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The crystal structure, thermal vibrations and electron density of the peptide
N-acetyl-
L-tyrosine ethyl ester monohydrate, C
13H
17NO
4.H
2O, have been analysed using single-crystal X-ray diffraction data collected at 110 K with Mo
Kα radiation to a resolution of
Å
−1. A CCD area detector was used to collect 98 393 data during one week. A multipolar atom density model was fitted against the 10 189 unique data with
I > 2σ(
I) [
R(
F)
0.027,
wR(
F)
0.020, g.o.f.
0.65] in order to map the valence electron distribution. These deformation densities compare very well with those obtained from conventional diffractometers equipped with scintillation detectors. This work shows that area detectors permit charge density studies in a more routine way than is possible with conventional diffractometers.
Supporting information
| Crystallographic Information File (CIF) Contains datablocks 110, 293, global |
| Structure factor file (CIF format) Contains datablock 110 |
| Structure factor file (CIF format) Contains datablock pepabs |
| Portable Document Format (PDF) file Supplementary material |
CCDC references: 132057; 132058
For both compounds, data collection: SMART system (Siemens, 1995); cell refinement: SMART system (Siemens, 1995); data reduction: SAINT (Siemens, 1995); program(s) used to solve structure: SHELXS86 (Sheldrick, 1990). Program(s) used to refine structure: MOLLY (Hansen, 1978) for 110; SHELXL93 (Sheldrick, 1993) for 293. For both compounds, molecular graphics: SHELXTL-Plus (Sheldrick, 1991); software used to prepare material for publication: SHELXL93 (Sheldrick, 1993).
(110)
N-Acetyl-
L-tyrosine Ethyl Ester Monohydrate
top
Crystal data top
C13H17NO4·H2O | Dx = 1.313 Mg m−3 |
Mr = 269.29 | Mo Kα radiation, λ = 0.71073 Å |
Orthorhombic, P212121 | Cell parameters from 512 reflections |
a = 7.235 (2) Å | θ = 11–45° |
b = 13.056 (4) Å | µ = 0.10 mm−1 |
c = 14.415 (4) Å | T = 110 K |
V = 1361.6 (12) Å3 | Prism, colourless |
Z = 4 | 0.3 × 0.2 × 0.2 mm |
F(000) = 576 | |
Data collection top
Siemens SMART-CCD diffractometer | 10189 reflections with I > 2σ(I) |
Radiation source: rotating anode tube | Rint = 0.027 |
Graphite monochromator | θmax = 51.1°, θmin = 2.1° |
ω scan | h = −15→15 |
98393 measured reflections | k = −28→28 |
14787 independent reflections | l = −31→31 |
Refinement top
Refinement on F | Hydrogen site location: inferred from neighbouring sites |
Least-squares matrix: full | All H-atom parameters refined |
R[F2 > 2σ(F2)] = 0.027 | Calculated w = 1/[σ2(Fo2)] |
wR(F2) = 0.0202 | (Δ/σ)max = −0.006 |
10189 reflections | Δρmax = 0.14 e Å−3 |
544 parameters | Δρmin = −0.17 e Å−3 |
0 restraints | Absolute structure: Flack H D (1983), Acta Cryst. A39, 876-881 |
Primary atom site location: structure-invariant direct methods | Absolute structure parameter: 1.63 (115) |
Secondary atom site location: difference Fourier map | |
Crystal data top
C13H17NO4·H2O | V = 1361.6 (12) Å3 |
Mr = 269.29 | Z = 4 |
Orthorhombic, P212121 | Mo Kα radiation |
a = 7.235 (2) Å | µ = 0.10 mm−1 |
b = 13.056 (4) Å | T = 110 K |
c = 14.415 (4) Å | 0.3 × 0.2 × 0.2 mm |
Data collection top
Siemens SMART-CCD diffractometer | 10189 reflections with I > 2σ(I) |
98393 measured reflections | Rint = 0.027 |
14787 independent reflections | |
Refinement top
R[F2 > 2σ(F2)] = 0.027 | All H-atom parameters refined |
wR(F2) = 0.0202 | Δρmax = 0.14 e Å−3 |
10189 reflections | Δρmin = −0.17 e Å−3 |
544 parameters | Absolute structure: Flack H D (1983), Acta Cryst. A39, 876-881 |
0 restraints | Absolute structure parameter: 1.63 (115) |
Special details top
Experimental. Crystal to Detector distance was 4.51 cm, ω range is 0.2 ° and exposure time
was 20 s at low angles and 40 s at high angles. |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell e.s.d.'s are taken
into account individually in the estimation of e.s.d.'s in distances, angles
and torsion angles; correlations between e.s.d.'s in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s.
