Figure 3
Ab initio model-derived search-model ensembles solve more coiled-coil targets than either single structures or ideal helices. (a) Overall successes with a single run of ensemble (green), single-structure (blue) or ideal polyalanine helix (purple) search models. A single structure, PDB entry 3h00
, solved with ideal helices that did not solve with a single run of ab initio prediction-derived search models. (b) Detailed breakdown of targets solved with ensembles, single structures and/or polyalanine helices. Red triangles, failures; filled blue circles, solved with each search model (ensemble, single structure and helices); empty blue circles, solved with one or more of the above; blue circle with a cross, only solved with the single-structure run (PDB entry 4dzk
); purple circles, solved with a re-run of the ensemble (PDB entries 1mi7
, 2bez
, 2q5u
, 2zzo
, 3h00
, 3h7z
, 3tyy
, 3u1a
and 3u1c
); purple square, manual inspection indicated success (PDB entries 3bas
and 3cvf
). |