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4,6-Dimethoxy-3-methyldihydrotriazine-2-one (1) undergoes a single-crystal to single-crystal reversible phase transformation at 319 K. The low-temperature phase crystallizes in monoclinic space group P21/n with two crystallographically independent molecules in the asymmetric unit. The high-temperature phase is obtained by heating a single crystal of the low-temperature phase. This phase is orthorhombic, space group Pnma, with the molecules occupying a crystallographic mirror plane. The enthalpy of the transformation is 1.34 kJ mol-1. The small energy difference between the two phases and the minimal atomic movement facilitate the single-crystal to single-crystal reversible phase transformation with no destruction of the crystal lattice. On further heating, the high-temperature phase undergoes methyl rearrangement in the solid state. 2,4,6-Trimethoxy-1,3,5-triazine (3), on the other hand, undergoes an irreversible phase transformation from single-crystal to polycrystalline material at 340 K with an enthalpy of 3.9 kJ mol-1; upon further heating it melts and methyl rearrangement takes place.
Supporting information
CCDC references: 179359; 179360; 179361
Data collection: KappaCCD (Nonius,2000) for LTP, HTP; SMART V.4.209 (Siemens, 1995) for HTP(359K). Cell refinement: DENZO SMN (Otwinowski & Minor,1997) for LTP, HTP; SAINT V.4.209 (Siemens, 1995) for HTP(359K). Data reduction: DENZO SMN (Otwinowski & Minor,1997) for LTP, HTP; SAINT V.4.209 (Siemens, 1995) for HTP(359K). Program(s) used to solve structure: SHELXS97 (Sheldrick, 1990) for LTP, HTP; SHELXS97 (Sheldrick, 1997) for HTP(359K). For all compounds, program(s) used to refine structure: SHELXL97 (Sheldrick, 1997). Molecular graphics: ORTEP-3 for Windows (Farrugia, 1997) for LTP, HTP; ORTEP-3 (Farrugia, 1997) for HTP(359K).
(LTP) 4,6-Dimethoxy-3-methyl-dihydro-triazine-2-one
top
Crystal data top
C6H9N3O3 | F(000) = 720 |
Mr = 171.16 | Dx = 1.412 Mg m−3 |
Monoclinic, P21/n | Mo Kα radiation, λ = 0.71070 Å |
a = 13.480 (2) Å | Cell parameters from 3758 reflections |
b = 14.172 (2) Å | θ = 1.0–28.2° |
c = 8.433 (1) Å | µ = 0.12 mm−1 |
β = 92.07 (2)° | T = 298 K |
V = 1610.0 (2) Å3 | Prism, colorless |
Z = 8 | 0.35 × 0.3 × 0.3 mm |
Data collection top
Nonius KappaCCD diffractometer | 2273 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.046 |
Graphite monochromator | θmax = 28.3°, θmin = 2.1° |
phi–scan | h = −17→17 |
3758 measured reflections | k = −18→0 |
3758 independent reflections | l = 0→10 |
Refinement top
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.056 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.180 | w = 1/[σ2(Fo2) + (0.0773P)2 + 0.7666P] where P = (Fo2 + 2Fc2)/3 |
S = 1.04 | (Δ/σ)max = 0.158 |
3758 reflections | Δρmax = 0.22 e Å−3 |
224 parameters | Δρmin = −0.18 e Å−3 |
0 restraints | Extinction correction: SHELXL, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.046 (7) |
Crystal data top
C6H9N3O3 | V = 1610.0 (2) Å3 |
Mr = 171.16 | Z = 8 |
Monoclinic, P21/n | Mo Kα radiation |
a = 13.480 (2) Å | µ = 0.12 mm−1 |
b = 14.172 (2) Å | T = 298 K |
c = 8.433 (1) Å | 0.35 × 0.3 × 0.3 mm |
β = 92.07 (2)° | |
Data collection top
Nonius KappaCCD diffractometer | 2273 reflections with I > 2σ(I) |
3758 measured reflections | Rint = 0.046 |
3758 independent reflections | |
Refinement top
R[F2 > 2σ(F2)] = 0.056 | 0 restraints |
wR(F2) = 0.180 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.04 | (Δ/σ)max = 0.158 |
3758 reflections | Δρmax = 0.22 e Å−3 |
224 parameters | Δρmin = −0.18 e Å−3 |
Special details top
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell e.s.d.'s are taken
into account individually in the estimation of e.s.d.'s in distances, angles
and torsion angles; correlations between e.s.d.'s in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s.
planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor
wR and goodness of fit S are based on F2, conventional
R-factors R are based on F, with F set to zero for
negative F2. The threshold expression of F2 >
σ(F2) is used only for calculating R-factors(gt) etc.
and is not relevant to the choice of reflections for refinement.
