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The title compound, C
6H
12N
2S
2, possesses a centre of symmetry with one-half of the molecule in the asymmetric unit. The crystal structure has intermolecular N—H
N and C—H
S contacts and intramolecular S
N interactions.
Supporting information
CCDC reference: 298362
Key indicators
- Single-crystal X-ray study
- T = 293 K
- Mean (C-C) = 0.004 Å
- R factor = 0.036
- wR factor = 0.091
- Data-to-parameter ratio = 12.5
checkCIF/PLATON results
No syntax errors found
Alert level C
PLAT022_ALERT_3_C Ratio Unique / Expected Reflections too Low .... 0.93
PLAT029_ALERT_3_C _diffrn_measured_fraction_theta_full Low ....... 0.97
PLAT094_ALERT_2_C Ratio of Maximum / Minimum Residual Density .... 2.14
PLAT199_ALERT_1_C Check the Reported _cell_measurement_temperature 293 K
Alert level G
REFLT03_ALERT_1_G ALERT: Expected hkl max differ from CIF values
From the CIF: _diffrn_reflns_theta_max 27.45
From the CIF: _reflns_number_total 878
From the CIF: _diffrn_reflns_limit_ max hkl 10. 4. 12.
From the CIF: _diffrn_reflns_limit_ min hkl -10. -6. -12.
TEST1: Expected hkl limits for theta max
Calculated maximum hkl 12. 6. 12.
Calculated minimum hkl -12. -6. -12.
0 ALERT level A = In general: serious problem
0 ALERT level B = Potentially serious problem
4 ALERT level C = Check and explain
1 ALERT level G = General alerts; check
2 ALERT type 1 CIF construction/syntax error, inconsistent or missing data
1 ALERT type 2 Indicator that the structure model may be wrong or deficient
2 ALERT type 3 Indicator that the structure quality may be low
0 ALERT type 4 Improvement, methodology, query or suggestion
checkCIF publication errors
Alert level A
PUBL024_ALERT_1_A The number of authors is greater than 5.
Please specify the role of each of the co-authors
for your paper.
| Author Response: Professors Yliana Yliana L\'opez and M. Eugenia Ochoa are the ones
in charge of the synthesis and characterization of the compound.
Professors Rosa Santillan and Norberto Farf\'an are the ones in charge
of the research project.
Professors Itzia I. Padilla-Mart\'inez and Efr\'en V. Garc\'ia-B\'aez
are the ones in charge of the analysis of the crystal.
|
1 ALERT level A = Data missing that is essential or data in wrong format
0 ALERT level G = General alerts. Data that may be required is missing
Data collection: COLLECT (Nonius, 2000); cell refinement: SCALEPACK (Otwinowski & Minor, 1997); data reduction: SCALEPACK and DENZO (Otwinowski & Minor, 1997); program(s) used to solve structure: SHELXS97(Sheldrick 1990); program(s) used to refine structure: SHELXL97 (Sheldrick 1997); molecular graphics: PLATON (Spek, 2003); software used to prepare material for publication: WinGX (Farrugia, 1999).
2,2'-Bi-1,3-thiazolidine
top
Crystal data top
C6H12N2S2 | F(000) = 188 |
Mr = 176.30 | Dx = 1.415 Mg m−3 |
Monoclinic, P21/n | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2yn | Cell parameters from 600 reflections |
a = 9.4931 (6) Å | θ = 20–25° |
b = 5.0070 (4) Å | µ = 0.57 mm−1 |
c = 9.5942 (8) Å | T = 293 K |
β = 114.844 (3)° | Block, colorless |
V = 413.83 (6) Å3 | 0.15 × 0.10 × 0.08 mm |
Z = 2 | |
Data collection top
Nonius KappaCCD diffractometer | 785 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.019 |
Graphite monochromator | θmax = 27.5°, θmin = 4.7° |
Detector resolution: 9 pixels mm-1 | h = −10→10 |
φ and ω scans | k = −6→4 |
1332 measured reflections | l = −12→12 |
878 independent reflections | |
Refinement top
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.036 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.091 | All H-atom parameters refined |
S = 1.07 | w = 1/[σ2(Fo2) + (0.0315P)2 + 0.2832P] where P = (Fo2 + 2Fc2)/3 |
878 reflections | (Δ/σ)max < 0.001 |
70 parameters | Δρmax = 0.62 e Å−3 |
0 restraints | Δρmin = −0.29 e Å−3 |
Special details top
Geometry. Bond distances, angles etc. have been calculated using the rounded
fractional coordinates. All su's are estimated from the variances of the
(full) variance-covariance matrix. The cell e.s.d.'s are taken into account in
the estimation of distances, angles and torsion angles |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor
wR and goodness of fit S are based on F2, conventional
R-factors R are based on F, with F set to zero for
negative F2. The threshold expression of F2 >
σ(F2) is used only for calculating R-factors(gt) etc.
and is not relevant to the choice of reflections for refinement.
