research papers\(\def\hfill{\hskip 5em}\def\hfil{\hskip 3em}\def\eqno#1{\hfil {#1}}\)

IUCrJ
Volume 12| Part 3| May 2025| Pages 384-392
ISSN: 2052-2525

Accurate temperature dependence of structure factors of L-alanine and taurine for quantum crystallography

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aDepartment of Physics, Institute of Pure and Applied Sciences and Tsukuba Research Center for Energy Materials Science, University of Tsukuba, Tsukuba 305-8571, Japan
*Correspondence e-mail: nishibori.eiji.ga@u.tsukuba.ac.jp

Edited by K. Wozniak, Warsaw University, Poland (Received 3 September 2024; accepted 23 March 2025; online 24 April 2025)

This article is part of a collection of articles on Quantum Crystallography, and commemorates the 100th anniversary of the development of Quantum Mechanics.

Multi-temperature high-quality structure factors of L-alanine and taurine were re-measured at the SPring-8 BL02B1 beamline for method development in quantum crystallography. The quality of the data was evaluated by comparison with previous studies. In the case of taurine, we found that the data quality was highly affected by small amounts of twinning. Residual electron density around the sulfur atoms observed in a previous study [Hibbs et al. (2003). Chem. A Eur. J. 9, 1075–1084] disappeared with the re-measured data. X-ray wavefunction refinements were carried out on these data. The difference electron density between the X-ray constrained wavefunction (XCW) results and the Hartree–Fock charge density showed a positive difference electron density around the nucleus and a negative difference electron density between the bonds. These features were consistent with those reported [Hupf et al. (2023). J. Chem. Phys. 158, 124103]. It was found that the deformation density around the nucleus and between bonds due to electron correlations and electronic polarization could be confirmed by the XCW method using the present structure factors.

1. Introduction

Quantum crystallography (QCr) (Grabowsky et al., 2017[Grabowsky, S., Genoni, A. & Bürgi, H.-B. (2017). Chem. Sci. 8, 4159-4176.]) studies based on accurate diffraction data have been carried out for decades (Koritsánszky & Coppens, 2001[Koritsánszky, T. S. & Coppens, P. (2001). Chem. Rev. 101, 1583-1628.]). The development of methods such as Hirshfeld atom refinement (HAR) (Capelli et al., 2014[Capelli, S. C., Bürgi, H.-B., Dittrich, B., Grabowsky, S. & Jayatilaka, D. (2014). IUCrJ, 1, 361-379.]) and the X-ray constrained wavefunction (XCW) method (Jayatilaka, 1998[Jayatilaka, D. (1998). Phys. Rev. Lett. 80, 798-801.]; Jayatilaka & Dittrich, 2008[Jayatilaka, D. & Dittrich, B. (2008). Acta Cryst. A64, 383-393.]; Dittrich et al., 2012[Dittrich, B., Sze, E., Holstein, J. J., Hübschle, C. B. & Jayatilaka, D. (2012). Acta Cryst. A68, 435-442.]; Grabowsky et al., 2012[Grabowsky, S., Luger, P., Buschmann, J., Schneider, T., Schirmeister, T., Sobolev, A. N. & Jayatilaka, D. (2012). Angew. Chem. Int. Ed. 51, 6776-6779.]) requires the most accurate experimental data. Such data have ultimately enabled the recent advances in QCr. One of the main goals of QCr is to improve theoretical computations based on quantum mechanics by accurate experimental measurements. Recent QCr studies have used accurate diffraction data to reveal the effects of electron correlation in chemical bonds, electron polarization in molecules (Genoni et al., 2017[Genoni, A., Dos Santos, L. H. R., Meyer, B. & Macchi, P. (2017). IUCrJ, 4, 136-146.]; Hupf et al., 2023[Hupf, E., Kleemiss, F., Borrmann, T., Pal, R., Krzeszczakowska, J. M., Woińska, M., Jayatilaka, D., Genoni, A. & Grabowsky, S. (2023). J. Chem. Phys. 158, 124103.]) and van der Waals interactions (Kasai et al., 2018[Kasai, H., Tolborg, K., Sist, M., Zhang, J., Hathwar, V. R., Filsø, M. O., Cenedese, S., Sugimoto, K., Overgaard, J., Nishibori, E. & Iversen, B. B. (2018). Nat. Mater. 17, 249-252.]) in materials. High-quality and high-resolution experimental structure factors have always been required for such developments and improvements of QCr methodology. There are a limited number of high-quality datasets available for method developments. Samples for method development are often limited to containing first- and second-row elements of the periodic table such as L-alanine and urea (Hupf et al., 2023[Hupf, E., Kleemiss, F., Borrmann, T., Pal, R., Krzeszczakowska, J. M., Woińska, M., Jayatilaka, D., Genoni, A. & Grabowsky, S. (2023). J. Chem. Phys. 158, 124103.]) at a single measurement temperature. The structure factors of L-alanine by Destro et al. (1988[Destro, R., Marsh, R. E. & Bianchi, R. (1988). J. Phys. Chem. 92, 966-973.]) have been extensively used for confirmation and method development in QCr. The effects of electron correlation in chemical bonds and electronic polarization of L-alanine in the crystal have been revealed by the XCW analysis (Hupf et al., 2023[Hupf, E., Kleemiss, F., Borrmann, T., Pal, R., Krzeszczakowska, J. M., Woińska, M., Jayatilaka, D., Genoni, A. & Grabowsky, S. (2023). J. Chem. Phys. 158, 124103.]). These data were also used for charge density studies by multipole modeling (MM) (Hansen & Coppens, 1978[Hansen, N. K. & Coppens, P. (1978). Acta Cryst. A34, 909-921.]), HAR, molecule-in-cluster geometry optimization and restraint validation (Dittrich et al., 2020[Dittrich, B., Chan, S., Wiggin, S., Stevens, J. S. & Pidcock, E. (2020). CrystEngComm, 22, 7420-7431.]), and normal mode refinement (Hoser & Madsen, 2016[Hoser, A. A. & Madsen, A. Ø. (2016). Acta Cryst. A72, 206-214.]). Taurine, a sulfur-containing zwitterion, has recently attracted attention due to its anti-aging effects (Singh et al., 2023[Singh, P., Gollapalli, K., Mangiola, S., Schranner, D., Yusuf, M. A., Chamoli, M., Shi, S. L., Bastos, B. L., Nair, T., Riermeier, A., Vayndorf, E. M., Wu, J. Z., Nilakhe, A., Nguyen, C. Q., Muir, M., Kiflezghi, M. G., Foulger, A., Junker, A., Devine, J., Sharan, K., Chinta, S. J., Rajput, S., Rane, A., Baumert, P., Schönfelder, M., Iavarone, F., di Lorenzo, G., Kumari, S., Gupta, A., Sarkar, R., Khyriem, C., Chawla, A. S., Sharma, A., Sarper, N., Chattopadhyay, N., Biswal, B. K., Settembre, C., Nagarajan, P., Targoff, K. L., Picard, M., Gupta, S., Velagapudi, V., Papenfuss, A. T., Kaya, A., Ferreira, M. G., Kennedy, B. K., Andersen, J. K., Lithgow, G. J., Ali, A. M., Mukhopadhyay, A., Palotie, A., Kastenmüller, G., Kaeberlein, M., Wackerhage, H., Pal, B. & Yadav, V. K. (2023). Science, 380, eabn9257.]). Hibbs et al. (2003[Hibbs, D. E., Austin-Woods, C. J., Platts, J. A., Overgaard, J. & Turner, P. (2003). Chem. A Eur. J. 9, 1075-1084.]) reported the MM charge density of taurine (Hibbs et al., 2003[Hibbs, D. E., Austin-Woods, C. J., Platts, J. A., Overgaard, J. & Turner, P. (2003). Chem. A Eur. J. 9, 1075-1084.]). They found that the largest residual electron density was in the region close to the sulfur atom. This residual density remained even after QCr MOON refinement, which is a molecular orbital occupation number refinement (Waller et al., 2006[Waller, M. P., Howard, S. T., Platts, J. A., Piltz, R. O., Willock, D. J. & Hibbs, D. E. (2006). Chem. A Eur. J. 12, 7603-7614.]).

Changing the temperature is known to affect the structure as well as the charge density. Increasing temperature smears (Hirshfeld, 1976[Hirshfeld, F. L. (1976). Acta Cryst. A32, 239-244.]) the charge density of materials. Therefore, QCr studies are usually carried out using low-temperature diffraction data measured at less than 100 K to reduce thermal effects. Recent progress in dynamical QCr to treat phonon dispersion can, in principle, quantitatively evaluate thermal motion in crystallography (Hoser & Madsen, 2016[Hoser, A. A. & Madsen, A. Ø. (2016). Acta Cryst. A72, 206-214.]). However, there are very few good-quality charge-density datasets available that have been measured at different temperatures for dynamical QCr.

