Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S2053229614020233/qs3043sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S2053229614020233/qs3043MeParatIsup2.hkl | |
Structure factor file (CIF format) https://doi.org/10.1107/S2053229614020233/qs3043DicapthonIIsup3.hkl | |
Chemical Markup Language (CML) file https://doi.org/10.1107/S2053229614020233/qs3043MeParatIsup4.cml | |
Chemical Markup Language (CML) file https://doi.org/10.1107/S2053229614020233/qs3043DicapthonIIsup5.cml |
CCDC references: 1023405; 1023406
Determinations of the structures of methyl parathion, (I), and dicapthon, (I), were undertaken as part of an ongoing study of organophosphorus insecticides. The structure of (I) has been determined previously (Bally, 1970) from room-temperature film work (R = 16%). However, the current determination has made it possible to make more precise geometric comparisons. An initial attempt in this laboratory to determine the structure of (I) at room temperature produced poor results since the melting point of (I) is \sim 20 K above room temperature. Data reported here for (I) were collected at 100 K to produce better results.
Dicapthon, (II), is the 2-chloro derivative of Methyl Parathion and has noticable differences in toxicity, as determined by LD50 values (0.018 versus 0.027 p.p.m. for mosquito larva and 15 versus 400 mg kg-1 for rats for methyl parathion and dicapthon, respectively; White-Stevens, 1971). So dicapthon is less toxic to mosquitos while being 27 times less toxic to mammals (rat). Structural differences, as noted below, between (I) and (II) presumably account for most of the notable differences in toxicity.
Methyl parathion, (I), was commercially available (Sigma–Aldrich) and crystals were grown by slow evaporation of a solution in cyclohexane. Dicapthon, (II), was also commercially available (Chem Service) and crystals were grown by slow evaporation of a solution in ethanol.
Crystal data, data collection and structure refinement details are summarized in Table 1. The approximate positions of the H atoms were first obtained from a difference map, then placed in ideal positions. Bond lengths were constrained at 0.93 Å (AFIX 43) for aryl C—H groups and at 0.96 Å (AFIX 137) for methyl C—H groups; the Uiso(H) values were fixed at 1.5Ueq(C) for the methyl H atoms and at 1.2Ueq(C) for the aryl H atoms. For (II), the methyl H atoms were disordered and the occupancies were refined. In the final stages of refinement of (II), four reflections with very small or negative Fo values were deemed to be in high disagreement with their Fc values and were eliminated from the final refinement. No reflections were eliminated for (I).
For (I) (Fig. 1) and (II) (Fig. 2), the angles (Table 2) about atoms C3, C4, and C5 indicate distortions (from an ideal of 120°) that are likely due to the presence of the –NO2 group at C4. Differences between (I) and (II) involving atom C1 are noted in Table 3; four angles have large (> 5) Δ/σ values. The pattern of increased C2—C1—C6 and C3—C4—C5 angles for p-nitrothiophosphates is comparable to similar compounds (cf. Table 4).
The plane defined by atoms C4/N1/O4/O5 in (I) makes a dihedral angle of 10.76 (8)° with that of the ring [the corresponding angle is 5.8 (1)° in (II)]. The tipped –NO2 groups imply slightly diminished π-overlaps with the rings versus an ideal (coplanar) geometry.
For (I) and (II), the P1—O1 distances are significantly (52σ and 32σ, respectively) greater than the averages of the P1—O2 and P1—O3 distances (Table 2). In addition, the O1—C1 distances are ~41σ and 23σ, respectively, shorter than the corresponding average methoxy O—C distance, thus indicating some double-bond character with atoms O1 and C1. Both effects likely contribute to O1 being the site of known hydrolysis of organophosphorus pesticides.
When atom P1 is bonded to two methoxy groups, the C2—C1—O1—P1 torsion angles (per the numbering used here) for some similar thiophosphate pesticides (Table 3) are in the range ~90–117°; the range for the other substituents is ~100–165° (most of which are greater than the –OMe range). For those containing the smaller –OMe angles, it is likely that the torsion angles are more influenced by intramolecular rather than intermolecular forces.
The C2—C1—O1—P1 torsion angles [90.42 (12) and 113.28 (19)° for (I) and (II), respectively] indicate that P1 leans away from Cl1 in (II), while S1 is tipped towards Cl1 [C1—O1—P1—S1 = -37.32 (18)°, versus -42.48 (10)° for (I)]. This `scorpion-like' appearance (Figs. 1 and 2) has been noted in previous structures; see citations in Table 3. No intra- or intermolecular hydrogen bonding is observed in the title compounds.
Data collection: APEX2 (Bruker, 2008) for MeParatI; XSCANS (Bruker, 1996) for DicapthonII. Cell refinement: APEX2 (Bruker, 2008) for MeParatI; XSCANS (Bruker, 1996) for DicapthonII. Data reduction: SADABS and SAINT (Bruker, 2008) for MeParatI; XSCANS (Bruker, 1996) for DicapthonII. For both compounds, program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL/PC (Sheldrick, 2008); software used to prepare material for publication: SHELXTL/PC (Sheldrick, 2008) and SHELXL97 (Sheldrick, 2008).
