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IUCrJ
Volume 11| Part 4| July 2024| Pages 434-435
ISSN: 2052-2525

Chemistry and crystal engineering

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aCentre for Supramolecular Chemistry Research, Department of Chemistry, University of Cape Town, Rondebosch 7701, South Africa
*Correspondence e-mail: susan.bourne@uct.ac.za

The IUCrJ theme of Chemistry and crystal engineering covers a broad range of topics and this is reflected in the articles published in IUCrJ. In 2022, Desiraju suggested that `the Holy Grail of crystal engineering is to answer the question: Given the molecular structure of a compound what are all the possible crystal structures?' (Desiraju, 2022[Desiraju, G. R. (2022). IUCrJ, 9, 329-330.]). It is interesting and instructive therefore to reflect on advances made towards this goal in recent years. While there is still a focus in crystal engineering to deepen our understanding of the influence of intermolecular interactions on crystal packing, increasingly the focus has moved to practical applications such as devices and materials with useful physical and chemical properties (Braga, 2023[Braga, D. (2023). Chem. Commun. 59, 14052-14062.]; Xiong et al., 2024[Xiong, Y.-A., Duan, S.-S., Hu, H.-H., Yao, J., Pan, Q., Sha, T.-T., Wei, X., Ji, H.-R., Wu, J. & You, Y. (2024). Nat. Commun. 15, 4470.]; Kasuya et al., 2024[Kasuya, K., Oketani, R., Matsuda, S., Sato, H., Ishiwari, F., Saeki, A. & Hisaki, I. (2024). Angew. Chem. Int. Ed. 63, e202404700.]; Xu et al., 2024[Xu, W., Huang, G., Yang, Z., Deng, Z., Zhou, C., Li, J.-A., Li, M.-D., Hu, T., Tang, B. Z. & Phillips, D. L. (2024). Nat. Commun. 15, 2561.]). Recent articles in the journal highlight developments both in methodology and techniques as well as a diverse range of classes of compounds being studied and of problems being tackled.

Studies on the nature of non-covalent interactions are highly topical (Biot & Bonifazi, 2020[Biot, N. & Bonifazi, D. (2020). Chem. Eur. J. 26, 2904-2913.]; Rajapaksha et al., 2023[Rajapaksha, H., Augustine, L. J., Mason, S. E. & Forbes, T. Z. (2023). Angew. Chem. Int. Ed. 62, e202305073.]) and are well represented in recent publications in the journal. These include the nature of π-hole interactions between iodide anions and quinoid rings which have been shown to be predominantly electrostatic (Milašinović et al., 2023[Milašinović, V., Vuković, V., Krawczuk, A., Molčanov, K., Hennig, C. & Bodensteiner, M. (2023). IUCrJ, 10, 156-163.]) while Carroll and co-workers used a crystalline sponge to isolate and characterize a family of bi­aryl alcohol guest molecules, showing that the orientation and molecular conformation adopted by the guest molecules is controlled by the intermolecular interactions (hydrogen-bonding, halogen-bonding and/or aromatic interactions) available at the guest exchange site (Carroll et al., 2023[Carroll, R. C., Harrowven, D. C., Pearce, J. E. & Coles, S. J. (2023). IUCrJ, 10, 497-508.]).

