Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S0108270102005905/bm1489sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S0108270102005905/bm1489Isup2.hkl |
CCDC reference: 188615
The synthesis of (I) has been described by Jansson et al. (1990). Crystals of (I) were obtained by slow evaporation at ambient temperature from a solution of the disaccharide in methanol-water.
Please check added text below. The absolute configuration of the molecule cannot be deduced from the diffraction data collected in this experiment. It can, however, be assigned from the known absolute configuration of the reactants. The O—H distances were set at 0.82 Å, while the C—H distances were set at 0.98, 0.97 and 0.96 Å for CH, CH2 and CH3, respectively. One of the H atoms (HO3r) was refined freely, with an O3r—HO3r distance restraint of 0.82 Å. For methyl and hydroxyl H atoms, Uiso(H) = 1.5Ueq(C, O), while for other H atoms, Uiso(H) = 1.2Ueq(C).
Data collection: EXPOSE in IPDS (Stoe & Cie, 1997); cell refinement: CELL in IPDS; data reduction: INTEGRATE in IPDS; program(s) used to solve structure: SHELXS86 (Sheldrick, 1990); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: DIAMOND (Bergerhoff, 1996) and SCHAKAL (Keller, 1992); software used to prepare material for publication: SHELXL97 and PLATON98 (Spek, 1998).
C13H24O10 | F(000) = 364 |
Mr = 340.32 | Dx = 1.502 Mg m−3 |
Monoclinic, P21 | Mo Kα radiation, λ = 0.71073 Å |
a = 7.180 (4) Å | Cell parameters from 628 reflections |
b = 8.430 (5) Å | θ = 2.5–26.0° |
c = 12.688 (10) Å | µ = 0.13 mm−1 |
β = 101.46 (8)° | T = 293 K |
V = 752.6 (8) Å3 | Thin prismatic flake, colourless |
Z = 2 | 0.12 × 0.08 × 0.03 mm |
Stoe IPDS image-plate diffractometer | 1542 independent reflections |
Radiation source: fine-focus sealed tube | 1251 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.071 |
Detector resolution: 6.0 pixels mm-1 | θmax = 25.8°, θmin = 2.9° |
area detector scans | h = −8→8 |
Absorption correction: numerical (X-RED; Stoe & Cie, 1997) | k = −10→10 |
Tmin = 0.97, Tmax = 0.99 | l = −15→15 |
11346 measured reflections |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: mixed |
R[F2 > 2σ(F2)] = 0.037 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.087 | w = 1/[σ2(Fo2) + (0.05P)2] where P = (Fo2 + 2Fc2)/3 |
S = 1.07 | (Δ/σ)max = 0.001 |
1542 reflections | Δρmax = 0.20 e Å−3 |
219 parameters | Δρmin = −0.19 e Å−3 |
