In the crystal structure of the title cocrystal, 2C
12H
6N
2O
2·C
2H
6N
4O
2, the diaminoglyoxime molecules are located on inversion centres, while the 1,10-phenanthroline-5,6-dione molecules are located in general positions. Both molecules are connected through intermolecular N—H
O hydrogen bonds.
Supporting information
CCDC reference: 629427
Key indicators
- Single-crystal X-ray study
- T = 220 K
- Mean (C-C) = 0.003 Å
- R factor = 0.048
- wR factor = 0.136
- Data-to-parameter ratio = 11.0
checkCIF/PLATON results
No syntax errors found
Alert level B
PLAT029_ALERT_3_B _diffrn_measured_fraction_theta_full Low ....... 0.96
PLAT432_ALERT_2_B Short Inter X...Y Contact O3 .. C1 .. 2.78 Ang.
Alert level C
PLAT041_ALERT_1_C Calc. and Rep. SumFormula Strings Differ .... ?
PLAT042_ALERT_1_C Calc. and Rep. MoietyFormula Strings Differ .... ?
PLAT045_ALERT_1_C Calculated and Reported Z Differ by ............ 2.00 Ratio
PLAT152_ALERT_1_C Supplied and Calc Volume s.u. Inconsistent ..... ?
PLAT369_ALERT_2_C Long C(sp2)-C(sp2) Bond C1 - C12 ... 1.53 Ang.
PLAT432_ALERT_2_C Short Inter X...Y Contact O3 .. C12 .. 2.93 Ang.
PLAT720_ALERT_4_C Number of Unusual/Non-Standard Label(s) ........ 3
0 ALERT level A = In general: serious problem
2 ALERT level B = Potentially serious problem
7 ALERT level C = Check and explain
0 ALERT level G = General alerts; check
4 ALERT type 1 CIF construction/syntax error, inconsistent or missing data
3 ALERT type 2 Indicator that the structure model may be wrong or deficient
1 ALERT type 3 Indicator that the structure quality may be low
1 ALERT type 4 Improvement, methodology, query or suggestion
0 ALERT type 5 Informative message, check
Data collection: IPDS Program Package (Stoe & Cie, 1998); cell refinement: IPDS Program Package; data reduction: IPDS Program Package; program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: SHELXTL (Bruker, 1998) and DIAMOND (Brandenburg, 1999); software used to prepare material for publication: SHELXTL.
Bis(1,10-phenanthroline-5,6-dione) diaminoglyoxime
top
Crystal data top
2C12H6N2O2·C2H6N4O2 | Z = 1 |
Mr = 538.48 | F(000) = 278 |
Triclinic, P1 | Dx = 1.528 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 7.1513 (8) Å | Cell parameters from 2741 reflections |
b = 9.3637 (14) Å | θ = 3.5–28° |
c = 9.6271 (12) Å | µ = 0.11 mm−1 |
α = 78.712 (16)° | T = 220 K |
β = 81.427 (15)° | Block, red |
γ = 68.269 (15)° | 0.30 × 0.15 × 0.15 mm |
V = 585.18 (13) Å3 | |
Data collection top
Stoe IPDS-1 diffractometer | 1395 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.040 |
Graphite monochromator | θmax = 25.0°, θmin = 3.2° |
φ scans | h = −8→8 |
3472 measured reflections | k = −11→11 |
1991 independent reflections | l = −11→11 |
Refinement top
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.048 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.136 | H-atom parameters constrained |