C8H10NO5PS | F(000) = 544 |
Mr = 263.20 | Dx = 1.525 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 9098 reflections |
a = 7.0232 (3) Å | θ = 2.6–27.5° |
b = 21.1563 (8) Å | µ = 0.43 mm−1 |
c = 7.9679 (3) Å | T = 100 K |
β = 104.4284 (4)° | Parallelepiped, colorless |
V = 1146.57 (8) Å3 | 0.53 × 0.45 × 0.31 mm |
Z = 4 |
Bruker APEXII diffractometer | 2619 independent reflections |
Radiation source: normal-focus sealed tube | 2489 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.017 |
φ and ω scans; a full Eward sphere was collected. | θmax = 27.5°, θmin = 1.9° |
Absorption correction: part of the refinement model (ΔF) (SADABS; Bruker, 2008) | h = −9→9 |
Tmin = 0.80, Tmax = 0.88 | k = −27→27 |
13180 measured reflections | l = −10→10 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.025 | Hydrogen site location: difference Fourier map |
wR(F2) = 0.068 | H-atom parameters constrained |
S = 1.05 | w = 1/[σ2(Fo2) + (0.035P)2 + 0.601P] where P = (Fo2 + 2Fc2)/3 |
2619 reflections | (Δ/σ)max = 0.001 |
147 parameters | Δρmax = 0.32 e Å−3 |
0 restraints | Δρmin = −0.36 e Å−3 |
C8H10NO5PS | V = 1146.57 (8) Å3 |
Mr = 263.20 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 7.0232 (3) Å | µ = 0.43 mm−1 |
b = 21.1563 (8) Å | T = 100 K |
c = 7.9679 (3) Å | 0.53 × 0.45 × 0.31 mm |
β = 104.4284 (4)° |
Bruker APEXII diffractometer | 2619 independent reflections |
Absorption correction: part of the refinement model (ΔF) (SADABS; Bruker, 2008) | 2489 reflections with I > 2σ(I) |
Tmin = 0.80, Tmax = 0.88 | Rint = 0.017 |
13180 measured reflections |
R[F2 > 2σ(F2)] = 0.025 | 0 restraints |
wR(F2) = 0.068 | H-atom parameters constrained |
S = 1.05 | Δρmax = 0.32 e Å−3 |
2619 reflections | Δρmin = −0.36 e Å−3 |
147 parameters |
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor, wR, and goodness of fit, S, are based on F2, conventional R-factors, R, are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
S1 | 0.71351 (4) | 0.650889 (14) | 0.95845 (4) | 0.01876 (9) | |
P1 | 0.49957 (4) | 0.604017 (14) | 0.81734 (4) | 0.01366 (9) | |
O1 | 0.34735 (13) | 0.64565 (4) | 0.67538 (11) | 0.01658 (18) | |
O2 | 0.54622 (13) | 0.55080 (4) | 0.69687 (11) | 0.01832 (19) | |
O3 | 0.37555 (13) | 0.56917 (4) | 0.92679 (11) | 0.01931 (19) | |
O4 | 0.15843 (16) | 0.93043 (4) | 0.77112 (14) | 0.0293 (2) | |
O5 | −0.05299 (15) | 0.88617 (5) | 0.89039 (13) | 0.0276 (2) | |
N1 | 0.08003 (16) | 0.88373 (5) | 0.81565 (14) | 0.0203 (2) | |
C1 | 0.28390 (17) | 0.70508 (5) | 0.71516 (14) | 0.0150 (2) | |
C2 | 0.38926 (18) | 0.75822 (6) | 0.68980 (15) | 0.0167 (2) | |
H2 | 0.5076 | 0.7540 | 0.6510 | 0.020* | |
C3 | 0.32064 (18) | 0.81738 (6) | 0.72072 (15) | 0.0172 (2) | |
H3 | 0.3900 | 0.8550 | 0.7039 | 0.021* | |
C4 | 0.14957 (18) | 0.82104 (6) | 0.77789 (15) | 0.0165 (2) | |