4 restraints | Extinction correction: SHELXL97 (Sheldrick, 1997), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.022 (5) |
C13H24O10 | V = 752.6 (8) Å3 |
Mr = 340.32 | Z = 2 |
Monoclinic, P21 | Mo Kα radiation |
a = 7.180 (4) Å | µ = 0.13 mm−1 |
b = 8.430 (5) Å | T = 293 K |
c = 12.688 (10) Å | 0.12 × 0.08 × 0.03 mm |
β = 101.46 (8)° |
Stoe IPDS image-plate diffractometer | 1542 independent reflections |
Absorption correction: numerical (X-RED; Stoe & Cie, 1997) | 1251 reflections with I > 2σ(I) |
Tmin = 0.97, Tmax = 0.99 | Rint = 0.071 |
11346 measured reflections |
R[F2 > 2σ(F2)] = 0.037 | 4 restraints |
wR(F2) = 0.087 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.07 | Δρmax = 0.20 e Å−3 |
1542 reflections | Δρmin = −0.19 e Å−3 |
219 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. Two separate data sets were collected and merged according to the Laue symmetry before refinement; a total of 1275 Friedel equivalents were present in the data before averaging. All non-H atoms were refined with anisotropic displacement parameters subject to rigid-bond restraints (Rollett, 1970; Sheldrick, 1997). Methyl and hydroxyl H atoms were located from difference Fourier syntheses, while others were placed geometrically. The H atoms on the methyl C atoms were refined as rigid groups rotating around the C—X bond, where X is the non-H atom connected to the C atom. Similarly, the hydroxyl H atom was allowed to rotate about the local O—X vector. |
x | y | z | Uiso*/Ueq | ||
C1r | 0.3258 (5) | 0.6045 (4) | 0.8460 (3) | 0.0161 (7) | |
H1r | 0.4374 | 0.6457 | 0.8958 | 0.019* | |
C2r | 0.3098 (5) | 0.6885 (4) | 0.7392 (3) | 0.0139 (7) | |
H2r | 0.4189 | 0.6602 | 0.7073 | 0.017* | |
O2r | 0.3103 (3) | 0.8577 (3) | 0.75763 (19) | 0.0185 (6) | |
C3r | 0.1239 (4) | 0.6417 (4) | 0.6609 (3) | 0.0159 (7) | |
H3r | 0.1268 | 0.5276 | 0.6464 | 0.019* | |
O3r | 0.1048 (3) | 0.7262 (2) | 0.5610 (2) | 0.0170 (5) | |
HO3r | 0.103 (6) | 0.8220 (9) | 0.572 (3) | 0.026* | |
C4r | −0.0415 (5) | 0.6765 (4) | 0.7169 (3) | 0.0158 (8) | |
H4r | −0.0378 | 0.7896 | 0.7351 | 0.019* | |
O4r | −0.2220 (3) | 0.6438 (3) | 0.64683 (19) | 0.0178 (6) | |
HO4r | −0.2367 | 0.5476 | 0.6402 | 0.023* | |
C5r | −0.0151 (5) | 0.5823 (4) | 0.8211 (3) | 0.0164 (8) | |
H5r | −0.0080 | 0.4687 | 0.8059 | 0.020* | |
O5r | 0.1595 (3) | 0.6339 (3) | 0.89106 (18) | 0.0164 (5) | |
Om | 0.3539 (3) | 0.4447 (3) | 0.8294 (2) | 0.0173 (5) | |
Cm | 0.3868 (6) | 0.3518 (5) | 0.9270 (3) | 0.0231 (8) | |
