research papers
accessCatching new modulated high-pressure phases of δ-chlorpropamide: when the experimental setup matters
aSobolev Institute of Geology and Mineralogy SB RAS, Novosibirsk, Russian Federation, bNovosibirsk State University, Novosibirsk, Russian Federation, and cSynchrotron Radiation Facility SKIF, Koltsovo, Russian Federation
*Correspondence e-mail: [email protected]
The antidiabetic drug chlorpropamide [1-(4-chlorophenyl)sulfonyl-3-propylurea, CPA] has one of the highest numbers of reported polymorphs, making it an excellent model system for studying structural responses to pressure or temperature. The densest polymorph, δ-CPA, was probed by single-crystal X-ray diffraction at both laboratory and synchrotron facilities. A new high-pressure phase with tripled cell parameter b as compared with the ambient pressure phase was discovered. High-brilliance synchrotron sources and fast data collection strategies allowed us to also detect the formation of the intermediate incommensurately modulated phase at 2.37 (5) GPa. The experiments revealed the effect of the pressure-increasing protocol on the structure evolution on hydrostatic compression. The importance and necessity of conducting both laboratory and synchrotron experiments for the same compound when studying solid-state transformations is illustrated. The opportunities provided by synchrotron sources for studying phase transformations are discussed, together with specific characteristics of synchrotron experiments that should not be overlooked.
Keywords: δ-chlorpropamide; phase transitions; high pressure; incommensurately modulated structures; polymorphism; kinetic effects.
B-IncStrDB reference: V9VuwNzvTbh
1. Introduction
The properties of chlorpropamide [1-(4-chlorophenyl)sulfonyl-3-propylurea, CPA] are an important subject for research. This compound can be used to treat type-2 diabetes (Cervantes-Amezcua, 1965
) so, like all pharmaceutical substances, it is subjected to increased attention and rigorous control, necessitating detailed studies under various conditions. CPA is also among the record holders in terms of the number of described and/or registered polymorphs – compounds with the same chemical composition but different crystal structures (Figs. 1
and 2
) (Burger & Ramberger, 1979
; Ayala et al., 2012
; Ward et al., 2023
).
| | Figure 1 Conformations of the CPA molecules in different polymorphs that can exist at ambient conditions. Molecules are shown with the N–C–N plane normal to the plane of the figure. |
| | Figure 2 The types of structural motifs of different CPA polymorphs that can exist at ambient conditions. |
Currently, at least twelve polymorphs of CPA have been documented (Burger & Ramberger, 1979
; Koo et al., 1980
; Drebushchak et al., 2006
, 2007
; Drebushchak, Chukanov & Boldyreva, 2008
; Drebushchak et al., 2009
; Drebushchak, Drebushchak & Boldyreva, 2011
; Seryotkin et al., 2013
; Ayala et al., 2012
; Zakharov, Seryotkin et al., 2016
; Belenguer et al., 2019
; Ward et al., 2023
), making CPA an excellent model compound for studying crystal structures and intermolecular interactions, and their response to temperature and pressure variations (Cruz-Cabeza & Bernstein, 2014
; Ward et al., 2023
).
The thermodynamically stable (Drebushchak, Drebushchak, Chukanov & Boldyreva, 2008
) α-polymorph is the commercially available form, while other reported forms can be obtained by varying the crystallization conditions and solvents from α-CPA (β, γ and δ) (Drebushchak et al., 2006
, 2007
; Drebushchak, Chukanov & Boldyreva, 2008
), including gel crystallization and spray-drying (Ward et al., 2023
), by heating nearly to the melting point (ɛ-CPA, T = 398 K) (Drebushchak, Chukanov & Boldyreva, 2008
; Drebushchak, Drebushchak, Chukanov & Boldyreva, 2008
), by cooling (Drebushchak et al., 2009
; Drebushchak, Drebushchak & Boldyreva, 2011
), hydrostatic compression (Boldyreva et al., 2006
; Wasicki et al., 2009
; Seryotkin et al., 2013
; Loshak et al., 2013
; Kichanov et al., 2015
; Zakharov, Goryainov & Boldyreva, 2016
; Zakharov, Seryotkin et al., 2016
) or ball-milling (Drebushchak, Ogienko & Boldyreva, 2011
; Bouvart et al., 2018
; Belenguer et al., 2019
; Ward et al., 2023
). The β, γ, δ, ɛ, ζ and η polymorphs are metastable at room temperature and pressure, but once obtained can be preserved. The polymorphs obtained on cooling or on hydrostatic compression, in contrast, cannot be quenched to ambient conditions.
All the polymorphs described so far are based on the same structure-forming motif formed by strong N—H⋯O hydrogen bonds. The structural diversity of the conformational polymorphs arises from the changes in the orientation of the aromatic ring and the alkyl terminal group with respect to the `rigid core' of the molecule (type I or type II,1 Fig. 1
), the conformation of the C3H8 fragment itself, and variations of the orientation of the neighboring hydrogen-bonded chains with respect to each other (Z or π motif, Fig. 2
) (Drebushchak, Drebushchak & Boldyreva, 2011
). The newly documented highly metastable ζ and η polymorphs fit into this general trend, which was first described for the α, β, γ, δ and ɛ polymorphs. Molecular packing in the η polymorph is of Z type, with molecular conformation of type II, whereas that of the ζ polymorph is of unique H type (somewhat similar to the π motif, but not identical with it) with molecular conformation of type I (Ward et al., 2023
). A summary of structural features of all the polymorphs that can exist at ambient conditions is given in Table 1
.
|
The low-temperature (βII, βIII, ɛ′) or high-pressure (α′) polymorphs for which crystal structures could be solved preserve the same hydrogen-bonded core, and have similar types of molecular conformations and packing motifs (Fig. 3
, Table 2
).
|
| Figure 3 Conformations of the CPA molecules in the asymmetric unit of the low-temperature (a)–(c) and high-pressure (d) polymorphs for which crystal structures have been solved. Molecules are shown with the N–C–N plane normal to the plane of the figure. |
An interesting feature is that for some polymorphs of CPA the number of molecules in the is more than one, with symmetry-independent molecules differing slightly in the orientation of the aromatic and the alkyl fragments. For example, molecular packing in the densest CPA polymorph, namely δ-CPA, is similar to that in the thermodynamically more stable α-CPA, but the number of molecules in the unit cell is doubled, enabling a denser packing (Drebushchak, Chukanov & Boldyreva, 2008
). On cooling, reversible solid-state single-crystal-to-single-crystal phase transformations were observed for the β- and ɛ-CPA polymorphs. In the β polymorph the was related to commensurate structural modulation, and the number of molecules in the changed from 1 at room temperature to 2 at ∼257 K and then to 4 at 125 K (Drebushchak, Drebushchak & Boldyreva, 2011
). Also, a high-pressure polymorph formed on compression of α-CPA has twice as many molecules in the asymmetric unit than the starting polymorph, with the two symmetry-independent molecules differing in their conformations, but this increase in the number of independent molecules did not cause doubling of a unit-cell parameter (Seryotkin et al., 2013
). A reversible polymorphic transition on cooling another polymorph, namely ɛ-CPA, was not related to structural modulation, but was accompanied by a conformational change from type II to type I (Drebushchak et al., 2009
).
The response of the polymorphs of CPA to hydrostatic compression is controlled kinetically (Boldyreva, 2007
). Under hydrostatic compression different polymorphs can coexist simultaneously (Zakharov, Goryainov & Boldyreva, 2016
). Different high-pressure polymorphs are formed at the same pressure points depending on the starting polymorph (Seryotkin et al., 2013
; Zakharov, Goryainov & Boldyreva, 2016
). Moreover, the choice of the pressure-transmitting fluid (or its absence) may have a significant effect on the structural changes induced by hydrostatic compression of the same starting polymorph (Boldyreva et al., 2006
; Seryotkin et al., 2013
; Zakharov, Seryotkin et al., 2016
). Even seeding does not guarantee that the selected form will grow if another form grows faster (Zakharov, Goryainov & Boldyreva, 2016
).
Most high-pressure studies have been dedicated either to the effect of compression on the stable α form (Boldyreva et al., 2006
; Seryotkin et al., 2013
), or on the least dense and stable β form with a unique molecular π packing (Zakharov, Goryainov & Boldyreva, 2016
; Zakharov, Seryotkin et al., 2016
). It is interesting to compare the results obtained for these forms with the effect of pressure on the densest among all the CPA polymorphs, namely the δ form. Analysis of the Raman spectra of a crystal of δ-CPA on hydrostatic compression in a pentane–isopentane mixture in a diamond anvil cell (DAC) has revealed a reversible structural transformation upon increasing the pressure from 2.4 (1) to 3.3 (1) GPa (Zakharov, Goryainov & Boldyreva, 2016
). The aim of the present work was to solve the structure of this high-pressure phase using single-crystal X-ray diffraction. This task, however, turned out to be challenging, since different phases were observed in different experiments using laboratory and synchrotron facilities. It took almost ten years from time the first experimental results were obtained to tune the pressure-increasing protocol, the rate of data collection and the proper experimental setup to reveal the evolution of the structure upon hydrostatic compression.
2. Experimental
2.1. Sample preparation
47 mg of α-chlorpropamide (>97%, Sigma) were dissolved in 1 ml of heptane and brought to boiling. Subsequently, 0.5 ml of ethyl acetate was added dropwise. Upon complete dissolution, the mixture was rapidly cooled in an ice bath at 0°C. The resulting precipitate (37 mg) was filtered on a glass filter. The single crystals were obtained as thin (less than 10 µm) transparent colorless plates, their maximum size not exceeding 250 µm.
2.2. Single-crystal X-ray diffraction
In the present study, four independent series of measurements were carried out, two at laboratory sources and two at synchrotron facilities. The first series was performed using an Oxford Diffraction Gemini R Ultra X-ray diffractometer with Ruby CCD detector (Mo Kα, λ = 0.71073 Å), scan step = 0.5°. For pressure generation an Almax-Boehler type diamond anvil cell (Boehler, 2006
) was used with an opening angle 2θ = 80°. A 200 × 100 × 10 µm single crystal was loaded into the DAC and a 1:1 mixture of pentane and isopentane (Klotz et al., 2006
, 2009
) was used as a pressure-transmitting medium. The pressure values were determined by the ruby fluorescence method (Shen et al., 2020
). A stainless-steel gasket pre-indented to 100 µm was used in all experiments.
The second series of single-crystal X-ray diffraction experiments was carried out at the BM01 beamline of the European Synchrotron Radiation Facility (ESRF, Grenoble, France) over the range of pressures from 1 atm. to 4.5 (1) GPa with a 0.5° scan step. The 50 × 50 × 15 µm sample was loaded in an Almax-Boehler DAC with opening angles of 2θ = 80°. A bending magnet was used as an X-ray source with λ = 0.71442 Å (17 keV). Raw diffraction data were collected using an HPC PILATUS 2M detector (Dyadkin et al., 2016
) and pre-processed with the SNBL toolbox (https://soft.snbl.eu). 2 µm ruby chips were used as pressure calibrants, while the gasket material and pressure-transmitting medium were the same as described above for the first series of experiments.
The third series of measurements was performed at the ID27 beamline at the ESRF (Grenoble, France) (Poręba et al., 2023
) from 1 atm. to 7.73 (5) GPa. The 50 × 50 × 15 µm sample was loaded in a membrane-driven DAC equipped with Almax-Boehler type anvils with opening angles 2θ = 64°. An undulator was used as the X-ray source with λ = 0.3738 Å (33 keV). The diffraction data were collected using a MAR 165 CCD detector with a 0.5° scan step. The pressure calibrant, the gasket material and the pressure-transmitting medium were the same as described above.
The fourth series of X-ray diffraction experiments was carried out using a Rigaku Synergy-S Dualflex laboratory diffractometer at Rigaku RESE (Frankfurt, Germany), with an Mo Kα microfocus X-ray tube (λ = 0.71073 Å) together with a Pilatus R3kCdTe HPC detector. Investigations were performed using the same DACs and sample environments as in the first series of the laboratory experiments, using 150 × 50 × 20 µm crystals.
2.3. Data reduction
All the raw data sets were reduced using CrysAlisPro (CrysAlisPro Software System, 2016
). Crystal structure solution was carried out with SHELXT (Sheldrick, 2015b
) using Shelxle (Hübschle et al., 2011
) and Olex2 (Dolomanov et al., 2009
) as a GUI, and refinements were carried out with SHELXL (Sheldrick, 2015a
; Muller et al., 2006
). For regular and periodic structures (marked in this work as δ-CPA, the ambient condition phase, and δ′′HP-CPA, the commensurate high-pressure phase) atomic displacement parameters (ADPs) were refined anisotropically using SIMU and DELU restraints. The hydrogen-atom positions were refined using the `riding model' by AFIX instructions. The incommensurately modulated structure (δ′inc-CPA) was refined at P = 2.59 (5) GPa with modulation vector q = 0.278 (1)b* using Jana2020 (Petříček et al., 2023
) in the Pbca(0β0)s00 space group using the non-modulated structure model at P = 2.03 (5) GPa as an initial model. The details of the of the incommensurately modulated structure are given later in the discussion (in Section 3.2
below). The most disagreeable from the structure model reflections were analyzed and excluded from the reflection file manually. For visualization Vesta (Momma & Izumi, 2011
) and Mercury (Macrae et al., 2020
) were used. The relative strain changes were analyzed using PasCal (Cliffe & Goodwin, 2012
) and WinStrain (Gonzalez-Platas et al., 2016
). For data validation the checkCIF service of the International Union of Crystallography (https://checkcif.iucr.org/) was used.
3. Results and discussion
3.1. Preliminary laboratory and synchrotron (BM01) experiments
The first series of experiments was carried out using an Oxford Diffraction Gemini R Ultra X-ray diffractometer with a Ruby CCD detector. Owing to the sample shape and size together with the low scattering power of the light atoms, the quality of the data obtained was insufficient to solve the Moreover, the standard deviations of the unit-cell parameters versus the applied pressure were too large to even conclude reliably whether a occurred. Therefore, to investigate the changes in the on hydrostatic compression, a high-brilliance source was required.
The second series of the single-crystal diffraction experiments was performed at the BM01 beamline of the ESRF (Grenoble, France). The time separating the measurements at selected pressure points in this series of experiments was about 1.5 h. This included the data collection, and also the time required to increase the pressure, the DAC relaxation, the pressure measurements and adjustments of the experimental setup.