C5 | 0.04286 (18) | 0.76823 (6) | 0.80226 (15) | 0.0178 (2) | |
H5 | −0.0750 | 0.7726 | 0.8417 | 0.021* | |
C6 | 0.11124 (17) | 0.70906 (6) | 0.76944 (15) | 0.0170 (2) | |
H6 | 0.0400 | 0.6715 | 0.7836 | 0.020* | |
C7 | 0.6579 (2) | 0.56617 (6) | 0.57091 (17) | 0.0216 (3) | |
H7A | 0.6944 | 0.5279 | 0.5223 | 0.032* | 0.645 (18) |
H7B | 0.7742 | 0.5891 | 0.6271 | 0.032* | 0.645 (18) |
H7C | 0.5787 | 0.5916 | 0.4803 | 0.032* | 0.645 (18) |
H7D | 0.6705 | 0.6112 | 0.5642 | 0.032* | 0.355 (18) |
H7E | 0.5906 | 0.5500 | 0.4593 | 0.032* | 0.355 (18) |
H7F | 0.7862 | 0.5475 | 0.6062 | 0.032* | 0.355 (18) |
C8 | 0.2118 (2) | 0.52777 (7) | 0.8468 (2) | 0.0271 (3) | |
H8A | 0.1201 | 0.5263 | 0.9182 | 0.041* | 0.92 (2) |
H8B | 0.2605 | 0.4860 | 0.8354 | 0.041* | 0.92 (2) |
H8C | 0.1472 | 0.5438 | 0.7344 | 0.041* | 0.92 (2) |
H8D | 0.2318 | 0.5111 | 0.7404 | 0.041* | 0.08 (2) |
H8E | 0.0914 | 0.5514 | 0.8232 | 0.041* | 0.08 (2) |
H8F | 0.2047 | 0.4936 | 0.9242 | 0.041* | 0.08 (2) |
U11 | U22 | U33 | U12 | U13 | U23 | |
S1 | 0.01532 (15) | 0.01926 (16) | 0.01971 (16) | −0.00199 (10) | 0.00065 (11) | −0.00190 (11) |
P1 | 0.01408 (15) | 0.01236 (15) | 0.01455 (15) | −0.00054 (10) | 0.00356 (11) | −0.00027 (10) |
O1 | 0.0186 (4) | 0.0142 (4) | 0.0151 (4) | 0.0018 (3) | 0.0007 (3) | −0.0018 (3) |
O2 | 0.0220 (4) | 0.0136 (4) | 0.0217 (4) | −0.0009 (3) | 0.0099 (3) | −0.0024 (3) |
O3 | 0.0211 (4) | 0.0187 (4) | 0.0194 (4) | −0.0049 (3) | 0.0074 (3) | 0.0001 (3) |
O4 | 0.0351 (6) | 0.0155 (4) | 0.0379 (6) | 0.0015 (4) | 0.0100 (5) | −0.0010 (4) |
O5 | 0.0306 (5) | 0.0291 (5) | 0.0252 (5) | 0.0104 (4) | 0.0110 (4) | −0.0013 (4) |
N1 | 0.0226 (5) | 0.0190 (5) | 0.0171 (5) | 0.0050 (4) | 0.0006 (4) | −0.0016 (4) |
C1 | 0.0167 (5) | 0.0148 (5) | 0.0117 (5) | 0.0019 (4) | 0.0002 (4) | −0.0005 (4) |
C2 | 0.0165 (5) | 0.0186 (6) | 0.0151 (5) | 0.0001 (4) | 0.0041 (4) | 0.0010 (4) |
C3 | 0.0195 (6) | 0.0164 (5) | 0.0147 (5) | −0.0015 (4) | 0.0025 (4) | 0.0011 (4) |
C4 | 0.0190 (6) | 0.0157 (6) | 0.0130 (5) | 0.0036 (4) | 0.0006 (4) | −0.0003 (4) |
C5 | 0.0158 (5) | 0.0221 (6) | 0.0150 (5) | 0.0016 (4) | 0.0029 (4) | 0.0009 (4) |
C6 | 0.0159 (5) | 0.0179 (6) | 0.0161 (5) | −0.0017 (4) | 0.0019 (4) | 0.0011 (4) |
C7 | 0.0243 (6) | 0.0213 (6) | 0.0225 (6) | 0.0003 (5) | 0.0121 (5) | −0.0023 (5) |
C8 | 0.0256 (7) | 0.0242 (7) | 0.0327 (7) | −0.0112 (5) | 0.0095 (6) | −0.0013 (6) |
S1—P1 | 1.9139 (4) | C4—C5 | 1.3857 (17) |
P1—O3 | 1.5624 (9) | C5—C6 | 1.3889 (17) |
P1—O2 | 1.5663 (9) | C5—H5 | 0.9599 |
P1—O1 | 1.6110 (9) | C6—H6 | 0.9596 |
O1—C1 | 1.3966 (14) | C7—H7A | 0.9600 |
O2—C7 | 1.4562 (15) | C7—H7B | 0.9600 |
O3—C8 | 1.4594 (15) | C7—H7C | 0.9599 |
O4—N1 | 1.2257 (15) | C7—H7D | 0.9601 |
O5—N1 | 1.2277 (15) | C7—H7E | 0.9600 |
N1—C4 | 1.4701 (15) | C7—H7F | 0.9600 |