HmA | 0.4201 | 0.2453 | 0.9112 | 0.035* | |
HmB | 0.2736 | 0.3502 | 0.9564 | 0.035* | |
HmC | 0.4888 | 0.3980 | 0.9782 | 0.035* | |
C6r | −0.1757 (5) | 0.6135 (5) | 0.8816 (3) | 0.0183 (7) | |
H7rA | −0.1430 | 0.5687 | 0.9525 | 0.027* | |
H7rB | −0.2908 | 0.5655 | 0.8435 | 0.027* | |
H7rC | −0.1942 | 0.7258 | 0.8870 | 0.027* | |
C1g | 0.4264 (5) | 0.9485 (4) | 0.7032 (3) | 0.0167 (8) | |
H1g | 0.4666 | 0.8851 | 0.6469 | 0.020* | |
C2g | 0.3191 (5) | 1.0972 (4) | 0.6546 (3) | 0.0153 (7) | |
H2g | 0.2876 | 1.1637 | 0.7120 | 0.018* | |
O2g | 0.1459 (3) | 1.0434 (3) | 0.5841 (2) | 0.0198 (6) | |
HO2g | 0.1256 | 1.0976 | 0.5293 | 0.030* | |
C3g | 0.4465 (5) | 1.1878 (4) | 0.5940 (3) | 0.0151 (7) | |
H3g | 0.4818 | 1.1176 | 0.5396 | 0.018* | |
O3g | 0.3557 (4) | 1.3248 (3) | 0.5418 (2) | 0.0194 (6) | |
HO3g | 0.3159 | 1.3052 | 0.4780 | 0.029* | |
C4g | 0.6290 (5) | 1.2355 (4) | 0.6750 (3) | 0.0158 (7) | |
H4g | 0.5930 | 1.3064 | 0.7288 | 0.019* | |
O4g | 0.7620 (3) | 1.3174 (3) | 0.6235 (2) | 0.0181 (6) | |
HO4g | 0.7542 | 1.2829 | 0.5623 | 0.027* | |
C5g | 0.7211 (5) | 1.0859 (4) | 0.7327 (3) | 0.0176 (8) | |
H5g | 0.7628 | 1.0173 | 0.6795 | 0.021* | |
O5g | 0.5886 (3) | 0.9994 (3) | 0.7813 (2) | 0.0184 (6) | |
C6g | 0.8932 (5) | 1.1232 (5) | 0.8216 (3) | 0.0195 (8) | |
H6gA | 0.9362 | 1.0265 | 0.8602 | 0.023* | |
H6gB | 0.9959 | 1.1624 | 0.7893 | 0.023* | |
O6g | 0.8504 (4) | 1.2380 (3) | 0.8954 (2) | 0.0218 (6) | |
HO6g | 0.8449 | 1.1946 | 0.9525 | 0.033* |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1r | 0.0090 (16) | 0.0190 (18) | 0.0213 (18) | −0.0040 (14) | 0.0057 (14) | −0.0014 (16) |
C2r | 0.0101 (16) | 0.0114 (18) | 0.0199 (18) | 0.0018 (13) | 0.0021 (14) | 0.0002 (14) |
O2r | 0.0149 (13) | 0.0192 (13) | 0.0221 (13) | −0.0026 (10) | 0.0051 (11) | −0.0004 (11) |
C3r | 0.0108 (17) | 0.0189 (18) | 0.0180 (17) | −0.0011 (15) | 0.0030 (15) | −0.0022 (15) |
O3r | 0.0143 (12) | 0.0168 (13) | 0.0205 (12) | 0.0002 (11) | 0.0048 (10) | 0.0008 (11) |
C4r | 0.0116 (17) | 0.0144 (17) | 0.0209 (18) | 0.0012 (13) | 0.0023 (15) | −0.0002 (14) |
O4r | 0.0125 (12) | 0.0181 (13) | 0.0221 (13) | −0.0013 (10) | 0.0016 (11) | −0.0012 (11) |
C5r | 0.0100 (16) | 0.0201 (19) | 0.0180 (18) | −0.0015 (13) | 0.0001 (15) | −0.0020 (15) |
O5r | 0.0115 (12) | 0.0184 (13) | 0.0196 (12) | 0.0014 (10) | 0.0037 (10) | −0.0005 (11) |
Om | 0.0142 (12) | 0.0159 (12) | 0.0224 (13) | 0.0012 (10) | 0.0049 (10) | 0.0006 (11) |