planes. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
O1 | 0.23164 (13) | 0.20571 (4) | 0.42334 (4) | 0.0201 (1) | |
O | 0.57804 (8) | 0.03798 (4) | 0.37422 (5) | 0.0170 (1) | |
O2 | 0.19614 (9) | 0.12871 (4) | 0.56155 (4) | 0.0149 (1) | |
OH | −0.02619 (10) | −0.44263 (4) | 0.32345 (4) | 0.0185 (1) | |
HH | 0.031 (4) | −0.491 (2) | 0.364 (2) | 0.023 (2)* | |
N | 0.27588 (7) | 0.01970 (3) | 0.33598 (3) | 0.0123 (1) | |
H | 0.178 (4) | 0.024 (4) | 0.284 (2) | 0.0154 (19)* | |
CA | 0.21351 (6) | 0.01977 (3) | 0.43117 (3) | 0.0109 (1) | |
HA | 0.311 (2) | −0.024 (2) | 0.472 (2) | 0.0137 (17)* | |
C | 0.45551 (7) | 0.03238 (3) | 0.31432 (3) | 0.0128 (1) | |
C2 | 0.21534 (6) | 0.12880 (3) | 0.47020 (3) | 0.0118 (1) | |
CG | 0.00760 (7) | −0.13705 (3) | 0.40996 (3) | 0.0124 (1) | |
CD1 | 0.10085 (7) | −0.21384 (4) | 0.45900 (3) | 0.0149 (1) | |
HD1 | 0.185 (4) | −0.193 (2) | 0.517 (2) | 0.019 (2)* | |
C3 | 0.20187 (9) | 0.22828 (4) | 0.60674 (4) | 0.0178 (1) | |
H31 | 0.094 (4) | 0.273 (2) | 0.573 (2) | 0.022 (2)* | |
H32 | 0.336 (4) | 0.262 (2) | 0.593 (2) | 0.022 (2)* | |
CB | 0.01763 (6) | −0.02579 (3) | 0.43907 (3) | 0.0134 (1) | |
HB1 | −0.026 (5) | −0.016 (2) | 0.510 (2) | 0.0168 (16)* | |
HB2 | −0.076 (4) | 0.021 (2) | 0.398 (2) | 0.0168 (16)* | |
C1 | 0.49913 (8) | 0.04026 (4) | 0.21235 (3) | 0.0205 (1) | |
H11 | 0.636 (5) | 0.011 (3) | 0.198 (2) | 0.025 (3)* | |
H12 | 0.494 (5) | 0.121 (3) | 0.194 (2) | 0.025 (3)* | |
H13 | 0.392 (5) | 0.006 (3) | 0.169 (2) | 0.025 (3)* | |
CZ | −0.01333 (7) | −0.34367 (4) | 0.35433 (3) | 0.0136 (1) | |
CE2 | −0.10879 (8) | −0.26824 (4) | 0.30497 (4) | 0.0178 (1) | |
HE2 | −0.187 (4) | −0.288 (2) | 0.244 (2) | 0.022 (2)* | |
CE1 | 0.09113 (7) | −0.31631 (3) | 0.43194 (3) | 0.0148 (1) | |
HE1 | 0.161 (4) | −0.375 (2) | 0.470 (2) | 0.019 (2)* | |
CD2 | −0.09781 (7) | −0.16620 (3) | 0.33312 (3) | 0.0165 (1) | |
HD2 | −0.171 (2) | −0.107 (2) | 0.295 (2) | 0.021 (2)* | |
C4 | 0.16687 (10) | 0.21257 (4) | 0.70827 (4) | 0.0260 (1) | |
H41 | 0.199 (4) | 0.284 (2) | 0.743 (2) | 0.031 (2)* | |
H42 | 0.255 (4) | 0.154 (2) | 0.737 (2) | 0.031 (2)* | |
H43 | 0.024 (4) | 0.190 (2) | 0.720 (2) | 0.031 (2)* | |
OW | 0.14436 (8) | 0.42520 (4) | 0.43837 (4) | 0.0191 (1) | |
HW1 | 0.118 (4) | 0.432 (2) | 0.504 (2) | 0.024 (2)* | |
HW2 | 0.158 (4) | 0.353 (2) | 0.426 (2) | 0.024 (2)* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
O1 | 0.0355 (3) | 0.01068 (15) | 0.01406 (18) | 0.00118 (18) | 0.00384 (19) | 0.00146 (14) |
O | 0.01324 (19) | 0.0218 (2) | 0.01590 (18) | −0.00126 (16) | −0.00122 (16) | −0.00271 (15) |
O2 | 0.0239 (2) | 0.00970 (14) | 0.01103 (17) | 0.00023 (16) | 0.00065 (16) | −0.00136 (13) |
OH | 0.0253 (3) | 0.01128 (16) | 0.0184 (2) | 0.00086 (16) | −0.00888 (19) | −0.00171 (14) |