The experiments revealed a to an incommensurately modulated phase in the pressure range 2.03 (5)–2.59 (5) GPa (denoted as the δ′inc-CPA phase). The reciprocal-space reconstruction analysis clearly indicated satellite reflections along the b axis up to the third order (Figure S1). At the first pressure point where satellite reflections were observed [2.59 (5) GPa] the modulation vector q = 0.28 (1)b*. As pressure increased further, the value of the modulation vector increased monotonically, reaching q = 0.33 (1)b* at 3.70 (5) GPa, which corresponds to the formation of a commensurately modulated superstructure – denoted here as the δ′′HP-CPA phase. The crystal structure of the δ′′HP-CPA phase can be described in terms of a superstructure with a tripled b parameter relative to the initial phase (Fig. 4
), using the original space-group symmetry Pbca. The V/Z ratio for the δ′′HP-CPA phase is 253.8 Å3, which is much smaller than for the polymorphs that have been described earlier (Tables 1
and 2
). Transitions from an incommensurate to a commensurately modulated structure have been described in the literature for various crystalline systems (Schaper et al., 2001
; Gibaud et al., 1991
; Tamura et al., 2000
; Bykov et al., 2015
; Degtyareva et al., 2004
; Raghu et al., 1989
; Adam et al., 1981
) and some of them are known as `lock-in' phase transitions (Iizumi & Gesi, 1983
; Schobinger-Papamantellos et al., 1988
; Gibaud et al., 1991
). Such transformations are typically observed during the sequential reduction of the unit-cell volume either on cooling or on hydrostatic compression. A characteristic feature of these transitions is the abrupt formation of an incommensurately modulated structure, followed by a monotonic evolution of the modulation vector from its initial value – corresponding to the incommensurate structure – to a rational value, indicating the formation of a superstructure that can be described with an extended unit cell. For this type of phase transition, once the commensurate structure has formed, the modulation vector generally remains unchanged on further increase in pressure.
| | Figure 4 A δ-CPA molecule with the atom-numbering scheme (a), the δ-CPA crystal structure at ambient pressure in the bc plane (b) and a model of the δ′′HP commensurately modulated structure at 3.70 (5) GPa (c). Structural models were built based on BM01 (ESRF) data sets. Polymorphs β, γ, δ and ɛ are metastable (Drebushchak, Drebushchak, Chukanov & Boldyreva, 2008 |
The variation of the unit-cell parameters versus applied pressure in the range from 1 atm. to 4.04 (5) GPa are plotted in Fig. 5
. The parameters a and c underwent an abrupt change at 2.59 (5) GPa, simultaneously with the first observation of satellite reflections during the In contrast, the unit-cell volume decreased monotonically and continuously through the point. This observation suggests that the abrupt changes in individual parameters are compensated for in such a way that the overall compressibility remains nearly linear, implying continuous changes of the volume per molecule. Such behavior – jumpwise changes of selected unit-cell parameters at a point compensating for each other in such a way that the variation of the unit-cell volume remains continuous – is quite common for organic crystals (Boldyreva, 2018
). In particular, it has been observed previously for β-CPA on cooling (Drebushchak, Drebushchak & Boldyreva, 2011
) and for α-CPA on hydrostatic compression (Seryotkin et al., 2013
). In both cases of structural transformation no additional satellite reflections were detected.
| Figure 5 The unit-cell parameters versus pressure from data collected at BM01, ESRF. After the δ′inc–δ′′HP b′′/3 values are plotted for a more straightforward comparison of the results. The regions of observation of different phases are marked with dashed lines |
The changes along the b axis were continuous up to 3.51 (5) GPa, above which the could be described using a periodic model with a tripled b parameter. Comparing the b parameter of the low-pressure phase with the b′′/3 parameter of the high-pressure phase, one can notice that at 3.51 (5) GPa the pressure dependence of b reached a minimum, then increased at higher pressures. This can be related to the ordering of flexible molecular fragments and their subsequent displacement. It is worth mentioning that at pressures above 3.51 (5) GPa the diffraction peaks broadened, most likely due to the deterioration of crystal quality and the thus precise determination of the unit-cell parameters became quite challenging, making the investigation of crystal-structure dynamics in terms of atomic positions complicated. At pressures above 4.04 (5) GPa partial destruction of the initial sample was observed, accompanied by the almost complete disappearance of the Bragg diffraction maxima (corresponding to a single crystal), making single-crystal data analysis no longer feasible.
3.2. Incommensurately modulated structure
The key to understanding the evolution of the during the course of the is in the structure of the intermediate incommensurately modulated phase. The incommensurately modulated δ′inc-CPA structure at P = 2.59 (5) GPa with modulation vector q = 0.278 (1)b* was refined with Jana2020 (Petříček et al., 2023
) in the space group Pbca(0β0)s00 using the non-modulated structure at P = 2.03 (5) GPa as an initial model. In the incommensurately modulated structure of δ′inc-CPA the atom sites S1, O1, O2, O3, N1, N2, C7 and C8 were described by a harmonic position modulation up to second order (Fig. 6
). In contrast, the atoms of the 4-chlorobenzene molecular fragment (Cl1, C1–C6 in the notation of the non-modulated structure) split into two counterparts: Cl1a, C1a–C6a and Cl1b, C1b–C6b (see Figure S3). The two terminal atoms of the propyl group (C9 and C10 in the notation of the non-modulated structure) demonstrate the same behavior, being split into C9a, C10a and C9b, C10b counterparts (Figure S4). The `a' and `b' parts of the 4-chlorobenzene and propyl fragments are ordered along the modulation vector, which is described by occupational modulation in the form of crenel functions (Figure S4 and Fig. 6
). The `width' of the crenel functions describing the `a' and `b' parts are 0.56 and 0.44 for the 4-chlorobenzene and 0.45 and 0.55 for the propyl fragments of the molecule. The widths and the discontinuity points of the crenel functions were constrained within each of these parts. Positional modulations in crenel intervals were described by first-order Legendre polynomials. The positional modulations in the `a' and `b' parts of the 4-chlorobenzene fragments were constrained to keep the geometry along the modulation vector (`rigid modulation' option in Jana2020). The ADPs for all carbon atoms except C7a and C7b were refined isotropically; the ADPs for C7a and C7b and all non-carbon atoms were refined anisotropically.
| Figure 6 de Wolff sections for the positions of S1 (a) and Cl1a–Cl1b (b) at 2.59 (5) GPa. |
The positional modulation of the 4-chlorobenzene molecular fragment could be decomposed into two components: (1) discontinuous rotation around the [011] direction by ∼10°, corresponding to the interchange between the `a' and `b' orientations of the fragment (Figure S3), and (2) continuous rotation around the S1–Cl1a(Cl1b) axis by ∼20° for the `a' fragment and ∼30° for the `b' fragment (Fig. 7
). For both rotations the S1 atom plays the role of a `hinge', which explains the continuous nature of its modulation despite the covalent bonding with the discontinuously modulated 4-chlorobenzene molecular fragment (Fig. 7
).
| | Figure 7 The angle between the average S1–N2 direction and normal to the aromatic ring plane: C1a–C6a ring (red, left) and C1b–C6b ring (black, right) (a) and the schematic representation of this angle on the δ-CPA molecule (b). |
The discontinuous modulation of the terminal propyl fragment is described by switching between `a' and `b' orientations so that the angle between the normal to the C8–C9a(C9b)–C10a(C10b) plane and the S1–N1 direction changes from ∼10° to ∼70°, respectively. In this case, the C8 atom plays the role of a hinge, being modulated continuously.
3.2.1. Synchrotron experiments at ID27
To determine the sequence of the structural transformations leading from the incommensurately modulated δ′inc-CPA phase to the commensurate δ′′HP phase [the data collected at BM01 allowed us to solve the structure at 2.37 (5) GPa only], the third series of the diffraction experiments was carried out using more intense synchrotron radiation at the dedicated high-pressure beamline ID27 at the ESRF. The X-ray source was an undulator (λ = 0.3738 Å) and data collection was performed using a MAR165 CCD detector. However, the use of the high-brilliance beam combined with the focusing size of 15 µm led to radiation damage (Figure S5), therefore attenuators were used and the beam size was increased threefold. This degradation of the CPA crystals under high-intensity irradiation negated the advantages of utilizing a specialized beamline, forcing us to operate the equipment in a highly inefficient mode.
Nevertheless, after having optimized the experimental setup and beamline parameters, a series of single-crystal X-ray diffraction experiments was carried out in the pressure range from 1 atm. to 7.8 (1) GPa. Owing to the use of significantly shorter wavelength radiation in combination with membrane-driven high-pressure cells, the time between pressure points was reduced to less than an hour. At 2.37 (5) GPa, satellite reflections along the b axis were observed, confirming the formation of the intermediate incommensurately modulated phase previously discovered at BM01. The modulation vector q = 0.29 (1)b* was also in agreement with previous results.
With increasing pressure, the modulation vector increased monotonically to q = 0.33 (1)b*, corresponding to the formation of a high-pressure commensurately modulated phase, which could be described in terms of a superstructure with a tripled b parameter, confirming the results obtained in the second series of experiments. However, the δ′′HP phase formation was observed at 4.9 (1) GPa, which is significantly higher than in the BM01 experiment. An explanation for this discrepancy in the transition pressure is provided below. As a result of using a CCD detector, which has an intrinsic nonzero noise level (critical to the measurements of the low-intensity satellite reflections), and due to the highly inefficient working mode of the experimental beamline because of attempting to reduce the radiation damage, the quality of the collected data set was insufficient to solve the incommensurately modulated phase structure at multiple pressure points. The variation of the unit-cell parameters of δ-CPA with pressure from the data collected at ID27 are shown in Fig. 8
.
| Figure 8 The unit-cell parameters versus pressure for data collected at ID27, ESRF. |
The data differed from those obtained previously in the second series of experiments, but the main trends were reproduced qualitatively. The dependence of a as a function of pressure showed several discontinuities at the points of phase transitions at 2.37 (5) GPa and 4.9 (1) GPa, coinciding with general trends obtained earlier. The unit-cell volume decreased monotonically throughout the pressure range, which was also consistent with the previously observed variation, indicating that the volume change per molecule remained constant. The dependences of b and c on compression were nearly monotonic, with structural transformations manifesting themselves in the changes of the slopes of the curves before and after the points. It is also worth mentioning that no increase of b was observed at high pressures in the third series of experiments. This could be related to the higher pressures at which the occurred.
In general, the structure deformation analysis revealed trends similar to those previously observed at BM01: the highest compressibility was achieved along b, the structure was compressed less [around 8% from the initial values at 7.8 (1) GPa] in the direction parallel to c, whereas the structure was the most rigid along a. Within the pressure range of the existence of the incommensurately modulated phase [2.37 (5) to 4.9 (1) GPa] the compressibility along a was minimal, suggesting that the stability of the is supported by N2—H2⋯O2 and N1—H1⋯O3 hydrogen bonds.
At ID27 the δ-CPA single crystal was also investigated on decompression, which was not achieved during the previous synchrotron experiment at BM01. When releasing pressure in the DAC, the high-pressure commensurately modulated phase (δ′′HP) remained stable at pressures above 2.84 (5) GPa, while on reducing the pressure further to 2.20 (5) GPa, the initial δ-CPA phase reappeared. No satellite reflections corresponding to the incommensurately modulated structure were detected.
3.3. Laboratory observations of the role of the pressure-increasing protocol
Comparison of the results obtained in the two series of synchrotron experiments has shown that in the case of δ-CPA samples the quality of the diffraction data could not be drastically improved by using a higher brilliance synchrotron beam because of radiation damage. Therefore, additionally, a fourth series of experiments was carried out using a Synergy-S Dualflex diffractometer equipped with a Pilatus R3kCdTe HPC detector (Rigaku RESE, Frankfurt, Germany) combining both a fast and sensitive HPC detector and a high-brightness (for an X-ray tube) microfocus X-ray source. The data collection time in this series (∼17 h data collection per pressure point) was significantly longer than in the synchrotron experiments. Two independent measurements were performed. In the first measurement, the initial pressure in the DAC was set to 2.37 (5) GPa – the point of the phase transition as found in previous experiments. At this pressure the cell was kept for roughly 72 h. This pre-experiment revealed additional diffraction maxima that could not be described using the low-pressure structural model for δ-CPA, as was expected based on the synchrotron results. After increasing the pressure to 3.4 (1) GPa the δ′′HP commensurately modulated phase was observed with the modulation vector q = 0.33 (1)b*. No intermediate incommensurately modulated structure could be detected, and the value of the pressure at which the commensurately modulated phase was formed was significantly lower than in the previous series of experiments with faster data collection, i.e. when the sample was kept at a pressure for a shorter time before the diffraction pattern was obtained. The protocol for increasing the pressure is known to have an important effect on high-pressure (Boldyreva, 2007
; Fisch et al., 2015
; Zakharov & Boldyreva, 2019
), so an additional experiment was therefore performed. The initial pressure value was set as 1.94 (5) – insufficient for a phase transition. Only reflections expected from the `normal' δ-CPA model were detected during the pre-experiment. The next pressure point was 2.60 (5) GPa, in the pressure range in which the incommensurately modulated phase δ′inc-CPA was observed in synchrotron experiments. However, only the reflections corresponding to the commensurately modulated δ′′HP phase with tripled b parameter and q = 0.33 (1)b* were observed. Thus, the commensurately modulated high-pressure phase formation was detected at a much lower pressure than was observed when using synchrotron sources. Apparently the structure had more time for the rearrangement into the final δ′′HP phase, so this kinetically controlled transition could be observed at a lower pressure and without `freezing' the intermediate incommensurately modulated states. All the crystallographic information comparing the data from all the series of experiments at synchrotron and laboratory sources is summarized in Table S1, and the unit-cell parameters as a function of pressure obtained in all experiements are plotted together in Figure S6.
3.4. Analysis of structural strain
The values of the relative along the directions of the principal axes of the strain ellipsoid are plotted in Fig. 9
. Since the structure is orthorhombic, the directions of the principal axes of the strain ellipsoid coincide with the crystallographic axes. In the pressure range from 1 atm. to the formation of the δ′′HP phase (commensurately modulated, with tripled b) at 3.70 (5) GPa the structure is most compressible along the b axis – also the direction of the modulation vector after the The lowest compressibility is observed along the a axis. This is the direction along which the N2—H2⋯O2 and N1—H1⋯O3 hydrogen bonds are formed in the structure (Figure S2). After the phase transition, above 3.70 (5) GPa, a sharp compression of the structure along the c direction is observed, while the compressibility of the in the b direction decreases. There are no strong repulsive intermolecular interactions in the c direction, which facilitates compression. The conformational flexibility of the CPA molecules and of their propyl fragments in particular, as well as the `zigzag'-type packing motifs, also account for the higher compressibility values either along b (before the phase transition), or along c (after the phase transition) (Figs. 4
and 11).
| | Figure 9 The relative structural deformations along the directions of the principal axes of the strain ellipsoid at 4.04 (5) GPa for the data collected at BM01, ESRF (a), and the results obtained at ID27, ESRF (b). The dashed lines show the regions of existence of different phases. |
The commensurate modulation of the high-pressure δ′′HP phase is related to the variation in the positions of the terminal propyl molecular fragments, as well as to the rotation of the aromatic rings with respect to the N–C–N axis (Figs. 4
and 11). At 3.70 (5) GPa, the values for the torsion angles N2–C8–C9–C10 of the three symmetry-inequivalent molecules of the used to describe the conformation of type I differ significantly for all the three molecules from the initial value of −50.90 (8)° at ambient pressure, and are equal to −45.14 (2)°, −58.83 (2)° and −63.64 (2)°. The angles between the C1–C6 ring and the (100) plane are 75.40 (2)°, 80.18 (2)° and 58.81 (2)° at 3.70 (5) GPa, differing significantly from the 57.95 (2)° in δ-CPA at ambient conditions.