R-factors based on F2 are statistically about twice as large
as those based on F, and R- factors based on ALL data will be
even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
O11 | 0.11930 (16) | −0.09655 (14) | 0.7723 (2) | 0.0723 (6) | |
O12 | 0.12214 (13) | −0.03273 (13) | 0.24944 (19) | 0.0576 (5) | |
O13 | 0.15749 (13) | 0.20508 (12) | 0.6010 (2) | 0.0542 (5) | |
N11 | 0.13655 (14) | 0.05751 (13) | 0.7000 (2) | 0.0441 (5) | |
N12 | 0.11726 (13) | −0.06465 (13) | 0.5092 (2) | 0.0420 (5) | |
N13 | 0.14134 (14) | 0.09077 (14) | 0.4230 (2) | 0.0439 (5) | |
C11 | 0.12442 (17) | −0.03665 (17) | 0.6687 (3) | 0.0446 (5) | |
C12 | 0.12741 (14) | 0.00114 (17) | 0.3955 (2) | 0.0407 (5) | |
C13 | 0.14419 (15) | 0.11299 (16) | 0.5788 (3) | 0.0389 (5) | |
C14 | 0.1049 (2) | −0.16529 (17) | 0.4719 (4) | 0.0593 (7) | |
H14A | 0.0650 | −0.1720 | 0.3759 | 0.089* | |
H14B | 0.0727 | −0.1962 | 0.5573 | 0.089* | |
H14C | 0.1688 | −0.1934 | 0.4581 | 0.089* | |
C15 | 0.1289 (2) | 0.0353 (2) | 0.1206 (3) | 0.0720 (9) | |
H15A | 0.0754 | 0.0797 | 0.1255 | 0.108* | |
H15B | 0.1248 | 0.0027 | 0.0207 | 0.108* | |
H15C | 0.1911 | 0.0681 | 0.1306 | 0.108* | |
C16 | 0.1601 (2) | 0.2405 (2) | 0.7618 (3) | 0.0701 (8) | |
H16A | 0.0962 | 0.2321 | 0.8064 | 0.105* | |
H16B | 0.1767 | 0.3063 | 0.7615 | 0.105* | |
H16C | 0.2092 | 0.2065 | 0.8242 | 0.105* | |
O21 | 0.09978 (19) | 0.65764 (14) | 1.2798 (2) | 0.0806 (7) | |
O22 | 0.11168 (12) | 0.59344 (13) | 0.75859 (18) | 0.0521 (5) | |
O23 | 0.14528 (13) | 0.35632 (11) | 1.1130 (2) | 0.0534 (5) | |
N21 | 0.12268 (14) | 0.50404 (13) | 1.2092 (2) | 0.0440 (5) | |
N22 | 0.10644 (13) | 0.62603 (13) | 1.0175 (2) | 0.0406 (5) | |
N23 | 0.12913 (13) | 0.46987 (13) | 0.9328 (2) | 0.0407 (5) | |
C21 | 0.10944 (18) | 0.59785 (17) | 1.1775 (3) | 0.0459 (6) | |
C22 | 0.11627 (14) | 0.55969 (16) | 0.9045 (2) | 0.0375 (5) | |
C23 | 0.13180 (15) | 0.44823 (15) | 1.0888 (3) | 0.0376 (5) | |
C24 | 0.0944 (2) | 0.72659 (17) | 0.9794 (3) | 0.0563 (7) | |
H24A | 0.1569 | 0.7521 | 0.9490 | 0.084* | |
H24B | 0.0721 | 0.7597 | 1.0708 | 0.084* | |
H24C | 0.0464 | 0.7337 | 0.8934 | 0.084* | |
C25 | 0.1210 (2) | 0.5256 (2) | 0.6301 (3) | 0.0648 (8) | |
H25A | 0.1838 | 0.4940 | 0.6414 | 0.097* | |
H25B | 0.1168 | 0.5580 | 0.5301 | 0.097* | |
H25C | 0.0684 | 0.4800 | 0.6343 | 0.097* | |
C26 | 0.1506 (2) | 0.3232 (2) | 1.2754 (3) | 0.0665 (8) | |
H26A | 0.2017 | 0.3569 | 1.3338 | 0.100* | |
H26B | 0.1655 | 0.2569 | 1.2770 | 0.100* | |
H26C | 0.0880 | 0.3337 | 1.3232 | 0.100* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
O11 | 0.1178 (17) | 0.0489 (12) | 0.0504 (12) | −0.0053 (11) | 0.0054 (10) | 0.0144 (10) |
O12 | 0.0698 (11) | 0.0662 (13) | 0.0369 (9) | −0.0008 (9) | 0.0015 (7) | −0.0144 (8) |