Cm | 0.025 (2) | 0.021 (2) | 0.0232 (19) | 0.0020 (17) | 0.0050 (17) | 0.0029 (17) |
C6r | 0.0181 (17) | 0.0182 (18) | 0.0197 (17) | 0.0021 (16) | 0.0065 (15) | 0.0028 (16) |
C1g | 0.0126 (17) | 0.0169 (19) | 0.0199 (18) | −0.0042 (15) | 0.0015 (14) | 0.0006 (16) |
C2g | 0.0105 (16) | 0.0137 (18) | 0.0209 (17) | −0.0037 (14) | 0.0015 (14) | −0.0011 (15) |
O2g | 0.0137 (12) | 0.0179 (14) | 0.0257 (14) | −0.0019 (11) | −0.0013 (11) | 0.0028 (11) |
C3g | 0.0110 (16) | 0.0141 (18) | 0.0204 (18) | −0.0018 (13) | 0.0035 (15) | −0.0001 (14) |
O3g | 0.0174 (13) | 0.0171 (13) | 0.0227 (13) | 0.0007 (11) | 0.0014 (11) | 0.0013 (11) |
C4g | 0.0129 (17) | 0.0173 (18) | 0.0180 (17) | −0.0028 (15) | 0.0053 (15) | 0.0004 (16) |
O4g | 0.0133 (12) | 0.0196 (14) | 0.0221 (13) | −0.0018 (10) | 0.0055 (11) | 0.0018 (11) |
C5g | 0.0140 (17) | 0.018 (2) | 0.0210 (18) | −0.0013 (14) | 0.0030 (15) | 0.0027 (16) |
O5g | 0.0124 (11) | 0.0195 (13) | 0.0229 (13) | −0.0006 (10) | 0.0023 (10) | 0.0003 (11) |
C6g | 0.0200 (18) | 0.0151 (18) | 0.0235 (19) | −0.0014 (16) | 0.0044 (16) | −0.0006 (16) |
O6g | 0.0215 (13) | 0.0203 (14) | 0.0227 (13) | −0.0011 (11) | 0.0023 (12) | 0.0026 (12) |
C1r—Om | 1.385 (5) | C6r—H7rB | 0.9600 |
C1r—O5r | 1.443 (4) | C6r—H7rC | 0.9600 |
C1r—C2r | 1.514 (5) | C1g—O5g | 1.436 (4) |
C1r—H1r | 0.9800 | C1g—C2g | 1.535 (5) |
C2r—O2r | 1.445 (4) | C1g—H1g | 0.9800 |
C2r—C3r | 1.548 (5) | C2g—O2g | 1.453 (4) |
C2r—H2r | 0.9800 | C2g—C3g | 1.513 (5) |
O2r—C1g | 1.409 (4) | C2g—H2g | 0.9800 |
C3r—O3r | 1.437 (4) | O2g—HO2g | 0.8200 |
C3r—C4r | 1.528 (4) | C3g—O3g | 1.423 (4) |
C3r—H3r | 0.9800 | C3g—C4g | 1.549 (5) |
O3r—HO3r | 0.820 (12) | C3g—H3g | 0.9800 |
C4r—O4r | 1.445 (4) | O3g—HO3g | 0.8200 |
C4r—C5r | 1.522 (5) | C4g—O4g | 1.436 (4) |
C4r—H4r | 0.9800 | C4g—C5g | 1.540 (5) |
O4r—HO4r | 0.8200 | C4g—H4g | 0.9800 |
C5r—O5r | 1.452 (4) | O4g—HO4g | 0.8200 |
C5r—C6r | 1.530 (5) | C5g—O5g | 1.432 (4) |
C5r—H5r | 0.9800 | C5g—C6g | 1.531 (5) |
Om—Cm | 1.443 (4) | C5g—H5g | 0.9800 |
Cm—HmA | 0.9600 | C6g—O6g | 1.421 (4) |
Cm—HmB | 0.9600 | C6g—H6gA | 0.9700 |
Cm—HmC | 0.9600 | C6g—H6gB | 0.9700 |
C6r—H7rA | 0.9600 | O6g—HO6g | 0.8200 |
Om—C1r—O5r | 112.6 (3) | C5r—C6r—H7rC | 109.5 |
Om—C1r—C2r | 107.9 (3) | H7rA—C6r—H7rC | 109.5 |
O5r—C1r—C2r | 110.6 (3) | H7rB—C6r—H7rC | 109.5 |
Om—C1r—H1r | 108.6 | O2r—C1g—O5g | 107.5 (3) |
O5r—C1r—H1r | 108.6 | O2r—C1g—C2g | 110.0 (3) |