Interesting questions remain, such as how far can a packing motif change while still being considered the same? This is the subject of a re-evaluation of the definition of isostructurality (Bombicz, 2024[Bombicz, P. (2024). IUCrJ, 11, 3-6.]) which argues that consideration of symmetry and supramolecular interactions and their influence on the resulting crystal structure is required. The concept of similarity and isostructurality is key to the study of polymorphism (Subanbekova et al., 2024[Subanbekova, A., Bezrukov, A. A., Bon, V., Nikolayenko, V. I., Koupepidou, K., Sensharma, D., Jan Nikkhah, S., Wang, S.-Q., Kaskel, S. & Vandichel, M. (2024). ACS Appl. Mater. Interfaces. In the press.]; Jeziorna et al., 2023[Jeziorna, A., Paluch, P., Zając, J., Dolot, R. & Dudek, M. K. (2023). Cryst. Growth Des. 23, 5998-6010.]) and even of the disappearance and reappearance of polymorphs (Sacchi et al., 2024[Sacchi, P., Wright, S. E., Neoptolemou, P., Lampronti, G. I., Rajagopalan, A. K., Kras, W., Evans, C. L., Hodgkinson, P. & Cruz-Cabeza, A. J. (2024). Proc. Natl Acad. Sci. USA, 121, e2319127121.]). A recent example of the value of such considerations is the study of the mechanism and kinetics of transforming polymorph C of the pharmaceutical ingredient ibrutinib to its halogen benzene solvates using a flow-through capillary mounted directly on a powder X-ray diffractometer (Jirát et al., 2023[Jirát, J., Rohlíček, J., Kaminský, J., Jirkal, T., Ridvan, L., Skořepová, E., Zvoníček, V., Dušek, M. & Šoóš, M. (2023). IUCrJ, 10, 210-219.]). Four different transformation mechanisms were determined despite the isostructurality of three of the four solvated crystal structures. The influence of environmental factors on molecular packing is another area of ongoing interest. The increasing availability of diamond-anvil cells has promoted an interest in the effect of pressure on molecular packing. High pressure promotes some interactions over others and can force the molecules to adopt a particular conformation (Sacharczuk et al., 2024[Sacharczuk, N., Olejniczak, A., Bujak, M., Dziubek, K. F., Katrusiak, A. & Podsiadło, M. (2024). IUCrJ, 11, 57-61.]) while pressure changes can induce migration of a proton to allow interconversion between a cocrystal form to an ionic salt (Patyk-Kaźmierczak et al., 2024[Patyk-Kaźmierczak, E., Izquierdo-Ruiz, F., Lobato, A., Kaźmierczak, M., Moszczyńska, I., Olejniczak, A. & Recio, J. M. (2024). IUCrJ, 11, 168-181.]).

Crystallography may be said to have reached a mature phase as a science but new techniques and computational approaches are essential to allow researchers to tackle ever more complex problems. Recent developments in quantum crystallography hold great promise for improving the accuracy of key structural parameters. For example, Hirshfeld atom refinement (HAR) uses aspherical structure factors obtained from calculation to produce more accurate structural information such as more accurate hydrogen atom positions even in cases where the hydrogens are close to heavy elements (Capelli et al., 2014[Capelli, S. C., Bürgi, H.-B., Dittrich, B., Grabowsky, S. & Jayatilaka, D. (2014). IUCrJ, 1, 361-379.]; Woińska et al., 2023[Woińska, M., Pawlędzio, S., Chodkiewicz, M. L. & Woźniak, K. (2023). J. Phys. Chem. A, 127, 3020-3035.]). Zwolenik et al. (2024[Zwolenik, A., Tchoń, D. & Makal, A. (2024). IUCrJ, 11, 519-527.]) applied HAR to a molecular structure at high pressure and compared the result with an analysis of the same structure measured over a temperature range of 90 to 390 K.

Developments in machine learning and artificial intelligence will have an increasing impact on the nature of the questions that can be addressed using crystallography (Ekeberg, 2024[Ekeberg, T. (2024). J. Appl. Cryst. 57, 1-2.]; Billinge & Proffen, 2024[Billinge, S. J. L. & Proffen, Th. (2024). Acta Cryst. A80, 139-145.]; Zhu et al., 2024[Zhu, Z., Zhang, Y., Wang, Z., Tang, W., Wang, J. & Gong, J. (2024). Cryst. Growth Des. 24, 4245-4270.]). An intriguing example is recent work by Takiguchi et al. who devised a deep learning model to determine which of 20000 metal complexes extracted from the Cambridge Structural Database (CSD) are single-molecule magnets (SMM) with 70% accuracy (Takiguchi et al., 2024[Takiguchi, Y., Nakane, D. & Akitsu, T. (2024). IUCrJ, 11, 182-189.]). The latter article highlights the enormous value the CSD (Ferrence et al., 2023[Ferrence, G. M., Tovee, C. A., Holgate, S. J. W., Johnson, N. T., Lightfoot, M. P., Nowakowska-Orzechowska, K. L. & Ward, S. C. (2023). IUCrJ, 10, 6-15.]) and other databases offer so it is encouraging to see the work being done by CODATA to ensure the interoperability of crystallographic data within the FAIR principles (findable, accessible, interoperable and reusable) (Brink et al., 2024[Brink, A., Bruno, I., Helliwell, J. R. & McMahon, B. (2024). IUCrJ, 11, 9-15.]).