O13 | 0.0736 (11) | 0.0344 (10) | 0.0546 (11) | −0.0034 (8) | 0.0033 (8) | −0.0070 (8) |
N11 | 0.0577 (11) | 0.0414 (11) | 0.0333 (10) | 0.0003 (9) | 0.0028 (8) | −0.0024 (8) |
N12 | 0.0475 (10) | 0.0352 (11) | 0.0432 (11) | −0.0018 (8) | 0.0012 (8) | −0.0065 (8) |
N13 | 0.0552 (11) | 0.0402 (12) | 0.0363 (10) | 0.0005 (8) | 0.0023 (8) | −0.0008 (8) |
C11 | 0.0544 (13) | 0.0402 (14) | 0.0392 (13) | −0.0002 (10) | 0.0022 (9) | 0.0034 (10) |
C12 | 0.0392 (11) | 0.0480 (14) | 0.0347 (12) | 0.0018 (9) | 0.0004 (8) | −0.0068 (10) |
C13 | 0.0413 (11) | 0.0354 (13) | 0.0398 (12) | 0.0014 (9) | 0.0019 (8) | −0.0029 (10) |
C14 | 0.0654 (16) | 0.0384 (15) | 0.0739 (19) | −0.0042 (11) | 0.0021 (13) | −0.0123 (13) |
C15 | 0.090 (2) | 0.093 (2) | 0.0334 (14) | 0.0019 (17) | 0.0034 (12) | −0.0005 (14) |
C16 | 0.091 (2) | 0.0542 (18) | 0.0657 (19) | −0.0028 (14) | 0.0043 (14) | −0.0282 (15) |
O21 | 0.150 (2) | 0.0465 (11) | 0.0453 (11) | 0.0054 (12) | 0.0063 (11) | −0.0125 (9) |
O22 | 0.0644 (10) | 0.0589 (11) | 0.0328 (9) | −0.0021 (8) | 0.0005 (7) | 0.0116 (8) |
O23 | 0.0754 (11) | 0.0334 (10) | 0.0512 (10) | 0.0030 (8) | 0.0006 (8) | 0.0064 (8) |
N21 | 0.0606 (12) | 0.0376 (11) | 0.0337 (10) | −0.0008 (9) | 0.0011 (8) | 0.0032 (8) |
N22 | 0.0510 (10) | 0.0324 (10) | 0.0385 (10) | −0.0021 (8) | 0.0020 (7) | 0.0046 (8) |
N23 | 0.0517 (11) | 0.0378 (11) | 0.0326 (10) | 0.0000 (8) | 0.0002 (7) | −0.0009 (8) |
C21 | 0.0670 (15) | 0.0376 (13) | 0.0332 (12) | −0.0020 (11) | 0.0017 (10) | 0.0008 (10) |
C22 | 0.0380 (11) | 0.0441 (13) | 0.0302 (11) | −0.0040 (9) | 0.0007 (8) | 0.0065 (9) |
C23 | 0.0404 (11) | 0.0347 (12) | 0.0377 (12) | −0.0008 (8) | 0.0002 (8) | 0.0036 (9) |
C24 | 0.0737 (16) | 0.0330 (13) | 0.0624 (17) | 0.0023 (11) | 0.0042 (12) | 0.0101 (12) |
C25 | 0.0781 (18) | 0.088 (2) | 0.0285 (13) | −0.0035 (15) | −0.0003 (11) | 0.0008 (13) |
C26 | 0.092 (2) | 0.0480 (16) | 0.0585 (17) | 0.0026 (14) | −0.0034 (14) | 0.0225 (13) |
Geometric parameters (Å, º) top
O11—C11 | 1.221 (3) | O21—C21 | 1.220 (3) |
O12—C12 | 1.321 (3) | O22—C22 | 1.319 (2) |
O12—C15 | 1.458 (3) | O22—C25 | 1.457 (3) |
O13—C13 | 1.330 (3) | O23—C23 | 1.330 (3) |
O13—C16 | 1.445 (3) | O23—C26 | 1.447 (3) |
N11—C13 | 1.297 (3) | N21—C23 | 1.297 (3) |
N11—C11 | 1.369 (3) | N21—C21 | 1.367 (3) |
N12—C12 | 1.348 (3) | N22—C22 | 1.349 (3) |
N12—C11 | 1.402 (3) | N22—C21 | 1.406 (3) |
N12—C14 | 1.469 (3) | N22—C24 | 1.469 (3) |
N13—C12 | 1.304 (3) | N23—C22 | 1.306 (3) |
N13—C13 | 1.350 (3) | N23—C23 | 1.350 (3) |
C14—H14A | 0.9600 | C24—H24A | 0.9600 |
C14—H14B | 0.9600 | C24—H24B | 0.9600 |
C14—H14C | 0.9600 | C24—H24C | 0.9600 |
C15—H15A | 0.9600 | C25—H25A | 0.9600 |