C2r—C1r—H1r | 108.6 | O5g—C1g—C2g | 107.8 (3) |
O2r—C2r—C1r | 108.6 (3) | O2r—C1g—H1g | 110.5 |
O2r—C2r—C3r | 109.3 (3) | O5g—C1g—H1g | 110.5 |
C1r—C2r—C3r | 110.9 (3) | C2g—C1g—H1g | 110.5 |
O2r—C2r—H2r | 109.3 | O2g—C2g—C3g | 112.0 (3) |
C1r—C2r—H2r | 109.3 | O2g—C2g—C1g | 107.0 (3) |
C3r—C2r—H2r | 109.3 | C3g—C2g—C1g | 108.1 (3) |
C1g—O2r—C2r | 116.0 (3) | O2g—C2g—H2g | 109.9 |
O3r—C3r—C4r | 111.5 (3) | C3g—C2g—H2g | 109.9 |
O3r—C3r—C2r | 111.0 (3) | C1g—C2g—H2g | 109.9 |
C4r—C3r—C2r | 107.7 (3) | C2g—O2g—HO2g | 109.5 |
O3r—C3r—H3r | 108.9 | O3g—C3g—C2g | 112.2 (3) |
C4r—C3r—H3r | 108.9 | O3g—C3g—C4g | 110.3 (3) |
C2r—C3r—H3r | 108.9 | C2g—C3g—C4g | 108.1 (3) |
C3r—O3r—HO3r | 110 (3) | O3g—C3g—H3g | 108.7 |
O4r—C4r—C5r | 112.1 (3) | C2g—C3g—H3g | 108.7 |
O4r—C4r—C3r | 111.3 (3) | C4g—C3g—H3g | 108.7 |
C5r—C4r—C3r | 109.2 (3) | C3g—O3g—HO3g | 109.5 |
O4r—C4r—H4r | 108.0 | O4g—C4g—C5g | 110.4 (3) |
C5r—C4r—H4r | 108.0 | O4g—C4g—C3g | 112.0 (3) |
C3r—C4r—H4r | 108.0 | C5g—C4g—C3g | 109.2 (3) |
C4r—O4r—HO4r | 109.5 | O4g—C4g—H4g | 108.4 |
O5r—C5r—C4r | 108.5 (3) | C5g—C4g—H4g | 108.4 |
O5r—C5r—C6r | 106.7 (3) | C3g—C4g—H4g | 108.4 |
C4r—C5r—C6r | 111.7 (3) | C4g—O4g—HO4g | 109.5 |
O5r—C5r—H5r | 109.9 | O5g—C5g—C6g | 107.2 (3) |
C4r—C5r—H5r | 109.9 | O5g—C5g—C4g | 111.3 (3) |
C6r—C5r—H5r | 109.9 | C6g—C5g—C4g | 112.9 (3) |
C1r—O5r—C5r | 112.9 (3) | O5g—C5g—H5g | 108.4 |
C1r—Om—Cm | 113.7 (3) | C6g—C5g—H5g | 108.4 |
Om—Cm—HmA | 109.5 | C4g—C5g—H5g | 108.4 |
Om—Cm—HmB | 109.5 | C5g—O5g—C1g | 111.8 (3) |
HmA—Cm—HmB | 109.5 | O6g—C6g—C5g | 112.1 (3) |
Om—Cm—HmC | 109.5 | O6g—C6g—H6gA | 109.2 |
HmA—Cm—HmC | 109.5 | C5g—C6g—H6gA | 109.2 |
HmB—Cm—HmC | 109.5 | O6g—C6g—H6gB | 109.2 |
C5r—C6r—H7rA | 109.5 | C5g—C6g—H6gB | 109.2 |
C5r—C6r—H7rB | 109.5 | H6gA—C6g—H6gB | 107.9 |
H7rA—C6r—H7rB | 109.5 | C6g—O6g—HO6g | 109.5 |
Om—C1r—C2r—O2r | −171.2 (2) | C2r—O2r—C1g—C2g | 135.9 (3) |
O5r—C1r—C2r—O2r | 65.3 (3) | O2r—C1g—C2g—O2g | −57.4 (3) |
Om—C1r—C2r—C3r | 68.7 (3) | O5g—C1g—C2g—O2g | −174.4 (2) |
O5r—C1r—C2r—C3r | −54.8 (4) | O2r—C1g—C2g—C3g | −178.1 (3) |
C1r—C2r—O2r—C1g | 135.4 (3) | O5g—C1g—C2g—C3g | 64.9 (3) |
C3r—C2r—O2r—C1g | −103.5 (3) | O2g—C2g—C3g—O3g | 59.8 (4) |
O2r—C2r—C3r—O3r | 57.9 (3) | C1g—C2g—C3g—O3g | 177.4 (3) |
C1r—C2r—C3r—O3r | 177.7 (3) | O2g—C2g—C3g—C4g | −178.3 (3) |
O2r—C2r—C3r—C4r | −64.4 (3) | C1g—C2g—C3g—C4g | −60.8 (3) |
C1r—C2r—C3r—C4r | 55.3 (4) | O3g—C3g—C4g—O4g | −59.1 (3) |