N | 0.01215 (16) | 0.01438 (15) | 0.01019 (14) | 0.00012 (13) | −0.00041 (13) | −0.00168 (11) |
CA | 0.01200 (14) | 0.01000 (12) | 0.01083 (13) | 0.00071 (11) | −0.00016 (12) | −0.00123 (10) |
C | 0.01322 (17) | 0.01359 (16) | 0.01150 (15) | −0.00102 (12) | 0.00057 (13) | −0.00267 (12) |
C2 | 0.01517 (17) | 0.00907 (13) | 0.01110 (14) | 0.00049 (12) | 0.00059 (12) | −0.00043 (11) |
CG | 0.01322 (17) | 0.01120 (14) | 0.01278 (15) | −0.00057 (12) | −0.00120 (14) | −0.00101 (11) |
CD1 | 0.01795 (19) | 0.01264 (16) | 0.01410 (15) | −0.0007 (14) | −0.00543 (15) | −0.00081 (12) |
C3 | 0.0280 (3) | 0.01063 (14) | 0.01487 (17) | 0.00054 (15) | 0.00045 (17) | −0.00248 (13) |
CB | 0.01228 (15) | 0.01213 (14) | 0.01579 (15) | −0.00010 (12) | 0.00099 (12) | −0.00257 (12) |
C1 | 0.0227 (2) | 0.0254 (2) | 0.01337 (16) | −0.00591 (17) | 0.00452 (15) | −0.00347 (14) |
CZ | 0.01665 (19) | 0.01093 (15) | 0.01327 (16) | −0.00017 (14) | −0.00403 (15) | −0.00068 (12) |
CE2 | 0.0242 (2) | 0.01213 (16) | 0.01714 (18) | 0.00123 (15) | −0.01004 (17) | −0.00136 (14) |
CE1 | 0.01790 (17) | 0.01205 (14) | 0.01452 (16) | −0.00029 (16) | −0.00571 (15) | 0.00006 (12) |
CD2 | 0.02070 (19) | 0.01174 (15) | 0.01705 (17) | 0.00096 (14) | −0.00726 (16) | −0.00062 (13) |
C4 | 0.0487 (4) | 0.01736 (18) | 0.01260 (17) | 0.0064 (2) | −0.00312 (19) | −0.00303 (14) |
OW | 0.0274 (2) | 0.01407 (16) | 0.01584 (19) | 0.00282 (15) | −0.00161 (16) | 0.00180 (13) |
Geometric parameters (Å, º) top
O1—C2 | 1.2160 (6) | C—C1 | 1.5086 (6) |
O—C | 1.2390 (7) | CG—CD1 | 1.4001 (6) |
O2—C2 | 1.3237 (7) | CG—CD2 | 1.3968 (6) |
O2—C3 | 1.4545 (7) | CG—CB | 1.5144 (5) |
OH—CZ | 1.3697 (6) | CD1—CE1 | 1.3960 (6) |
N—C | 1.3475 (7) | C3—C4 | 1.5008 (7) |
N—CA | 1.4444 (6) | CZ—CE1 | 1.3965 (6) |
CA—C2 | 1.5307 (5) | CZ—CE2 | 1.3984 (6) |
CA—CB | 1.5422 (6) | CE2—CD2 | 1.3948 (6) |
| | | |
C2—O2—C3 | 116.23 (5) | CD1—CG—CB | 121.60 (3) |
C—N—CA | 121.36 (4) | CD2—CG—CB | 120.49 (3) |
N—CA—C2 | 110.35 (3) | CG—CD1—CE1 | 121.40 (4) |
N—CA—CB | 110.85 (3) | O2—C3—C4 | 108.05 (4) |
C2—CA—CB | 109.77 (3) | CG—CB—CA | 113.10 (3) |
O—C—N | 122.42 (5) | CE1—CZ—OH | 122.57 (4) |
O—C—C1 | 121.71 (5) | CE1—CZ—CE2 | 119.71 (4) |
N—C—C1 | 115.87 (4) | OH—CZ—CE2 | 117.71 (4) |
O1—C2—O2 | 124.27 (5) | CZ—CE2—CD2 | 119.70 (4) |
O1—C2—CA | 124.37 (4) | CZ—CE1—CD1 | 119.74 (3) |
O2—C2—CA | 111.36 (4) | CG—CD2—CE2 | 121.53 (4) |
CD1—CG—CD2 | 117.91 (3) | | |
| | | |
O2—C2—CA—N | −167.3 (3) | CD1—CG—CB—CA | 64.53 (5) |
O1—C2—CA—N | 13.34 (6) | CD2—CG—CB—CA | −116.17 (4) |
CG—CB—CA—N | 63.05 (4) | C—N—CA—C2 | 74.16 (4) |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
OW—HW2···O1 | 0.9647 (5) | 2.0097 (5) | 2.9420 (7) | 161.93 (3) |
OW—HW1···Oi | 0.9652 (6) | 1.8280 (6) | 2.7863 (8) | 171.51 (3) |