Thus, the evolution of the crystal structure on increasing pressure and subsequent decompression observed in this series of experiments at laboratory and synchrotron sources is characteristic for the `lock-in' type of phase transition (Iizumi & Gesi, 1983
; Schobinger-Papamantellos et al., 1988
; Gibaud et al., 1991
): at a certain pressure point, Pc, satellite reflections appear instantly, providing evidence that an incommensurately modulated phase is formed, then the value of the modulation vector changes with pressure monotonically, eventually freezing at a value corresponding to a commensurately modulated phase. On decompression, there is no evidence of incommensurately modulated phases. The commensurate supercell structure transforms directly into the original `normal' structure abruptly at a pressure below Pc (Fig. 10
).
| Figure 10 The dependence of the modulation vector q on pressure for data collected at different X-ray sources. ID27 data are shown as black circles (the open circles show the data obtained on releasing pressure), BM01 data are shown as red squares, laboratory Synergy S diffractometer data are shown as green rhombuses. All lines are guides for the eye. |
The formation of the commensurately modulated phase (δ′′HP) was observed at different pressures in different experiments at laboratory and different synchrotron sources, suggesting that the phase transition (δ′inc–δ′′HP) can occur in a broad pressure range. It may be quite challenging to determine precisely the range of pressures at which an incommensurately modulated phase exists because of the technical issues related to different procedures of increasing pressure when using different types of DACs, the difference in the relaxation of the DAC materials, and different times required for data collection and also for transferring a DAC to the diffractometer or a synchrotron station after the DAC has been loaded. Thus, the intermediate incommensurate phase could possibly be metastable or thermodynamically stable in a narrow pressure range. There are examples of other compounds for which very accurate temperature control (±0.05 K) was required in order to detect satellite reflections appearing in this type of transition induced by temperature variation (Gouhara & Kato, 1984
). Further study is needed in order to determine the range of existence of the incommensurately modulated phase precisely.
The documented examples of lock-in structural transformations are related to magnetic transitions, rotation of coordination polyhedra, changes in hydrogen-bond networks and modulation of site occupancies (Iizumi & Gesi, 1983
; Depmeier & Mason, 1983
; Schobinger-Papamantellos et al., 1988
; Gibaud et al., 1991
; Tamura et al., 2000
; Schaper et al., 2001
; Bzowski et al., 2003
; Dey et al., 2022
; Guérin et al., 2023
; Sougoti et al., 2024
; Schönleber, 2024
; Yanda et al., 2024
; Kopylova et al., 2025
). As a recent example of a modulation related to conformational changes, we mention the pressure-induced series of structural transformations in potassium guaninate monohydrate (Gaydamaka & Rashchenko, 2024
), where a phase transition induced by hydrostatic compression results in the formation of a sequence of local molecular structures. Evidence of similar behavior may be found by considering the incommensurately modulated phase described by crenel functions for several atoms (Fig. 6
). This can reveal significant differences in the atomic positions, bond lengths and angles for the neighboring molecules. For δ-CPA these observations may indicate that the abrupt positional shifts of atoms along the modulation vector can lead to the formation of a series of distinct molecular configurations, which upon pressure form the commensurate δ′′HP phase with three symmetry-independent CPA molecules and with a tripled b parameter. Symmetry-independent molecules in the high-pressure commensurate phase δ′′HP and the incommensurately modulated phase δ′inc are shown in Fig. 11
(a) and Fig. 11
(b), respectively. The conformation and atomic coordinates of the symmetry-independent molecules are the same from one unit cell to another in δ′′HP; however, for δ′inc this is not true: a sequence of molecular conformations is observed along the modulation vector.
| Figure 11 The symmetry-independent molecules of CPA for the commensurate δ′′HP phase (a) and the incommensurate δ′inc phase (b). Hydrogen atoms are omitted for clarity. |
The irreproducibility of observing the sequence of incommensurate intermediate phases in different experiments can be explained by the kinetic factors affecting the structural transformation. The rate of pressure increase is able to influence the pressure of a transformation, and, if several competing transformations are possible, the high-pressure phase formed (Boldyreva, 2007
; Fisch et al., 2015
; Zakharov et al., 2015
; Zakharov & Boldyreva, 2019
; Zhang et al., 2021
; Tan & Ma, 2021
; Tumanov et al., 2010
). One can suppose that in the case of a laboratory experiment the incommensurately modulated phase is also formed, but it transforms into the commensurate phase more rapidly than it can be detected, since data collection takes a longer time compared with a synchrotron source. This fact may also explain why the formation of the commensurately modulated high-pressure phase (δ′′HP) was observed at different pressures during synchrotron experiments at BM01 and ID27: 3.51 (5) GPa at BM01 and 4.9 (1) GPa at ID27. If the transition from the incommensurately modulated high-pressure phase δ′inc-CPA to the commensurate high-pressure phase δ′′HP requires time, then it may be critically important how long a sample was kept at pressures exceeding 2.37 (5) GPa – the point of formation of the incommensurately modulated phase. Owing to the shorter exposure time and the use of a membrane high-pressure cell at ID27, each individual experiment required less time than at BM01. This allowed us to perform more measurements in the same amount of time, i.e. at ID27 after the same time since the start of increasing pressure a sample was already at a higher pressure than at BM01. The high-pressure commensurate phase was then observed at higher pressure at ID27 than at BM01.
4. Conclusions
As a result of a series of single-crystal high-pressure diffraction experiments using both laboratory-based and synchrotron X-ray sources, structural transformations in the δ polymorph of chlorpropamide were revealed. A commensurately modulated phase with tripled b parameter and triple the number of conformationally different symmetry-independent molecules, δ′′HP, was formed. This phase can be described in terms of a superstructure; the space group and crystal-structure-forming motif are similar to the original structure. The structural transformation was observed at different pressures depending on the pressure-increasing protocol and the time during which the sample remained under pressure exceeding 2.37 (5) GPa. In the experiments using synchrotron radiation, with fast data collection, it was possible to detect that the phase transition to the commensurately modulated phase occurred through the formation of an intermediate incommensurately modulated phase, δ′inc. This phase formed within the pressure range of 2.03 (5) to 2.37 (5) GPa and could be described in the space group Pbca(0β0)s00 with a modulation vector q = 0.28 (1)b*. With increasing pressure, the modulation vector increased to q = 0.33 (1)b* and remained unchanged thereafter, indicating the formation of the commensurately modulated high-pressure phase. On decompression, the δ′′HP commensurately modulated phase transformed directly to δ-CPA, without the formation of the incommensurately modulated intermediate phase.
The series of structural transformations in δ-CPA with increasing pressure is well in line with the structural transformations in other polymorphs of CPA on variations of pressure and temperature. CPA is prone to conformational polymorphism, which is often related to an increase in the number of symmetry-independent molecules and/or structural modulation (Fig. 12
).
| Figure 12 Schematic representation of the structural transformations of various polymorphs of chlorpropamide on variation of temperature and pressure. Transformations on ball-milling are not included so as not to overload the scheme. These data are summarized in Bouvart et al. (2018 |
Each of the five polymorphs of CPA (α, β, γ, δ and ɛ)2 behaves differently on temperature and pressure variations, giving different low-temperature and high-pressure phases. Moreover, the same polymorph can undergo different structural transformations on hydrostatic compression to the same pressure point, depending on the exact compression–decompression protocol, or the presence of fluids or seeds of other phases. This shows that kinetic factors play a very large role in the and structural transformations of CPA. This means that multiple experiments using different protocols of varying temperature and pressure with different timescales for keeping the sample under selected temperature and pressure conditions are needed in order not to miss new phases and to achieve the most possibly complete control of CPA polymorphism.
This example once again highlights the importance of complementary studies of the same systems using both laboratory and synchrotron facilities. The existence of the intermediate incommensurately modulated phase with variable modulation parameter was shown and its structure successfully solved only using a high-brilliance X-ray beam enabling fast data collection. Even the most advanced laboratory diffractometers would not have been able to provide this information. At the same time, the experiments using laboratory equipment added valuable information on the possibility of obtaining the commensurately modulated phase directly and at different pressures than in the synchrotron experiments that also helped us to understand the difference between the results of the synchrotron experiments at different setups.