C1—C6 | 1.3877 (17) | C8—H8A | 0.9600 |
C1—C2 | 1.3880 (17) | C8—H8B | 0.9601 |
C2—C3 | 1.3852 (17) | C8—H8C | 0.9600 |
C2—H2 | 0.9601 | C8—H8D | 0.9600 |
C3—C4 | 1.3891 (17) | C8—H8E | 0.9600 |
C3—H3 | 0.9600 | C8—H8F | 0.9600 |
O3—P1—O2 | 103.51 (5) | O2—C7—H7D | 109.5 |
O3—P1—O1 | 106.57 (5) | H7A—C7—H7D | 141.1 |
O2—P1—O1 | 99.57 (5) | H7B—C7—H7D | 56.3 |
O3—P1—S1 | 112.45 (4) | H7C—C7—H7D | 56.3 |
O2—P1—S1 | 118.62 (4) | O2—C7—H7E | 109.5 |
O1—P1—S1 | 114.56 (4) | H7A—C7—H7E | 56.3 |
C1—O1—P1 | 121.75 (7) | H7B—C7—H7E | 141.1 |
C7—O2—P1 | 119.52 (8) | H7C—C7—H7E | 56.2 |
C8—O3—P1 | 121.85 (8) | H7D—C7—H7E | 109.5 |
O4—N1—O5 | 123.89 (11) | O2—C7—H7F | 109.5 |
O4—N1—C4 | 118.15 (11) | H7A—C7—H7F | 56.3 |
O5—N1—C4 | 117.96 (11) | H7B—C7—H7F | 56.2 |
C6—C1—C2 | 122.36 (11) | H7C—C7—H7F | 141.1 |
C6—C1—O1 | 118.57 (11) | H7D—C7—H7F | 109.5 |
C2—C1—O1 | 118.97 (10) | H7E—C7—H7F | 109.5 |
C3—C2—C1 | 118.95 (11) | O3—C8—H8A | 109.5 |
C3—C2—H2 | 120.5 | O3—C8—H8B | 109.5 |
C1—C2—H2 | 120.5 | H8A—C8—H8B | 109.5 |
C2—C3—C4 | 118.45 (11) | O3—C8—H8C | 109.5 |
C2—C3—H3 | 120.9 | H8A—C8—H8C | 109.5 |
C4—C3—H3 | 120.7 | H8B—C8—H8C | 109.5 |
C5—C4—C3 | 122.90 (11) | O3—C8—H8D | 109.5 |
C5—C4—N1 | 118.67 (11) | H8A—C8—H8D | 141.1 |
C3—C4—N1 | 118.42 (11) | H8B—C8—H8D | 56.3 |
C4—C5—C6 | 118.42 (11) | H8C—C8—H8D | 56.2 |
C4—C5—H5 | 120.6 | O3—C8—H8E | 109.5 |
C6—C5—H5 | 120.9 | H8A—C8—H8E | 56.3 |
C1—C6—C5 | 118.90 (11) | H8B—C8—H8E | 141.1 |
C1—C6—H6 | 120.5 | H8C—C8—H8E | 56.3 |
C5—C6—H6 | 120.6 | H8D—C8—H8E | 109.5 |
O2—C7—H7A | 109.5 | O3—C8—H8F | 109.5 |
O2—C7—H7B | 109.5 | H8A—C8—H8F | 56.3 |
H7A—C7—H7B | 109.5 | H8B—C8—H8F | 56.2 |
O2—C7—H7C | 109.5 | H8C—C8—H8F | 141.1 |
H7A—C7—H7C | 109.5 | H8D—C8—H8F | 109.5 |
H7B—C7—H7C | 109.5 | H8E—C8—H8F | 109.5 |
O3—P1—O1—C1 | 82.55 (9) | C1—C2—C3—C4 | 0.69 (17) |
O2—P1—O1—C1 | −170.15 (9) | C2—C3—C4—C5 | −1.21 (18) |
S1—P1—O1—C1 | −42.48 (10) | C2—C3—C4—N1 | 178.21 (10) |
O3—P1—O2—C7 | 178.51 (9) | O4—N1—C4—C5 | −169.94 (11) |
O1—P1—O2—C7 | 68.76 (9) | O5—N1—C4—C5 | 10.23 (16) |
S1—P1—O2—C7 | −56.14 (10) | O4—N1—C4—C3 | 10.62 (16) |
O2—P1—O3—C8 | −47.32 (11) | O5—N1—C4—C3 | −169.21 (11) |
O1—P1—O3—C8 | 57.15 (10) | C3—C4—C5—C6 | 0.59 (18) |
S1—P1—O3—C8 | −176.54 (9) | N1—C4—C5—C6 | −178.83 (10) |
P1—O1—C1—C6 | −93.16 (12) | C2—C1—C6—C5 | −1.05 (18) |
P1—O1—C1—C2 | 90.42 (12) | O1—C1—C6—C5 | −177.34 (10) |
C6—C1—C2—C3 | 0.42 (18) | C4—C5—C6—C1 | 0.54 (17) |
O1—C1—C2—C3 | 176.69 (10) |
C8H9ClNO5PS | F(000) = 608 |
Mr = 297.66 | Dx = 1.570 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 100 reflections |
a = 10.9108 (14) Å | θ = 9.5–16.2° |
b = 17.0968 (19) Å | µ = 0.60 mm−1 |
c = 6.8940 (6) Å | T = 295 K |
β = 101.65 (5)° | Block cut from larger crystal, colorless |
V = 1259.5 (2) Å3 | 0.49 × 0.48 × 0.43 mm |