O3r—C3r—C4r—O4r | 54.9 (4) | C2g—C3g—C4g—O4g | 177.8 (3) |
C2r—C3r—C4r—O4r | 177.0 (3) | O3g—C3g—C4g—C5g | 178.3 (3) |
O3r—C3r—C4r—C5r | 179.2 (3) | C2g—C3g—C4g—C5g | 55.3 (3) |
C2r—C3r—C4r—C5r | −58.8 (4) | O4g—C4g—C5g—O5g | −177.9 (3) |
O4r—C4r—C5r—O5r | −174.2 (3) | C3g—C4g—C5g—O5g | −54.3 (3) |
C3r—C4r—C5r—O5r | 62.1 (3) | O4g—C4g—C5g—C6g | 61.5 (4) |
O4r—C4r—C5r—C6r | −56.8 (4) | C3g—C4g—C5g—C6g | −174.9 (3) |
C3r—C4r—C5r—C6r | 179.4 (3) | C6g—C5g—O5g—C1g | −176.0 (3) |
Om—C1r—O5r—C5r | −62.0 (4) | C4g—C5g—O5g—C1g | 60.1 (3) |
C2r—C1r—O5r—C5r | 58.8 (4) | O2r—C1g—O5g—C5g | 176.9 (3) |
C4r—C5r—O5r—C1r | −62.2 (4) | C2g—C1g—O5g—C5g | −64.6 (3) |
C6r—C5r—O5r—C1r | 177.3 (3) | O5g—C5g—C6g—O6g | −70.4 (4) |
O5r—C1r—Om—Cm | −62.4 (4) | C4g—C5g—C6g—O6g | 52.5 (4) |
C2r—C1r—Om—Cm | 175.3 (3) | C2r—O2r—C1g—H1g | 13.6 |
C2r—O2r—C1g—O5g | −107.0 (3) | H2r—C2r—O2r—C1g | 16.1 |
D—H···A | D—H | H···A | D···A | D—H···A |
O3r—HO3r···O2g | 0.82 (1) | 1.89 (1) | 2.700 (4) | 168 (4) |
O4r—HO4r···O4gi | 0.82 | 1.952 | 2.768 (4) | 173 |
O2g—HO2g···O3rii | 0.82 | 2.115 | 2.772 (4) | 137 |
O3g—HO3g···O4rii | 0.82 | 2.10 | 2.840 (4) | 151 |
O4g—HO4g···O3riii | 0.82 | 2.081 | 2.806 (4) | 147 |
O6g—HO6g···O5riv | 0.82 | 2.056 | 2.862 (4) | 168 |
Symmetry codes: (i) x−1, y−1, z; (ii) −x, y+1/2, −z+1; (iii) −x+1, y+1/2, −z+1; (iv) −x+1, y+1/2, −z+2. |
Experimental details
Crystal data | |
Chemical formula | C13H24O10 |
Mr | 340.32 |
Crystal system, space group | Monoclinic, P21 |
Temperature (K) | 293 |
a, b, c (Å) | 7.180 (4), 8.430 (5), 12.688 (10) |
β (°) | 101.46 (8) |
V (Å3) | 752.6 (8) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 0.13 |
Crystal size (mm) | 0.12 × 0.08 × 0.03 |
Data collection | |
Diffractometer | Stoe IPDS image-plate diffractometer |
Absorption correction | Numerical (X-RED; Stoe & Cie, 1997) |
Tmin, Tmax | 0.97, 0.99 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 11346, 1542, 1251 |
Rint | 0.071 |
(sin θ/λ)max (Å−1) | 0.613 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.037, 0.087, 1.07 |
No. of reflections | 1542 |
No. of parameters | 219 |
No. of restraints | 4 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.20, −0.19 |
Computer programs: EXPOSE in IPDS (Stoe & Cie, 1997), CELL in IPDS, INTEGRATE in IPDS, SHELXS86 (Sheldrick, 1990), SHELXL97 (Sheldrick, 1997), DIAMOND (Bergerhoff, 1996) and SCHAKAL (Keller, 1992), SHELXL97 and PLATON98 (Spek, 1998).