Advances in X-ray sources, detectors as well as software allow us to routinely measure diffraction data of a quality suitable for hydrogen position determination by HAR and chemical bonding studies of normal σ bonds using state-of-the-art laboratory diffractometers. However, to reveal small effects such as electron correlation in chemical bonds, highly accurate diffraction data with sufficient counting statistics and high resolution in reciprocal space with d > 0.3 Å resolution are required. Over the past 15 years, we have developed and perfected measurement techniques for accurate high-resolution single-crystal data with high reciprocal resolution at the SPring-8 BL02B1 beamline (Sugimoto et al., 2010[Sugimoto, K., Ohsumi, H., Aoyagi, S., Nishibori, E., Moriyoshi, C., Kuroiwa, Y., Sawa, H. & Takata, M. (2010). AIP Conf. Proc. 1234, 887-891.]). The quality of the charge density study of CoSb3 (skutterudite) using the previous imaging plate detector has been reported, comparing diffraction data measured at other facilities and with other diffractometers (Schmøkel et al., 2013[Schmøkel, M. S., Bjerg, L., Larsen, F. K., Overgaard, J., Cenedese, S., Christensen, M., Madsen, G. K. H., Gatti, C., Nishibori, E., Sugimoto, K., Takata, M. & Iversen, B. B. (2013). Acta Cryst. A69, 570-582.]). Other examples include the high-quality charge density studies of TiS2 (Kasai et al., 2018[Kasai, H., Tolborg, K., Sist, M., Zhang, J., Hathwar, V. R., Filsø, M. O., Cenedese, S., Sugimoto, K., Overgaard, J., Nishibori, E. & Iversen, B. B. (2018). Nat. Mater. 17, 249-252.]), of a Dy-containing single molecular magnet (Gao et al., 2020[Gao, C., Genoni, A., Gao, S., Jiang, S., Soncini, A. & Overgaard, J. (2020). Nat. Chem. 12, 213-219.]) and a Ti-containing Mott insulator (Kitou et al., 2020[Kitou, S., Manjo, T., Katayama, N., Shishidou, T., Arima, T.-H., Taguchi, Y., Tokura, Y., Nakamura, T., Yokoyama, T., Sugimoto, K. & Sawa, H. (2020). Phys. Rev. Res. 2, 033503.]). Since then, a CdTe PILATUS 3X detector has been installed at the BL02B1 beamline. The properties of such detectors have been carefully investigated by charge density studies (Krause et al., 2020[Krause, L., Tolborg, K., Grønbech, T. B. E., Sugimoto, K., Iversen, B. B. & Overgaard, J. (2020). J. Appl. Cryst. 53, 635-649.]) and several high-quality charge density studies have already been reported using this detector type (Kitou et al., 2023[Kitou, S., Gen, M., Nakamura, Y., Sugimoto, K., Tokunaga, Y., Ishiwata, S. & Arima, T.-H. (2023). Adv. Sci. 10, 2302839.]; Vosegaard et al., 2022[Vosegaard, E. S., Thomsen, M. K., Krause, L., Grønbech, T. B. E., Mamakhel, A., Takahashi, S., Nishibori, E. & Iversen, B. B. (2022). Chem. A Eur. J. 28, e202201295.]). In the present study, multi-temperature synchrotron single-crystal X-ray diffraction data of L-alanine and taurine were re-measured at the SPring-8 BL02B1 beamline with the CdTe detector. Data quality was evaluated using MM, HAR and XCW methods. In addition, theoretical structure factors of L-alanine and taurine were calculated using the program CRYSTAL14 (Dovesi et al., 2014[Dovesi, R., Orlando, R., Erba, A., Zicovich-Wilson, C. M., Civalleri, B., Casassa, S., Maschio, L., Ferrabone, M., De La Pierre, M., D'Arco, P., Noël, Y., Causà, M., Rérat, M. & Kirtman, B. (2014). Int. J. Quantum Chem. 114, 1287-1317.]). Theoretical structure factors were also analyzed by the XCW method for comparison.

2. Experiment and analysis

2.1. Sample preparation

Commercially available small crystals of L-alanine and taurine were purchased. Small crystals of L-alanine and taurine less than 200 µm in the longest dimension were selected and mounted on the top of a glass fiber with an ep­oxy resin. The quality of the sample was estimated by the measurement of single-crystal data using an XtaLAB mini at the University of Tsukuba. Several pre-selected samples were measured at the SPring-8 BL02B1 beamline. The best-quality sample was selected using the above procedures. The criteria of the sample quality were evaluated using the shape of the Bragg peaks in the high-angle region, the intensities of Bragg peaks, and the results of indexing and data reduction.

2.2. Multi-temperature synchrotron radiation single-crystal experiments

Multi-temperature synchrotron radiation single-crystal X-ray diffraction experiments were carried out at the SPring-8 BL02B1 beamline. The incident X-ray energy was 50 keV. The temperature of the samples was controlled by N2 and He gas-flow low-temperature devices. The temperature was calibrated using a thermocouple at the sample position before measurements. The temperature fluctuation was ±0.5 K. Preliminary measurements of 180° ω scans with fine slicing were performed for each sample to determine an optimal exposure time for the multi-temperature data. The exposure time of one frame for the pre-experiment was 0.1 s. The exposure times of the multi-temperature data for L-alanine and taurine were determined as 1.0 and 0.8 s from the pre-experiments. The data collection at each temperature typically consisted of 10800 fine-sliced frame images with two 2θ angle and three χ angle settings. The data collection for L-alanine at 100 K consisted of 18000 fine-sliced frame images with two 2θ angles and three χ angles addition to two ϕ angle settings. Using these preliminary measurements, we were able to avoid nonlinearity problems (Krause et al., 2020[Krause, L., Tolborg, K., Grønbech, T. B. E., Sugimoto, K., Iversen, B. B. & Overgaard, J. (2020). J. Appl. Cryst. 53, 635-649.]) in our multi-temperature data. The taurine diffraction data were measured two times since small amounts of twinning were detected in the data of the first measurement, which will be described later.

2.3. Data reduction and further analysis

The data were processed with the program CrysAlisPro (Rigaku, 2022[Rigaku (2022). CrysAlisPro. Version 171.42.90a. Rigaku Oxford Diffraction, Yarnton, Oxfordshire, UK.]). All tif files output from the PILATUS detector were converted to Esperanto format by CrysAlisPro. Then, peak hunting, unit-cell finding and data reduction were carried out for each temperature of data collection. Three datasets with the high 2θ angle setting for taurine were not used in the analysis due to the weak intensities of the diffraction peaks. The extracted data were merged using the SORTAV software (Blessing, 1997[Blessing, R. H. (1997). J. Appl. Cryst. 30, 421-426.]). Initial structure analysis was performed with the SHELX suite (Sheldrick, 2008[Sheldrick, G. M. (2008). Acta Cryst. A64, 112-122.]) and the graphical user interface of the Olex2 system (Dolomanov et al., 2009[Dolomanov, O. V., Bourhis, L. J., Gildea, R. J., Howard, J. A. K. & Puschmann, H. (2009). J. Appl. Cryst. 42, 339-341.]). The space group, initial atomic coordinates and anisotropic displacement parameters were determined in the process. Diffraction data were analyzed by MM, HAR and the XCW method using XD2016 (Volkov et al., 2016[Volkov, A., Macchi, P., Farrugia, L. J., Gatti, C., Mallinson, P. R. & Koritsanszky, T. (2016). XD2016 - A Computer Program Package for Multipole Refinement, Topological Analysis of Charge Densities and Evaluation of Intermolecular Energies from Experimental and Theoretical Structure Factors. University at Buffalo, State University of New York, New York, USA. https://www.chem.gla.ac.uk/~louis/xd-home/.]), ORCA (Neese, 2012[Neese, F. (2012). WIREs Comput. Mol. Sci. 2, 73-78.]) with Olex2, and Tonto (Jayatilaka & Grimwood, 2003[Jayatilaka, D. & Grimwood, D. J. (2003). Computational Science - ICCS 2003, Lecture Notes in Computer Science, Vol. 2660, edited by P. M. A. Sloot, D. Abramson, A. V. Bogdanov, Y. E. Gorbachev, J. J. Dongarra & A. Y. Zomaya, pp. 142-151. Berlin Heidelberg: Springer-Verlag.]). The local coordinate system of atoms in the L-alanine and taurine molecules for MM used connecting atoms inside the molecules. The local atomic site symmetries of atoms in the molecules were determined from the molecular structure. Local symmetries of all hydrogen atoms were set to cylinder symmetry. HAR refinements were carried out using the NoSpherA2 option (Kleemiss et al., 2021[Kleemiss, F., Dolomanov, O. V., Bodensteiner, M., Peyerimhoff, N., Midgley, L., Bourhis, L. J., Genoni, A., Malaspina, L. A., Jayatilaka, D., Spencer, J. L., White, F., Grundkötter-Stock, B., Steinhauer, S., Lentz, D., Puschmann, H. & Grabowsky, S. (2021). Chem. Sci. 12, 1675-1692.]) in Olex2. The program ORCA was used for the update table, which is a calculation of atomic scattering factors for bonded atoms. The basis set was 6-31G(d) and the density functional BLYP. The conditions for HAR were zero total charge of a molecule, multiplicity of the wavefunction was one and the self-consistent field (SCF) strategy for normal convergence. In the XCW method, the 6-31G(d) basis set was again used in the analysis. The analysis was performed using both Hartree–Fock (HF) and density functional theory (DFT). The λ in the analysis was increased from 0.0 with 0.05 steps. The analysis was continued until the SCF cycle was unable to converge. The CRYSTAL14 program (Dovesi et al., 2014[Dovesi, R., Orlando, R., Erba, A., Zicovich-Wilson, C. M., Civalleri, B., Casassa, S., Maschio, L., Ferrabone, M., De La Pierre, M., D'Arco, P., Noël, Y., Causà, M., Rérat, M. & Kirtman, B. (2014). Int. J. Quantum Chem. 114, 1287-1317.]) was used to perform a single-point energy calculation with the functional/basis-set representation B3LYP/POB-TZVP-rev2 for the experimental geometry. The experimental lattice constants were not optimized in the calculation. To smooth convergence, a level-shifting value of 0.6 Hartree was set for the molecular orbitals of the Fock matrix. Theoretical structure factors were calculated by the program CRYSTAL14 for comparison with the experimental data.

3. Results and discussion

3.1. Refinement results of IAM, HAR, MM and XCW analysis for multi-temperature data

Initial structure analysis was carried out using the program SHELXL (Sheldrick, 2008[Sheldrick, G. M. (2008). Acta Cryst. A64, 112-122.]). Table 1[link] shows a list of refinement statistics of the temperature-dependence data for L-alanine and taurine. All datasets have an average redundancy of more than 10. The completeness of all the datasets exceeded 96.5% with a reciprocal resolution of 1.67 Å−1. R1 and wR2 were as small as 0.037 and 0.092. There was a checkCIF B-alert on the rigid-bond test for all the taurine data.

Table 1
Refinement statistics for the independent-atom model (IAM) for temperature-dependence data for L-alanine and taurine

Sample Temperature (K) (sin θ)/λmax−1) R1 wR2 Rint Average redundancy Completeness (%)
L-Alanine 40 1.6667 0.0273 0.0655 0.0718 10.4 96.6
100 1.4706 0.0240 0.0638 0.0739 20.4 99.9
150 1.3514 0.0310 0.0798 0.0762 14.2 99.9
200 1.2821 0.0366 0.0914 0.0776 15.4 100.0
Taurine 85 1.3736 0.0235 0.0723 0.0756 13.9 100.0
150 1.1900 0.0287 0.0786 0.0831 10.1 100.0
200 1.1110 0.0302 0.0852 0.0836 10.0 100.0

HAR was carried out for the temperature-dependent datasets using DFT with the B3LYP functional and the 6-31G(d) basis set. Table 2[link] shows the refinement statistics of HAR for L-alanine and taurine. R1 and wR2 for HAR were improved by 0.003 to 0.008 and 0.001 to 0.017, respectively, compared with those from the SHELX refinement for L-alanine. R1 and wR2 for HAR were improved by 0.004 to 0.005 and 0.02 to 0.02, respectively, compared with those of the SHELX refinement for taurine. The B-alert of checkCIF for taurine data at 150 K disappeared.