The study of δ-chlorpropamide polymorphism under hydrostatic pressure may also serve as a stimulus to study further the phase transitions in CPA involving the formation of superstructures or perhaps even to reconsider results obtained previously. For example, the study of the β phase of chlorpropamide upon cooling (Drebushchak, Drebushchak & Boldyreva, 2011
) revealed the formation of a superstructure. The mechanism of this transition looks similar to that discussed in the present work and is associated with the flexibility of propyl molecular fragments. Considering that the data collection during the low-temperature diffraction experiments described in Drebushchak, Drebushchak & Boldyreva (2011
) took 2–3 days, one may suppose that an unreported intermediate modulated phase with variable modulation parameter may also exist in this case. Moreover, the point detectors used in such experiments for precise unit-cell parameter determination under variable pressure or temperature conditions (like in the work cited above) allow researchers to detect satellite reflections only if the modulation phenomena are already expected, or, at least, if their possibility is specifically tested for. Taking into account these peculiarities of the experiments and the rates of data collection, the possible new modulated phases may be tested for in a fast synchrotron experiment under variable cooling and data collection rates. The new data obtained for this compound, which has already been studied so extensively, could also shed more light on the mechanisms of structural transformations in other organic crystals, helping to understand better the nature of crystal structure response to pressure and temperature. In particular, they may be of interest for the studies of multi-component crystals containing CPA and its salts (Haripriya et al., 2021
; Menon et al., 2024
).
Supporting information
B-IncStrDB reference: V9VuwNzvTbh
contains datablocks global, deltaCPA2.59GPa, deltaCPA2.02GPa, deltaCPA0.26GPa, deltaCPA3.6GPa. DOI: https://doi.org/10.1107/S2052252525011601/yc5053sup1.cif
Structure factors: contains datablock deltaCPA2.59GPa. DOI: https://doi.org/10.1107/S2052252525011601/yc5053deltaCPA2.59GPasup2.hkl
Structure factors: contains datablock deltaCPA2.02GPa. DOI: https://doi.org/10.1107/S2052252525011601/yc5053deltaCPA2.02GPasup3.hkl
Structure factors: contains datablock deltaCPA3.6GPa. DOI: https://doi.org/10.1107/S2052252525011601/yc5053deltaCPA3.6GPasup4.hkl
Structure factors: contains datablock deltaCPA0.26GPa. DOI: https://doi.org/10.1107/S2052252525011601/yc5053deltaCPA0.26GPasup5.hkl
Experimental illustrations, additional supporting figures and crystallographic tables. DOI: https://doi.org/10.1107/S2052252525011601/yc5053sup6.pdf
| C10H0ClN2O3S | F(000) = 1048 |
| Mr = 263.6 | Dx = 1.658 Mg m−3 |
| Orthorhombic, Pbca(0β0)s00† | Synchrotron radiation, λ = 0.7129 Å |
| q = 0.278200b* | Cell parameters from 710 reflections |
| a = 9.234 (2) Å | θ = 2.2–28.2° |
| b = 9.187 (2) Å | µ = 0.55 mm−1 |
| c = 24.895 (5) Å | T = 293 K |
| V = 2111.9 (8) Å3 | Plate, colorless |
| Z = 8 | 0.05 × 0.05 × 0.01 mm |
| † Symmetry operations: (1) x1, x2, x3, x4; (2) −x1+1/2, −x2, x3+1/2, −x4; (3) −x1, x2+1/2, −x3+1/2, x4+1/2; (4) x1+1/2, −x2+1/2, −x3, −x4+1/2; (5) −x1, −x2, −x3, −x4; (6) x1+1/2, x2, −x3+1/2, x4; (7) x1, −x2+1/2, x3+1/2, −x4+1/2; (8) −x1+1/2, x2+1/2, x3, x4+1/2. |
| Dectris-CrysAlisPro-abstract goniometer imported dectris images diffractometer | 3268 independent reflections |
| Radiation source: synchrotron | 1881 reflections with I > 3σ(I) |
| Synchrotron monochromator | Rint = 0.040 |
| Detector resolution: 5.8140 pixels mm-1 | θmax = 28.2°, θmin = 1.8° |
| ω scans | h = −10→10 |
| Absorption correction: multi-scan CrysAlisPro 1.171.43.90 (Rigaku Oxford Diffraction, 2023) Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm. | k = −10→12 |
| Tmin = 0.828, Tmax = 1 | l = −6→9 |
| 8649 measured reflections |
| Refinement on F2 | 67 constraints |
| R[F2 > 2σ(F2)] = 0.300 | H-atom parameters constrained |
| wR(F2) = 0.582 | Weighting scheme based on measured s.u.'s w = 1/[σ2(Fo2) + (0.02P)2] where P = (Fo2 + 2Fc2)/3 |
| S = 9.28 | (Δ/σ)max = 0.046 |
| 3268 reflections | Δρmax = 2.11 e Å−3 |
| 570 parameters | Δρmin = −1.31 e Å−3 |
| 0 restraints |
| x | y | z | Uiso*/Ueq | Occ. (<1) | |
| S1 | 0.644274 | 0.569039 | 0.573519 | 0.0648 | |
| Cl1a | 0.602805 | 1.007038 | 0.766212 | 0.1149 | 0.5584 |
| Cl1b | 0.716063 | 1.00977 | 0.758694 | 0.1004 | 0.4416 |
| O1 | 0.53371 | 0.463289 | 0.583758 | 0.049 | |
| O3 | 0.794426 | 0.7745 | 0.499172 | 0.0667 | |
| O2 | 0.789851 | 0.521837 | 0.561701 | 0.0784 | |
| N2 | 0.578494 | 0.851415 | 0.463697 | 0.0378 | |
| N1 | 0.584428 | 0.662669 | 0.520291 | 0.0488 | |
| C3a | 0.753694 | 0.767438 | 0.64364 | 0.0392* | 0.5584 |
| C3b | 0.799643 | 0.721748 | 0.647226 | 0.0664* | 0.4416 |
| C4a | 0.635378 | 0.691925 | 0.627299 | 0.0443* | 0.5584 |
| C4b | 0.665199 | 0.686688 | 0.625926 | 0.0326* | 0.4416 |
| C8 | 0.635984 | 0.969934 | 0.428328 | 0.0472* | |
| C2a | 0.745411 | 0.859962 | 0.687133 | 0.055* | 0.5584 |
| C2b | 0.81724 | 0.819153 | 0.690414 | 0.0751* | 0.4416 |
| C5a | 0.509455 | 0.708497 | 0.662384 | 0.0738* | 0.5584 |
| C5b | 0.549983 | 0.743551 | 0.651327 | 0.0694* | 0.4416 |
| C1a | 0.619521 | 0.883174 | 0.71521 | 0.0574* | 0.5584 |
| C1b | 0.700229 | 0.878433 | 0.709971 | 0.0617* | 0.4416 |
| C6a | 0.50031 | 0.809207 | 0.698812 | 0.0752* | 0.5584 |
| C6b | 0.562615 | 0.847446 | 0.687264 | 0.0814* | 0.4416 |
| C7 | 0.657516 | 0.768245 | 0.495148 | 0.0349 | |
| C9a | 1.081318 | 0.533966 | 0.633312 | 0.075* | 0.4495 |
| C9b | 0.232214 | 0.595934 | 0.612337 | 0.0622* | 0.5505 |
| C10a | 1.113729 | 0.689242 | 0.659806 | 0.0613* | 0.4495 |
| C10b | 0.666666 | 0.794542 | 0.346524 | 0.0701* | 0.5505 |
| U11 | U22 | U33 | U12 | U13 | U23 | |
| S1 | 0.025921 | 0.033207 | 0.135182 | −0.007455 | 0.002629 | −0.003211 |
| Cl1a | 0.107192 | 0.049069 | 0.188371 | −0.011685 | −0.000791 | −0.020244 |
| Cl1b | 0.109123 | 0.052809 | 0.139281 | 0.008872 | −0.007445 | −0.010635 |
| O1 | 0.040235 | 0.034302 | 0.072604 | −0.009857 | 0.013256 | −0.004347 |
| O3 | 0.024293 | 0.030905 | 0.144946 | 0.000665 | −0.005627 | −0.001466 |
| O2 | 0.021507 | 0.041326 | 0.172467 | 0.004521 | 0.00769 | −0.005948 |
| N2 | 0.041859 | 0.032795 | 0.038741 | −0.004067 | −0.005564 | −0.012898 |
| N1 | 0.027544 | 0.036859 | 0.082088 | −0.00359 | 0.005489 | −0.007725 |
| C7 | 0.028951 | 0.036798 | 0.039038 | −0.003855 | 0.012237 | −0.00681 |
| Average | Minimum | Maximum | |
| S1—O1 | 1.434 (2) | 1.421 (2) | 1.444 (2) |
| S1—O2 | 1.444 (4) | 1.420 (4) | 1.460 (4) |
| S1—C4a | 1.83485 (15) | 1.7762 (3) | 1.9465 (3) |
| S1—C4b | 1.7047 (2) | 1.6724 (4) | 1.7331 (4) |
| O3—C7 | 1.271 (4) | 1.257 (4) | 1.287 (4) |
| N2—C8 | 1.4980 (6) | 1.4846 (7) | 1.5058 (7) |
| N2—C7 | 1.3177 (12) | 1.2787 (14) | 1.3906 (14) |
| N1—C7 | 1.3390 (10) | 1.2682 (12) | 1.4121 (12) |
| C3a—C4a | 1.393 (3) | 1.392 (3) | 1.395 (3) |
| C3a—C2a | 1.379778 (14) | 1.37937 (3) | 1.38004 (3) |
| C3b—C4b | 1.409 (3) | 1.409 (3) | 1.410 (3) |
| C3b—C2b | 1.40924 (6) | 1.40812 (6) | 1.41087 (6) |
| C4a—C5a | 1.487 (3) | 1.481 (3) | 1.494 (3) |
| C4b—C5b | 1.363 (2) | 1.359 (3) | 1.368 (3) |
| C8—C9ai | 1.5460 (4) | 1.3548 (5) | 1.6163 (5) |
| C8—C9bii | 1.4770 (15) | 1.3107 (19) | 1.5181 (19) |
| C2a—C1a | 1.398 (3) | 1.393 (3) | 1.406 (3) |
| C2b—C1b | 1.323 (3) | 1.315 (3) | 1.331 (3) |
| C5a—C6a | 1.298738 (17) | 1.29687 (2) | 1.30130 (2) |
| C5b—C6b | 1.31465 (3) | 1.31168 (5) | 1.31835 (5) |
| C1a—C6a | 1.395 (3) | 1.390 (3) | 1.401 (3) |
| C1b—C6b | 1.443 (3) | 1.437 (4) | 1.449 (4) |
| C9a—C10a | 1.60224 (18) | 1.5335 (5) | 1.7728 (5) |
| C9a—C10bii | 1.7558 (8) | 1.6774 (9) | 1.8366 (9) |
| C9b—C10bi | 1.5360 (6) | 1.4955 (9) | 1.6474 (9) |
| C10a—C10bii | 0.4145 (10) | 0.3798 (11) | 0.4285 (11) |
| O1—S1—O2 | 119.795 (13) | 118.016 (14) | 121.440 (13) |
| O1—S1—C4a | 102.124 (11) | 97.366 (12) | 111.441 (11) |
| O1—S1—C4b | 116.413 (9) | 108.428 (11) | 120.389 (9) |
| O2—S1—C4a | 115.931 (4) | 92.539 (7) | 125.691 (2) |
| O2—S1—C4b | 98.904 (7) | 90.663 (8) | 118.323 (3) |
| C8—N2—C7 | 125.012 (12) | 120.142 (13) | 129.366 (11) |
| C4a—C3a—C2a | 119.984 (8) | 119.828 (9) | 120.118 (8) |
| C4b—C3b—C2b | 122.703 (5) | 122.580 (5) | 122.797 (7) |
| S1—C4a—C3a | 114.985 (8) | 109.944 (10) | 119.385 (5) |
| S1—C4a—C5a | 126.981 (7) | 121.343 (12) | 129.987 (4) |
| C3a—C4a—C5a | 115.497 (12) | 115.305 (14) | 115.739 (8) |
| S1—C4b—C3b | 123.970 (4) | 106.279 (8) | 131.2539 (19) |
| S1—C4b—C5b | 118.413 (10) | 111.706 (11) | 135.759 (6) |
| C3b—C4b—C5b | 117.030 (13) | 116.952 (12) | 117.109 (12) |
| N2—C8—C9ai | 113.373 (10) | 110.992 (10) | 117.115 (8) |
| N2—C8—C9bii | 110.692 (13) | 107.496 (13) | 113.563 (12) |
| C3a—C2a—C1a | 121.814 (6) | 121.412 (5) | 122.164 (9) |
| C3b—C2b—C1b | 116.222 (9) | 115.802 (8) | 116.599 (9) |
| C4a—C5a—C6a | 121.981 (7) | 121.820 (9) | 122.098 (6) |
| C4b—C5b—C6b | 121.236 (8) | 120.541 (7) | 121.782 (9) |
| C2a—C1a—C6a | 118.611 (12) | 118.521 (9) | 118.781 (13) |
| C2b—C1b—C6b | 121.572 (12) | 121.389 (12) | 121.785 (11) |
| C5a—C6a—C1a | 120.391 (8) | 119.973 (8) | 120.700 (10) |
| C5b—C6b—C1b | 119.627 (5) | 119.440 (6) | 119.795 (7) |
| O3—C7—N2 | 125.023 (7) | 121.155 (6) | 130.771 (7) |
| O3—C7—N1 | 119.862 (7) | 115.737 (7) | 123.180 (7) |
| N2—C7—N1 | 114.649 (13) | 113.450 (14) | 115.665 (13) |
| C8ii—C9a—C10a | 113.218 (6) | 108.609 (7) | 116.644 (6) |
| C8ii—C9a—C10bii | 105.668 (5) | 104.519 (5) | 107.143 (7) |
| C10a—C9a—C10bii | 13.349 (3) | 12.645 (3) | 13.746 (3) |
| C8i—C9b—C10bi | 121.759 (12) | 113.809 (13) | 132.341 (8) |
| C9a—C10a—C10bii | 102.073 (6) | 100.666 (8) | 103.689 (4) |
| Symmetry codes: (i) x1−1/2, −x2+3/2, −x3+1, −x4+1/2; (ii) x1+1/2, −x2+3/2, −x3+1, −x4+1/2. |
| C10H13ClN2O3S | F(000) = 1152 |
| Mr = 276.7 | Dx = 1.708 Mg m−3 |
| Orthorhombic, Pbca | Synchrotron radiation, λ = 0.7129 Å |
| Hall symbol: -P -2xab;-2ybc;-2zac | Cell parameters from 786 reflections |
| a = 9.135 (2) Å | θ = 3.2–24.9° |
| b = 9.559 (2) Å | µ = 0.54 mm−1 |
| c = 24.658 (5) Å | T = 293 K |
| V = 2153.1 (8) Å3 | Plate, colorless |
| Z = 8 | 0.15 × 0.05 × 0.02 mm |
| Dectris-CrysAlisPro-abstract goniometer imported dectris images diffractometer | 454 independent reflections |
