Figure 9
Comparison of bendable and non-bendable substrates. Co-crystallized papaverine and heme molecules with CYP105D18 are shown as yellow and orange sticks. Each potential substrate after the docking calculation was represented with sticks with different color codes. The distances between the water molecules interacting with heme in CYP105D18 and nitrogen are indicated in each figure. Docking experiments were performed using the Lamarckian genetic algorithm (LGA) method in Autodock Vina (Trott & Olson, 2010). |