S = 0.98 | w = 1/[σ2(Fo2) + (0.0876P)2] where P = (Fo2 + 2Fc2)/3 |
1991 reflections | (Δ/σ)max < 0.001 |
181 parameters | Δρmax = 0.24 e Å−3 |
0 restraints | Δρmin = −0.20 e Å−3 |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
O1 | −0.0596 (2) | 0.39276 (18) | 0.77530 (17) | 0.0469 (5) | |
O2 | 0.1168 (3) | 0.1953 (2) | 0.58301 (16) | 0.0538 (5) | |
N1 | 0.2401 (3) | −0.0160 (2) | 1.14428 (18) | 0.0369 (5) | |
N2 | 0.4397 (3) | −0.2012 (2) | 0.95105 (18) | 0.0349 (4) | |
C1 | 0.0466 (3) | 0.2604 (2) | 0.8161 (2) | 0.0330 (5) | |
C2 | 0.0791 (3) | 0.1982 (2) | 0.9673 (2) | 0.0296 (5) | |
C3 | −0.0183 (4) | 0.2898 (3) | 1.0729 (3) | 0.0414 (6) | |
H3 | −0.1058 | 0.3928 | 1.0491 | 0.050* | |
C4 | 0.0155 (4) | 0.2272 (3) | 1.2118 (3) | 0.0484 (6) | |
H4 | −0.0483 | 0.2866 | 1.2851 | 0.058* | |
C5 | 0.1447 (4) | 0.0757 (3) | 1.2424 (2) | 0.0464 (6) | |
H5 | 0.1671 | 0.0343 | 1.3381 | 0.056* | |
C6 | 0.2083 (3) | 0.0460 (2) | 1.0079 (2) | 0.0274 (5) | |
C7 | 0.3172 (3) | −0.0578 (2) | 0.9010 (2) | 0.0277 (5) | |
C8 | 0.5392 (4) | −0.2962 (3) | 0.8578 (3) | 0.0451 (6) | |
H8 | 0.6241 | −0.3970 | 0.8925 | 0.054* | |
C9 | 0.5255 (4) | −0.2559 (3) | 0.7116 (3) | 0.0464 (6) | |
H9 | 0.6011 | −0.3265 | 0.6492 | 0.056* | |
C10 | 0.3983 (4) | −0.1099 (3) | 0.6613 (2) | 0.0406 (6) | |
H10 | 0.3832 | −0.0794 | 0.5634 | 0.049* | |
C11 | 0.2917 (3) | −0.0071 (2) | 0.7566 (2) | 0.0303 (5) | |
C12 | 0.1518 (3) | 0.1506 (2) | 0.7064 (2) | 0.0343 (5) | |
O3 | 0.4122 (3) | 0.3105 (2) | 0.75937 (17) | 0.0543 (5) | |
H1O1 | 0.4965 | 0.2558 | 0.8165 | 0.081* | |
N3 | 0.5422 (3) | 0.3635 (2) | 0.65360 (19) | 0.0427 (5) | |
H1N3 | 0.1713 | 0.4667 | 0.6103 | 0.064* | |
H2N3 | 0.1855 | 0.5876 | 0.4807 | 0.064* | |
N4 | 0.2380 (3) | 0.5176 (2) | 0.55172 (19) | 0.0421 (5) | |
C13 | 0.4401 (3) | 0.4660 (2) | 0.5576 (2) | 0.0315 (5) | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
O1 | 0.0374 (9) | 0.0316 (9) | 0.0574 (10) | −0.0008 (7) | −0.0109 (7) | 0.0086 (7) |
O2 | 0.0679 (13) | 0.0519 (10) | 0.0327 (9) | −0.0121 (9) | −0.0220 (8) | 0.0091 (7) |
N1 | 0.0401 (11) | 0.0429 (11) | 0.0288 (9) | −0.0176 (9) | −0.0101 (7) | 0.0031 (8) |
N2 | 0.0303 (10) | 0.0268 (9) | 0.0419 (10) | −0.0042 (8) | −0.0099 (8) | 0.0013 (7) |
C1 | 0.0247 (11) | 0.0285 (11) | 0.0425 (12) | −0.0076 (9) | −0.0101 (9) | 0.0044 (9) |
C2 | 0.0252 (10) | 0.0291 (10) | 0.0351 (11) | −0.0106 (9) | −0.0041 (8) | −0.0026 (8) |
C3 | 0.0317 (12) | 0.0372 (12) | 0.0566 (14) | −0.0114 (10) | 0.0000 (10) | −0.0146 (10) |
C4 | 0.0464 (15) | 0.0648 (17) | 0.0454 (13) | −0.0279 (14) | 0.0075 (11) | −0.0262 (12) |
C5 | 0.0529 (15) | 0.0677 (17) | 0.0284 (11) | −0.0320 (14) | −0.0037 (10) | −0.0083 (11) |
C6 | 0.0252 (10) | 0.0300 (10) | 0.0282 (10) | −0.0113 (9) | −0.0082 (8) | 0.0008 (8) |
C7 | 0.0225 (10) | 0.0260 (10) | 0.0335 (10) | −0.0079 (8) | −0.0077 (8) | 0.0007 (8) |