OH—HH···OWii | 0.9675 (6) | 1.7312 (4) | 2.6912 (7) | 171.10 (3) |
N—H···OHiii | 1.0321 (5) | 1.9454 (5) | 2.9640 (7) | 168.51 (2) |
Symmetry codes: (i) x−1/2, −y+1/2, −z+1; (ii) x, y−1, z; (iii) −x, y+1/2, −z+1/2. |
(293)
N-Acetyl-
L-tyrosine Ethyl Ester Monohydrate
top
Crystal data top
C13H17NO4·H2O | Dx = 1.270 Mg m−3 |
Mr = 269.29 | Mo Kα radiation, λ = 0.71073 Å |
Orthorhombic, P212121 | Cell parameters from 411 reflections |
a = 7.3827 (2) Å | θ = 11–45° |
b = 13.1421 (4) Å | µ = 0.10 mm−1 |
c = 14.5150 (4) Å | T = 293 K |
V = 1408.31 (7) Å3 | Prism, colourless |
Z = 4 | 0.3 × 0.2 × 0.2 mm |
F(000) = 576 | |
Data collection top
Siemens SMART-CCD diffractometer | 2660 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.032 |
Graphite monochromator | θmax = 27.5°, θmin = 2.1° |
ω scans | h = −9→9 |
15638 measured reflections | k = −17→17 |
3241 independent reflections | l = −18→18 |
Refinement top
Refinement on F2 | Hydrogen site location: inferred from neighbouring sites |
Least-squares matrix: full | All H-atom parameters refined |
R[F2 > 2σ(F2)] = 0.038 | Calculated w = 1/[σ2(Fo2) + (0.0411P)2 + 0.2434P] where P = (Fo2 + 2Fc2)/3 |
wR(F2) = 0.100 | (Δ/σ)max = −0.006 |
S = 1.10 | Δρmax = 0.17 e Å−3 |
3238 reflections | Δρmin = −0.16 e Å−3 |
249 parameters | Extinction correction: SHELXL, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
0 restraints | Extinction coefficient: 0.044 (33) |
Primary atom site location: structure-invariant direct methods | Absolute structure: Flack H D (1983), Acta Cryst. A39, 876-881 |
Secondary atom site location: difference Fourier map | Absolute structure parameter: 1.63 (115) |
Crystal data top
C13H17NO4·H2O | V = 1408.31 (7) Å3 |
Mr = 269.29 | Z = 4 |
Orthorhombic, P212121 | Mo Kα radiation |
a = 7.3827 (2) Å | µ = 0.10 mm−1 |
b = 13.1421 (4) Å | T = 293 K |
c = 14.5150 (4) Å | 0.3 × 0.2 × 0.2 mm |
Data collection top
Siemens SMART-CCD diffractometer | 2660 reflections with I > 2σ(I) |
15638 measured reflections | Rint = 0.032 |
3241 independent reflections | |
Refinement top
R[F2 > 2σ(F2)] = 0.038 | All H-atom parameters refined |
wR(F2) = 0.100 | Δρmax = 0.17 e Å−3 |
S = 1.10 | Δρmin = −0.16 e Å−3 |
3238 reflections | Absolute structure: Flack H D (1983), Acta Cryst. A39, 876-881 |
249 parameters | Absolute structure parameter: 1.63 (115) |
0 restraints | |
Special details top
Experimental. Crystal to Detector distance was 4.51 cm, ω range is 0.3 ° and exposure time
was 10 s. |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell e.s.d.'s are taken
into account individually in the estimation of e.s.d.'s in distances, angles
and torsion angles; correlations between e.s.d.'s in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s.