| Radiation source: synchrotron | 297 reflections with I > 3σ(I) |
| Synchrotron monochromator | Rint = 0.026 |
| ω scans | θmax = 28.4°, θmin = 3.2° |
| Absorption correction: multi-scan CrysAlisPro 1.171.38.41 (Rigaku Oxford Diffraction, 2015) Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm. | h = −8→12 |
| Tmin = 0.232, Tmax = 1 | k = −9→9 |
| 1494 measured reflections | l = −8→6 |
| Refinement on F2 | 100 constraints |
| R[F2 > 2σ(F2)] = 0.060 | H-atom parameters constrained |
| wR(F2) = 0.127 | Weighting scheme based on measured s.u.'s w = 1/[σ2(Fo2) + (0.02P)2] where P = (Fo2 + 2Fc2)/3 |
| S = 3.88 | (Δ/σ)max = 0.040 |
| 454 reflections | Δρmax = 0.19 e Å−3 |
| 96 parameters | Δρmin = −0.17 e Å−3 |
| 1 restraint |
| x | y | z | Uiso*/Ueq | ||
| S1 | 0.63707 (18) | 0.5755 (2) | 0.5719 (2) | 0.044 (4) | |
| Cl1 | 0.6696 (3) | 1.0042 (3) | 0.7580 (3) | 0.169 (8) | |
| O1 | 0.5220 (4) | 0.4770 (5) | 0.5790 (5) | 0.057 (8) | |
| O3 | 0.7950 (4) | 0.7691 (5) | 0.4882 (6) | 0.0562 (15)* | |
| O2 | 0.7784 (4) | 0.5191 (5) | 0.5578 (5) | 0.0590 (15)* | |
| N2 | 1.0786 (6) | 0.6408 (6) | 0.5317 (7) | 0.093 (12) | |
| N1 | 0.5773 (5) | 0.6682 (6) | 0.5203 (7) | 0.082 (11) | |
| C5 | 0.7799 (8) | 0.7665 (9) | 0.6402 (4) | 0.078 (7) | |
| C4 | 0.6506 (8) | 0.6824 (9) | 0.6298 (4) | 0.078 (7) | |
| C8 | 1.1364 (12) | 0.5361 (16) | 0.5649 (9) | 0.079 (7) | |
| C6 | 0.7852 (8) | 0.8542 (8) | 0.6742 (4) | 0.078 (7) | |
| C3 | 0.5329 (8) | 0.6967 (9) | 0.6562 (4) | 0.078 (7) | |
| C1 | 0.6604 (7) | 0.8735 (8) | 0.7039 (4) | 0.078 (7) | |
| C2 | 0.5419 (8) | 0.7932 (8) | 0.6929 (4) | 0.078 (7) | |
| C7 | 0.6563 (9) | 0.7682 (9) | 0.4911 (9) | 0.078 (7) | |
| C9 | 1.1197 (13) | 0.5560 (15) | 0.6221 (10) | 0.079 (7) | |
| C10 | 1.1433 (9) | 0.7146 (10) | 0.6380 (12) | 0.079 (7) | |
| H1N2 | 0.98443 | 0.643081 | 0.52655 | 0.1114* | |
| H1N1 | 0.487379 | 0.653534 | 0.510093 | 0.0983* | |
| H1C10 | 1.193953 | 0.719888 | 0.672081 | 0.0947* | |
| H2C10 | 1.20027 | 0.760266 | 0.610506 | 0.0947* | |
| H3C10 | 1.049972 | 0.760089 | 0.641194 | 0.0947* | |
| H1C3 | 0.446511 | 0.64203 | 0.649756 | 0.0941* | |
| H1C2 | 0.456043 | 0.8094 | 0.714471 | 0.0941* | |
| H1C6 | 0.871999 | 0.908393 | 0.680557 | 0.0941* | |
| H1C5 | 0.865454 | 0.750317 | 0.618498 | 0.0941* | |
| H1C8 | 1.09565 | 0.447376 | 0.554738 | 0.0947* | |
| H2C8 | 1.238078 | 0.522902 | 0.556503 | 0.0947* | |
| H1C9 | 1.189527 | 0.498908 | 0.640993 | 0.0947* | |
| H2C9 | 1.02352 | 0.526833 | 0.632897 | 0.0947* |
| U11 | U22 | U33 | U12 | U13 | U23 | |
| S1 | 0.0563 (13) | 0.0601 (13) | 0.015 (10) | −0.0032 (8) | 0.0074 (16) | 0.003 (2) |
| Cl1 | 0.141 (2) | 0.076 (2) | 0.29 (2) | 0.0054 (13) | −0.003 (3) | −0.021 (3) |
| O1 | 0.055 (3) | 0.060 (3) | 0.06 (2) | −0.008 (2) | −0.008 (4) | −0.027 (5) |
| N2 | 0.059 (3) | 0.049 (4) | 0.17 (4) | −0.008 (3) | −0.022 (6) | −0.022 (6) |
| N1 | 0.038 (2) | 0.055 (4) | 0.15 (3) | −0.006 (2) | −0.012 (5) | 0.020 (6) |
| C5 | 0.0732 (19) | 0.059 (2) | 0.10 (2) | −0.0030 (16) | 0.030 (3) | 0.006 (4) |
| C4 | 0.0732 (19) | 0.059 (2) | 0.10 (2) | −0.0030 (16) | 0.030 (3) | 0.006 (4) |
| C8 | 0.079 (3) | 0.088 (4) | 0.07 (2) | 0.002 (2) | −0.018 (7) | 0.057 (9) |
| C6 | 0.0732 (19) | 0.059 (2) | 0.10 (2) | −0.0030 (16) | 0.030 (3) | 0.006 (4) |
| C3 | 0.0732 (19) | 0.059 (2) | 0.10 (2) | −0.0030 (16) | 0.030 (3) | 0.006 (4) |
| C1 | 0.0732 (19) | 0.059 (2) | 0.10 (2) | −0.0030 (16) | 0.030 (3) | 0.006 (4) |
| C2 | 0.0732 (19) | 0.059 (2) | 0.10 (2) | −0.0030 (16) | 0.030 (3) | 0.006 (4) |
| C7 | 0.0732 (19) | 0.059 (2) | 0.10 (2) | −0.0030 (16) | 0.030 (3) | 0.006 (4) |
| C9 | 0.079 (3) | 0.088 (4) | 0.07 (2) | 0.002 (2) | −0.018 (7) | 0.057 (9) |
| C10 | 0.079 (3) | 0.088 (4) | 0.07 (2) | 0.002 (2) | −0.018 (7) | 0.057 (9) |
| S1—O1 | 1.422 (5) | C8—H1C8 | 0.96 |
| S1—O2 | 1.442 (5) | C8—H2C8 | 0.96 |
| S1—C4 | 1.758 (11) | C6—C1 | 1.367 (11) |
| O3—C7 | 1.269 (9) | C6—H1C6 | 0.96 |
| N2—C8 | 1.40 (2) | C3—C2 | 1.295 (13) |
| N2—C7i | 1.256 (16) | C3—H1C3 | 0.96 |
| N2—H1N2 | 0.87 | C1—C2 | 1.354 (10) |
| N1—C7 | 1.397 (17) | C2—H1C2 | 0.96 |
| N1—H1N1 | 0.87 | C9—C10 | 1.582 (19) |
| C5—C4 | 1.452 (11) | C9—H1C9 | 0.96 |
| C5—C6 | 1.187 (13) | C9—H2C9 | 0.96 |
| C5—H1C5 | 0.96 | C10—H1C10 | 0.96 |
| C4—C3 | 1.264 (12) | C10—H2C10 | 0.96 |
| C8—C9 | 1.43 (3) | C10—H3C10 | 0.96 |
| O1—S1—O2 | 116.3 (3) | C4—C3—C2 | 112.6 (8) |
| O1—S1—C4 | 109.7 (6) | C4—C3—H1C3 | 123.72 |
| O2—S1—C4 | 110.5 (5) | C2—C3—H1C3 | 123.72 |
| C8—N2—C7i | 123.1 (9) | C6—C1—C2 | 118.8 (8) |
| C8—N2—H1N2 | 118.47 | C3—C2—C1 | 126.5 (8) |
| C7i—N2—H1N2 | 118.48 | C3—C2—H1C2 | 116.77 |
| C7—N1—H1N1 | 116.73 | C1—C2—H1C2 | 116.77 |
| C4—C5—C6 | 123.3 (8) | O3—C7—N2ii | 122.3 (12) |
| C4—C5—H1C5 | 118.33 | O3—C7—N1 | 123.4 (11) |
| C6—C5—H1C5 | 118.33 | N2ii—C7—N1 | 114.3 (8) |
| S1—C4—C5 | 121.5 (7) | C8—C9—C10 | 111.0 (17) |
| S1—C4—C3 | 114.9 (7) | C8—C9—H1C9 | 109.47 |
| C5—C4—C3 | 122.7 (9) | C8—C9—H2C9 | 109.47 |
| N2—C8—C9 | 116.3 (14) | C10—C9—H1C9 | 109.47 |
| N2—C8—H1C8 | 109.47 | C10—C9—H2C9 | 109.47 |
| N2—C8—H2C8 | 109.47 | H1C9—C9—H2C9 | 107.93 |
| C9—C8—H1C8 | 109.47 | C9—C10—H1C10 | 109.47 |
| C9—C8—H2C8 | 109.47 | C9—C10—H2C10 | 109.47 |
| H1C8—C8—H2C8 | 101.66 | C9—C10—H3C10 | 109.47 |
| C5—C6—C1 | 116.1 (8) | H1C10—C10—H2C10 | 109.47 |
| C5—C6—H1C6 | 121.96 | H1C10—C10—H3C10 | 109.47 |
| C1—C6—H1C6 | 121.96 | H2C10—C10—H3C10 | 109.47 |
| Symmetry codes: (i) x+1/2, −y+3/2, −z+1; (ii) x−1/2, −y+3/2, −z+1. |
| D—H···A | D—H | H···A | D···A | D—H···A |
| N2—H1N2···O3 | 0.87 | 2.31 | 3.060 (10) | 144.40 |
| N2—H1N2···O2 | 0.87 | 2.35 | 3.048 (8) | 136.94 |
| N1—H1N1···O3ii | 0.87 | 1.91 | 2.655 (6) | 143.19 |
| C10—H3C10···C5 | 0.96 | 2.47 | 3.357 (11) | 153.91 |
| Symmetry code: (ii) x−1/2, −y+3/2, −z+1. |
| C10H13ClN2O3S | Dx = 1.521 Mg m−3 |
| Mr = 276.73 | Synchrotron radiation, λ = 0.37380 Å |
| Orthorhombic, Pbca | Cell parameters from 1429 reflections |
| a = 9.2627 (4) Å | θ = 3.1–13.0° |
| b = 10.0363 (4) Å | µ = 0.10 mm−1 |
| c = 26.006 (15) Å | T = 293 K |
| V = 2417.6 (14) Å3 | Plate, colorless |
| Z = 8 | 0.1 × 0.05 × 0.01 mm |
| F(000) = 1152 |
| MAR-CrysAlisPro-abstract goniometer: imported MAR images diffractometer | 558 reflections with I > 2σ(I) |
| Radiation source: synchrotron | Rint = 0.103 |
| Synchrotron monochromator | θmax = 13.2°, θmin = 2.7° |
| Absorption correction: multi-scan CrysAlisPro 1.171.39.46 (Rigaku Oxford Diffraction, 2018) Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm. | h = −11→11 |
| Tmin = 0.470, Tmax = 1.000 | k = −12→12 |
| 3480 measured reflections | l = −10→10 |
| 752 independent reflections |
| Refinement on F2 | 63 restraints |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| R[F2 > 2σ(F2)] = 0.060 | H-atom parameters constrained |
| wR(F2) = 0.152 | w = 1/[σ2(Fo2) + (0.0401P)2 + 3.1051P] where P = (Fo2 + 2Fc2)/3 |
| S = 1.04 | (Δ/σ)max < 0.001 |
| 752 reflections | Δρmax = 0.14 e Å−3 |
| 155 parameters | Δρmin = −0.15 e Å−3 |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| x | y | z | Uiso*/Ueq | ||
| S1 | 0.63178 (14) | 0.41000 (12) | 0.57063 (18) | 0.048 (3) | |
| N1 | 0.5719 (5) | 0.3177 (4) | 0.5249 (6) | 0.036 (11) | |
| H1 | 0.482328 | 0.326188 | 0.516924 | 0.043* | |
| C9 | 0.6054 (14) | 0.0665 (14) | 0.380 (2) | 0.075 (19) | |
| H9A | 0.653650 | −0.001770 | 0.360299 | 0.090* | |
| H9B | 0.502347 | 0.055036 | 0.375542 | 0.090* | |
| Cl1 | 0.6781 (4) | 0.0315 (3) | 0.7589 (4) | 0.103 (7) | |
| N2 | 0.5739 (5) | 0.1458 (5) | 0.4667 (7) | 0.078 (13) | |
| H2 | 0.481610 | 0.155261 | 0.465931 | 0.093* | |
| C10 | 0.6467 (14) | 0.1969 (12) | 0.3599 (18) | 0.11 (2) | |
| H10A | 0.611875 | 0.205515 | 0.325291 | 0.161* | |
| H10B | 0.749965 | 0.205039 | 0.360144 | 0.161* | |
| H10C | 0.605300 | 0.265812 | 0.380850 | 0.161* | |
| O2 | 0.5191 (4) | 0.5017 (3) | 0.5801 (5) | 0.076 (9) | |
| O3 | 0.7841 (4) | 0.2247 (4) | 0.4989 (5) | 0.057 (10) | |
| O1 | 0.7718 (4) | 0.4563 (3) | 0.5581 (5) | 0.056 (9) | |
| C2 | 0.7736 (9) | 0.1428 (7) | 0.6736 (10) | 0.067 (8) | |
| H2A | 0.854235 | 0.088798 | 0.678054 | 0.080* | |
| C3 | 0.7654 (7) | 0.2248 (6) | 0.6300 (10) | 0.058 (8) | |
| H3 | 0.838668 | 0.224478 | 0.605600 | 0.069* | |
| C7 | 0.6518 (6) | 0.2259 (5) | 0.4973 (8) | 0.049 (14) | |
| C1 | 0.6676 (10) | 0.1400 (6) | 0.7093 (10) | 0.068 (8) | |
| C8 | 0.6391 (11) | 0.0443 (9) | 0.4351 (13) | 0.053 (19) | |
| H8A | 0.603678 | −0.042541 | 0.445507 | 0.063* | |
| H8B | 0.742959 | 0.045446 | 0.439937 | 0.063* | |
| C4 | 0.6461 (6) | 0.3061 (5) | 0.6242 (8) | 0.049 (8) | |
| C5 | 0.5405 (8) | 0.3060 (7) | 0.6628 (10) | 0.063 (8) | |
| H5 | 0.465140 | 0.367224 | 0.661784 | 0.076* | |
| C6 | 0.5484 (9) | 0.2231 (8) | 0.6985 (11) | 0.075 (8) | |
| H6 | 0.468471 | 0.215394 | 0.719876 | 0.090* |
| U11 | U22 | U33 | U12 | U13 | U23 | |
| S1 | 0.0344 (8) | 0.0434 (8) | 0.065 (11) | 0.0022 (5) | −0.0030 (15) | −0.0022 (13) |
| N1 | 0.034 (2) | 0.060 (3) | 0.01 (4) | 0.0076 (19) | 0.004 (5) | −0.012 (5) |
| C9 | 0.087 (6) | 0.105 (6) | 0.03 (6) | 0.009 (6) | −0.004 (10) | −0.019 (10) |
| Cl1 | 0.160 (3) | 0.105 (2) | 0.04 (2) | −0.0078 (16) | −0.003 (5) | 0.030 (3) |
| N2 | 0.037 (2) | 0.053 (3) | 0.14 (4) | 0.001 (2) | 0.001 (6) | −0.008 (5) |
| C10 | 0.128 (8) | 0.146 (8) | 0.05 (6) | 0.043 (7) | 0.004 (14) | 0.035 (11) |
| O2 | 0.041 (2) | 0.050 (2) | 0.14 (3) | 0.0087 (16) | −0.016 (4) | −0.006 (4) |
| O3 | 0.033 (2) | 0.059 (2) | 0.08 (3) | 0.0013 (14) | 0.001 (4) | −0.007 (4) |
| O1 | 0.039 (2) | 0.053 (2) | 0.07 (3) | −0.0093 (15) | −0.007 (4) | 0.003 (4) |
| C2 | 0.075 (4) | 0.059 (3) | 0.07 (2) | 0.012 (3) | 0.004 (6) | 0.001 (5) |
| C3 | 0.054 (3) | 0.056 (3) | 0.06 (2) | 0.011 (2) | 0.007 (6) | −0.002 (5) |
| C7 | 0.034 (3) | 0.046 (3) | 0.07 (4) | 0.003 (2) | 0.000 (6) | 0.011 (5) |
| C1 | 0.077 (4) | 0.058 (3) | 0.07 (2) | −0.012 (3) | 0.003 (6) | 0.007 (5) |
| C8 | 0.063 (4) | 0.064 (4) | 0.03 (6) | 0.012 (3) | −0.010 (9) | −0.015 (8) |
| C4 | 0.039 (3) | 0.047 (3) | 0.06 (2) | 0.000 (2) | 0.003 (5) | −0.007 (5) |
| C5 | 0.052 (3) | 0.073 (4) | 0.07 (2) | 0.004 (3) | 0.008 (6) | −0.003 (6) |
| C6 | 0.069 (4) | 0.088 (4) | 0.07 (3) | −0.005 (3) | 0.015 (6) | 0.005 (6) |