C15—H15B | 0.9600 | C25—H25B | 0.9600 |
C15—H15C | 0.9600 | C25—H25C | 0.9600 |
C16—H16A | 0.9600 | C26—H26A | 0.9600 |
C16—H16B | 0.9600 | C26—H26B | 0.9600 |
C16—H16C | 0.9600 | C26—H26C | 0.9600 |
| | | |
C12—O12—C15 | 116.9 (2) | C22—O22—C25 | 116.8 (2) |
C13—O13—C16 | 118.1 (2) | C23—O23—C26 | 117.7 (2) |
C13—N11—C11 | 116.83 (19) | C23—N21—C21 | 117.08 (19) |
C12—N12—C11 | 118.79 (19) | C22—N22—C21 | 118.69 (19) |
C12—N12—C14 | 122.2 (2) | C22—N22—C24 | 122.30 (19) |
C11—N12—C14 | 118.9 (2) | C21—N22—C24 | 119.0 (2) |
C12—N13—C13 | 113.55 (19) | C22—N23—C23 | 113.50 (18) |
O11—C11—N11 | 123.3 (2) | O21—C21—N21 | 123.6 (2) |
O11—C11—N12 | 119.0 (2) | O21—C21—N22 | 118.8 (2) |
N11—C11—N12 | 117.7 (2) | N21—C21—N22 | 117.6 (2) |
N13—C12—O12 | 121.5 (2) | N23—C22—O22 | 121.7 (2) |
N13—C12—N12 | 124.4 (2) | N23—C22—N22 | 124.45 (19) |
O12—C12—N12 | 114.1 (2) | O22—C22—N22 | 113.8 (2) |
N11—C13—O13 | 119.9 (2) | N21—C23—O23 | 119.6 (2) |
N11—C13—N13 | 128.7 (2) | N21—C23—N23 | 128.7 (2) |
O13—C13—N13 | 111.4 (2) | O23—C23—N23 | 111.76 (19) |
N12—C14—H14A | 109.5 | N22—C24—H24A | 109.5 |
N12—C14—H14B | 109.5 | N22—C24—H24B | 109.5 |
H14A—C14—H14B | 109.5 | H24A—C24—H24B | 109.5 |
N12—C14—H14C | 109.5 | N22—C24—H24C | 109.5 |
H14A—C14—H14C | 109.5 | H24A—C24—H24C | 109.5 |
H14B—C14—H14C | 109.5 | H24B—C24—H24C | 109.5 |
O12—C15—H15A | 109.5 | O22—C25—H25A | 109.5 |
O12—C15—H15B | 109.5 | O22—C25—H25B | 109.5 |
H15A—C15—H15B | 109.5 | H25A—C25—H25B | 109.5 |
O12—C15—H15C | 109.5 | O22—C25—H25C | 109.5 |
H15A—C15—H15C | 109.5 | H25A—C25—H25C | 109.5 |
H15B—C15—H15C | 109.5 | H25B—C25—H25C | 109.5 |
O13—C16—H16A | 109.5 | O23—C26—H26A | 109.5 |
O13—C16—H16B | 109.5 | O23—C26—H26B | 109.5 |
H16A—C16—H16B | 109.5 | H26A—C26—H26B | 109.5 |
O13—C16—H16C | 109.5 | O23—C26—H26C | 109.5 |
H16A—C16—H16C | 109.5 | H26A—C26—H26C | 109.5 |
H16B—C16—H16C | 109.5 | H26B—C26—H26C | 109.5 |
| | | |
C13—N11—C11—O11 | 177.7 (2) | C23—N21—C21—O21 | 179.9 (2) |
C13—N11—C11—N12 | −2.5 (3) | C23—N21—C21—N22 | 0.2 (3) |
C12—N12—C11—O11 | −177.1 (2) | C22—N22—C21—O21 | −179.4 (2) |
C14—N12—C11—O11 | −0.6 (3) | C24—N22—C21—O21 | 1.6 (3) |
C12—N12—C11—N11 | 3.2 (3) | C22—N22—C21—N21 | 0.3 (3) |
C14—N12—C11—N11 | 179.6 (2) | C24—N22—C21—N21 | −178.7 (2) |
C13—N13—C12—O12 | 179.63 (18) | C23—N23—C22—O22 | −179.90 (17) |
C13—N13—C12—N12 | −0.4 (3) | C23—N23—C22—N22 | 0.0 (3) |
C15—O12—C12—N13 | −2.2 (3) | C25—O22—C22—N23 | 0.4 (3) |
C15—O12—C12—N12 | 177.8 (2) | C25—O22—C22—N22 | −179.53 (19) |
C11—N12—C12—N13 | −1.7 (3) | C21—N22—C22—N23 | −0.4 (3) |
C14—N12—C12—N13 | −178.0 (2) | C24—N22—C22—N23 | 178.5 (2) |
C11—N12—C12—O12 | 178.26 (18) | C21—N22—C22—O22 | 179.53 (18) |