planes. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
O1 | 0.2154 (3) | 0.20331 (10) | 0.42472 (10) | 0.0653 (5) | |
O | 0.5662 (2) | 0.03510 (13) | 0.38004 (10) | 0.0544 (4) | |
O2 | 0.1893 (2) | 0.12768 (9) | 0.56078 (9) | 0.0544 (4) | |
OH | −0.0282 (2) | −0.44010 (11) | 0.32293 (11) | 0.0588 (4) | |
HH | 0.022 (4) | −0.480 (2) | 0.3613 (18) | 0.067 (8)* | |
N | 0.2735 (2) | 0.01902 (12) | 0.33857 (10) | 0.0385 (3) | |
H | 0.193 (3) | 0.0227 (18) | 0.2935 (16) | 0.054 (6)* | |
CA | 0.2063 (2) | 0.01927 (13) | 0.43251 (11) | 0.0357 (4) | |
HA | 0.287 (3) | −0.0193 (14) | 0.4701 (12) | 0.031 (4)* | |
C | 0.4507 (3) | 0.03053 (15) | 0.31956 (13) | 0.0432 (4) | |
C2 | 0.2049 (3) | 0.12727 (13) | 0.47049 (12) | 0.0392 (4) | |
CG | 0.0064 (3) | −0.13737 (13) | 0.40918 (12) | 0.0384 (4) | |
CD1 | 0.0981 (3) | −0.21311 (15) | 0.45619 (14) | 0.0477 (5) | |
HD1 | 0.176 (4) | −0.1962 (19) | 0.5062 (17) | 0.062 (7)* | |
C3 | 0.1894 (5) | 0.2273 (2) | 0.6058 (2) | 0.0703 (8) | |
H31 | 0.100 (4) | 0.268 (2) | 0.5733 (19) | 0.072 (8)* | |
H32 | 0.311 (4) | 0.2426 (19) | 0.6403 (18) | 0.062 (7)* | |
CB | 0.0156 (3) | −0.02671 (14) | 0.43830 (14) | 0.0432 (4) | |
HB1 | −0.023 (3) | −0.0167 (17) | 0.5058 (15) | 0.053 (6)* | |
HB2 | −0.072 (3) | 0.0137 (17) | 0.4001 (14) | 0.049 (6)* | |
C1 | 0.4987 (4) | 0.0390 (3) | 0.2190 (2) | 0.0659 (7) | |
H11 | 0.588 (6) | −0.004 (3) | 0.207 (3) | 0.118 (13)* | |
H12 | 0.503 (6) | 0.108 (4) | 0.206 (3) | 0.138 (15)* | |
H13 | 0.397 (5) | 0.016 (3) | 0.177 (3) | 0.113 (12)* | |
CZ | −0.0153 (3) | −0.34118 (13) | 0.35436 (12) | 0.0417 (4) | |
CE2 | −0.1098 (3) | −0.2670 (2) | 0.3069 (2) | 0.0556 (6) | |
HE2 | −0.175 (3) | −0.2823 (18) | 0.2529 (17) | 0.062 (7)* | |
CE1 | 0.0886 (3) | −0.31474 (15) | 0.42960 (14) | 0.0463 (5) | |
HE1 | 0.152 (3) | −0.3627 (19) | 0.4637 (17) | 0.058 (6)* | |
CD2 | −0.0986 (3) | −0.1663 (2) | 0.3347 (2) | 0.0515 (5) | |
HD2 | −0.160 (3) | −0.1110 (19) | 0.3009 (15) | 0.056 (6)* | |
C4 | 0.1647 (9) | 0.2127 (3) | 0.7049 (2) | 0.127 (2) | |
H41 | 0.191 (5) | 0.285 (3) | 0.735 (3) | 0.119 (12)* | |
H42 | 0.207 (6) | 0.157 (3) | 0.732 (3) | 0.121 (13)* | |
H43 | 0.020 (18) | 0.207 (8) | 0.664 (7) | 0.38 (6)* | |