| S1—O2 | 1.413 (4) | C10—H10B | 0.9600 |
| S1—O1 | 1.416 (5) | C10—H10C | 0.9600 |
| S1—N1 | 1.605 (12) | O3—C7 | 1.227 (7) |
| S1—C4 | 1.745 (17) | C2—C1 | 1.35 (3) |
| N1—C7 | 1.383 (14) | C2—C3 | 1.40 (3) |
| N1—H1 | 0.8600 | C2—H2A | 0.9300 |
| C9—C10 | 1.46 (2) | C3—C4 | 1.381 (9) |
| C9—C8 | 1.47 (7) | C3—H3 | 0.9300 |
| C9—H9A | 0.9700 | C1—C6 | 1.412 (13) |
| C9—H9B | 0.9700 | C8—H8A | 0.9700 |
| Cl1—C1 | 1.69 (2) | C8—H8B | 0.9700 |
| N2—C7 | 1.341 (16) | C4—C5 | 1.40 (2) |
| N2—C8 | 1.44 (3) | C5—C6 | 1.25 (3) |
| N2—H2 | 0.8600 | C5—H5 | 0.9300 |
| C10—H10A | 0.9600 | C6—H6 | 0.9300 |
| O2—S1—O1 | 120.2 (2) | C3—C2—H2A | 119.1 |
| O2—S1—N1 | 104.5 (5) | C4—C3—C2 | 118.6 (15) |
| O1—S1—N1 | 109.5 (6) | C4—C3—H3 | 120.7 |
| O2—S1—C4 | 107.8 (6) | C2—C3—H3 | 120.7 |
| O1—S1—C4 | 108.1 (5) | O3—C7—N2 | 123.5 (11) |
| N1—S1—C4 | 105.8 (6) | O3—C7—N1 | 121.5 (11) |
| C7—N1—S1 | 125.8 (6) | N2—C7—N1 | 114.8 (6) |
| C7—N1—H1 | 117.1 | C2—C1—C6 | 114.7 (17) |
| S1—N1—H1 | 117.1 | C2—C1—Cl1 | 119.7 (8) |
| C10—C9—C8 | 116 (3) | C6—C1—Cl1 | 125.3 (14) |
| C10—C9—H9A | 108.4 | N2—C8—C9 | 110.8 (13) |
| C8—C9—H9A | 108.4 | N2—C8—H8A | 109.5 |
| C10—C9—H9B | 108.4 | C9—C8—H8A | 109.5 |
| C8—C9—H9B | 108.4 | N2—C8—H8B | 109.5 |
| H9A—C9—H9B | 107.5 | C9—C8—H8B | 109.5 |
| C7—N2—C8 | 122.4 (7) | H8A—C8—H8B | 108.1 |
| C7—N2—H2 | 118.8 | C3—C4—C5 | 118.6 (16) |
| C8—N2—H2 | 118.8 | C3—C4—S1 | 120.1 (14) |
| C9—C10—H10A | 109.5 | C5—C4—S1 | 121.2 (7) |
| C9—C10—H10B | 109.5 | C6—C5—C4 | 119.4 (10) |
| H10A—C10—H10B | 109.5 | C6—C5—H5 | 120.3 |
| C9—C10—H10C | 109.5 | C4—C5—H5 | 120.3 |
| H10A—C10—H10C | 109.5 | C5—C6—C1 | 126.0 (16) |
| H10B—C10—H10C | 109.5 | C5—C6—H6 | 117.0 |
| C1—C2—C3 | 121.9 (10) | C1—C6—H6 | 117.0 |
| C1—C2—H2A | 119.1 | ||
| O2—S1—N1—C7 | 169.9 (11) | C2—C3—C4—S1 | 179.8 (10) |
| O1—S1—N1—C7 | 39.9 (12) | O2—S1—C4—C3 | −166.9 (10) |
| C4—S1—N1—C7 | −76.4 (11) | O1—S1—C4—C3 | −35.5 (12) |
| C1—C2—C3—C4 | 1 (2) | N1—S1—C4—C3 | 81.7 (10) |
| C8—N2—C7—O3 | 4 (2) | O2—S1—C4—C5 | 11.0 (11) |
| C8—N2—C7—N1 | 179.9 (16) | O1—S1—C4—C5 | 142.4 (10) |
| S1—N1—C7—O3 | −14 (2) | N1—S1—C4—C5 | −100.3 (10) |
| S1—N1—C7—N2 | 169.8 (10) | C3—C4—C5—C6 | −8 (2) |
| C3—C2—C1—C6 | 1 (2) | S1—C4—C5—C6 | 174.4 (13) |
| C3—C2—C1—Cl1 | 175.8 (11) | C4—C5—C6—C1 | 11 (3) |
| C7—N2—C8—C9 | −120.9 (16) | C2—C1—C6—C5 | −8 (2) |
| C10—C9—C8—N2 | 56 (2) | Cl1—C1—C6—C5 | 178.1 (16) |
| C2—C3—C4—C5 | 1.9 (18) |
| C10H13ClN2O3S | F(000) = 3456 |
| Mr = 276.7 | Dx = 1.811 Mg m−3 |
| Orthorhombic, Pbca | Mo Kα radiation, λ = 0.71073 Å |
| Hall symbol: -P -2xab;-2ybc;-2zac | Cell parameters from 2878 reflections |
| a = 9.170 (2) Å | θ = 2.8–26.1° |
| b = 27.154 (5) Å | µ = 0.58 mm−1 |
| c = 24.461 (5) Å | T = 300 K |
| V = 6091 (2) Å3 | Plate, colorless |
| Z = 24 | 0.2 × 0.08 × 0.05 mm |
| XtaLAB Synergy, Dualflex, Pilatus 300K diffractometer | 2028 independent reflections |
| Radiation source: X-ray tube | 1164 reflections with I > 3σ(I) |
| Mirror monochromator | Rint = 0.092 |
| Detector resolution: 5.8140 pixels mm-1 | θmax = 25.2°, θmin = 2.5° |
| ω scans | h = −10→10 |
| Absorption correction: gaussian CrysAlisPro 1.171.40.33a (Rigaku Oxford Diffraction, 2018) Numerical absorption correction based on gaussian integration over a multifaceted crystal model Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm. | k = −32→24 |
| Tmin = 0.923, Tmax = 1.000 | l = −8→8 |
| 12961 measured reflections |
| Refinement on F2 | 366 constraints |
| R[F2 > 2σ(F2)] = 0.057 | H-atom parameters constrained |
| wR(F2) = 0.112 | Weighting scheme based on measured s.u.'s w = 1/[σ2(Fo2) + (0.02P)2] where P = (Fo2 + 2Fc2)/3 |
| S = 1.99 | (Δ/σ)max = 0.020 |
| 2028 reflections | Δρmax = 0.41 e Å−3 |
| 235 parameters | Δρmin = −0.60 e Å−3 |
| 0 restraints |
| x | y | z | Uiso*/Ueq | ||
| S1b | 0.35270 (19) | 0.51955 (6) | 0.5810 (2) | 0.027 (4) | |
| S1a | 0.13631 (18) | 0.69509 (6) | 0.5699 (2) | 0.024 (3) | |
| S1c | 0.16039 (18) | 0.34961 (6) | 0.5758 (2) | 0.023 (3) | |
| Cl1c | 0.24044 (19) | 0.50380 (7) | 0.7591 (2) | 0.044 (4) | |
| Cl1b | 0.3864 (2) | 0.66950 (7) | 0.7730 (2) | 0.050 (4) | |
| Cl1a | 0.0586 (2) | 0.83402 (7) | 0.7697 (2) | 0.050 (4) | |
| O3b | 0.2082 (4) | 0.59259 (15) | 0.5065 (6) | 0.033 (3) | |
| O2a | 0.0286 (4) | 0.65803 (15) | 0.5788 (5) | 0.033 (3) | |
| O1b | 0.4611 (4) | 0.48194 (15) | 0.5900 (5) | 0.033 (3) | |
| O1a | 0.2871 (4) | 0.68242 (15) | 0.5661 (5) | 0.033 (3) | |
| O2c | 0.0511 (4) | 0.31449 (15) | 0.5904 (5) | 0.033 (3) | |
| O3c | 0.2926 (5) | 0.42467 (15) | 0.5044 (5) | 0.033 (3) | |
| O2b | 0.2045 (4) | 0.50713 (14) | 0.5721 (5) | 0.033 (3) | |
| O3a | 0.2973 (4) | 0.75726 (15) | 0.4868 (5) | 0.033 (3) | |
| O1c | 0.3035 (4) | 0.33293 (15) | 0.5630 (5) | 0.033 (3) | |
| N2b | 0.4234 (6) | 0.61176 (19) | 0.4664 (6) | 0.033 (4) | |
| N2c | 0.0738 (6) | 0.44866 (19) | 0.4715 (6) | 0.033 (4) | |
| N1a | 0.0829 (6) | 0.7236 (2) | 0.5171 (6) | 0.033 (4) | |
| N1b | 0.4160 (6) | 0.5503 (2) | 0.5288 (6) | 0.033 (4) | |
| C8b | 0.3627 (7) | 0.6513 (3) | 0.4338 (8) | 0.041 (3) | |
| N1c | 0.0881 (6) | 0.38100 (19) | 0.5257 (6) | 0.033 (4) | |
| C6a | −0.0394 (8) | 0.7840 (2) | 0.6831 (8) | 0.041 (5) | |
| C8a | 0.1463 (8) | 0.8268 (3) | 0.4242 (9) | 0.041 (3) | |
| N2a | 0.0843 (6) | 0.78915 (19) | 0.4595 (6) | 0.049 (11) | |
| C10b | 0.3155 (8) | 0.6001 (3) | 0.3488 (7) | 0.041 (3) | |
| C8c | 0.1312 (7) | 0.4875 (3) | 0.4369 (8) | 0.041 (3) | |
| C5b | 0.2418 (7) | 0.5931 (2) | 0.6430 (8) | 0.040 (5) | |
| C7b | 0.3397 (7) | 0.5874 (2) | 0.5019 (8) | 0.017 (2)* | |
| C6b | 0.2513 (7) | 0.6256 (2) | 0.6873 (7) | 0.040 (5) | |
| C1a | 0.0785 (7) | 0.7951 (3) | 0.7163 (8) | 0.041 (5) | |
| C5a | −0.0206 (7) | 0.7539 (3) | 0.6366 (8) | 0.041 (5) | |
| C3a | 0.2368 (7) | 0.7476 (3) | 0.6565 (8) | 0.041 (5) | |
| C4b | 0.3566 (7) | 0.5597 (2) | 0.6396 (8) | 0.040 (5) | |
| C1c | 0.2170 (7) | 0.4595 (2) | 0.7090 (8) | 0.033 (6) | |
| C7c | 0.1595 (7) | 0.4197 (2) | 0.5005 (8) | 0.020 (2)* | |
| C5c | 0.0644 (7) | 0.4207 (2) | 0.6457 (8) | 0.033 (6) | |
| C9b | 0.2566 (8) | 0.6338 (3) | 0.3911 (7) | 0.041 (3) | |
| C2c | 0.3338 (7) | 0.4313 (2) | 0.6938 (7) | 0.033 (6) | |
| C3c | 0.3158 (7) | 0.3981 (2) | 0.6532 (7) | 0.033 (6) | |
| C6c | 0.0831 (7) | 0.4546 (2) | 0.6851 (7) | 0.033 (6) | |
| C2b | 0.4777 (7) | 0.5891 (2) | 0.7188 (7) | 0.040 (5) | |
| C10c | 0.1427 (7) | 0.4312 (2) | 0.3544 (8) | 0.041 (3) | |
| C7a | 0.1642 (7) | 0.7582 (2) | 0.4872 (8) | 0.020 (2)* | |
| C9c | 0.2176 (8) | 0.4692 (2) | 0.3913 (8) | 0.041 (3) | |
| C1b | 0.3680 (7) | 0.6250 (2) | 0.7229 (8) | 0.040 (5) | |
| C2a | 0.2171 (8) | 0.7777 (3) | 0.7014 (8) | 0.041 (5) | |
| C3b | 0.4690 (7) | 0.5570 (2) | 0.6739 (8) | 0.040 (5) | |
| C4c | 0.1812 (7) | 0.3926 (2) | 0.6275 (8) | 0.033 (6) | |
| C4a | 0.1173 (8) | 0.7358 (3) | 0.6252 (9) | 0.041 (5) | |
| H1N1 | 0.514802 | 0.603839 | 0.462804 | 0.0391* | |
| H1N3 | −0.004825 | 0.71722 | 0.505562 | 0.0391* | |
| H1N4 | 0.502863 | 0.543001 | 0.517066 | 0.0391* | |
| H1C1 | 0.440318 | 0.669213 | 0.416472 | 0.0493* | |
| H2C1 | 0.315449 | 0.674699 | 0.457311 | 0.0493* | |
| H1N5 | 0.001213 | 0.373068 | 0.514395 | 0.0391* | |
| H1C2 | −0.012066 | 0.834017 | 0.365661 | 0.0493* | |
| H1C4 | 0.23812 | 0.580108 | 0.334536 | 0.0493* | |
| H2C4 | 0.357742 | 0.619133 | 0.319716 | 0.0493* | |
| H3C4 | 0.388892 | 0.57941 | 0.364734 | 0.0493* | |
| H1C10 | −0.101642 | 0.746252 | 0.613226 | 0.0489* | |
| H1C15 | −0.030441 | 0.415925 | 0.63002 | 0.0399* | |
| H1C17 | 0.211853 | 0.661663 | 0.373755 | 0.0493* | |
| H2C17 | 0.174462 | 0.618593 | 0.408635 | 0.0493* | |
| H1C19 | 0.426509 | 0.435092 | 0.711554 | 0.0399* | |
| H1C20 | 0.396659 | 0.37809 | 0.64187 | 0.0399* | |
| H1C28 | 0.544461 | 0.533147 | 0.667841 | 0.0482* | |
| H1C22 | 0.554504 | 0.586538 | 0.74537 | 0.0482* | |
| H1C8 | 0.174386 | 0.648985 | 0.693005 | 0.0482* | |
| H1C21 | 0.003304 | 0.475095 | 0.696332 | 0.0399* | |
| H1C11 | 0.331809 | 0.735235 | 0.647405 | 0.0489* | |
| H1C27 | 0.300166 | 0.786983 | 0.723004 | 0.0489* | |
| H1C5b | 0.162856 | 0.593788 | 0.617277 | 0.0482* | |
| C9a | 0.0896 (8) | 0.8256 (3) | 0.3659 (9) | 0.041 (3) | |
| C10a | 0.1100 (10) | 0.7754 (2) | 0.3406 (8) | 0.041 (3) | |
| H1N2 | −0.020081 | 0.444379 | 0.473212 | 0.0391* | |
| H1C5 | 0.189132 | 0.509551 | 0.458458 | 0.0493* | |
| H2C5 | 0.052121 | 0.507087 | 0.423184 | 0.0493* | |
| H1C25 | 0.307562 | 0.455812 | 0.404772 | 0.0493* | |
| H2C25 | 0.250591 | 0.496403 | 0.369535 | 0.0493* | |
| H1C23 | 0.215025 | 0.410115 | 0.338268 | 0.0493* | |
| H2C23 | 0.076354 | 0.411747 | 0.375704 | 0.0493* | |
| H3C23 | 0.089969 | 0.447894 | 0.325993 | 0.0493* | |
| H1N6 | −0.010112 | 0.787202 | 0.462368 | 0.0587* | |
| H1C3 | 0.250564 | 0.823842 | 0.423945 | 0.0493* | |
| H2C3 | 0.128467 | 0.858746 | 0.439711 | 0.0493* | |
| H2C2 | 0.140192 | 0.849753 | 0.344444 | 0.0493* | |
| H1C6 | 0.097944 | 0.777667 | 0.301741 | 0.0493* | |
| H2C6 | 0.206204 | 0.763479 | 0.348775 | 0.0493* | |
| H3C6 | 0.038979 | 0.75304 | 0.355326 | 0.0493* | |
| H1C6a | −0.134209 | 0.796821 | 0.69181 | 0.0489* |
| U11 | U22 | U33 | U12 | U13 | U23 | |
| S1b | 0.0170 (11) | 0.0206 (10) | 0.044 (11) | 0.0013 (7) | −0.0027 (19) | 0.006 (2) |
| S1a | 0.0125 (10) | 0.0246 (10) | 0.033 (10) | −0.0013 (7) | 0.0052 (18) | −0.001 (2) |
| S1c | 0.0199 (11) | 0.0217 (10) | 0.029 (10) | −0.0033 (7) | 0.0008 (19) | −0.001 (2) |
| Cl1c | 0.0363 (12) | 0.0311 (11) | 0.064 (12) | 0.0046 (8) | −0.001 (2) | −0.008 (2) |
| Cl1b | 0.0468 (13) | 0.0301 (12) | 0.072 (12) | 0.0013 (9) | 0.008 (2) | −0.012 (2) |
| Cl1a | 0.0564 (15) | 0.0374 (13) | 0.055 (13) | −0.0070 (10) | 0.001 (2) | −0.009 (2) |
| O3b | 0.0172 (8) | 0.0243 (9) | 0.057 (9) | −0.0001 (6) | −0.0026 (16) | −0.0022 (16) |
| O2a | 0.0172 (8) | 0.0243 (9) | 0.057 (9) | −0.0001 (6) | −0.0026 (16) | −0.0022 (16) |
| O1b | 0.0172 (8) | 0.0243 (9) | 0.057 (9) | −0.0001 (6) | −0.0026 (16) | −0.0022 (16) |
| O1a | 0.0172 (8) | 0.0243 (9) | 0.057 (9) | −0.0001 (6) | −0.0026 (16) | −0.0022 (16) |
| O2c | 0.0172 (8) | 0.0243 (9) | 0.057 (9) | −0.0001 (6) | −0.0026 (16) | −0.0022 (16) |