Table 2
Refinement statistics of HAR for temperature-dependence data for L-alanine and taurine

Sample Temperature (K) (sin θ)/λmax−1) R1 wR2 GooF
L-Alanine 40 1.6667 0.0260 0.0639 0.8680
100 1.4706 0.0194 0.0456 1.0605
150 1.3514 0.0244 0.0634 0.7882
200 1.2821 0.0286 0.0729 0.8575
Taurine 85 1.3736 0.0197 0.0510 1.0147
150 1.190 0.0242 0.0567 1.0061
200 1.111 0.0252 0.0591 1.0422

MM refinements were also carried out for these data. Anharmonic thermal parameters up to the fourth order were added for C, N, O and S atoms. Table 3[link] lists R, Rw and goodness of fit (GooF) for the MM refinements. The improvement in R and Rw was again significant. R is around 1% for L-alanine and around 2% for taurine. Overall R for the MM improved by more than 0.015 compared with the SHELX refinement for L-alanine and taurine.

Table 3
Refinement statistics of MM for temperature-dependence data for L-alanine and taurine

Sample Temperature (K) (sin θ)/λmax−1) R Rw GooF
L-Alanine 40 1.6667 0.0103 0.0233 0.8727
100 1.4706 0.0081 0.0221 0.7790
150 1.3514 0.0097 0.0225 0.7996
200 1.2821 0.0095 0.0222 0.7907
Taurine 85 1.3736 0.0122 0.0250 1.0197
150 1.190 0.0179 0.0379 0.9813
200 1.111 0.0175 0.0369 0.9441

Next, XCW analyses were carried out for the temperature-dependent diffraction data. Four kinds of analyses were performed. XCW analysis, which is a combination of four calculation steps, was carried out for each sample and each data point. The XCW method involves fitting a wavefunction to the X-ray diffraction data, which helps to accurately reconstruct the charge density within a crystal. A single-molecule wavefunction and a cluster around the central molecule were compared. The cluster around the central molecule for each symmetry-generated molecule within a radius of 8 Å was used for the analysis. Table 4[link] lists R1, wR2 and GooF for the XCW analysis of L-alanine using a cluster arrangement and DFT. The B3LYP functional and POB-TZVP-rev2 (Kleemiss et al., 2021[Kleemiss, F., Dolomanov, O. V., Bodensteiner, M., Peyerimhoff, N., Midgley, L., Bourhis, L. J., Genoni, A., Malaspina, L. A., Jayatilaka, D., Spencer, J. L., White, F., Grundkötter-Stock, B., Steinhauer, S., Lentz, D., Puschmann, H. & Grabowsky, S. (2021). Chem. Sci. 12, 1675-1692.]) basis set were used for the DFT calculation. Values for R1 span from 0.0206 to 0.0318. wR2 values were in the range 0.0195 to 0.1028.

Table 4
Refinement statistics for the XCW method for temperature-dependence data of L-alanine and taurine

Sample Temperature (K) (sin θ)/λmax−1) λmax R1 wR2 GooF
L-Alanine 40 1.6667 1.30 0.0273 0.0525 0.9220
100 1.4706 0.85 0.0208 0.0196 0.9505
150 1.3514 1.30 0.0275 0.0861 1.0139
200 1.2821 0.65 0.0318 0.0550 1.1386
Taurine 85 1.3736 1.65 0.0248 0.0525 0.8478
150 1.190 2.15 0.0315 0.0923 0.9151
200 1.111 2.35 0.0327 0.0617 0.9371

Fig. 1[link] shows the λ dependence of χ2 for the four types of XCW analyses. Fig. 1[link](a) shows L-alanine at 40 K and Fig. 1[link](b) is taurine at 85 K. It can be recognized that the most realistic analysis condition, which is a combination of a cluster model and DFT as indicated by black circles, gave the lowest χ2 at λ = 0.0 for both L-alanine and taurine. The facts indicate that the present experimental data include detailed information on the charge density such as electron correlation and electron polarization which are not included in a single-molecule HF calculation. χ2 drastically decreased from λ = 0.0 to λ = 0.5. Then, χ2 gradually decreased with increasing λ.

[Figure 1]
Figure 1
λ dependence of χ2 for the XCR analysis: (a) L-alanine at 40 K, (b) taurine at 85 K.

3.2. Comparison with the previous data

So far, accurate single-crystal diffraction data of L-alanine and taurine were reported by Destro et al. (1988[Destro, R., Marsh, R. E. & Bianchi, R. (1988). J. Phys. Chem. 92, 966-973.]) and Hibbs et al. (2003[Hibbs, D. E., Austin-Woods, C. J., Platts, J. A., Overgaard, J. & Turner, P. (2003). Chem. A Eur. J. 9, 1075-1084.]) using laboratory X-ray sources and diffractometers. The L-alanine data of Destro et al. (1988[Destro, R., Marsh, R. E. & Bianchi, R. (1988). J. Phys. Chem. 92, 966-973.]) were widely used for QCr studies including HAR, XCW, NoMoRe and MM methods (Destro et al., 1988[Destro, R., Marsh, R. E. & Bianchi, R. (1988). J. Phys. Chem. 92, 966-973.]). The taurine data of Hibbs were analyzed by MM refinement. We compared the refinements of the present datasets with these previous analyses. The reciprocal resolution of the 23 K data of Destro et al. (1988[Destro, R., Marsh, R. E. & Bianchi, R. (1988). J. Phys. Chem. 92, 966-973.]) was (sin θ)/λmax = 1.0778 Å−1, which was lower than that of any of the present temperature-dependence data. R1 of the IAM refinement of the previous data was 0.0320, which was much higher than that of the present dataset. R1 of the IAM refinement of the present 40 K data was 0.0273 with (sin θ)/λmax = 1.6667 Å−1 reciprocal resolution. R1 of MM of the previous data was 0.0203 which was much higher than that of the previous 40 K data, 0.0113, with (sin θ)/λmax = 1.6667 Å−1 resolution. R1 of HAR for the previous data was 0.019. R1 of HAR for the present data at 40 K with (sin θ)/λmax = 1.6667 Å−1 reciprocal resolution was 0.026. R1 of the present full-resolution data was higher than that of the previous data. R1 of the present data with the same resolution of the previous data, (sin θ)/λmax = 1.0778 Å−1, was 0.0119. The quality of the present data was at least comparable and probably even better than that of the previous data in the refinement.

Fig. 2[link] shows the deformation density due to the electron correlation and the electron polarization determined from the present data. The deformation density was calculated as the difference electron density between the XCW result and a single-molecule HF calculation. Figs. 2[link](a)–2[link](e) are 40, 100, 150 and 200 K, in order. The difference density between λ = λmax to λ = 0.0 by a single-molecule model with HF calculation is shown in the figure to show the correlation and polarization. The red solid and mesh surfaces are −0.005 and −0.0025 a.u. The blue solid and mesh surfaces are 0.005 and 0.0025 a.u. At all temperatures, a blue positive electron density was observed around the nucleus, and a red negative differential electron density was observed between bonds. This is consistent with the study by Hupf et al. (2023[Hupf, E., Kleemiss, F., Borrmann, T., Pal, R., Krzeszczakowska, J. M., Woińska, M., Jayatilaka, D., Genoni, A. & Grabowsky, S. (2023). J. Chem. Phys. 158, 124103.]). The data measured in this study can be extracted from the effects of electronic correlations and polarization is contained in the experimental data in small amounts.

[Figure 2]
Figure 2
Deformation density due to the electron correlation and polarization determined from the present data. (a) 40 K, (b) 100 K, (c) 150 K and (d) 200 K. The red solid and mesh surfaces are −0.005 and −0.0025 a.u. The blue solid and mesh surfaces are 0.005 and 0.0025 a.u.

In the present 85 K data of taurine, (sin θ)/λmax = 1.3736 Å−1 with R1 = 0.0235 and wR2 = 0.0723. The number of measured reflections was 147423 and the number of independent reflections was 10090. The taurine 100 K data from Hibbs et al. (2003[Hibbs, D. E., Austin-Woods, C. J., Platts, J. A., Overgaard, J. & Turner, P. (2003). Chem. A Eur. J. 9, 1075-1084.]) were (sin θ)/λmax = 1.240 Å−1 with R1 = 0.023 and wR2 = 0.058. R1 and wR2 of the dataset at 85 K performed at (sin θ)/λmax = 1.240 Å−1 – which was the same resolution as the data of Hibbs et al. (2003[Hibbs, D. E., Austin-Woods, C. J., Platts, J. A., Overgaard, J. & Turner, P. (2003). Chem. A Eur. J. 9, 1075-1084.]) – were 0.0205 and 0.0647. R1 of the present 85 K data was 0.0025 lower than the data from Hibbs et al. (2003[Hibbs, D. E., Austin-Woods, C. J., Platts, J. A., Overgaard, J. & Turner, P. (2003). Chem. A Eur. J. 9, 1075-1084.]) and wR2 was 0.0067 higher. The present data had a lower R1 than the Hibbs et al. (2003[Hibbs, D. E., Austin-Woods, C. J., Platts, J. A., Overgaard, J. & Turner, P. (2003). Chem. A Eur. J. 9, 1075-1084.]) data, even though the number of measured reflections was more than 6 times greater. The completeness was also 100%, which was better than the 97% of Hibbs et al. (2003[Hibbs, D. E., Austin-Woods, C. J., Platts, J. A., Overgaard, J. & Turner, P. (2003). Chem. A Eur. J. 9, 1075-1084.]).

MM refinement for the present 85 K data with (sin θ)/λmax = 1.3736 Å−1 resulted in R1 = 0.0128 and Rw = 0.0259. The refinement with (sin θ)/λmax = 1.240 Å−1 for comparison with the data of Hibbs et al. (2003[Hibbs, D. E., Austin-Woods, C. J., Platts, J. A., Overgaard, J. & Turner, P. (2003). Chem. A Eur. J. 9, 1075-1084.]) resulted in R1 = 0.0128 and Rw = 0.0261. In the MM of taurine at 100 K in Hibbs et al. (2003[Hibbs, D. E., Austin-Woods, C. J., Platts, J. A., Overgaard, J. & Turner, P. (2003). Chem. A Eur. J. 9, 1075-1084.]), R1 = 0.018 and Rw = 0.035.