C1r—Om | 1.385 (5) | O2r—C1g | 1.409 (4) |
C2r—O2r | 1.445 (4) | ||
C1g—O2r—C2r | 116.0 (3) | C3r—O3r—HO3r | 110 (3) |
C1r—C2r—O2r—C1g | 135.4 (3) | O5g—C5g—C6g—O6g | −70.4 (4) |
C3r—C2r—O2r—C1g | −103.5 (3) | C2r—O2r—C1g—H1g | 13.6 |
C2r—O2r—C1g—O5g | −107.0 (3) | H2r—C2r—O2r—C1g | 16.1 |
C2r—O2r—C1g—C2g | 135.9 (3) |
D—H···A | D—H | H···A | D···A | D—H···A |
O3r—HO3r···O2g | 0.820 (10) | 1.892 (10) | 2.700 (4) | 168 (4) |
O4r—HO4r···O4gi | 0.82 | 1.952 | 2.768 (4) | 173 |
O2g—HO2g···O3rii | 0.82 | 2.115 | 2.772 (4) | 137 |
O3g—HO3g···O4rii | 0.82 | 2.095 | 2.840 (4) | 151 |
O4g—HO4g···O3riii | 0.82 | 2.081 | 2.806 (4) | 147 |
O6g—HO6g···O5riv | 0.82 | 2.056 | 2.862 (4) | 168 |
Symmetry codes: (i) x−1, y−1, z; (ii) −x, y+1/2, −z+1; (iii) −x+1, y+1/2, −z+1; (iv) −x+1, y+1/2, −z+2. |
Oligo- and polysaccharides have many important roles in biological systems (Varki, 1993). Many of their effects are mediated by interaction with other biomolecules, in particular, proteins such as antibodies and lectins. An understanding of these interactions on a molecular level requires a detailed knowledge of the conformational preferences of carbohydrates, as well as those of proteins. At present, most of our knowledge of carbohydrate conformation is derived from NMR spectroscopy, but the information is scarce and often difficult to interpret. It is therefore important to obtain further data using other experimental techniques.
Whilst methyl 2-O-β-D-glucopyranosyl-α-L-rhamnopyranoside, (I), does not occur naturally, there are several bacterial polysaccharides and saponins that contain a 2-O-β-D-glucopyranosyl-α-L-rhamnopyranosyl fragment (Doubet & Albersheim, 1992), and which are likely to display conformational similarities with (I). \sch
The solution conformation of (I) has been determined from 1H-1H NOE (nuclear Overhauser effect) and 3JC,H measurements, and compared with the results of in vacuo molecular modelling (Mamyan et al., 1990). The computed lowest-energy conformation differs from the crystal structure and has ϕH ~50° and ψH ~20°. Thus, the difference in ϕH is more than 30°, despite the fact that this torsion angle is considered to be more restricted than ψH because the exo-anomeric effect stabilizes the conformation with ϕH at around 60° (Thøgersen et al., 1982). A comparison with the reported 3JC,H and 1H-1H NOE values shows that, in solution, (I) is much more similar to the calculated structure than the conformation found here for the solid state.
The calculated Cremer & Pople (1975) puckering parameters show that both pyranose rings in (I) are in the expected chair conformations, 1C4 for the rhamnose ring [Q = 0.598 (4) Å, θ = 175.7 (4)° and ϕ = 75 (4)°] and 4C1 for the glucose ring [Q = 0.615 (4) Å, θ = 6.3 (4)° and ϕ = 98 (3)°].
Four distinct hydrogen-bond systems can be deduced from the structural model. The donor···acceptor sequence is, for the first infinite chain along the b axis, composed of: O3r(i)-H···O2g(i)-H···O3r(ii)-H···O2g(ii)-H···O3r(iii)-H··· etc. along the b axis, where the subscripts r and g denote the rhamnose and glucose residues, respectively [symmetry codes: (i) x, y, z; (ii) -x, 1/2 + y, 1 - z; (iii) x, 1 + y, z]. This first hydrogen-bonded chain (Fig. 2) contains an intramolecular hydrogen bond, (O3r—H···O2g); otherwise, all the hydrogen bonds are intermolecular. Secondly, there is a ladder-like structure of hydrogen bonds along the b direction made up of two distinct bonds, O6g(i)-H···O5r(iv) and O6g(iv)-H···O5r(iii) etc. [symmetry code: (iv) 1 - x, 1/2 + y, 2 - z]. The third hydrogen-bonded chain is a three-edged graph connected to atom O3r of the first chain and is composed of O3g(i)-H···O4r(v)-H···O4g(v)-H···O3r(i)-H [symmetry code: (v) 1 - x, y - 1, 1 - z]. These hydrogen bonds link molecules of (I) to form sheets in the ab plane. These sheets are further linked to each other through the fourth hydrogen bond connection, O6g(i)-H···O5r(iv)-H. Please check symmetry codes have been extracted correctly.