C8 | 0.0341 (13) | 0.0302 (12) | 0.0644 (15) | −0.0017 (10) | −0.0099 (11) | −0.0070 (11) |
C9 | 0.0360 (13) | 0.0452 (14) | 0.0594 (15) | −0.0088 (11) | −0.0012 (11) | −0.0243 (11) |
C10 | 0.0400 (13) | 0.0500 (14) | 0.0355 (11) | −0.0180 (12) | −0.0033 (9) | −0.0103 (10) |
C11 | 0.0293 (11) | 0.0313 (11) | 0.0308 (10) | −0.0114 (9) | −0.0072 (8) | −0.0007 (8) |
C12 | 0.0342 (12) | 0.0350 (12) | 0.0319 (11) | −0.0124 (10) | −0.0118 (9) | 0.0065 (9) |
O3 | 0.0429 (10) | 0.0670 (12) | 0.0475 (9) | −0.0269 (9) | −0.0218 (8) | 0.0324 (8) |
N3 | 0.0425 (11) | 0.0449 (11) | 0.0385 (10) | −0.0198 (10) | −0.0149 (8) | 0.0161 (8) |
N4 | 0.0357 (11) | 0.0432 (11) | 0.0370 (10) | −0.0085 (9) | −0.0091 (8) | 0.0113 (8) |
C13 | 0.0347 (11) | 0.0265 (10) | 0.0318 (10) | −0.0086 (9) | −0.0108 (8) | 0.0004 (8) |
Geometric parameters (Å, º) top
O1—C1 | 1.212 (3) | C7—C11 | 1.395 (3) |
O2—C12 | 1.211 (2) | C8—C9 | 1.393 (3) |
N1—C5 | 1.336 (3) | C8—H8 | 0.9400 |
N1—C6 | 1.343 (2) | C9—C10 | 1.372 (3) |
N2—C8 | 1.326 (3) | C9—H9 | 0.9400 |
N2—C7 | 1.343 (3) | C10—C11 | 1.394 (3) |
C1—C2 | 1.476 (3) | C10—H10 | 0.9400 |
C1—C12 | 1.534 (3) | C11—C12 | 1.478 (3) |
C2—C3 | 1.394 (3) | O3—N3 | 1.417 (3) |
C2—C6 | 1.397 (3) | O3—H1O1 | 0.8300 |
C3—C4 | 1.370 (3) | N3—C13 | 1.283 (3) |
C3—H3 | 0.9400 | N4—C13 | 1.350 (3) |
C4—C5 | 1.379 (4) | N4—H1N3 | 0.8701 |
C4—H4 | 0.9400 | N4—H2N3 | 0.8701 |
C5—H5 | 0.9400 | C13—C13i | 1.487 (4) |
C6—C7 | 1.484 (3) | | |
| | | |
C5—N1—C6 | 117.1 (2) | N2—C8—C9 | 124.0 (2) |
C8—N2—C7 | 117.77 (18) | N2—C8—H8 | 118.0 |
O1—C1—C2 | 123.2 (2) | C9—C8—H8 | 118.0 |
O1—C1—C12 | 118.90 (19) | C10—C9—C8 | 117.9 (2) |
C2—C1—C12 | 117.86 (17) | C10—C9—H9 | 121.0 |
C3—C2—C6 | 118.37 (19) | C8—C9—H9 | 121.0 |
C3—C2—C1 | 120.82 (19) | C9—C10—C11 | 119.4 (2) |
C6—C2—C1 | 120.81 (18) | C9—C10—H10 | 120.3 |
C4—C3—C2 | 118.9 (2) | C11—C10—H10 | 120.3 |
C4—C3—H3 | 120.5 | C10—C11—C7 | 118.33 (19) |
C2—C3—H3 | 120.5 | C10—C11—C12 | 120.93 (18) |
C3—C4—C5 | 118.8 (2) | C7—C11—C12 | 120.73 (18) |
C3—C4—H4 | 120.6 | O2—C12—C11 | 122.6 (2) |
C5—C4—H4 | 120.6 | O2—C12—C1 | 119.19 (18) |
N1—C5—C4 | 124.0 (2) | C11—C12—C1 | 118.25 (17) |
N1—C5—H5 | 118.0 | N3—O3—H1O1 | 98.7 |
C4—C5—H5 | 118.0 | C13—N3—O3 | 110.48 (19) |
N1—C6—C2 | 122.77 (19) | C13—N4—H1N3 | 117.3 |
N1—C6—C7 | 115.99 (17) | C13—N4—H2N3 | 118.4 |
C2—C6—C7 | 121.23 (17) | H1N3—N4—H2N3 | 123.3 |
N2—C7—C11 | 122.50 (18) | N3—C13—N4 | 126.7 (2) |
N2—C7—C6 | 116.53 (17) | N3—C13—C13i | 115.5 (2) |
C11—C7—C6 | 120.97 (17) | N4—C13—C13i | 117.8 (2) |
Symmetry code: (i) −x+1, −y+1, −z+1. |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
O3—H1O1···N2ii | 0.83 | 2.27 | 2.984 (2) | 144 |
O3—H1O1···N1ii | 0.83 | 2.34 | 3.043 (3) | 143 |
N4—H1N3···O1 | 0.87 | 2.32 | 3.166 (3) | 166 |
N4—H2N3···O2iii | 0.87 | 2.42 | 3.149 (3) | 142 |
Symmetry codes: (ii) −x+1, −y, −z+2; (iii) −x, −y+1, −z+1. |