3.2.1. Findings of small amounts of twinning from the accurate analysis for taurine

In the present study, we found that charge density refinement can indicate of small amounts of twinning. Twinning affected the residual electron density distribution and can be detected by MM refinement and QCr studies of taurine. We believe that the taurine crystal studied in Sections 2 and 3 was not affected by twinning. We also performed MM analysis on our own twinned sample data in the present study. In order to distinguish the no-twinning sample, the sample in which twinning is found is called taurine-2. At 85 K, MM refinement of no-twinning taurine resulted in R1 = 0.0113, Rw = 0.0246 and GooF = 0.9478. At 40 K, MM refinement of taurine-2 resulted in R1 = 0.0184, Rw = 0.0358 and GooF = 2.2319. The GooF of taurine-2 was 1.2841 greater than that of taurine. In the difference electron density map after MM refinement of taurine-2, a difference electron density was observed around the sulfur atom that was not seen in the no-twinning sample.

Fig. 3[link] shows a difference electron density map of taurine-2 at 40 K with its molecular structure. This map is the difference between the experimental data and the electron density refined by MM. The difference electron density between the bonds disappeared after MM refinement. Difference electron densities were observed around the sulfur atoms similar to the previous studies by Hibbs et al. (2003[Hibbs, D. E., Austin-Woods, C. J., Platts, J. A., Overgaard, J. & Turner, P. (2003). Chem. A Eur. J. 9, 1075-1084.]). We consider this a strong indicator for the presence of minor twinning in the earlier study.

[Figure 3]
Figure 3
Difference electron density maps of taurine-2 at 40 K with the molecular structure. (a) C007–S001–O002, (b) C007–S001–O003 and (c) C007–S001–O004 atoms were on the plane. The contour lines were drawn at the 0.1 e Å−3 step. Red lines are positive, bule dashed lines are negative and the black solid line is 0.0 e Å−3.

Fig. 4[link] shows a difference electron density map of the C007–S001–O002 plane in the MM refinement of the no-twinning sample and taurine-2. The no-twinning sample had no difference electron densities around sulfur atoms. Data from taurine-2 showed electron density difference around the sulfur atoms similar to the previous study by Hibbs et al. (2003[Hibbs, D. E., Austin-Woods, C. J., Platts, J. A., Overgaard, J. & Turner, P. (2003). Chem. A Eur. J. 9, 1075-1084.]).

[Figure 4]
Figure 4
Difference electron density map of the C007–S001–O002 plane in the MM refinement of (a) the no-twinning sample and (b) taurine-2. The levels of the lines are the same as those in Fig. 3[link].

Table 5[link] shows the ratio of indexed reflections for the no-twinning sample and taurine-2. From the left, the columns show the name of the measurement dataset, the number of indexed reflections, the number of unindexed reflections and the percentage of indexed reflections. The percentages of indexed reflections of the no-twinning sample and taurine-2 were 99.03 and 96.77%, respectively.

Table 5
Ratio of indexed reflections of the no-twinning sample and taurine-2

Data Indexed reflections Unindexed reflections Ratio of indexed reflections (%)
No-twinning sample 13801 135 99.03
Taurine-2 81141 2708 96.77
Taurine-2 (twinning) Component 1: 79764 1389 Component 1: 96.8
Component 2: 1707 Component 2: 3.7

Taurine-2 was indexed as a twin crystal. There was a possibility that reflections that did not appear in the diffraction of a single crystal would appear when a twinned sample was investigated. This could be seen from the fact that the ratio of indexed reflections of taurine-2, which had the difference electron density around the sulfur atom, was 96.77%, which was 2.26% lower than that of the no-twinning sample. Two types of components were used in the twin indexing. There were 79764 reflections of component 1, 1707 reflections of component 2, 1389 overlapped reflections and 989 unindexed reflections. The reflections of components 1 and 2 were 96.8 and 3.7%, respectively. Overall, the proportion of reflections with integer exponents was 98.82%.

QCr revealed that difference electron density appeared around the sulfur atom of taurine due to minor twinning. Table 5[link] shows that the ratio of indexed reflections of taurine-2 is 96.77%. R1 and Rw after MM refinement of taurine-2 were 0.0184 and 0.0358, respectively. The R1 and Rw values after MM refinement in Hibbs et al. (2003[Hibbs, D. E., Austin-Woods, C. J., Platts, J. A., Overgaard, J. & Turner, P. (2003). Chem. A Eur. J. 9, 1075-1084.]) were 0.018 and 0.035, respectively. The data for taurine-2 were sufficiently low in R1 and Rw compared with the previous data. The ratio of indexed reflections with the non-twinned sample, which was considered to be a single crystal, was 99.03%. This ratio was 2.26% higher than that of taurine-2. As shown in Fig. 4[link], there was no difference electron density between carbon–carbon bonds. Therefore, we conclude that strong bonds such as carbon–carbon are sufficiently well reproduced from the data even with a small amount of twinning. A slight twinning effect is manifested in the difference electron density around the sulfur atom by performing MM refinement.

3.3. Temperature dependence of XCW analysis for taurine

In the present study, we extracted the effects of electron correlations in chemical bonds and electronic polarization of taurine from XCW analysis using diffraction data in the absence of twinning. The analysis of structure factors from CRYSTAL14 can serve as a theoretical reference. First, the XCW analysis of CRYSTAL14 structure factors was described. Then, the XCW analysis of experimental data was shown in comparison with CRYSTAL14 results.

XCW analysis of the theoretical structure factor from CRYSTAL14 for L-alanine was additionally performed to evaluate the quality of the structure factors. The deformation density due to electron correlation extracted by XCW analysis of L-alanine was comparable to the work of Hupf et al. (2023[Hupf, E., Kleemiss, F., Borrmann, T., Pal, R., Krzeszczakowska, J. M., Woińska, M., Jayatilaka, D., Genoni, A. & Grabowsky, S. (2023). J. Chem. Phys. 158, 124103.]). To confirm the quality of the structure factors from CRYSTAL14, XCW analysis using these structure factors was also performed for L-alanine under the same conditions as for taurine. The SCF calculation of the CRYSTAL calculation of L-alanine was completed in 13 cycles. The total energy was −1294.8 a.u. with this method/basis-set selection. Fig. 5[link] shows the deformation of the electron density due to the electron correlation extracted by XCW analysis using the CRYSTAL structure factors of L-alanine. The figure shows a difference electron density between λ = 0.0 (using HF theory) and XCW fitted λ = 5.0. This difference electron density represented the deformation of the electron density due to electron correlation as extracted by the XCW method. The surface level of the electron density shown was the same as in Fig. 2[link]. A positive difference electron density was observed around the nucleus, and a negative difference electron density was observed between covalent bonds. These features were almost consistent with those reported by Hupf et al. (2023[Hupf, E., Kleemiss, F., Borrmann, T., Pal, R., Krzeszczakowska, J. M., Woińska, M., Jayatilaka, D., Genoni, A. & Grabowsky, S. (2023). J. Chem. Phys. 158, 124103.]). It was found that the deformation density around the nucleus and between bonds due to electron correlations and electronic polarization could be reconstructed by the XCW method using the CRYSTAL structure factors.

[Figure 5]
Figure 5
Deformation of the electron density due to the electron correlation extracted by the XCW method using the CRYSTAL structure factors of L-alanine. The electron density surface level shown is the same as in Fig. 2[link].

The SCF calculation for taurine used the same method and basis set. It was completed after 11 cycles, and the total energy was −3035.3 a.u. The calculated structure factors were again used for XCW analysis. Fig. 6[link] shows the deformation density due to the electron correlation extracted by the XCW method using the CRYSTAL14 structure factors of taurine. Difference electron density between λ = 0.0 and λmax is shown. The red solid and mesh surfaces are −0.0025 and −0.00125 a.u. The blue solid and mesh surfaces are 0.0025 and 0.00125 a.u. As with L-alanine, positive difference electron densities were observed around the nucleus and negative difference electron densities were observed between covalent bonds. The negative difference between the bonds of the oxygen and sulfur atoms spread around the oxygen atoms.

[Figure 6]
Figure 6
Deformation of the electron density due to the electron correlation extracted by the XCW method using the CRYSTAL structure factors of taurine. The electron density surface level shown is the same as in Fig. 2[link].

Fig. 7[link] shows the difference electron density between λ = 0.0 and λmax for the XCW method using taurine data at 85 K. Fig. 7[link](a) is the BLYP with cluster calculation, Fig. 7[link](b) is the BLYP without cluster calculation, Fig. 7[link](c) is the HF with cluster calculation and Fig. 7[link](d) is the HF without cluster calculation. The electron density surface level shown is the same as in Fig. 6[link]. In the XCW analysis of taurine, effects that could not be expressed by the theory excluding the polarization and electron correlation of nitro­gen and carbon atoms of Fig. 7[link](a), and the deformation of the electron density due to the polarization of Fig. 7[link](d), resulted in a negative electron density around the nucleus, and a positive difference between bonds.

[Figure 7]
Figure 7
Difference electron density using the XCW method for the temperature dependence of the taurine data. The electron density surface level shown is the same as in Fig. 2[link].

This was consistent with the XCW results for the taurine CRYSTAL14 structure factors shown in Fig. 6[link]. The positive difference electron density around the sulfur atom of taurine for Figs. 7[link](c) and 7[link](d) was wider than that for Figs. 7[link](a) and 7[link](b). This was qualitatively similar to the positive difference electron density around the sulfur atom that was not seen in Fig. 6[link].

4. Conclusions

In this study, we measured and evaluated the quality of high-quality temperature-dependence diffraction data of L-alanine and taurine. By evaluating three types of analyses, namely MM, HAR and XCW, it was found that the measured temperature-dependence data can be used productively for QCr research. Using synchrotron radiation and data with a high signal-to-noise ratio, it was possible to identify a very small number of factors that contribute to reducing data quality, such as slight twinning in the example of taurine as reported earlier. In the future, we believe the data measured in this study will be used to advance the methodology of QCr. New techniques of QCr, which include tools such as periodic HAR, have been developed recently. We hope that the present data will be used for the further development of these approaches.