OW | 0.1445 (2) | 0.42672 (13) | 0.43466 (12) | 0.0586 (4) | |
HW1 | 0.114 (5) | 0.436 (3) | 0.499 (3) | 0.100 (11)* | |
HW2 | 0.151 (5) | 0.369 (3) | 0.427 (3) | 0.105 (12)* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
O1 | 0.1149 (14) | 0.0330 (7) | 0.0479 (8) | 0.0033 (8) | 0.0047 (9) | 0.0024 (6) |
O | 0.0426 (7) | 0.0668 (9) | 0.0538 (8) | −0.0027 (7) | −0.0049 (6) | −0.0095 (7) |
O2 | 0.0910 (11) | 0.0333 (7) | 0.0388 (7) | 0.0039 (7) | 0.0023 (7) | −0.0058 (6) |
OH | 0.0830 (12) | 0.0367 (7) | 0.0565 (9) | 0.0013 (7) | −0.0253 (8) | −0.0033 (6) |
N | 0.0396 (8) | 0.0411 (8) | 0.0348 (7) | 0.0005 (7) | −0.0014 (6) | −0.0050 (6) |
CA | 0.0387 (9) | 0.0331 (8) | 0.0353 (8) | 0.0029 (7) | −0.0021 (7) | −0.0037 (7) |
C | 0.0462 (11) | 0.0386 (9) | 0.0448 (10) | −0.0005 (8) | 0.0014 (8) | −0.0106 (8) |
C2 | 0.0453 (10) | 0.0335 (9) | 0.0388 (9) | 0.0031 (8) | −0.0009 (8) | −0.0019 (7) |
CG | 0.0370 (9) | 0.0364 (8) | 0.0419 (9) | −0.0024 (7) | 0.0029 (7) | −0.0015 (7) |
CD1 | 0.0547 (12) | 0.0438 (11) | 0.0445 (10) | −0.0049 (9) | −0.0138 (9) | −0.0012 (8) |
C3 | 0.120 (2) | 0.0390 (11) | 0.0517 (13) | 0.0136 (14) | −0.0104 (15) | −0.0148 (9) |
CB | 0.0409 (10) | 0.0385 (9) | 0.0503 (10) | 0.0018 (8) | 0.0029 (9) | −0.0067 (9) |
C1 | 0.067 (2) | 0.084 (2) | 0.0470 (12) | −0.013 (2) | 0.0126 (12) | −0.0142 (12) |
CZ | 0.0477 (10) | 0.0348 (9) | 0.0425 (9) | −0.0023 (8) | −0.0070 (8) | −0.0017 (7) |
CE2 | 0.0703 (14) | 0.0426 (11) | 0.0537 (12) | −0.0010 (10) | −0.0273 (11) | −0.0023 (9) |
CE1 | 0.0514 (11) | 0.0388 (9) | 0.0486 (11) | 0.0002 (8) | −0.0135 (9) | 0.0037 (9) |
CD2 | 0.0608 (13) | 0.0376 (10) | 0.0560 (12) | 0.0039 (9) | −0.0190 (10) | 0.0024 (9) |
C4 | 0.261 (6) | 0.061 (2) | 0.058 (2) | 0.038 (3) | −0.036 (3) | −0.0150 (14) |
OW | 0.0825 (12) | 0.0421 (8) | 0.0512 (9) | 0.0050 (8) | −0.0045 (8) | 0.0037 (7) |
Geometric parameters (Å, º) top
O1—C2 | 1.203 (2) | C—C1 | 1.507 (3) |
O—C | 1.225 (2) | CG—CD1 | 1.384 (3) |
O2—C2 | 1.316 (2) | CG—CD2 | 1.384 (3) |
O2—C3 | 1.463 (2) | CG—CB | 1.516 (2) |
OH—CZ | 1.381 (2) | CD1—CE1 | 1.392 (3) |
N—C | 1.345 (3) | C3—C4 | 1.462 (4) |
N—CA | 1.451 (2) | CZ—CE1 | 1.379 (3) |
CA—C2 | 1.523 (2) | CZ—CE2 | 1.383 (3) |
CA—CB | 1.535 (3) | CE2—CD2 | 1.385 (3) |
