Jmol – a paradigm shift in crystallographic visualization
[Figure 19]
[Figure 19]

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Figure 19
Electron density as a cloud for 3hyd (Ivanova et al., 2009BB15; CCP4 map file http://eds.bmc.uu.se/cgi-bin/eds/uusfs?pdbCode=3hyd ). Each point represents one data point in the map file, with opacity scaled relative to calculated electron density. It is clear that something is there, but what that might be is not at all clear. Jmol command: load =3HYD; boundbox on; background white; isosurface boundbox color density cutoff 0 "=3HYD" colorScheme translucent BW.










The script commands and data files used by Jmol are available from Crystallography Journals Online as supplementary material for this article.

Figure 19
Electron density as a cloud for 3hyd (Ivanova et al., 2009BB15; CCP4 map file http://eds.bmc.uu.se/cgi-bin/eds/uusfs?pdbCode=3hyd ). Each point represents one data point in the map file, with opacity scaled relative to calculated electron density. It is clear that something is there, but what that might be is not at all clear. Jmol command: load =3HYD; boundbox on; background white; isosurface boundbox color density cutoff 0 "=3HYD" colorScheme translucent BW.

Journal logo JOURNAL OF
APPLIED
CRYSTALLOGRAPHY
ISSN: 1600-5767
Volume 43| Part 5| September 2010| Pages 1250-1260
doi:10.1107/S0021889810030256
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