Supporting information


Computing details top

(lalanine8_40k) top
Crystal data top
C3H7NO2F(000) = 182
Mr = 86.10Dx = 1.352 Mg m3
Orthorhombic, P212121Synchrotron radiation, λ = 0.2478 Å
a = 5.79932 (16) ÅCell parameters from 16295 reflections
b = 5.94057 (12) Åθ = 1.1–24.4°
c = 12.2815 (3) ŵ = 0.03 mm1
V = 423.11 (2) Å3T = 40 K
Z = 4Block, colourless
Data collection top
Esperanto-CrysAlisPro-abstract goniometer imported esperanto images
diffractometer
Rint = 0.084
Radiation source: synchrotronθmax = 24.4°, θmin = 1.2°
ω scansh = 1918
15872 measured reflectionsk = 1914
15872 independent reflectionsl = 3940
14120 reflections with I > 2σ(I)
Refinement top
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH-atom parameters constrained
R[F2 > 2σ(F2)] = 0.027 w = 1/[σ2(Fo2) + (0.0221P)2 + 0.0019P]
where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.066(Δ/σ)max = 0.003
S = 1.06Δρmax = 0.58 e Å3
15872 reflectionsΔρmin = 0.30 e Å3
57 parametersAbsolute structure: Flack x determined using 5474 quotients [(I+)-(I-)]/[(I+)+(I-)] (Parsons, Flack and Wagner, Acta Cryst. B69 (2013) 249-259).
0 restraintsAbsolute structure parameter: 0.3 (6)
Special details top

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
O0010.23883 (2)0.55886 (2)0.68408 (2)0.00821 (1)
O0020.37548 (2)0.27299 (2)0.58382 (2)0.00833 (1)
N0030.81685 (2)0.35262 (2)0.63753 (2)0.00690 (1)
H00A0.8006170.3068310.5689560.008*
H00B0.7933680.2371340.6823380.008*
H00C0.9587640.4059970.6472270.008*
C0040.40004 (2)0.44578 (2)0.64083 (2)0.00591 (1)
C0050.64564 (2)0.53336 (2)0.66108 (2)0.00612 (1)
H0050.6594590.5762670.7378530.007*
C0060.69653 (3)0.73975 (3)0.59071 (2)0.00889 (2)
H00D0.8478840.7955100.6072790.013*
H00E0.5844880.8547350.6054510.013*
H00F0.6891710.6985980.5151960.013*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
O0010.00530 (2)0.00983 (3)0.00952 (3)0.00062 (2)0.00079 (2)0.00224 (2)
O0020.00768 (3)0.00866 (3)0.00865 (2)0.00085 (2)0.00059 (2)0.00274 (2)
N0030.00552 (2)0.00755 (3)0.00763 (2)0.00045 (2)0.00005 (2)0.00017 (2)
C0040.00496 (3)0.00692 (3)0.00585 (2)0.00031 (2)0.00004 (2)0.00026 (2)
C0050.00515 (3)0.00689 (3)0.00633 (3)0.00023 (2)0.00006 (2)0.00047 (2)
C0060.00789 (3)0.00796 (3)0.01082 (4)0.00066 (3)0.00036 (3)0.00158 (3)
Geometric parameters (Å, º) top
O001—C0041.2679 (2)C004—C0051.5367 (2)
O002—C0041.2506 (2)C005—H0050.9800
N003—H00A0.8900C005—C0061.5288 (2)
N003—H00B0.8900C006—H00D0.9600
N003—H00C0.8900C006—H00E0.9600
N003—C0051.4907 (2)C006—H00F0.9600
H00A—N003—H00B109.5N003—C005—C006109.837 (11)
H00A—N003—H00C109.5C004—C005—H005108.6
H00B—N003—H00C109.5C006—C005—C004111.035 (11)
C005—N003—H00A109.5C006—C005—H005108.6
C005—N003—H00B109.5C005—C006—H00D109.5
C005—N003—H00C109.5C005—C006—H00E109.5
O001—C004—C005115.864 (11)C005—C006—H00F109.5
O002—C004—O001125.835 (12)H00D—C006—H00E109.5
O002—C004—C005118.300 (11)H00D—C006—H00F109.5
N003—C005—C004110.002 (10)H00E—C006—H00F109.5
N003—C005—H005108.6
O001—C004—C005—N003162.140 (11)O002—C004—C005—N00318.178 (16)
O001—C004—C005—C00676.064 (15)O002—C004—C005—C006103.618 (14)
(lalanine8_100k_run10) top
Crystal data top
C3H7NO2F(000) = 182
Mr = 86.10Dx = 1.345 Mg m3
Orthorhombic, P212121Synchrotron radiation, λ = 0.2489 Å
a = 5.8033 (2) ÅCell parameters from 19303 reflections
b = 5.95953 (15) Åθ = 1.3–21.5°
c = 12.2978 (3) ŵ = 0.03 mm1
V = 425.32 (2) Å3T = 100 K
Z = 4Block, colourless
Data collection top
Esperanto-CrysAlisPro-abstract goniometer imported esperanto images
diffractometer
Rint = 0.084
Radiation source: synchrotronθmax = 21.6°, θmin = 1.2°
ω scansh = 1617
11459 measured reflectionsk = 1717
11459 independent reflectionsl = 3636
10527 reflections with I > 2σ(I)
Refinement top
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH-atom parameters constrained
R[F2 > 2σ(F2)] = 0.024 w = 1/[σ2(Fo2) + (0.0284P)2 + 0.0015P]
where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.064(Δ/σ)max = 0.002
S = 1.08Δρmax = 0.36 e Å3
11459 reflectionsΔρmin = 0.24 e Å3
57 parametersAbsolute structure: Flack x determined using 4326 quotients [(I+)-(I-)]/[(I+)+(I-)] (Parsons, Flack and Wagner, Acta Cryst. B69 (2013) 249-259).
0 restraintsAbsolute structure parameter: 0.4 (6)
Special details top

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
O0010.23873 (2)0.55734 (3)0.68421 (2)0.01284 (2)
O0020.37494 (2)0.27250 (3)0.58387 (2)0.01289 (2)
N0030.81643 (2)0.35141 (2)0.63765 (2)0.01029 (2)
H00A0.8015340.3071110.5688920.012*
H00B0.7915670.2355380.6817700.012*
H00C0.9582250.4039190.6482540.012*
C0040.39972 (2)0.44472 (3)0.64090 (2)0.00905 (2)
C0050.64545 (2)0.53181 (3)0.66115 (2)0.00920 (2)
H0050.6592740.5745950.7378130.011*
C0060.69656 (3)0.73753 (3)0.59083 (2)0.01348 (2)
H00D0.8474170.7936220.6077630.020*
H00E0.5840460.8518610.6051450.020*
H00F0.6902960.6962410.5154290.020*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
O0010.00748 (3)0.01619 (4)0.01484 (4)0.00071 (3)0.00101 (3)0.00355 (3)
O0020.01097 (4)0.01438 (4)0.01331 (4)0.00161 (3)0.00101 (3)0.00433 (3)
N0030.00767 (3)0.01199 (3)0.01121 (3)0.00045 (2)0.00001 (3)0.00043 (3)
C0040.00707 (3)0.01143 (4)0.00865 (3)0.00066 (3)0.00000 (2)0.00042 (3)
C0050.00727 (3)0.01102 (4)0.00931 (3)0.00050 (3)0.00005 (3)0.00087 (3)
C0060.01105 (4)0.01259 (5)0.01682 (6)0.00118 (4)0.00049 (4)0.00251 (4)
Geometric parameters (Å, º) top
O001—C0041.2677 (2)C004—C0051.5378 (2)
O002—C0041.2514 (2)C005—H0050.9800
N003—H00A0.8900C005—C0061.5294 (2)
N003—H00B0.8900C006—H00D0.9600
N003—H00C0.8900C006—H00E0.9600
N003—C0051.4913 (2)C006—H00F0.9600
H00A—N003—H00B109.5N003—C005—C006109.833 (13)
H00A—N003—H00C109.5C004—C005—H005108.6
H00B—N003—H00C109.5C006—C005—C004111.028 (13)
C005—N003—H00A109.5C006—C005—H005108.6
C005—N003—H00B109.5C005—C006—H00D109.5
C005—N003—H00C109.5C005—C006—H00E109.5
O001—C004—C005115.893 (13)C005—C006—H00F109.5
O002—C004—O001125.805 (15)H00D—C006—H00E109.5
O002—C004—C005118.301 (13)H00D—C006—H00F109.5
N003—C005—C004110.019 (12)H00E—C006—H00F109.5
N003—C005—H005108.6
O001—C004—C005—N003162.020 (14)O002—C004—C005—N00318.234 (19)
O001—C004—C005—C00676.181 (19)O002—C004—C005—C006103.565 (18)
(lalanine8_150k) top
Crystal data top
C3H7NO2F(000) = 182
Mr = 86.10Dx = 1.338 Mg m3
Orthorhombic, P212121Synchrotron radiation, λ = 0.2481 Å
a = 5.80343 (13) ÅCell parameters from 21590 reflections
b = 5.98084 (14) Åθ = 1.2–19.8°
c = 12.3143 (3) ŵ = 0.03 mm1
V = 427.42 (2) Å3T = 150 K
Z = 4Block, colourless
Data collection top
Esperanto-CrysAlisPro-abstract goniometer imported esperanto images
diffractometer
Rint = 0.078
Radiation source: synchrotronθmax = 19.8°, θmin = 1.2°
ω scansh = 1415
9044 measured reflectionsk = 1616
9044 independent reflectionsl = 3333
8070 reflections with I > 2σ(I)
Refinement top
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH-atom parameters constrained
R[F2 > 2σ(F2)] = 0.031 w = 1/[σ2(Fo2) + (0.0364P)2 + 0.002P]
where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.080(Δ/σ)max = 0.001
S = 1.07Δρmax = 0.46 e Å3
9044 reflectionsΔρmin = 0.20 e Å3
57 parametersAbsolute structure: Flack x determined using 3161 quotients [(I+)-(I-)]/[(I+)+(I-)] (Parsons, Flack and Wagner, Acta Cryst. B69 (2013) 249-259).
0 restraintsAbsolute structure parameter: 0.5 (10)
Special details top