| O3c | 0.0172 (8) | 0.0243 (9) | 0.057 (9) | −0.0001 (6) | −0.0026 (16) | −0.0022 (16) |
| O2b | 0.0172 (8) | 0.0243 (9) | 0.057 (9) | −0.0001 (6) | −0.0026 (16) | −0.0022 (16) |
| O3a | 0.0172 (8) | 0.0243 (9) | 0.057 (9) | −0.0001 (6) | −0.0026 (16) | −0.0022 (16) |
| O1c | 0.0172 (8) | 0.0243 (9) | 0.057 (9) | −0.0001 (6) | −0.0026 (16) | −0.0022 (16) |
| N2b | 0.0098 (9) | 0.0245 (11) | 0.064 (10) | −0.0017 (9) | −0.001 (2) | 0.013 (2) |
| N2c | 0.0098 (9) | 0.0245 (11) | 0.064 (10) | −0.0017 (9) | −0.001 (2) | 0.013 (2) |
| N1a | 0.0098 (9) | 0.0245 (11) | 0.064 (10) | −0.0017 (9) | −0.001 (2) | 0.013 (2) |
| N1b | 0.0098 (9) | 0.0245 (11) | 0.064 (10) | −0.0017 (9) | −0.001 (2) | 0.013 (2) |
| C8b | 0.0260 (16) | 0.0305 (14) | 0.067 (10) | −0.0026 (11) | −0.001 (3) | 0.002 (3) |
| N1c | 0.0098 (9) | 0.0245 (11) | 0.064 (10) | −0.0017 (9) | −0.001 (2) | 0.013 (2) |
| C6a | 0.0210 (16) | 0.030 (2) | 0.072 (15) | −0.0048 (15) | 0.003 (3) | −0.002 (4) |
| C8a | 0.0260 (16) | 0.0305 (14) | 0.067 (10) | −0.0026 (11) | −0.001 (3) | 0.002 (3) |
| N2a | 0.020 (3) | 0.020 (4) | 0.11 (3) | −0.008 (3) | −0.001 (6) | 0.010 (7) |
| C10b | 0.0260 (16) | 0.0305 (14) | 0.067 (10) | −0.0026 (11) | −0.001 (3) | 0.002 (3) |
| C8c | 0.0260 (16) | 0.0305 (14) | 0.067 (10) | −0.0026 (11) | −0.001 (3) | 0.002 (3) |
| C5b | 0.0211 (15) | 0.0182 (16) | 0.081 (16) | 0.0018 (14) | 0.001 (3) | 0.007 (3) |
| C6b | 0.0211 (15) | 0.0182 (16) | 0.081 (16) | 0.0018 (14) | 0.001 (3) | 0.007 (3) |
| C1a | 0.0210 (16) | 0.030 (2) | 0.072 (15) | −0.0048 (15) | 0.003 (3) | −0.002 (4) |
| C5a | 0.0210 (16) | 0.030 (2) | 0.072 (15) | −0.0048 (15) | 0.003 (3) | −0.002 (4) |
| C3a | 0.0210 (16) | 0.030 (2) | 0.072 (15) | −0.0048 (15) | 0.003 (3) | −0.002 (4) |
| C4b | 0.0211 (15) | 0.0182 (16) | 0.081 (16) | 0.0018 (14) | 0.001 (3) | 0.007 (3) |
| C1c | 0.0210 (16) | 0.0229 (17) | 0.056 (16) | 0.0003 (14) | −0.002 (3) | 0.003 (3) |
| C5c | 0.0210 (16) | 0.0229 (17) | 0.056 (16) | 0.0003 (14) | −0.002 (3) | 0.003 (3) |
| C9b | 0.0260 (16) | 0.0305 (14) | 0.067 (10) | −0.0026 (11) | −0.001 (3) | 0.002 (3) |
| C2c | 0.0210 (16) | 0.0229 (17) | 0.056 (16) | 0.0003 (14) | −0.002 (3) | 0.003 (3) |
| C3c | 0.0210 (16) | 0.0229 (17) | 0.056 (16) | 0.0003 (14) | −0.002 (3) | 0.003 (3) |
| C6c | 0.0210 (16) | 0.0229 (17) | 0.056 (16) | 0.0003 (14) | −0.002 (3) | 0.003 (3) |
| C2b | 0.0211 (15) | 0.0182 (16) | 0.081 (16) | 0.0018 (14) | 0.001 (3) | 0.007 (3) |
| C10c | 0.0260 (16) | 0.0305 (14) | 0.067 (10) | −0.0026 (11) | −0.001 (3) | 0.002 (3) |
| C9c | 0.0260 (16) | 0.0305 (14) | 0.067 (10) | −0.0026 (11) | −0.001 (3) | 0.002 (3) |
| C1b | 0.0211 (15) | 0.0182 (16) | 0.081 (16) | 0.0018 (14) | 0.001 (3) | 0.007 (3) |
| C2a | 0.0210 (16) | 0.030 (2) | 0.072 (15) | −0.0048 (15) | 0.003 (3) | −0.002 (4) |
| C3b | 0.0211 (15) | 0.0182 (16) | 0.081 (16) | 0.0018 (14) | 0.001 (3) | 0.007 (3) |
| C4c | 0.0210 (16) | 0.0229 (17) | 0.056 (16) | 0.0003 (14) | −0.002 (3) | 0.003 (3) |
| C4a | 0.0210 (16) | 0.030 (2) | 0.072 (15) | −0.0048 (15) | 0.003 (3) | −0.002 (4) |
| C9a | 0.0260 (16) | 0.0305 (14) | 0.067 (10) | −0.0026 (11) | −0.001 (3) | 0.002 (3) |
| C10a | 0.0260 (16) | 0.0305 (14) | 0.067 (10) | −0.0026 (11) | −0.001 (3) | 0.002 (3) |
| S1b—O1b | 1.442 (5) | C8c—H2C5 | 0.96 |
| S1b—O2b | 1.417 (5) | C5b—C6b | 1.40 (2) |
| S1a—O2a | 1.427 (5) | C5b—C4b | 1.392 (9) |
| S1a—O1a | 1.428 (4) | C5b—H1C5b | 0.96 |
| S1a—N1a | 1.583 (14) | C6b—C1b | 1.380 (18) |
| S1a—C4a | 1.756 (17) | C6b—H1C8 | 0.96 |
| S1c—O2c | 1.429 (5) | C1a—C2a | 1.404 (12) |
| S1c—O1c | 1.423 (5) | C5a—C4a | 1.385 (11) |
| S1c—C4c | 1.732 (15) | C5a—H1C10 | 0.96 |
| Cl1a—C1a | 1.690 (17) | C3a—C2a | 1.38 (2) |
| O3b—C7b | 1.219 (8) | C3a—C4a | 1.375 (18) |
| O3c—C7c | 1.231 (8) | C3a—H1C11 | 0.96 |
| O3a—C7a | 1.221 (8) | C4b—C3b | 1.332 (19) |
| N2b—C8b | 1.449 (15) | C1c—C2c | 1.367 (11) |
| N2b—C7b | 1.334 (17) | C1c—C6c | 1.367 (14) |
| N2b—H1N1 | 0.87 | C5c—C6c | 1.34 (2) |
| N2c—C8c | 1.450 (16) | C5c—C4c | 1.389 (12) |
| N2c—C7c | 1.319 (15) | C5c—H1C15 | 0.96 |
| N2c—H1N2 | 0.87 | C9b—H1C17 | 0.96 |
| N1a—C7a | 1.405 (14) | C9b—H2C17 | 0.96 |
| N1a—H1N3 | 0.87 | C2c—C3c | 1.35 (2) |
| N1b—C7b | 1.392 (14) | C2c—H1C19 | 0.96 |
| N1b—H1N4 | 0.87 | C3c—C4c | 1.392 (15) |
| C8b—C9b | 1.505 (19) | C3c—H1C20 | 0.96 |
| C8b—H1C1 | 0.96 | C6c—H1C21 | 0.96 |
| C8b—H2C1 | 0.96 | C2b—C1b | 1.405 (9) |
| N1c—C7c | 1.382 (13) | C2b—C3b | 1.40 (2) |
| N1c—H1N5 | 0.87 | C2b—H1C22 | 0.96 |
| C6a—C1a | 1.385 (18) | C10c—C9c | 1.533 (18) |
| C6a—C5a | 1.41 (2) | C10c—H1C23 | 0.96 |
| C6a—H1C6a | 0.96 | C10c—H2C23 | 0.96 |
| C8a—N2a | 1.455 (17) | C10c—H3C23 | 0.96 |
| C8a—C9a | 1.52 (3) | C9c—H1C25 | 0.96 |
| C8a—H1C3 | 0.96 | C9c—H2C25 | 0.96 |
| C8a—H2C3 | 0.96 | C2a—H1C27 | 0.96 |
| N2a—C7a | 1.304 (14) | C3b—H1C28 | 0.96 |
| N2a—H1N6 | 0.87 | H1C2—C9a | 0.96 |
| C10b—C9b | 1.482 (19) | C9a—C10a | 1.509 (15) |
| C10b—H1C4 | 0.96 | C9a—H2C2 | 0.96 |
| C10b—H2C4 | 0.96 | C10a—H1C6 | 0.96 |
| C10b—H3C4 | 0.96 | C10a—H2C6 | 0.96 |
| C8c—C9c | 1.46 (2) | C10a—H3C6 | 0.96 |
| C8c—H1C5 | 0.96 | ||
| O1b—S1b—O2b | 121.1 (3) | C4a—C3a—H1C11 | 120.76 |
| O2a—S1a—O1a | 120.7 (3) | C5b—C4b—C3b | 125.6 (15) |
| O2a—S1a—N1a | 104.8 (5) | C2c—C1c—C6c | 122.2 (13) |
| O2a—S1a—C4a | 104.9 (6) | O3c—C7c—N2c | 124.5 (10) |
| O1a—S1a—N1a | 111.3 (6) | O3c—C7c—N1c | 121.3 (10) |
| O1a—S1a—C4a | 107.3 (5) | N2c—C7c—N1c | 114.2 (6) |
| N1a—S1a—C4a | 106.9 (6) | C6c—C5c—C4c | 120.6 (9) |
| O2c—S1c—O1c | 119.3 (3) | C6c—C5c—H1C15 | 119.71 |
| O2c—S1c—C4c | 110.1 (7) | C4c—C5c—H1C15 | 119.71 |
| O1c—S1c—C4c | 105.8 (5) | C8b—C9b—C10b | 116.4 (7) |
| C8b—N2b—C7b | 120.3 (6) | C8b—C9b—H1C17 | 109.47 |
| C8b—N2b—H1N1 | 119.83 | C8b—C9b—H2C17 | 109.47 |
| C7b—N2b—H1N1 | 119.83 | C10b—C9b—H1C17 | 109.47 |
| C8c—N2c—C7c | 122.1 (6) | C10b—C9b—H2C17 | 109.47 |
| C8c—N2c—H1N2 | 118.95 | H1C17—C9b—H2C17 | 101.58 |
| C7c—N2c—H1N2 | 118.95 | C1c—C2c—C3c | 118.5 (10) |
| S1a—N1a—C7a | 126.0 (7) | C1c—C2c—H1C19 | 120.76 |
| S1a—N1a—H1N3 | 117 | C3c—C2c—H1C19 | 120.76 |
| C7a—N1a—H1N3 | 117 | C2c—C3c—C4c | 120.8 (8) |
| C7b—N1b—H1N4 | 117.91 | C2c—C3c—H1C20 | 119.62 |
| N2b—C8b—C9b | 113.3 (7) | C4c—C3c—H1C20 | 119.62 |
| N2b—C8b—H1C1 | 109.47 | C1c—C6c—C5c | 119.2 (8) |
| N2b—C8b—H2C1 | 109.47 | C1c—C6c—H1C21 | 120.38 |
| C9b—C8b—H1C1 | 109.47 | C5c—C6c—H1C21 | 120.38 |
| C9b—C8b—H2C1 | 109.47 | C1b—C2b—C3b | 116.4 (12) |
| H1C1—C8b—H2C1 | 105.36 | C1b—C2b—H1C22 | 121.81 |
| C7c—N1c—H1N5 | 118.72 | C3b—C2b—H1C22 | 121.81 |
| C1a—C6a—C5a | 120.2 (8) | C9c—C10c—H1C23 | 109.47 |
| C1a—C6a—H1C6a | 119.9 | C9c—C10c—H2C23 | 109.47 |
| C5a—C6a—H1C6a | 119.9 | C9c—C10c—H3C23 | 109.47 |
| N2a—C8a—C9a | 114.1 (9) | H1C23—C10c—H2C23 | 109.47 |
| N2a—C8a—H1C3 | 109.47 | H1C23—C10c—H3C23 | 109.47 |
| N2a—C8a—H2C3 | 109.47 | H2C23—C10c—H3C23 | 109.47 |
| C9a—C8a—H1C3 | 109.47 | O3a—C7a—N1a | 121.4 (10) |
| C9a—C8a—H2C3 | 109.47 | O3a—C7a—N2a | 124.8 (11) |
| H1C3—C8a—H2C3 | 104.37 | N1a—C7a—N2a | 113.8 (6) |
| C8a—N2a—C7a | 122.8 (7) | C8c—C9c—C10c | 115.9 (8) |
| C8a—N2a—H1N6 | 118.58 | C8c—C9c—H1C25 | 109.47 |
| C7a—N2a—H1N6 | 118.58 | C8c—C9c—H2C25 | 109.47 |
| C9b—C10b—H1C4 | 109.47 | C10c—C9c—H1C25 | 109.47 |
| C9b—C10b—H2C4 | 109.47 | C10c—C9c—H2C25 | 109.47 |
| C9b—C10b—H3C4 | 109.47 | H1C25—C9c—H2C25 | 102.14 |
| H1C4—C10b—H2C4 | 109.47 | C6b—C1b—C2b | 121.3 (13) |
| H1C4—C10b—H3C4 | 109.47 | C1a—C2a—C3a | 121.6 (11) |
| H2C4—C10b—H3C4 | 109.47 | C1a—C2a—H1C27 | 119.21 |
| N2c—C8c—C9c | 113.4 (7) | C3a—C2a—H1C27 | 119.21 |
| N2c—C8c—H1C5 | 109.47 | C4b—C3b—C2b | 120.3 (8) |
| N2c—C8c—H2C5 | 109.47 | C4b—C3b—H1C28 | 119.86 |
| C9c—C8c—H1C5 | 109.47 | C2b—C3b—H1C28 | 119.86 |
| C9c—C8c—H2C5 | 109.47 | S1c—C4c—C5c | 121.3 (9) |
| H1C5—C8c—H2C5 | 105.23 | S1c—C4c—C3c | 120.0 (8) |
| C6b—C5b—C4b | 114.3 (12) | C5c—C4c—C3c | 118.6 (13) |
| C6b—C5b—H1C5b | 122.86 | S1a—C4a—C5a | 117.9 (11) |
| C4b—C5b—H1C5b | 122.87 | S1a—C4a—C3a | 119.8 (8) |
| O3b—C7b—N2b | 124.8 (12) | C5a—C4a—C3a | 122.2 (15) |
| O3b—C7b—N1b | 122.4 (11) | C8a—C9a—H1C2 | 109.47 |
| N2b—C7b—N1b | 112.2 (7) | C8a—C9a—C10a | 111.3 (11) |
| C5b—C6b—C1b | 122.0 (8) | C8a—C9a—H2C2 | 109.47 |
| C5b—C6b—H1C8 | 119.02 | H1C2—C9a—C10a | 109.47 |
| C1b—C6b—H1C8 | 119.02 | H1C2—C9a—H2C2 | 107.63 |
| Cl1a—C1a—C6a | 120.3 (7) | C10a—C9a—H2C2 | 109.47 |
| Cl1a—C1a—C2a | 120.5 (10) | C9a—C10a—H1C6 | 109.47 |
| C6a—C1a—C2a | 118.8 (15) | C9a—C10a—H2C6 | 109.47 |
| C6a—C5a—C4a | 118.6 (12) | C9a—C10a—H3C6 | 109.47 |
| C6a—C5a—H1C10 | 120.7 | H1C6—C10a—H2C6 | 109.47 |
| C4a—C5a—H1C10 | 120.7 | H1C6—C10a—H3C6 | 109.47 |
| C2a—C3a—C4a | 118.5 (9) | H2C6—C10a—H3C6 | 109.47 |
| C2a—C3a—H1C11 | 120.76 |
| D—H···A | D—H | H···A | D···A | D—H···A |
| N2b—H1N1···O3ci | 0.87 | 2.09 | 2.876 (8) | 150.17 |
| N2b—H1N1···O1ci | 0.87 | 2.47 | 3.008 (8) | 120.20 |
| N1a—H1N3···O3aii | 0.87 | 1.95 | 2.672 (7) | 139.33 |
| N1b—H1N4···O3ci | 0.87 | 2.14 | 2.875 (9) | 142.38 |
| C8b—H1C1···O1ci | 0.96 | 2.40 | 3.091 (8) | 128.35 |
| C8b—H1C1···C5aiii | 0.96 | 2.48 | 3.274 (16) | 139.69 |
| C8b—H2C1···O3a | 0.96 | 2.36 | 3.212 (12) | 147.42 |
| N1c—H1N5···O3biv | 0.87 | 2.20 | 2.918 (8) | 140.32 |
| N1c—H1N5···O2aiv | 0.87 | 2.45 | 2.967 (17) | 118.90 |
| C10b—H3C4···O1bi | 0.96 | 2.43 | 3.378 (12) | 169.99 |
| C5b—H1C5b···O2a | 0.96 | 2.33 | 3.065 (14) | 132.61 |
| N2c—H1N2···O3biv | 0.87 | 2.06 | 2.869 (8) | 155.11 |
| N2c—H1N2···O2biv | 0.87 | 2.41 | 3.015 (9) | 126.79 |
| C8c—H2C5···O2biv | 0.96 | 2.39 | 3.089 (8) | 129.59 |
| C10c—H2C23···O2aiv | 0.96 | 2.40 | 3.318 (13) | 160.19 |
| N2a—H1N6···O1aii | 0.87 | 2.15 | 2.901 (8) | 144.24 |
| N2a—H1N6···O3aii | 0.87 | 2.47 | 3.200 (10) | 141.24 |
| C8a—H2C3···O3cv | 0.96 | 2.50 | 3.349 (16) | 148.06 |
| C10a—H3C6···O2civ | 0.96 | 2.41 | 3.315 (14) | 156.87 |
| Symmetry codes: (i) −x+1, −y+1, −z+1; (ii) x−1/2, −y+3/2, −z+1; (iii) x+1/2, −y+3/2, −z+1; (iv) −x, −y+1, −z+1; (v) −x+1/2, y+1/2, z. |
Footnotes
1Different terminology for more detailed classification, which takes into account the conformation of the alkyl tail itself, has also been suggested: Syn-L, Anti-L, Syn-T, Anti-T (Haripriya et al., 2021
; Ward et al., 2023
); trans-, gauche- (Drebushchak, Chukanov & Boldyreva, 2008
).