| | | |
C2—O2—C3 | 116.7 (2) | CD1—CG—CB | 122.1 (2) |
C—N—CA | 121.7 (2) | CD2—CG—CB | 120.4 (2) |
N—CA—C2 | 110.17 (14) | CG—CD1—CE1 | 121.9 (2) |
N—CA—CB | 111.37 (14) | O2—C3—C4 | 108.8 (2) |
C2—CA—CB | 109.91 (14) | CG—CB—CA | 113.78 (15) |
O—C—N | 122.4 (2) | CE1—CZ—OH | 122.5 (2) |
O—C—C1 | 121.8 (2) | CE1—CZ—CE2 | 119.8 (2) |
N—C—C1 | 115.8 (2) | OH—CZ—CE2 | 117.7 (2) |
O1—C2—O2 | 123.5 (2) | CZ—CE2—CD2 | 119.9 (2) |
O1—C2—CA | 125.04 (15) | CZ—CE1—CD1 | 119.3 (2) |
O2—C2—CA | 111.42 (14) | CG—CD2—CE2 | 121.5 (2) |
CD1—CG—CD2 | 117.5 (2) | | |
Experimental details
| (110) | (293) |
Crystal data |
Chemical formula | C13H17NO4·H2O | C13H17NO4·H2O |
Mr | 269.29 | 269.29 |
Crystal system, space group | Orthorhombic, P212121 | Orthorhombic, P212121 |
Temperature (K) | 110 | 293 |
a, b, c (Å) | 7.235 (2), 13.056 (4), 14.415 (4) | 7.3827 (2), 13.1421 (4), 14.5150 (4) |
V (Å3) | 1361.6 (12) | 1408.31 (7) |
Z | 4 | 4 |
Radiation type | Mo Kα | Mo Kα |
µ (mm−1) | 0.10 | 0.10 |
Crystal size (mm) | 0.3 × 0.2 × 0.2 | 0.3 × 0.2 × 0.2 |
|
Data collection |
Diffractometer | Siemens SMART-CCD diffractometer | Siemens SMART-CCD diffractometer |
Absorption correction | – | – |
No. of measured, independent and observed [I > 2σ(I)] reflections | 98393, 14787, 10189 | 15638, 3241, 2660 |
Rint | 0.027 | 0.032 |
(sin θ/λ)max (Å−1) | 1.095 | 0.649 |
|
Refinement |
R[F2 > 2σ(F2)], wR(F2), S | 0.027, 0.0202, ? | 0.038, 0.100, 1.10 |
No. of reflections | 10189 | 3238 |
No. of parameters | 544 | 249 |
H-atom treatment | All H-atom parameters refined | All H-atom parameters refined |
Δρmax, Δρmin (e Å−3) | 0.14, −0.17 | 0.17, −0.16 |
Absolute structure | Flack H D (1983), Acta Cryst. A39, 876-881 | Flack H D (1983), Acta Cryst. A39, 876-881 |
Absolute structure parameter | 1.63 (115) | 1.63 (115) |
Selected geometric parameters (Å, º) for (110) topO1—C2 | 1.2160 (6) | C—C1 | 1.5086 (6) |
O—C | 1.2390 (7) | CG—CD1 | 1.4001 (6) |
O2—C2 | 1.3237 (7) | CG—CD2 | 1.3968 (6) |
O2—C3 | 1.4545 (7) | CG—CB | 1.5144 (5) |
OH—CZ | 1.3697 (6) | CD1—CE1 | 1.3960 (6) |
N—C | 1.3475 (7) | C3—C4 | 1.5008 (7) |
N—CA | 1.4444 (6) | CZ—CE1 | 1.3965 (6) |
CA—C2 | 1.5307 (5) | CZ—CE2 | 1.3984 (6) |
