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Figure 2
Pipeline for Amber-based refinement (with Phenix-based refinement included for the purpose of comparison). (a) Initial models are obtained directly from the deposited crystallographic structures (the D-set). (b) Initial models are from crystallographic structures subjected to a short MD run, i.e. intentionally `scrambled' (the S-set).

IUCrJ
Volume 9| Part 1| January 2022| Pages 114-133
ISSN: 2052-2525
https://doi.org/10.1107/S2052252521011891