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
O0010.23867 (3)0.55543 (5)0.68439 (2)0.01774 (3)
O0020.37427 (4)0.27203 (4)0.58396 (2)0.01792 (3)
N0030.81582 (3)0.34981 (4)0.63779 (2)0.01386 (3)
H00A0.8021060.3068190.5689040.017*
H00B0.7896620.2337330.6813090.017*
H00C0.9575900.4014500.6492020.017*
C0040.39934 (3)0.44335 (4)0.64101 (2)0.01230 (3)
C0050.64511 (4)0.52973 (4)0.66119 (2)0.01234 (3)
H0050.6589750.5723680.7377550.015*
C0060.69662 (5)0.73457 (5)0.59102 (3)0.01846 (4)
H00D0.8469180.7911280.6085060.028*
H00E0.5833660.8480920.6047580.028*
H00F0.6919240.6931160.5157420.028*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
O0010.00955 (5)0.02318 (8)0.02048 (7)0.00092 (5)0.00132 (5)0.00502 (7)
O0020.01445 (6)0.02104 (8)0.01827 (7)0.00246 (5)0.00149 (5)0.00635 (6)
N0030.00970 (5)0.01690 (6)0.01497 (6)0.00054 (4)0.00008 (4)0.00073 (5)
C0040.00906 (5)0.01637 (6)0.01147 (5)0.00105 (5)0.00010 (4)0.00048 (5)
C0050.00927 (5)0.01549 (6)0.01226 (6)0.00073 (5)0.00001 (4)0.00127 (5)
C0060.01443 (8)0.01774 (9)0.02320 (11)0.00167 (7)0.00067 (7)0.00356 (8)
Geometric parameters (Å, º) top
O001—C0041.2665 (3)C004—C0051.5372 (3)
O002—C0041.2509 (3)C005—H0050.9800
N003—H00A0.8900C005—C0061.5287 (4)
N003—H00B0.8900C006—H00D0.9600
N003—H00C0.8900C006—H00E0.9600
N003—C0051.4908 (3)C006—H00F0.9600
H00A—N003—H00B109.5N003—C005—C006109.83 (2)
H00A—N003—H00C109.5C004—C005—H005108.6
H00B—N003—H00C109.5C006—C005—C004111.06 (2)
C005—N003—H00A109.5C006—C005—H005108.6
C005—N003—H00B109.5C005—C006—H00D109.5
C005—N003—H00C109.5C005—C006—H00E109.5
O001—C004—C005115.92 (2)C005—C006—H00F109.5
O002—C004—O001125.79 (2)H00D—C006—H00E109.5
O002—C004—C005118.30 (2)H00D—C006—H00F109.5
N003—C005—C004110.046 (19)H00E—C006—H00F109.5
N003—C005—H005108.6
O001—C004—C005—N003161.86 (2)O002—C004—C005—N00318.37 (3)
O001—C004—C005—C00676.30 (3)O002—C004—C005—C006103.47 (3)
(lalanine8_200k) top
Crystal data top
C3H7NO2F(000) = 182
Mr = 86.10Dx = 1.331 Mg m3
Orthorhombic, P212121Synchrotron radiation, λ = 0.2481 Å
a = 5.8030 (3) ÅCell parameters from 6951 reflections
b = 6.0038 (3) Åθ = 1.2–18.6°
c = 12.3330 (5) ŵ = 0.03 mm1
V = 429.69 (3) Å3T = 200 K
Z = 4Block, colourless
Data collection top
Esperanto-CrysAlisPro-abstract goniometer imported esperanto images
diffractometer
Rint = 0.082
Radiation source: synchrotronθmax = 18.6°, θmin = 1.2°
ω scansh = 1314
7591 measured reflectionsk = 1515
7591 independent reflectionsl = 3131
6711 reflections with I > 2σ(I)
Refinement top
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH-atom parameters constrained
R[F2 > 2σ(F2)] = 0.037 w = 1/[σ2(Fo2) + (0.0422P)2 + 0.003P]
where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.091(Δ/σ)max = 0.001
S = 1.09Δρmax = 0.49 e Å3
7591 reflectionsΔρmin = 0.17 e Å3
57 parametersAbsolute structure: Flack x determined using 2485 quotients [(I+)-(I-)]/[(I+)+(I-)] (Parsons, Flack and Wagner, Acta Cryst. B69 (2013) 249-259).
0 restraintsAbsolute structure parameter: 1.8 (10)
Special details top

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
O0010.23859 (5)0.55341 (6)0.68462 (3)0.02272 (5)
O0020.37346 (6)0.27168 (6)0.58409 (3)0.02298 (5)
N0030.81528 (4)0.34814 (5)0.63790 (3)0.01746 (4)
H00A0.8011450.3049490.5691910.021*
H00B0.7893240.2327610.6815350.021*
H00C0.9571620.3995760.6490410.021*
C0040.39892 (4)0.44193 (5)0.64116 (2)0.01549 (4)
C0050.64487 (5)0.52751 (5)0.66125 (2)0.01550 (4)
H0050.6588600.5699780.7376890.019*
C0060.69671 (7)0.73143 (7)0.59122 (4)0.02350 (6)
H00D0.8471980.7874100.6086010.035*
H00E0.5837590.8447680.6050130.035*
H00F0.6917240.6902050.5160450.035*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
O0010.01165 (7)0.03005 (13)0.02647 (11)0.00101 (8)0.00169 (7)0.00660 (10)
O0020.01794 (9)0.02757 (12)0.02342 (11)0.00336 (8)0.00197 (8)0.00831 (9)
N0030.01178 (6)0.02173 (9)0.01888 (9)0.00061 (7)0.00008 (6)0.00101 (8)
C0040.01092 (7)0.02122 (10)0.01433 (7)0.00135 (7)0.00014 (6)0.00051 (8)
C0050.01116 (7)0.01997 (9)0.01536 (8)0.00103 (7)0.00002 (6)0.00169 (7)
C0060.01781 (11)0.02289 (13)0.02980 (17)0.00220 (10)0.00085 (11)0.00492 (12)
Geometric parameters (Å, º) top
O001—C0041.2653 (4)C004—C0051.5370 (4)
O002—C0041.2498 (4)C005—H0050.9800
N003—H00A0.8900C005—C0061.5282 (5)
N003—H00B0.8900C006—H00D0.9600
N003—H00C0.8900C006—H00E0.9600
N003—C0051.4901 (4)C006—H00F0.9600
H00A—N003—H00B109.5N003—C005—C006109.83 (3)
H00A—N003—H00C109.5C004—C005—H005108.6
H00B—N003—H00C109.5C006—C005—C004111.07 (3)
C005—N003—H00A109.5C006—C005—H005108.6
C005—N003—H00B109.5C005—C006—H00D109.5
C005—N003—H00C109.5C005—C006—H00E109.5
O001—C004—C005115.96 (3)C005—C006—H00F109.5
O002—C004—O001125.75 (3)H00D—C006—H00E109.5
O002—C004—C005118.29 (3)H00D—C006—H00F109.5
N003—C005—C004110.09 (3)H00E—C006—H00F109.5
N003—C005—H005108.6
O001—C004—C005—N003161.71 (3)O002—C004—C005—N00318.51 (4)
O001—C004—C005—C00676.42 (4)O002—C004—C005—C006103.36 (4)
(taurine51_85k) top
Crystal data top
C2H7NO3SF(000) = 264
Mr = 125.15Dx = 1.736 Mg m3
Monoclinic, P21/cSynchrotron radiation, λ = 0.2484 Å
a = 5.27398 (14) ÅCell parameters from 10559 reflections
b = 11.6550 (3) Åθ = 1.1–20.0°
c = 7.8107 (2) ŵ = 0.05 mm1
β = 93.993 (3)°T = 85 K
V = 478.95 (2) Å3Block, colourless
Z = 4
Data collection top
Esperanto-CrysAlisPro-abstract goniometer imported esperanto images
diffractometer
Rint = 0.077
Radiation source: synchrotronθmax = 20.0°, θmin = 1.1°
ω scansh = 1414
10090 measured reflectionsk = 3132
10090 independent reflectionsl = 2121
8700 reflections with I > 2σ(I)
Refinement top
Refinement on F20 restraints
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.024H-atom parameters constrained
wR(F2) = 0.072 w = 1/[σ2(Fo2) + (0.0329P)2 + 0.0043P]
where P = (Fo2 + 2Fc2)/3
S = 1.05(Δ/σ)max = 0.002
10090 reflectionsΔρmax = 0.69 e Å3
65 parametersΔρmin = 0.42 e Å3
Special details top