CA—CB | 1.5422 (6) | CE2—CD2 | 1.3948 (6) |
| | | |
C2—O2—C3 | 116.23 (5) | CD1—CG—CB | 121.60 (3) |
C—N—CA | 121.36 (4) | CD2—CG—CB | 120.49 (3) |
N—CA—C2 | 110.35 (3) | CG—CD1—CE1 | 121.40 (4) |
N—CA—CB | 110.85 (3) | O2—C3—C4 | 108.05 (4) |
C2—CA—CB | 109.77 (3) | CG—CB—CA | 113.10 (3) |
O—C—N | 122.42 (5) | CE1—CZ—OH | 122.57 (4) |
O—C—C1 | 121.71 (5) | CE1—CZ—CE2 | 119.71 (4) |
N—C—C1 | 115.87 (4) | OH—CZ—CE2 | 117.71 (4) |
O1—C2—O2 | 124.27 (5) | CZ—CE2—CD2 | 119.70 (4) |
O1—C2—CA | 124.37 (4) | CZ—CE1—CD1 | 119.74 (3) |
O2—C2—CA | 111.36 (4) | CG—CD2—CE2 | 121.53 (4) |
CD1—CG—CD2 | 117.91 (3) | | |
| | | |
O2—C2—CA—N | −167.3 (3) | CD1—CG—CB—CA | 64.53 (5) |
O1—C2—CA—N | 13.34 (6) | CD2—CG—CB—CA | −116.17 (4) |
CG—CB—CA—N | 63.05 (4) | C—N—CA—C2 | 74.16 (4) |
Hydrogen-bond geometry (Å, º) for (110) top
D—H···A | D—H | H···A | D···A | D—H···A |
OW—HW2···O1 | .9647 (5) | 2.0097 (5) | 2.9420 (7) | 161.93 (3) |
OW—HW1···Oi | .9652 (6) | 1.8280 (6) | 2.7863 (8) | 171.51 (3) |
OH—HH···OWii | .9675 (6) | 1.7312 (4) | 2.6912 (7) | 171.10 (3) |
N—H···OHiii | 1.0321 (5) | 1.9454 (5) | 2.9640 (7) | 168.51 (2) |
Symmetry codes: (i) x−1/2, −y+1/2, −z+1; (ii) x, y−1, z; (iii) −x, y+1/2, −z+1/2. |
Selected geometric parameters (Å, º) for (293) topO1—C2 | 1.203 (2) | C—C1 | 1.507 (3) |
O—C | 1.225 (2) | CG—CD1 | 1.384 (3) |
O2—C2 | 1.316 (2) | CG—CD2 | 1.384 (3) |
O2—C3 | 1.463 (2) | CG—CB | 1.516 (2) |
OH—CZ | 1.381 (2) | CD1—CE1 | 1.392 (3) |
N—C | 1.345 (3) | C3—C4 | 1.462 (4) |
N—CA | 1.451 (2) | CZ—CE1 | 1.379 (3) |
CA—C2 | 1.523 (2) | CZ—CE2 | 1.383 (3) |
CA—CB | 1.535 (3) | CE2—CD2 | 1.385 (3) |
| | | |
C2—O2—C3 | 116.7 (2) | CD1—CG—CB | 122.1 (2) |
C—N—CA | 121.7 (2) | CD2—CG—CB | 120.4 (2) |
N—CA—C2 | 110.17 (14) | CG—CD1—CE1 | 121.9 (2) |
N—CA—CB | 111.37 (14) | O2—C3—C4 | 108.8 (2) |
C2—CA—CB | 109.91 (14) | CG—CB—CA | 113.78 (15) |
O—C—N | 122.4 (2) | CE1—CZ—OH | 122.5 (2) |
O—C—C1 | 121.8 (2) | CE1—CZ—CE2 | 119.8 (2) |
N—C—C1 | 115.8 (2) | OH—CZ—CE2 | 117.7 (2) |
O1—C2—O2 | 123.5 (2) | CZ—CE2—CD2 | 119.9 (2) |
O1—C2—CA | 125.04 (15) | CZ—CE1—CD1 | 119.3 (2) |
O2—C2—CA | 111.42 (14) | CG—CD2—CE2 | 121.5 (2) |
CD1—CG—CD2 | 117.5 (2) | | |
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