Z = 4 |
Bruker P4 diffractometer | 1841 reflections with I > 2σ(I) |
Radiation source: normal-focus sealed tube | Rint = 0.025 |
Graphite monochromator | θmax = 25.0°, θmin = 1.9° |
θ/2θ; a little over one quadrant of data was collected. scans | h = −12→12 |
Absorption correction: integration (XSHELL; Bruker, 1999) | k = −1→20 |
Tmin = 0.706, Tmax = 0.791 | l = −1→8 |
2989 measured reflections | 3 standard reflections every 100 reflections |
2206 independent reflections | intensity decay: 2.1% |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.035 | H-atom parameters constrained |
wR(F2) = 0.098 | w = 1/[σ2(Fo2) + (0.0494P)2 + 0.3678P] where P = (Fo2 + 2Fc2)/3 |
S = 1.04 | (Δ/σ)max = 0.001 |
2206 reflections | Δρmax = 0.35 e Å−3 |
155 parameters | Δρmin = −0.21 e Å−3 |
0 restraints | Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.097 (4) |
C8H9ClNO5PS | V = 1259.5 (2) Å3 |
Mr = 297.66 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 10.9108 (14) Å | µ = 0.60 mm−1 |
b = 17.0968 (19) Å | T = 295 K |
c = 6.8940 (6) Å | 0.49 × 0.48 × 0.43 mm |
β = 101.65 (5)° |
Bruker P4 diffractometer | 1841 reflections with I > 2σ(I) |
Absorption correction: integration (XSHELL; Bruker, 1999) | Rint = 0.025 |
Tmin = 0.706, Tmax = 0.791 | 3 standard reflections every 100 reflections |
2989 measured reflections | intensity decay: 2.1% |
2206 independent reflections |
R[F2 > 2σ(F2)] = 0.035 | 0 restraints |
wR(F2) = 0.098 | H-atom parameters constrained |
S = 1.04 | Δρmax = 0.35 e Å−3 |
2206 reflections | Δρmin = −0.21 e Å−3 |
155 parameters |
Experimental. A little over one quadrant of data was collected. |
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor, wR, and goodness of fit, S, are based on F2, conventional R-factors, R, are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Cl1 | 0.37550 (7) | 0.53209 (4) | 0.66806 (11) | 0.0716 (3) | |
S1 | 0.26547 (6) | 0.41051 (4) | 0.11872 (10) | 0.0601 (2) | |
P1 | 0.14382 (5) | 0.39892 (3) | 0.27916 (8) | 0.0475 (2) | |
O1 | 0.19664 (14) | 0.40801 (9) | 0.5140 (2) | 0.0512 (4) | |
O2 | 0.03273 (15) | 0.45803 (11) | 0.2539 (3) | 0.0628 (5) | |
O3 | 0.07694 (16) | 0.31815 (10) | 0.2504 (2) | 0.0624 (5) | |
O4 | 0.7479 (2) | 0.34501 (16) | 0.9468 (4) | 0.1053 (8) | |
O5 | 0.67985 (19) | 0.22736 (14) | 0.9190 (4) | 0.0898 (7) | |
N1 | 0.6654 (2) | 0.29774 (16) | 0.8946 (3) | 0.0685 (6) | |
C1 | 0.31313 (19) | 0.38014 (13) | 0.6058 (3) | 0.0449 (5) | |
C2 | 0.4053 (2) | 0.43300 (13) | 0.6867 (3) | 0.0483 (5) | |
C3 | 0.5212 (2) | 0.40649 (14) | 0.7826 (3) | 0.0549 (6) | |
H3 | 0.5863 | 0.4425 | 0.8385 | 0.066* | |
C4 | 0.5407 (2) | 0.32679 (14) | 0.7954 (3) | 0.0512 (5) | |
C5 | 0.4499 (2) | 0.27324 (14) | 0.7199 (3) | 0.0541 (6) | |
H5 | 0.4662 | 0.2181 | 0.7340 | 0.065* | |
