
| C8—C11—C12 | 120.22 (13) | H33—C18—H34 | 112.8 (3) |
| C8—C11—H22 | 117.19 (18) |
| Symmetry codes: (i) −x+1, −y+1, −z+1; (ii) −x+2, −y+2, −z+1; (iii) x+1, y+1, z; (iv) x−1, y−1, z. |
| C12H19ClN2O4 | c = 32.95150 Å |
| Mr = 290.75 | β = 87.25° |
| Monoclinic, P21/c | V = 1406.93 Å3 |
| a = 5.17880 Å | Z = 4 |
| b = 8.25410 Å |
| x | y | z | Biso*/Beq | ||
| O1 | 1.08609 | 0.75160 | 0.57288 | ||
| O2 | 0.66329 | 0.90588 | 0.67624 | ||
| O3 | 1.32010 | 0.37844 | 0.68884 | ||
| O4 | 1.49956 | 1.03863 | 0.54807 | ||
| N5 | 1.10117 | 1.10119 | 0.57712 | ||
| N6 | 1.46798 | 1.26472 | 0.48858 | ||
| C7 | 0.97486 | 0.83368 | 0.60772 | ||
| C8 | 0.98777 | 0.73521 | 0.64646 | ||
| C9 | 1.11992 | 0.99460 | 0.61196 | ||
| C10 | 0.82320 | 0.77413 | 0.68029 | ||
| C11 | 1.15908 | 0.60486 | 0.64894 | ||
| C12 | 1.16333 | 0.51097 | 0.68431 | ||
| C13 | 0.82942 | 0.68120 | 0.71575 | ||
| C14 | 0.99768 | 0.55011 | 0.71764 | ||
| C15 | 1.28930 | 1.11376 | 0.54791 | ||
| C16 | 1.23005 | 1.22586 | 0.51307 | ||
| C17 | 0.47051 | 0.93180 | 0.70822 | ||
| C18 | 1.50565 | 0.34561 | 0.65626 | ||
| H19 | 0.76985 | 0.86202 | 0.60297 | ||
| H20 | 1.32549 | 0.96936 | 0.61586 | ||
| H21 | 1.04032 | 1.05789 | 0.63909 | ||
| H22 | 1.28492 | 0.57675 | 0.62242 | ||
| H23 | 0.93892 | 1.17104 | 0.57467 | ||
| H24 | 0.70477 | 0.71120 | 0.74223 | ||
| H25 | 1.00097 | 0.47574 | 0.74497 | ||
| H26 | 0.98954 | 0.64869 | 0.56984 | ||
| H27 | 1.09480 | 1.16753 | 0.49287 | ||
| H28 | 1.13894 | 1.33833 | 0.52442 | ||
| H29 | 0.35462 | 1.03463 | 0.69851 | ||
| H30 | 0.34623 | 0.82426 | 0.71243 | ||
| H31 | 0.55766 | 0.96164 | 0.73709 | ||
| H32 | 1.41042 | 0.31642 | 0.62801 | ||
| H33 | 1.61746 | 0.24085 | 0.66595 | ||
| H34 | 1.63568 | 0.44937 | 0.65061 | ||
| H35 | 1.60707 | 1.30873 | 0.50782 | ||
| H36 | 1.42630 | 1.35768 | 0.46795 | ||
| H37 | 1.53415 | 1.16293 | 0.47244 | ||
| Cl38 | 1.26072 | 1.55497 | 0.44040 |
| D—H···A | D—H | H···A | D···A | D—H···A |
| N6—H37···O4 | 1.043 | 1.807 | 2.781 | 153.7 |
| N6—H36···Cl38 | 1.054 | 2.070 | 3.094 | 163.2 |
| N6—H35···Cl38 | 1.047 | 2.181 | 3.159 | 154.6 |
| O1—H26···Cl38 | 0.993 | 2.159 | 3.146 | 172.1 |
| N5—H23···Cl38 | 1.025 | 2.545 | 3.465 | 149.0 |
| C16—H28···Cl38 | 1.099 | 2.485 | 3.422 | 142.4 |
| C11—H22···O1 | 1.090 | 2.443 | 2.825 | 98.9 |
| C13—H24···O3 | 1.089 | 2.656 | 3.592 | 143.7 |
| C17—H31···O3 | 1.100 | 2.642 | 3.637 | 150.3 |
| D—H···A | D—H | H···A | D···A | D—H···A | Mulliken overlap | H-bond energy |
| N6—H37···O4 | 1.043 | 1.807 | 2.781 | 153.7 | 0.063 | 5.8 |
| N6—H36···Cl38 | 1.054 | 2.070 | 3.094 | 163.2 | 0.088 | |
| N6—H35···Cl38 | 1.047 | 2.181 | 3.159 | 154.6 | 0.077 | |
| O1—H26···Cl38 | 0.993 | 2.159 | 3.146 | 172.1 | 0.064 | 35.6 |
| N5—H23···Cl38 | 1.025 | 2.545 | 3.465 | 149.0 | 0.036 | |
| C16—H28···Cl38 | 1.099 | 2.485 | 3.422 | 142.4 | 0.032 | |
| C11—H22···O1 | 1.090 | 2.443 | 2.825 | 98.9 | 0.017 | |
| C13—H24···O3 | 1.089 | 2.656 | 3.592 | 143.7 | 0.012 | |
| C17—H31···O3 | 1.100 | 2.642 | 3.637 | 150.3 | 0.010 |
Acknowledgements
Use of the Advanced Photon Source at Argonne National Laboratory was supported by the US Department of Energy, Office of Science, Office of Basic Energy Sciences, under Contract No. DE-AC02–06CH11357. We thank Saul Lapidus for his assistance in the data collection. We also thank the ICDD team – Megan Rost, Steve Trimble, and Dave Bohnenberger – for their contribution to research, sample preparation, and in-house XRD data collection and verification.
Funding information
Funding for this research was provided by: International Centre for Diffraction Data (grant No. 09-03).
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