2Polymorphs β, γ, δ and ɛ are metastable (Drebushchak, Drebushchak, Chukanov & Boldyreva, 2008
).
Acknowledgements
Diffraction experiments carried out at the European Synchrotron Radiation Facility (ESRF, Grenoble, France) at ID27 were supported by approval of ESRF proposal CH-5600 (November 2018); experiments carried out at BM01 were supported by proposal CH-4901 (November 2016). Laboratory experiments using the Rigaku Synergy-S Dualflex diffractometer were performed at the Rigaku RESE center (Frankfurt, Germany, December 2018). The authors acknowledge Dmitry Chernyshov (BM01, ESRF), Gaston Garbarino (ID27, ESRF), Zoltan Gall and Jakub Wojciechowski (Rigaku RESE) for their support and help during the experiments.
Conflict of interest
The authors declare no conflicts of interest.
Funding information
The following funding is acknowledged: Russian Science Foundation (grant No. 23-77-10047, https://rscf.ru/project/23-77-10047/).
References
Adam, A., Billerey, D., Terrier, C., Bartholin, H., Regnault, L. P. & Rossat-Mignod, J. (1981). Phys. Lett. A 84, 24–27. CrossRef Web of Science Google Scholar
Ayala, A. P., Caetano, M. W. C., Honorato, S. B., Mendes Filho, J., Siesler, H. W., Faudone, S. N., Cuffini, S. L., Martins, F. T., da Silva, C. C. P. & Ellena, J. (2012). J. Raman Spectrosc. 43, 263–272. Web of Science CrossRef CAS Google Scholar
Belenguer, A. M., Cruz-Cabeza, A. J., Lampronti, G. I. & Sanders, J. K. M. (2019). CrystEngComm 21, 2203–2211. Web of Science CrossRef CAS Google Scholar
Boehler, R. (2006). Rev. Sci. Instrum. 77, 115103. Web of Science CrossRef Google Scholar
Boldyreva, E. (2007). Cryst. Growth Des. 7, 1662–1668. Web of Science CrossRef CAS Google Scholar
Boldyreva, E. V. (2018). Understanding intermolecular interactions in the solid state: approaches and techniques, edited by D. Chopra. pp. 32–97. The Royal Society of Chemistry. Google Scholar
Boldyreva, E. V., Dmitriev, V. & Hancock, B. C. (2006). Int. J. Pharm. 327, 51–57. Web of Science CrossRef PubMed CAS Google Scholar
Bouvart, N., Palix, R.-M., Arkhipov, S. G., Tumanov, I. A., Michalchuk, A. A. L. & Boldyreva, E. V. (2018). CrystEngComm 20, 1797–1803. Web of Science CrossRef CAS Google Scholar
Burger, A. & Ramberger, R. (1979). Mikrochim. Acta 72, 273–316. CrossRef Google Scholar
Bykov, M., Bykova, E., Dubrovinsky, L., Hanfland, M., Liermann, H.-P. & van Smaalen, S. (2015). Sci. Rep. 5, 9647. Web of Science CrossRef PubMed Google Scholar
Bzowski, B., Duda, H., Kusz, J., Warczewski, J., Behruzi, M. & Hahn, Th. (2003). J. Appl. Cryst. 36, 48–52. Web of Science CrossRef CAS IUCr Journals Google Scholar
Cervantes-Amezcua, A. (1965). JAMA: J. Am. Med. Assoc. 193, 759–762. Google Scholar
Cliffe, M. J. & Goodwin, A. L. (2012). J. Appl. Cryst. 45, 1321–1329. Web of Science CrossRef CAS IUCr Journals Google Scholar
Cruz-Cabeza, A. J. & Bernstein, J. (2014). Chem. Rev. 114, 2170–2191. Web of Science CAS PubMed Google Scholar
CrysAlisPro Software System (2016). Rigaku J. 32, 31–34. Google Scholar
Degtyareva, O., McMahon, M. I. & Nelmes, R. J. (2004). Phys. Rev. B 70, 184119. Web of Science CrossRef Google Scholar
Depmeier, W. & Mason, S. A. (1983). Solid State Commun. 46, 409–412. CrossRef CAS Web of Science Google Scholar
Dey, S., Schönleber, A., van Smaalen, S., Morgenroth, W. & Krebs Larsen, F. (2022). Chem. Eur. J. 28, e202104151. Web of Science CrossRef PubMed Google Scholar
Dolomanov, O. V., Bourhis, L. J., Gildea, R. J., Howard, J. A. K. & Puschmann, H. (2009). J. Appl. Cryst. 42, 339–341. Web of Science CrossRef CAS IUCr Journals Google Scholar
Drebushchak, T. N., Chesalov, Y. A. & Boldyreva, E. V. (2009). Acta Cryst. B65, 770–781. Web of Science CSD CrossRef CAS IUCr Journals Google Scholar
Drebushchak, T. N., Chukanov, N. V. & Boldyreva, E. V. (2006). Acta Cryst. E62, o4393–o4395. Web of Science CSD CrossRef CAS IUCr Journals Google Scholar
Drebushchak, T. N., Chukanov, N. V. & Boldyreva, E. V. (2007). Acta Cryst. C63, o355–o357. Web of Science CSD CrossRef CAS IUCr Journals Google Scholar
Drebushchak, T. N., Chukanov, N. V. & Boldyreva, E. V. (2008). Acta Cryst. C64, o623–o625. Web of Science CSD CrossRef CAS IUCr Journals Google Scholar
Drebushchak, T. N., Drebushchak, V. A. & Boldyreva, E. V. (2011). Acta Cryst. B67, 163–176. Web of Science CSD CrossRef CAS IUCr Journals Google Scholar
Drebushchak, T. N., Ogienko, A. A. & Boldyreva, E. V. (2011). CrystEngComm 13, 4405. Web of Science CrossRef Google Scholar
Drebushchak, V. A., Drebushchak, T. N., Chukanov, N. V. & Boldyreva, E. V. (2008). J. Therm. Anal. Calorim. 93, 343–351. Web of Science CrossRef CAS Google Scholar
Dyadkin, V., Pattison, P., Dmitriev, V. & Chernyshov, D. (2016). J. Synchrotron Rad. 23, 825–829. Web of Science CrossRef CAS IUCr Journals Google Scholar
Fisch, M., Lanza, A., Boldyreva, E., Macchi, P. & Casati, N. (2015). J. Phys. Chem. C 119, 18611–18617. Web of Science CSD CrossRef CAS Google Scholar
Gaydamaka, A. A. & Rashchenko, S. V. (2024). Acta Cryst. B80, 676–681. Web of Science CSD CrossRef IUCr Journals Google Scholar
Gibaud, A., Shapiro, S. M. & Gesland, J. Y. (1991). J. Phys. Condens. Matter 3, 4817–4824. CrossRef CAS Web of Science Google Scholar
Gonzalez-Platas, J., Alvaro, M., Nestola, F. & Angel, R. (2016). J. Appl. Cryst. 49, 1377–1382. Web of Science CrossRef CAS IUCr Journals Google Scholar
Gouhara, K. & Kato, N. (1984). J. Phys. Soc. Jpn 53, 2177–2180. CrossRef CAS Web of Science Google Scholar
Guérin, L., Trzop, E., Ishikawa, T., Koshihara, S., Yamamoto, T., Toudic, B. & Kato, R. (2023). Phys. Rev. B 108, 134104. Google Scholar
Haripriya, B., Hasija, A., Cruz-Cabeza, A. J., Shruti, I. & Chopra, D. (2021). Cryst. Growth Des. 21, 3158–3167. Google Scholar
Hübschle, C. B., Sheldrick, G. M. & Dittrich, B. (2011). J. Appl. Cryst. 44, 1281–1284. Web of Science CrossRef IUCr Journals Google Scholar
Iizumi, M. & Gesi, K. (1983). J. Phys. Soc. Jpn 52, 2526–2533. CrossRef CAS Web of Science Google Scholar
Kichanov, S. E., Kozlenko, D. P., Wąsicki, J., Nawrocik, W., Dubrovinsky, L. S., Liermann, H.-P., Morgenroth, W. & Savenko, B. N. (2015). J. Pharm. Sci. 104, 81–86. Web of Science CrossRef CAS PubMed Google Scholar
Klotz, S., Chervin, J.-C., Munsch, P. & Le Marchand, G. (2009). J. Phys. D Appl. Phys. 42, 075413. Web of Science CrossRef Google Scholar
Klotz, S., Philippe, J. & Cochard, E. (2006). J. Phys. D Appl. Phys. 39, 1674–1677. Web of Science CrossRef CAS Google Scholar
Koo, C. H., Cho, S. & Yeon, Y. H. (1980). Arch. Pharm. Res. 3, 37–49. CrossRef CAS Google Scholar
Kopylova, Yu. O., Volkov, S. N., Krzhizhanovskaya, M. G., Banaru, A. M., Yukhno, V. A., Aksenov, S. M. & Bubnova, R. S. (2025). CrystEngComm 27, 4196–4208. Web of Science CrossRef ICSD CAS Google Scholar
Loshak, N. V., Kichanov, S. E., Kozlenko, D. P., Wąsicki, J., Lukin, E. V., Lathe, K., Savenko, B. N. & Bulavin, L. A. (2013). J. Surf. Investig. 7, 1143–1147. CrossRef CAS Google Scholar
Macrae, C. F., Sovago, I., Cottrell, S. J., Galek, P. T. A., McCabe, P., Pidcock, E., Platings, M., Shields, G. P., Stevens, J. S., Towler, M. & Wood, P. A. (2020). J. Appl. Cryst. 53, 226–235. Web of Science CrossRef CAS IUCr Journals Google Scholar
Menon, A. M., Sidhartha, N. N., Shruti, I., Suresh, A., Meena, R., Dikundwar, A. G. & Chopra, D. (2024). Mol. Pharm. 21, 2894–2907. Web of Science CSD CrossRef CAS PubMed Google Scholar
Momma, K. & Izumi, F. (2011). J. Appl. Cryst. 44, 1272–1276. Web of Science CrossRef CAS IUCr Journals Google Scholar
Muller, P., Herbst-Irmer, R., Spek, A., Schneider, T. & Sawaya, M. (2006). Crystal structure refinement: a crystallographer's guide to SHELXL. Oxford University Press. Google Scholar
Petříček, V., Palatinus, L., Plášil, J. & Dušek, M. (2023). Z. Kristallogr. Cryst. Mater. 238, 271–282. Google Scholar
Poręba, T., Comboni, D., Mezouar, M., Garbarino, G. & Hanfland, M. (2023). J. Phys. Condens. Matter 35, 054001. Google Scholar
Raghu, M., Subramanyam, S. V. & Chatterjee, S. (1989). Solid State Commun. 69, 949–952. CrossRef CAS Web of Science Google Scholar
Schaper, A. K., Schosnig, M., Kutoglu, A., Treutmann, W. & Rager, H. (2001). Acta Cryst. B57, 443–448. Web of Science CrossRef CAS IUCr Journals Google Scholar
Schobinger-Papamantellos, P., Buschow, K. H. J., Maaroufi, F. & Tolédano, P. (1988). J. Phys. Colloq. 49, C8-423–C8-424. Google Scholar
Schönleber, A. (2024). Phys. Sci. Rev. 9, 2597–2621. Google Scholar
Seryotkin, Y. V., Drebushchak, T. N. & Boldyreva, E. V. (2013). Acta Cryst. B69, 77–85. CSD CrossRef CAS IUCr Journals Google Scholar
Sheldrick, G. M. (2015a). Acta Cryst. C71, 3–8. Web of Science CrossRef IUCr Journals Google Scholar
Sheldrick, G. M. (2015b). Acta Cryst. A71, 3–8. Web of Science CrossRef IUCr Journals Google Scholar
Shen, G., Wang, Y., Dewaele, A., Wu, C., Fratanduono, D. E., Eggert, J., Klotz, S., Dziubek, K. F., Loubeyre, P., Fat'yanov, O. V., Asimow, P. D., Mashimo, T. & Wentzcovitch, R. M. M. (2020). High Pressure Res. 40, 299–314. Web of Science CrossRef Google Scholar
Sougoti, M., Le Marrec, F., Beaufils, S., Ollivier, J., Bourges, P., Toudic, B. & Ecolivet, C. (2024). Phys. Rev. B 110, 024103. Web of Science CrossRef Google Scholar
Tamura, I., Noda, Y., Kuroiwa, Y., Mochida, T. & Sugawara, T. (2000). J. Phys. Condens. Matter 12, 8345–8356. Web of Science CrossRef CAS Google Scholar
Tan, X. & Ma, C. (2021). J. Phys. Chem. C 125, 17428–17437. Web of Science CrossRef CAS Google Scholar
Tumanov, N. A., Boldyreva, E. V., Kolesov, B. A., Kurnosov, A. V. & Quesada Cabrera, R. (2010). Acta Cryst. B66, 458–471. Web of Science CSD CrossRef CAS IUCr Journals Google Scholar
Ward, M. R., Taylor, C. R., Mulvee, M. T., Lampronti, G. I., Belenguer, A. M., Steed, J. W., Day, G. M. & Oswald, I. D. H. (2023). Cryst. Growth Des. 23, 7217–7230. Web of Science CSD CrossRef CAS PubMed Google Scholar
Wasicki, J., Kozlenko, D. P., Pankov, S. E., Bilski, P., Pajzderska, A., Hancock, B. C., Medek, A., Nawrocik, W. & Savenko, B. N. (2009). J. Pharm. Sci. 98, 1426–1437. Web of Science CrossRef PubMed CAS Google Scholar
Yanda, P., Boudjada, N., Rodríguez-Carvajal, J. & Sundaresan, A. (2024). Phys. Rev. B 109, 104411. Web of Science CrossRef Google Scholar
Zakharov, B. A. & Boldyreva, E. V. (2019). CrystEngComm 21, 10–22. Web of Science CrossRef CAS Google Scholar
Zakharov, B. A., Goryainov, S. V. & Boldyreva, E. V. (2016). CrystEngComm 18, 5423–5428. Web of Science CSD CrossRef CAS Google Scholar
Zakharov, B. A., Seryotkin, Y. V., Tumanov, N. A., Paliwoda, D., Hanfland, M., Kurnosov, A. V. & Boldyreva, E. V. (2016). RSC Adv. 6, 92629–92637. Web of Science CrossRef CAS Google Scholar
Zakharov, B. A., Tumanov, N. A. & Boldyreva, E. V. (2015). CrystEngComm 17, 2074–2079. Web of Science CSD CrossRef CAS Google Scholar
Zhang, L., Shi, K., Wang, Y., Kong, J., Qiao, P., Yang, H., Zhang, J., Su, L., Dong, X. & Yang, G. (2021). J. Phys. Chem. C 125, 6983–6989. Web of Science CrossRef CAS Google Scholar
This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
access

journal menu