C6 | 0.3350 (2) | 0.30057 (14) | 0.6240 (3) | 0.0531 (6) | |
H6 | 0.2698 | 0.2644 | 0.5697 | 0.064* | |
C7 | 0.0557 (3) | 0.54154 (17) | 0.2618 (5) | 0.0766 (8) | |
H7A | −0.0224 | 0.5691 | 0.2440 | 0.115* | |
H7B | 0.1063 | 0.5547 | 0.3883 | 0.115* | |
H7C | 0.0987 | 0.5560 | 0.1588 | 0.115* | |
C8 | −0.0247 (3) | 0.2976 (2) | 0.3494 (4) | 0.0788 (8) | |
H8A | −0.0528 | 0.2455 | 0.3122 | 0.118* | |
H8B | 0.0049 | 0.2999 | 0.4902 | 0.118* | |
H8C | −0.0928 | 0.3336 | 0.3113 | 0.118* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Cl1 | 0.0773 (5) | 0.0498 (4) | 0.0818 (5) | −0.0019 (3) | 0.0020 (4) | −0.0046 (3) |
S1 | 0.0642 (4) | 0.0630 (4) | 0.0583 (4) | 0.0049 (3) | 0.0248 (3) | 0.0039 (3) |
P1 | 0.0456 (3) | 0.0517 (4) | 0.0448 (3) | 0.0014 (2) | 0.0084 (2) | −0.0007 (2) |
O1 | 0.0464 (8) | 0.0614 (10) | 0.0451 (8) | 0.0036 (7) | 0.0078 (7) | −0.0047 (7) |
O2 | 0.0514 (9) | 0.0741 (12) | 0.0621 (10) | 0.0137 (8) | 0.0094 (8) | 0.0043 (9) |
O3 | 0.0616 (10) | 0.0664 (11) | 0.0586 (10) | −0.0159 (8) | 0.0110 (8) | −0.0082 (8) |
O4 | 0.0631 (13) | 0.1064 (18) | 0.129 (2) | −0.0085 (12) | −0.0220 (13) | 0.0148 (15) |
O5 | 0.0699 (13) | 0.0825 (15) | 0.1140 (17) | 0.0187 (11) | 0.0117 (12) | 0.0253 (13) |
N1 | 0.0543 (13) | 0.0875 (17) | 0.0624 (13) | 0.0041 (12) | 0.0089 (10) | 0.0145 (12) |
C1 | 0.0446 (11) | 0.0546 (12) | 0.0364 (10) | −0.0005 (9) | 0.0104 (9) | −0.0003 (9) |
C2 | 0.0559 (13) | 0.0492 (12) | 0.0404 (11) | −0.0033 (10) | 0.0109 (9) | −0.0010 (9) |
C3 | 0.0531 (13) | 0.0621 (14) | 0.0473 (12) | −0.0101 (11) | 0.0052 (10) | 0.0005 (11) |
C4 | 0.0486 (12) | 0.0641 (14) | 0.0412 (11) | 0.0003 (10) | 0.0096 (9) | 0.0081 (10) |
C5 | 0.0597 (14) | 0.0505 (12) | 0.0535 (13) | 0.0005 (11) | 0.0147 (11) | 0.0051 (10) |
C6 | 0.0528 (13) | 0.0536 (13) | 0.0525 (13) | −0.0082 (11) | 0.0098 (10) | −0.0017 (11) |
C7 | 0.086 (2) | 0.0673 (17) | 0.0775 (18) | 0.0270 (15) | 0.0189 (16) | 0.0038 (14) |
C8 | 0.0736 (18) | 0.093 (2) | 0.0707 (17) | −0.0266 (16) | 0.0158 (14) | 0.0066 (16) |
Cl1—C2 | 1.725 (2) | C2—C3 | 1.379 (3) |
S1—P1 | 1.9019 (11) | C3—C4 | 1.379 (3) |
P1—O3 | 1.5558 (17) | C3—H3 | 0.9600 |
P1—O2 | 1.5606 (17) | C4—C5 | 1.372 (3) |
P1—O1 | 1.6123 (16) | C5—C6 | 1.375 (3) |
O1—C1 | 1.385 (3) | C5—H5 | 0.9602 |
O2—C7 | 1.449 (3) | C6—H6 | 0.9601 |
O3—C8 | 1.458 (3) | C7—H7A | 0.9600 |
O4—N1 | 1.210 (3) | C7—H7B | 0.9600 |
O5—N1 | 1.221 (3) | C7—H7C | 0.9599 |
N1—C4 | 1.479 (3) | C8—H8A | 0.9600 |
C1—C6 | 1.382 (3) | C8—H8B | 0.9600 |
C1—C2 | 1.383 (3) | C8—H8C | 0.9599 |
O3—P1—O2 | 103.11 (10) | C5—C4—C3 | 123.0 (2) |
O3—P1—O1 | 106.09 (9) | C5—C4—N1 | 118.5 (2) |
O2—P1—O1 | 99.31 (10) | C3—C4—N1 | 118.5 (2) |
O3—P1—S1 | 112.50 (7) | C4—C5—C6 | 118.3 (2) |
O2—P1—S1 | 119.02 (8) | C4—C5—H5 | 120.7 |
O1—P1—S1 | 115.08 (7) | C6—C5—H5 | 121.0 |