R-factors based on F2 are statistically about twice as large
as those based on F, and R- factors based on ALL data will be
even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
S1 | −0.14926 (5) | 0.70330 (12) | 0.09502 (5) | 0.0396 (2) | |
N3 | 0.13613 (18) | 0.4867 (4) | 0.20915 (17) | 0.0341 (5) | |
C2 | 0.0254 (2) | 0.6007 (4) | 0.0652 (2) | 0.0321 (5) | |
C4 | 0.0551 (3) | 0.3845 (5) | 0.2986 (2) | 0.0393 (6) | |
C5 | −0.0647 (3) | 0.5918 (5) | 0.2931 (2) | 0.0416 (7) | |
H2 | 0.074 (3) | 0.767 (5) | 0.032 (3) | 0.040 (6)* | |
H3 | 0.200 (3) | 0.616 (6) | 0.263 (3) | 0.052 (7)* | |
H4A | 0.003 (3) | 0.219 (6) | 0.248 (3) | 0.052 (7)* | |
H4B | 0.127 (3) | 0.348 (5) | 0.399 (3) | 0.044 (7)* | |
H5A | −0.014 (4) | 0.748 (6) | 0.360 (4) | 0.063 (8)* | |
H5B | −0.143 (3) | 0.520 (6) | 0.319 (3) | 0.059 (8)* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
S1 | 0.0326 (3) | 0.0513 (4) | 0.0326 (3) | 0.0101 (2) | 0.0116 (2) | −0.0016 (2) |
N3 | 0.0297 (8) | 0.0434 (10) | 0.0240 (8) | 0.0024 (7) | 0.0061 (6) | −0.0001 (7) |
C2 | 0.0294 (9) | 0.0355 (10) | 0.0282 (9) | 0.0017 (8) | 0.0089 (7) | 0.0002 (8) |
C4 | 0.0413 (11) | 0.0402 (12) | 0.0309 (10) | −0.0050 (9) | 0.0099 (8) | 0.0034 (9) |
C5 | 0.0400 (11) | 0.0539 (14) | 0.0338 (10) | −0.0036 (10) | 0.0185 (8) | 0.0001 (9) |
Geometric parameters (Å, º) top
S1—C2 | 1.869 (2) | C4—C5 | 1.524 (4) |
S1—C5 | 1.8127 (19) | C2—H2 | 1.06 (3) |
N3—C2 | 1.455 (2) | C4—H4A | 0.98 (3) |
N3—C4 | 1.465 (3) | C4—H4B | 0.94 (3) |
N3—H3 | 0.89 (3) | C5—H5A | 1.00 (3) |
C2—C2i | 1.519 (3) | C5—H5B | 0.95 (3) |
| | | |
S1···C4ii | 3.677 (2) | C4···H3vi | 2.95 (3) |
S1···N3i | 3.1213 (17) | C4···H2i | 2.98 (3) |
S1···H4Aiii | 3.02 (3) | H2···S1iv | 3.12 (3) |
S1···H2iv | 3.12 (3) | H2···C4i | 2.98 (3) |
S1···H5Bv | 2.91 (3) | H2···H4Ai | 2.47 (4) |
S1···H3ii | 3.03 (3) | H3···N3vii | 2.36 (3) |
S1···H4Bii | 3.12 (3) | H3···C4vii | 2.95 (3) |
N3···N3vi | 3.183 (3) | H3···S1viii | 3.03 (3) |
N3···N3vii | 3.183 (3) | H4A···S1ix | 3.02 (3) |
N3···S1i | 3.1213 (17) | H4A···C2i | 3.04 (3) |
N3···H3vi | 2.36 (3) | H4A···H2i | 2.47 (4) |
C4···S1viii | 3.677 (2) | H4B···S1viii | 3.12 (3) |
C2···H4Ai | 3.04 (3) | H5B···S1x | 2.91 (3) |
| | | |
C2—S1—C5 | 92.59 (11) | C2i—C2—H2 | 107.5 (14) |
C2—N3—C4 | 110.20 (17) | N3—C4—H4A | 106.5 (17) |
C4—N3—H3 | 108.2 (18) | N3—C4—H4B | 109.6 (19) |
C2—N3—H3 | 108.1 (18) | C5—C4—H4A | 110.1 (18) |
S1—C2—C2i | 108.27 (14) | C5—C4—H4B | 112.3 (17) |
S1—C2—N3 | 107.22 (13) | H4A—C4—H4B | 110 (2) |
N3—C2—C2i | 111.96 (17) | S1—C5—H5A | 108.3 (19) |
N3—C4—C5 | 108.04 (19) | S1—C5—H5B | 109.9 (16) |
S1—C5—C4 | 103.97 (14) | C4—C5—H5A | 111 (2) |
S1—C2—H2 | 110.8 (15) | C4—C5—H5B | 112.9 (19) |
N3—C2—H2 | 111.1 (15) | H5A—C5—H5B | 110 (3) |
| | | |
C5—S1—C2—N3 | 0.29 (16) | S1—C2—C2i—S1i | −180.00 (9) |
C5—S1—C2—C2i | 121.26 (14) | S1—C2—C2i—N3i | 62.02 (18) |
C2—S1—C5—C4 | −23.39 (18) | N3—C2—C2i—S1i | −62.02 (18) |
C4—N3—C2—S1 | 24.8 (2) | N3—C2—C2i—N3i | 180.00 (16) |
C4—N3—C2—C2i | −93.8 (2) | N3—C4—C5—S1 | 41.9 (2) |
C2—N3—C4—C5 | −44.4 (2) | | |
Symmetry codes: (i) −x, −y+1, −z; (ii) x−1/2, −y+3/2, z−1/2; (iii) x, y+1, z; (iv) −x, −y+2, −z; (v) −x−1/2, y+1/2, −z+1/2; (vi) −x+1/2, y−1/2, −z+1/2; (vii) −x+1/2, y+1/2, −z+1/2; (viii) x+1/2, −y+3/2, z+1/2; (ix) x, y−1, z; (x) −x−1/2, y−1/2, −z+1/2. |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
N3—H3···N3vii | 0.89 (3) | 2.36 (3) | 3.183 (3) | 153 (2) |
C5—H5B···Sv | 0.95 (3) | 2.91 (3) | 3.842 (3) | 160.8 (6) |
Symmetry codes: (v) −x−1/2, y+1/2, −z+1/2; (vii) −x+1/2, y+1/2, −z+1/2. |
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