Figure 11
(a) vdW volume and (b) vdW surface-area calculations at different resolutions for a cytochrome C complex (PDB entry 6s8y) for different programs. Connecting lines have been added for visual clarity. MoloVol (red diamonds) and 3V (green triangles) perform similarly, while PoreBlazer (blue spheres) deviates significantly and does not converge in the volume calculation. Smaller grid-resolution values could not be tested with PoreBlazer owing to the program crashing. |