C1—O1—P1 | 122.32 (14) | C5—C6—C1 | 120.1 (2) |
C7—O2—P1 | 120.63 (17) | C5—C6—H6 | 120.1 |
C8—O3—P1 | 122.41 (18) | C1—C6—H6 | 119.8 |
O4—N1—O5 | 123.3 (2) | O2—C7—H7A | 109.7 |
O4—N1—C4 | 118.2 (3) | O2—C7—H7B | 109.2 |
O5—N1—C4 | 118.4 (2) | H7A—C7—H7B | 109.5 |
C6—C1—C2 | 120.5 (2) | O2—C7—H7C | 109.5 |
C6—C1—O1 | 120.39 (19) | H7A—C7—H7C | 109.5 |
C2—C1—O1 | 119.0 (2) | H7B—C7—H7C | 109.5 |
C3—C2—C1 | 120.0 (2) | O3—C8—H8A | 109.4 |
C3—C2—Cl1 | 119.95 (18) | O3—C8—H8B | 109.3 |
C1—C2—Cl1 | 120.05 (18) | H8A—C8—H8B | 109.5 |
C4—C3—C2 | 118.1 (2) | O3—C8—H8C | 109.7 |
C4—C3—H3 | 121.0 | H8A—C8—H8C | 109.5 |
C2—C3—H3 | 120.9 | H8B—C8—H8C | 109.5 |
O3—P1—O1—C1 | 87.76 (18) | O1—C1—C2—Cl1 | −1.3 (3) |
O2—P1—O1—C1 | −165.59 (17) | C1—C2—C3—C4 | −0.4 (3) |
S1—P1—O1—C1 | −37.32 (18) | Cl1—C2—C3—C4 | 179.52 (18) |
O3—P1—O2—C7 | −177.31 (19) | C2—C3—C4—C5 | −1.0 (4) |
O1—P1—O2—C7 | 73.6 (2) | C2—C3—C4—N1 | 178.9 (2) |
S1—P1—O2—C7 | −52.0 (2) | O4—N1—C4—C5 | 174.2 (3) |
O2—P1—O3—C8 | −47.1 (2) | O5—N1—C4—C5 | −5.6 (3) |
O1—P1—O3—C8 | 56.8 (2) | O4—N1—C4—C3 | −5.6 (4) |
S1—P1—O3—C8 | −176.54 (18) | O5—N1—C4—C3 | 174.6 (3) |
P1—O1—C1—C6 | −69.6 (2) | C3—C4—C5—C6 | 1.3 (3) |
P1—O1—C1—C2 | 113.28 (19) | N1—C4—C5—C6 | −178.6 (2) |
C6—C1—C2—C3 | 1.5 (3) | C4—C5—C6—C1 | −0.1 (3) |
O1—C1—C2—C3 | 178.6 (2) | C2—C1—C6—C5 | −1.2 (3) |
C6—C1—C2—Cl1 | −178.44 (17) | O1—C1—C6—C5 | −178.3 (2) |
Experimental details
(MeParatI) | (DicapthonII) | |
Crystal data | ||
Chemical formula | C8H10NO5PS | C8H9ClNO5PS |
Mr | 263.20 | 297.66 |
Crystal system, space group | Monoclinic, P21/c | Monoclinic, P21/c |
Temperature (K) | 100 | 295 |
a, b, c (Å) | 7.0232 (3), 21.1563 (8), 7.9679 (3) | 10.9108 (14), 17.0968 (19), 6.8940 (6) |
β (°) | 104.4284 (4) | 101.65 (5) |
V (Å3) | 1146.57 (8) | 1259.5 (2) |
Z | 4 | 4 |
Radiation type | Mo Kα | Mo Kα |
µ (mm−1) | 0.43 | 0.60 |
Crystal size (mm) | 0.53 × 0.45 × 0.31 | 0.49 × 0.48 × 0.43 |
Data collection | ||
Diffractometer | Bruker APEXII diffractometer | Bruker P4 diffractometer |
Absorption correction | Part of the refinement model (ΔF) (SADABS; Bruker, 2008) | Integration (XSHELL; Bruker, 1999) |
Tmin, Tmax | 0.80, 0.88 | 0.706, 0.791 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 13180, 2619, 2489 | 2989, 2206, 1841 |
Rint | 0.017 | 0.025 |
(sin θ/λ)max (Å−1) | 0.650 | 0.595 |
Refinement | ||
R[F2 > 2σ(F2)], wR(F2), S | 0.025, 0.068, 1.05 | 0.035, 0.098, 1.04 |
No. of reflections | 2619 | 2206 |
No. of parameters | 147 | 155 |
H-atom treatment | H-atom parameters constrained | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.32, −0.36 | 0.35, −0.21 |
Computer programs: APEX2 (Bruker, 2008), XSCANS (Bruker, 1996), SADABS and SAINT (Bruker, 2008), SHELXS97 (Sheldrick, 2008), SHELXTL/PC (Sheldrick, 2008) and SHELXL97 (Sheldrick, 2008).