In conclusion, recent articles in the journal are evidence that crystal engineering concepts are well embedded in many aspects of chemical crystallography. Further advances in these themes are to be expected and will be welcomed in IUCrJ.

References

First citationBillinge, S. J. L. & Proffen, Th. (2024). Acta Cryst. A80, 139–145.  Web of Science CrossRef IUCr Journals Google Scholar
First citationBiot, N. & Bonifazi, D. (2020). Chem. Eur. J. 26, 2904–2913.  Web of Science CSD CrossRef CAS PubMed Google Scholar
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First citationKasuya, K., Oketani, R., Matsuda, S., Sato, H., Ishiwari, F., Saeki, A. & Hisaki, I. (2024). Angew. Chem. Int. Ed. 63, e202404700.  Web of Science CSD CrossRef Google Scholar
First citationMilašinović, V., Vuković, V., Krawczuk, A., Molčanov, K., Hennig, C. & Bodensteiner, M. (2023). IUCrJ, 10, 156–163.  Web of Science CSD CrossRef PubMed IUCr Journals Google Scholar
First citationPatyk-Kaźmierczak, E., Izquierdo-Ruiz, F., Lobato, A., Kaźmierczak, M., Moszczyńska, I., Olejniczak, A. & Recio, J. M. (2024). IUCrJ, 11, 168–181.  Web of Science CSD CrossRef PubMed IUCr Journals Google Scholar
First citationRajapaksha, H., Augustine, L. J., Mason, S. E. & Forbes, T. Z. (2023). Angew. Chem. Int. Ed. 62, e202305073.  Web of Science CrossRef Google Scholar
First citationSacchi, P., Wright, S. E., Neoptolemou, P., Lampronti, G. I., Rajagopalan, A. K., Kras, W., Evans, C. L., Hodgkinson, P. & Cruz-Cabeza, A. J. (2024). Proc. Natl Acad. Sci. USA, 121, e2319127121.  Web of Science CrossRef PubMed Google Scholar
First citationSacharczuk, N., Olejniczak, A., Bujak, M., Dziubek, K. F., Katrusiak, A. & Podsiadło, M. (2024). IUCrJ, 11, 57–61.  Web of Science CSD CrossRef CAS PubMed IUCr Journals Google Scholar
First citationSubanbekova, A., Bezrukov, A. A., Bon, V., Nikolayenko, V. I., Koupepidou, K., Sensharma, D., Jan Nikkhah, S., Wang, S.-Q., Kaskel, S. & Vandichel, M. (2024). ACS Appl. Mater. Interfaces. In the press.  Google Scholar
First citationTakiguchi, Y., Nakane, D. & Akitsu, T. (2024). IUCrJ, 11, 182–189.  Web of Science CrossRef CAS PubMed IUCr Journals Google Scholar
First citationWoińska, M., Pawlędzio, S., Chodkiewicz, M. L. & Woźniak, K. (2023). J. Phys. Chem. A, 127, 3020–3035.  Web of Science PubMed Google Scholar
First citationXiong, Y.-A., Duan, S.-S., Hu, H.-H., Yao, J., Pan, Q., Sha, T.-T., Wei, X., Ji, H.-R., Wu, J. & You, Y. (2024). Nat. Commun. 15, 4470.  CSD CrossRef PubMed Google Scholar
First citationXu, W., Huang, G., Yang, Z., Deng, Z., Zhou, C., Li, J.-A., Li, M.-D., Hu, T., Tang, B. Z. & Phillips, D. L. (2024). Nat. Commun. 15, 2561.  Web of Science CrossRef PubMed Google Scholar
First citationZhu, Z., Zhang, Y., Wang, Z., Tang, W., Wang, J. & Gong, J. (2024). Cryst. Growth Des. 24, 4245–4270.  Web of Science CrossRef CAS Google Scholar
First citationZwolenik, A., Tchoń, D. & Makal, A. (2024). IUCrJ, 11, 519–527.  Web of Science CSD CrossRef PubMed IUCr Journals Google Scholar

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IUCrJ
Volume 11| Part 4| July 2024| Pages 434-435
ISSN: 2052-2525