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
S0010.29827 (2)0.34983 (2)0.64975 (2)0.00854 (1)
O0020.27015 (3)0.41230 (2)0.48606 (2)0.01152 (2)
O0030.15886 (4)0.24208 (2)0.64638 (3)0.01402 (2)
O0040.56789 (3)0.33836 (2)0.70890 (3)0.01382 (2)
N0050.23270 (3)0.63050 (2)0.66693 (2)0.01051 (2)
H00A0.3053920.6008980.5774230.013*
H00B0.2929250.7008240.6878290.013*
H00C0.0652180.6338490.6438040.013*
C0060.29057 (4)0.55669 (2)0.82055 (3)0.01123 (2)
H00D0.2350340.5954300.9212970.013*
H00E0.4729620.5457310.8369630.013*
C0070.16098 (4)0.43978 (2)0.80344 (3)0.01054 (2)
H00F0.0178630.4507660.7696920.013*
H00G0.1733400.4018420.9142440.013*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
S0010.00722 (2)0.00649 (1)0.01199 (2)0.00044 (1)0.00120 (1)0.00022 (1)
O0020.01202 (4)0.01121 (4)0.01149 (4)0.00013 (3)0.00196 (3)0.00105 (3)
O0030.01512 (5)0.00909 (4)0.01824 (6)0.00471 (4)0.00394 (4)0.00126 (4)
O0040.00830 (4)0.01092 (4)0.02200 (7)0.00169 (3)0.00070 (4)0.00149 (4)
N0050.01007 (4)0.00868 (4)0.01291 (5)0.00052 (3)0.00177 (3)0.00026 (3)
C0060.01151 (5)0.00961 (5)0.01234 (6)0.00010 (4)0.00086 (4)0.00119 (4)
C0070.01030 (5)0.00979 (5)0.01166 (5)0.00018 (4)0.00180 (4)0.00036 (4)
Geometric parameters (Å, º) top
S001—O0021.4699 (2)N005—C0061.4907 (3)
S001—O0031.4545 (2)C006—H00D0.9700
S001—O0041.4703 (2)C006—H00E0.9700
S001—C0071.7849 (2)C006—C0071.5260 (3)
N005—H00A0.8900C007—H00F0.9700
N005—H00B0.8900C007—H00G0.9700
N005—H00C0.8900
O002—S001—O004110.801 (11)N005—C006—H00D109.1
O002—S001—C007105.840 (9)N005—C006—H00E109.1
O003—S001—O002113.059 (11)N005—C006—C007112.298 (16)
O003—S001—O004113.815 (11)H00D—C006—H00E107.9
O003—S001—C007106.926 (10)C007—C006—H00D109.1
O004—S001—C007105.715 (11)C007—C006—H00E109.1
H00A—N005—H00B109.5S001—C007—H00F109.1
H00A—N005—H00C109.5S001—C007—H00G109.1
H00B—N005—H00C109.5C006—C007—S001112.532 (14)
C006—N005—H00A109.5C006—C007—H00F109.1
C006—N005—H00B109.5C006—C007—H00G109.1
C006—N005—H00C109.5H00F—C007—H00G107.8
O002—S001—C007—C00659.327 (16)O004—S001—C007—C00658.273 (16)
O003—S001—C007—C006179.881 (14)N005—C006—C007—S00171.023 (19)
(taurine51_150k) top
Crystal data top
C2H7NO3SF(000) = 264
Mr = 125.15Dx = 1.721 Mg m3
Monoclinic, P21/cSynchrotron radiation, λ = 0.2484 Å
a = 5.27400 (18) ÅCell parameters from 6682 reflections
b = 11.6462 (4) Åθ = 1.1–17.4°
c = 7.8849 (3) ŵ = 0.05 mm1
β = 94.073 (4)°T = 150 K
V = 483.08 (3) Å3Block, colourless
Z = 4
Data collection top
Esperanto-CrysAlisPro-abstract goniometer imported esperanto images
diffractometer
Rint = 0.086
Radiation source: synchrotronθmax = 17.4°, θmin = 1.1°
ω scansh = 1212
6757 measured reflectionsk = 2727
6757 independent reflectionsl = 1818
5737 reflections with I > 2σ(I)
Refinement top
Refinement on F20 restraints
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.029H-atom parameters constrained
wR(F2) = 0.079 w = 1/[σ2(Fo2) + (0.0288P)2 + 0.0112P]
where P = (Fo2 + 2Fc2)/3
S = 1.06(Δ/σ)max = 0.003
6757 reflectionsΔρmax = 0.51 e Å3
65 parametersΔρmin = 0.34 e Å3
Special details top

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
S0010.29814 (2)0.34899 (2)0.64946 (2)0.01364 (2)
O0020.26967 (6)0.41146 (2)0.48735 (4)0.01798 (4)
O0030.15920 (6)0.24120 (2)0.64614 (5)0.02226 (5)
O0040.56763 (5)0.33780 (3)0.70797 (5)0.02193 (5)
N0050.23410 (5)0.62973 (2)0.66754 (4)0.01585 (4)
H00A0.3083360.6003400.5793990.019*
H00B0.2938140.7001100.6890050.019*
H00C0.0668370.6330010.6433360.019*
C0060.28980 (7)0.55570 (3)0.81954 (5)0.01706 (4)
H00D0.2329460.5943330.9190110.020*
H00E0.4720950.5447040.8370040.020*
C0070.16057 (6)0.43888 (3)0.80153 (4)0.01604 (4)
H00F0.0181640.4499590.7676180.019*
H00G0.1723270.4006940.9111300.019*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
S0010.01160 (3)0.01029 (3)0.01917 (3)0.00074 (2)0.00215 (2)0.00046 (2)
O0020.01906 (9)0.01763 (8)0.01757 (9)0.00013 (7)0.00357 (7)0.00133 (7)
O0030.02441 (11)0.01424 (8)0.02884 (13)0.00789 (8)0.00690 (10)0.00239 (8)
O0040.01298 (7)0.01654 (9)0.03587 (16)0.00286 (6)0.00110 (8)0.00242 (9)
N0050.01541 (8)0.01289 (7)0.01953 (10)0.00092 (6)0.00317 (7)0.00070 (7)
C0060.01766 (10)0.01465 (9)0.01847 (11)0.00045 (8)0.00145 (8)0.00213 (8)
C0070.01582 (9)0.01508 (9)0.01745 (10)0.00023 (7)0.00294 (8)0.00069 (7)
Geometric parameters (Å, º) top
S001—O0021.4691 (3)N005—C0061.4887 (5)
S001—O0031.4528 (3)C006—H00D0.9700
S001—O0041.4686 (3)C006—H00E0.9700
S001—C0071.7842 (3)C006—C0071.5238 (5)
N005—H00A0.8900C007—H00F0.9700
N005—H00B0.8900C007—H00G0.9700
N005—H00C0.8900
O002—S001—C007105.834 (16)N005—C006—H00D109.1
O003—S001—O002113.07 (2)N005—C006—H00E109.1
O003—S001—O004113.86 (2)N005—C006—C007112.37 (3)
O003—S001—C007106.884 (17)H00D—C006—H00E107.9
O004—S001—O002110.74 (2)C007—C006—H00D109.1
O004—S001—C007105.764 (19)C007—C006—H00E109.1
H00A—N005—H00B109.5S001—C007—H00F109.1
H00A—N005—H00C109.5S001—C007—H00G109.1
H00B—N005—H00C109.5C006—C007—S001112.70 (2)
C006—N005—H00A109.5C006—C007—H00F109.1
C006—N005—H00B109.5C006—C007—H00G109.1
C006—N005—H00C109.5H00F—C007—H00G107.8
O002—S001—C007—C00659.62 (3)O004—S001—C007—C00657.93 (3)
O003—S001—C007—C006179.60 (3)N005—C006—C007—S00170.72 (3)
(taurine51_200k) top
Crystal data top
C2H7NO3SF(000) = 264
Mr = 125.15Dx = 1.710 Mg m3
Monoclinic, P21/cSynchrotron radiation, λ = 0.2484 Å
a = 5.2794 (3) ÅCell parameters from 3593 reflections
b = 11.6513 (7) Åθ = 1.2–16.0°
c = 7.9226 (5) ŵ = 0.05 mm1
β = 94.112 (6)°T = 200 K
V = 486.08 (5) Å3Block, colourless
Z = 4
Data collection top
Esperanto-CrysAlisPro-abstract goniometer imported esperanto images
diffractometer
Rint = 0.085
Radiation source: synchrotronθmax = 16.0°, θmin = 1.1°
ω scansh = 1111
5326 measured reflectionsk = 2525
5326 independent reflectionsl = 1717
4487 reflections with I > 2σ(I)
Refinement top
Refinement on F20 restraints
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.030H-atom parameters constrained
wR(F2) = 0.085 w = 1/[σ2(Fo2) + (0.0342P)2 + 0.0196P]
where P = (Fo2 + 2Fc2)/3
S = 1.04(Δ/σ)max = 0.002
5326 reflectionsΔρmax = 0.46 e Å3
65 parametersΔρmin = 0.32 e Å3
Special details top

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
S0010.29778 (2)0.34867 (2)0.64915 (2)0.01755 (3)
O0020.26911 (8)0.41108 (3)0.48792 (5)0.02312 (6)
O0030.15900 (9)0.24098 (3)0.64584 (6)0.02865 (8)
O0040.56676 (7)0.33747 (3)0.70733 (7)0.02825 (8)
N0050.23500 (8)0.62936 (3)0.66804 (5)0.02016 (6)
H00A0.3115150.6006550.5808640.024*
H00B0.2926870.6999130.6903630.024*
H00C0.0681450.6319030.6425490.024*
C0060.28948 (9)0.55524 (4)0.81887 (6)0.02169 (7)
H00D0.2321520.5937430.9177780.026*
H00E0.4715400.5442100.8367750.026*
C0070.16039 (9)0.43847 (4)0.80035 (6)0.02038 (6)
H00F0.0180980.4496180.7663720.024*
H00G0.1717980.4001880.9093510.024*
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
S0010.01498 (4)0.01323 (4)0.02462 (5)0.00091 (2)0.00272 (3)0.00064 (3)
O0020.02457 (13)0.02249 (13)0.02271 (13)0.00004 (10)0.00455 (10)0.00169 (10)
O0030.03145 (17)0.01823 (12)0.0372 (2)0.01010 (12)0.00872 (15)0.00290 (12)
O0040.01674 (11)0.02135 (13)0.0462 (2)0.00397 (10)0.00118 (13)0.00337 (13)
N0050.01959 (12)0.01624 (10)0.02496 (15)0.00118 (9)0.00373 (11)0.00087 (10)
C0060.02253 (15)0.01852 (13)0.02351 (16)0.00053 (11)0.00186 (12)0.00286 (11)
C0070.02010 (13)0.01895 (13)0.02244 (16)0.00027 (10)0.00392 (12)0.00118 (11)
Geometric parameters (Å, º) top
S001—O0021.4682 (4)N005—C0061.4856 (6)
S001—O0031.4522 (4)C006—H00D0.9700
S001—O0041.4670 (4)C006—H00E0.9700
S001—C0071.7833 (5)C006—C0071.5241 (6)
N005—H00A0.8900C007—H00F0.9700
N005—H00B0.8900C007—H00G0.9700
N005—H00C0.8900
O002—S001—C007105.80 (2)N005—C006—H00D109.1
O003—S001—O002113.07 (3)N005—C006—H00E109.1
O003—S001—O004113.86 (3)N005—C006—C007112.46 (4)
O003—S001—C007106.86 (2)H00D—C006—H00E107.8
O004—S001—O002110.76 (3)C007—C006—H00D109.1
O004—S001—C007105.80 (3)C007—C006—H00E109.1
H00A—N005—H00B109.5S001—C007—H00F109.0
H00A—N005—H00C109.5S001—C007—H00G109.0
H00B—N005—H00C109.5C006—C007—S001112.82 (3)
C006—N005—H00A109.5C006—C007—H00F109.0
C006—N005—H00B109.5C006—C007—H00G109.0
C006—N005—H00C109.5H00F—C007—H00G107.8
O002—S001—C007—C00659.77 (4)O004—S001—C007—C00657.81 (4)
O003—S001—C007—C006179.48 (4)N005—C006—C007—S00170.61 (4)
 

Acknowledgements

The authors thank Dr T. Galica and Dr Y. Nakamura for analytical and experimental help.