Atoms | (I) | (II) | Δ* | Δ/σ* |
P1—O1 | 1.6110 (9) | 1.6123 (16) | -0.0013 | -0.81 |
P1—O2 | 1.5663 (9) | 1.5606 (17) | 0.0057 | 3.4 |
P1—O3 | 1.5624 (9) | 1.5558 (17) | 0.0066 | 3.9 |
O1—C1 | 1.3966 (14) | 1.385 (3) | 0.0116 | 3.9 |
O2—C7 | 1.4562 (15) | 1.449 (3) | 0.0072 | 2.4 |
O3—C8 | 1.4594 (15) | 1.458 (3) | 0.0014 | 0.47 |
C2—C1 | 1.3880 (17) | 1.383 (3) | 0.0050 | 1.7 |
C2—C3 | 1.3852 (17) | 1.379 (3) | 0.0062 | 2.1 |
C2—C1—O1 | 118.97 (10) | 119.0 (2) | -0.30 | -0.15 |
C6—C1—O1 | 118.57 (11) | 120.39 (19) | -1.82 | -9.1 |
C6—C1—C2 | 122.36 (11) | 120.5 (2) | 1.86 | 9.3 |
C3—C2—C1 | 118.95 (11) | 120.0 (2) | -1.05 | -5.3 |
C4—C3—C2 | 118.45 (11) | 118.1 (2) | 0.35 | 1.8 |
C3—C4—N1 | 118.42 (10) | 118.5 (2) | -0.08 | -0.40 |
C5—C4—N1 | 118.67 (11) | 118.5 (2) | 0.17 | 0.85 |
C5—C4—C3 | 122.90 (11) | 123.0 (2) | -0.10 | -0.50 |
C4—C5—C6 | 118.42 (11) | 118.3 (2) | 0.12 | 0.60 |
C5—C6—C1 | 118.90 (11) | 120.1 (2) | -1.20 | -6.0 |
S1—P1—O1—C1 | -42.48 (10) | -37.32 (18) | -5.16 | -28.7 |
P1—O1—C1—C6 | -93.13 (12) | -69.6 (2) | -23.56 | -117.8 |
P1—O1—C1—C2 | 90.42 (12) | 113.28 (19) | -22.86 | -120.3 |
Note: (*) D = (I) - (II); σ = σ of (II) (i.e. the larger value). |
Pesticide | Reference | R1 | R2 | R3 | R4 | C2—C1—O1—P1 |
Methyl parathion | This work | OMe | OMe | NO2 | H | 90.42 (12) |
Dicapthon | This work | OMe | OMe | NO2 | H | 113.3 (2) |
Ronnel | Baughman & Jacobson (1975) | OMe | OMe | Cl | Cl | 110.5 |
Bromophos | Baughman & Jacobson (1976) | OMe | OMe | Br | Cl | 103.4 |
Chlorpyifos | Baughman et al. (1978) | OEt | OEt | Cl | H | 145.9 |
IPAT | Lapp & Jacobson (1980a) | OMe | OiPr | Cl | Cl | 164.9 |
Leptophos | Lapp & Jacobson (1980b) | Ph | OMe | Br | Cl | 100.1 |
Iodofenphos | Baughman & Yu (1982) | OMe | OMe | I | Cl | 116.9 (8) |
In each case, per the Scheme, R3 = NO2 and R4 = R5 = H (i.e. no Cl). Notation used on column headings for angluar values about central C atoms is `C1'≡C2—C1—C6 etc. top
Codea | R1 | R2 | C1 | C2 | C3 | C4 | C5 | C6 | C1–C6 with C4/N1/O4/O5 |
MeParatb | OMe | OMe | 122.4 (1) | 118.0 (1) | 118.5 (1) | 122.9 (1) | 118.4 (1) | 118.9 (1) | 10.67 (8) |
ICEROYc, Molecule 1 | 121.6 | 119.5 | 117.9 | 122.0 | 119.3 | 118.9 | ~2 | ||
ICEROYc, Molecule 2 | 122.2 | 118.6 | 118.9 | 122.8 | 119.2 | 118.9 | |||
ICERUEc | 122.1 | 119.3 | 118.2 | 122.5 | 119.0 | 118.8 | ~4 | ||
ENPHPS | C6H5 | OEt | 122.5 | 119.6 | 118.0 | 122.7 | 119.5 | 117.7 | ~14 |
XOYWUDd | C6H5 | 118.3 | 119.6 | 118.0 | 122.9 | 118.3 | 119.7 | ~3 |
Notes: (a) from the Cambridge Structural Database (Version 5.35 [OK?]; Allen, 2002); s.u. values not available but likely ~0.5°; (b) this work; (c) R1 = -O—C(Me)CH2C(Me)O- and R2 = bidentate; (d R2 = -NHC(CH2)Np (Np is ???). |