C14—N12—C12—O12 | 1.9 (3) | C24—N22—C22—O22 | −1.5 (3) |
C11—N11—C13—O13 | −179.06 (19) | C21—N21—C23—O23 | 179.70 (19) |
C11—N11—C13—N13 | 0.4 (3) | C21—N21—C23—N23 | −0.7 (3) |
C16—O13—C13—N11 | −1.7 (3) | C26—O23—C23—N21 | −0.9 (3) |
C16—O13—C13—N13 | 178.72 (19) | C26—O23—C23—N23 | 179.4 (2) |
C12—N13—C13—N11 | 1.2 (3) | C22—N23—C23—N21 | 0.6 (3) |
C12—N13—C13—O13 | −179.36 (18) | C22—N23—C23—O23 | −179.80 (18) |
(HTP) 4,6-Dimethoxy-3-methyl-dihydro-triazine-2-one
top
Crystal data top
C6H9N3O3 | Dx = 1.393 Mg m−3 |
Mr = 171.16 | Mo Kα radiation, λ = 0.71070 Å |
Orthorhombic, Pnma | Cell parameters from 2809 reflections |
a = 8.465 (1) Å | θ = 1.0–25.9° |
b = 6.749 (1) Å | µ = 0.11 mm−1 |
c = 14.284 (2) Å | T = 320 K |
V = 816.0 (2) Å3 | Prism, colorless |
Z = 4 | 0.35 × 0.3 × 0.3 mm |
F(000) = 360 | |
Data collection top
Nonius KappaCCD diffractometer | 487 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.053 |
Graphite monochromator | θmax = 25.9°, θmin = 3.3° |
phi–scan | h = −10→10 |
2809 measured reflections | k = 0→8 |
854 independent reflections | l = −17→16 |
Refinement top
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.046 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.147 | w = 1/[σ2(Fo2) + (0.0911P)2] where P = (Fo2 + 2Fc2)/3 |
S = 0.98 | (Δ/σ)max = 0.117 |
854 reflections | Δρmax = 0.15 e Å−3 |
102 parameters | Δρmin = −0.16 e Å−3 |
0 restraints | Extinction correction: SHELXL, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.12 (3) |
Crystal data top
C6H9N3O3 | V = 816.0 (2) Å3 |
Mr = 171.16 | Z = 4 |
Orthorhombic, Pnma | Mo Kα radiation |
a = 8.465 (1) Å | µ = 0.11 mm−1 |
b = 6.749 (1) Å | T = 320 K |
c = 14.284 (2) Å | 0.35 × 0.3 × 0.3 mm |
Data collection top
Nonius KappaCCD diffractometer | 487 reflections with I > 2σ(I) |
2809 measured reflections | Rint = 0.053 |
854 independent reflections | |
Refinement top
R[F2 > 2σ(F2)] = 0.046 | 0 restraints |
wR(F2) = 0.147 | H atoms treated by a mixture of independent and constrained refinement |
S = 0.98 | (Δ/σ)max = 0.117 |
854 reflections | Δρmax = 0.15 e Å−3 |
102 parameters | Δρmin = −0.16 e Å−3 |
Special details top
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell e.s.d.'s are taken
into account individually in the estimation of e.s.d.'s in distances, angles
and torsion angles; correlations between e.s.d.'s in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s.
planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor
wR and goodness of fit S are based on F2, conventional
R-factors R are based on F, with F set to zero for
negative F2. The threshold expression of F2 >
σ(F2) is used only for calculating R-factors(gt) etc.
and is not relevant to the choice of reflections for refinement.
