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Figure 5
Example of a protein structure with an excess of water molecules: the botulism neurotoxin light chain (PDB entry 7kyf) contains 19 water molecules modeled at full occupancy, but all of these water molecules are located in negative regions of the FoFc map, suggesting that their placement was not based on the available diffraction data. The 2FoFc map (blue) is contoured at the 1.5σ level, while the FoFc map (red) is shown at −3.0σ.

IUCrJ
Volume 11| Part 6| November 2024| Pages 966-976
ISSN: 2052-2525