Funding information

The following funding is acknowledged: Japan Society for the Promotion of Science (grant Nos. JP19KK0132, JP20H04656, JP21H05235, JP24H00415). The synchrotron experiments performed at SPring-8 BL02B1 were carried out with the approval of the Japan Synchrotron Radiation Research Institute (proposal Nos. 2023B1859, 2023A1555, 2023A1860, 2022B1595, 2022B0530, 2022A1744, 2021B1140, 2021A0159).

References

First citationBlessing, R. H. (1997). J. Appl. Cryst. 30, 421–426.  CrossRef CAS Web of Science IUCr Journals Google Scholar
First citationCapelli, S. C., Bürgi, H.-B., Dittrich, B., Grabowsky, S. & Jayatilaka, D. (2014). IUCrJ, 1, 361–379.  Web of Science CSD CrossRef CAS PubMed IUCr Journals Google Scholar
First citationDestro, R., Marsh, R. E. & Bianchi, R. (1988). J. Phys. Chem. 92, 966–973.  CSD CrossRef CAS Web of Science Google Scholar
First citationDittrich, B., Chan, S., Wiggin, S., Stevens, J. S. & Pidcock, E. (2020). CrystEngComm, 22, 7420–7431.  Web of Science CrossRef CAS Google Scholar
First citationDittrich, B., Sze, E., Holstein, J. J., Hübschle, C. B. & Jayatilaka, D. (2012). Acta Cryst. A68, 435–442.  Web of Science CSD CrossRef CAS IUCr Journals Google Scholar
First citationDolomanov, O. V., Bourhis, L. J., Gildea, R. J., Howard, J. A. K. & Puschmann, H. (2009). J. Appl. Cryst. 42, 339–341.  Web of Science CrossRef CAS IUCr Journals Google Scholar
First citationDovesi, R., Orlando, R., Erba, A., Zicovich–Wilson, C. M., Civalleri, B., Casassa, S., Maschio, L., Ferrabone, M., De La Pierre, M., D'Arco, P., Noël, Y., Causà, M., Rérat, M. & Kirtman, B. (2014). Int. J. Quantum Chem. 114, 1287–1317.  Web of Science CrossRef CAS Google Scholar
First citationGao, C., Genoni, A., Gao, S., Jiang, S., Soncini, A. & Overgaard, J. (2020). Nat. Chem. 12, 213–219.  Web of Science CSD CrossRef CAS PubMed Google Scholar
First citationGenoni, A., Dos Santos, L. H. R., Meyer, B. & Macchi, P. (2017). IUCrJ, 4, 136–146.  Web of Science CrossRef CAS PubMed IUCr Journals Google Scholar
First citationGrabowsky, S., Genoni, A. & Bürgi, H.-B. (2017). Chem. Sci. 8, 4159–4176.  Web of Science CrossRef CAS PubMed Google Scholar
First citationGrabowsky, S., Luger, P., Buschmann, J., Schneider, T., Schirmeister, T., Sobolev, A. N. & Jayatilaka, D. (2012). Angew. Chem. Int. Ed. 51, 6776–6779.  Web of Science CSD CrossRef ICSD CAS Google Scholar
First citationHansen, N. K. & Coppens, P. (1978). Acta Cryst. A34, 909–921.  CrossRef CAS IUCr Journals Web of Science Google Scholar
First citationHibbs, D. E., Austin–Woods, C. J., Platts, J. A., Overgaard, J. & Turner, P. (2003). Chem. A Eur. J. 9, 1075–1084.  CSD CrossRef CAS Google Scholar
First citationHirshfeld, F. L. (1976). Acta Cryst. A32, 239–244.  CrossRef IUCr Journals Web of Science Google Scholar
First citationHoser, A. A. & Madsen, A. Ø. (2016). Acta Cryst. A72, 206–214.  Web of Science CSD CrossRef IUCr Journals Google Scholar
First citationHupf, E., Kleemiss, F., Borrmann, T., Pal, R., Krzeszczakowska, J. M., Woińska, M., Jayatilaka, D., Genoni, A. & Grabowsky, S. (2023). J. Chem. Phys. 158, 124103.  Web of Science CSD CrossRef PubMed Google Scholar
First citationJayatilaka, D. (1998). Phys. Rev. Lett. 80, 798–801.  Web of Science CrossRef CAS Google Scholar
First citationJayatilaka, D. & Dittrich, B. (2008). Acta Cryst. A64, 383–393.  Web of Science CrossRef CAS IUCr Journals Google Scholar
First citationJayatilaka, D. & Grimwood, D. J. (2003). Computational Science – ICCS 2003, Lecture Notes in Computer Science, Vol. 2660, edited by P. M. A. Sloot, D. Abramson, A. V. Bogdanov, Y. E. Gorbachev, J. J. Dongarra & A. Y. Zomaya, pp. 142–151. Berlin Heidelberg: Springer-Verlag.  Google Scholar
First citationKasai, H., Tolborg, K., Sist, M., Zhang, J., Hathwar, V. R., Filsø, M. O., Cenedese, S., Sugimoto, K., Overgaard, J., Nishibori, E. & Iversen, B. B. (2018). Nat. Mater. 17, 249–252.  CrossRef CAS PubMed Google Scholar
First citationKitou, S., Gen, M., Nakamura, Y., Sugimoto, K., Tokunaga, Y., Ishiwata, S. & Arima, T.-H. (2023). Adv. Sci. 10, 2302839.  CrossRef ICSD Google Scholar
First citationKitou, S., Manjo, T., Katayama, N., Shishidou, T., Arima, T.-H., Taguchi, Y., Tokura, Y., Nakamura, T., Yokoyama, T., Sugimoto, K. & Sawa, H. (2020). Phys. Rev. Res. 2, 033503.  CrossRef ICSD Google Scholar
First citationKleemiss, F., Dolomanov, O. V., Bodensteiner, M., Peyerimhoff, N., Midgley, L., Bourhis, L. J., Genoni, A., Malaspina, L. A., Jayatilaka, D., Spencer, J. L., White, F., Grundkötter-Stock, B., Steinhauer, S., Lentz, D., Puschmann, H. & Grabowsky, S. (2021). Chem. Sci. 12, 1675–1692.  Web of Science CSD CrossRef CAS Google Scholar
First citationKoritsánszky, T. S. & Coppens, P. (2001). Chem. Rev. 101, 1583–1628.  Web of Science PubMed Google Scholar
First citationKrause, L., Tolborg, K., Grønbech, T. B. E., Sugimoto, K., Iversen, B. B. & Overgaard, J. (2020). J. Appl. Cryst. 53, 635–649.  Web of Science CSD CrossRef CAS IUCr Journals Google Scholar
First citationNeese, F. (2012). WIREs Comput. Mol. Sci. 2, 73–78.  Web of Science CrossRef CAS Google Scholar
First citationRigaku (2022). CrysAlisPro. Version 171.42.90a. Rigaku Oxford Diffraction, Yarnton, Oxfordshire, UK.  Google Scholar
First citationSchmøkel, M. S., Bjerg, L., Larsen, F. K., Overgaard, J., Cenedese, S., Christensen, M., Madsen, G. K. H., Gatti, C., Nishibori, E., Sugimoto, K., Takata, M. & Iversen, B. B. (2013). Acta Cryst. A69, 570–582.  Web of Science CrossRef ICSD IUCr Journals Google Scholar
First citationSheldrick, G. M. (2008). Acta Cryst. A64, 112–122.  Web of Science CrossRef CAS IUCr Journals Google Scholar
First citationSingh, P., Gollapalli, K., Mangiola, S., Schranner, D., Yusuf, M. A., Chamoli, M., Shi, S. L., Bastos, B. L., Nair, T., Riermeier, A., Vayndorf, E. M., Wu, J. Z., Nilakhe, A., Nguyen, C. Q., Muir, M., Kiflezghi, M. G., Foulger, A., Junker, A., Devine, J., Sharan, K., Chinta, S. J., Rajput, S., Rane, A., Baumert, P., Schönfelder, M., Iavarone, F., di Lorenzo, G., Kumari, S., Gupta, A., Sarkar, R., Khyriem, C., Chawla, A. S., Sharma, A., Sarper, N., Chattopadhyay, N., Biswal, B. K., Settembre, C., Nagarajan, P., Targoff, K. L., Picard, M., Gupta, S., Velagapudi, V., Papenfuss, A. T., Kaya, A., Ferreira, M. G., Kennedy, B. K., Andersen, J. K., Lithgow, G. J., Ali, A. M., Mukhopadhyay, A., Palotie, A., Kastenmüller, G., Kaeberlein, M., Wackerhage, H., Pal, B. & Yadav, V. K. (2023). Science, 380, eabn9257.  CrossRef PubMed Google Scholar
First citationSugimoto, K., Ohsumi, H., Aoyagi, S., Nishibori, E., Moriyoshi, C., Kuroiwa, Y., Sawa, H. & Takata, M. (2010). AIP Conf. Proc. 1234, 887–891.  CrossRef CAS Google Scholar
First citationVolkov, A., Macchi, P., Farrugia, L. J., Gatti, C., Mallinson, P. R. & Koritsanszky, T. (2016). XD2016 - A Computer Program Package for Multipole Refinement, Topological Analysis of Charge Densities and Evaluation of Intermolecular Energies from Experimental and Theoretical Structure Factors. University at Buffalo, State University of New York, New York, USA. https://www.chem.gla.ac.uk/~louis/xd-home/Google Scholar
First citationVosegaard, E. S., Thomsen, M. K., Krause, L., Grønbech, T. B. E., Mamakhel, A., Takahashi, S., Nishibori, E. & Iversen, B. B. (2022). Chem. A Eur. J. 28, e202201295.  Web of Science CSD CrossRef Google Scholar
First citationWaller, M. P., Howard, S. T., Platts, J. A., Piltz, R. O., Willock, D. J. & Hibbs, D. E. (2006). Chem. A Eur. J. 12, 7603–7614.  CrossRef CAS Google Scholar

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IUCrJ
Volume 12| Part 3| May 2025| Pages 384-392
ISSN: 2052-2525