R-factors based on F2 are statistically about twice as large
as those based on F, and R- factors based on ALL data will be
even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | Occ. (<1) |
O1 | 0.7802 (3) | 0.2500 | −0.12775 (17) | 0.1135 (11) | |
O2 | 0.2604 (2) | 0.2500 | −0.06743 (17) | 0.0800 (8) | |
O3 | 0.6065 (2) | 0.2500 | 0.17215 (15) | 0.0831 (8) | |
N1 | 0.7064 (3) | 0.2500 | 0.02428 (18) | 0.0680 (8) | |
N2 | 0.5189 (3) | 0.2500 | −0.09802 (18) | 0.0643 (8) | |
N3 | 0.4308 (3) | 0.2500 | 0.05727 (18) | 0.0662 (8) | |
C1 | 0.6763 (4) | 0.2500 | −0.0694 (2) | 0.0714 (9) | |
C2 | 0.4045 (3) | 0.2500 | −0.0326 (2) | 0.0600 (8) | |
C3 | 0.5849 (3) | 0.2500 | 0.0793 (2) | 0.0610 (8) | |
C4 | 0.4847 (6) | 0.2500 | −0.1997 (3) | 0.0875 (12) | |
C5 | 0.1303 (5) | 0.2500 | −0.0008 (5) | 0.1011 (15) | |
C6 | 0.7687 (6) | 0.2500 | 0.2058 (4) | 0.1032 (15) | |
H4A | 0.368 (11) | 0.2500 | −0.205 (5) | 0.09 (2)* | 0.50 |
H4B | 0.595 (11) | 0.2500 | −0.222 (6) | 0.11 (3)* | 0.50 |
H4C | 0.419 (7) | 0.129 (9) | −0.212 (3) | 0.098 (17)* | 0.50 |
H4D | 0.538 (8) | 0.116 (10) | −0.222 (4) | 0.12 (2)* | 0.50 |
H5A | 0.135 (4) | 0.130 (5) | 0.041 (2) | 0.131 (12)* | |
H5B | 0.055 (8) | 0.2500 | −0.039 (4) | 0.16 (2)* | |
H6A | 0.816 (4) | 0.127 (5) | 0.184 (2) | 0.139 (12)* | |
H6B | 0.744 (6) | 0.2500 | 0.270 (4) | 0.142 (19)* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
O1 | 0.0681 (18) | 0.198 (3) | 0.0740 (18) | 0.000 | 0.0150 (13) | 0.000 |
O2 | 0.0506 (12) | 0.0957 (16) | 0.0937 (18) | 0.000 | −0.0162 (12) | 0.000 |
O3 | 0.0756 (16) | 0.1125 (18) | 0.0612 (16) | 0.000 | −0.0091 (12) | 0.000 |
N1 | 0.0511 (15) | 0.0905 (19) | 0.0623 (17) | 0.000 | −0.0050 (12) | 0.000 |
N2 | 0.0591 (16) | 0.0743 (16) | 0.0595 (16) | 0.000 | −0.0077 (12) | 0.000 |
N3 | 0.0519 (14) | 0.0819 (18) | 0.0648 (18) | 0.000 | 0.0004 (12) | 0.000 |
C1 | 0.0547 (18) | 0.092 (2) | 0.068 (2) | 0.000 | 0.0032 (17) | 0.000 |
C2 | 0.0481 (17) | 0.0610 (18) | 0.071 (2) | 0.000 | −0.0043 (14) | 0.000 |
C3 | 0.0595 (19) | 0.0673 (19) | 0.056 (2) | 0.000 | −0.0054 (15) | 0.000 |
C4 | 0.091 (3) | 0.107 (4) | 0.064 (2) | 0.000 | −0.017 (2) | 0.000 |
C5 | 0.051 (2) | 0.118 (4) | 0.134 (4) | 0.000 | −0.002 (2) | 0.000 |
C6 | 0.091 (3) | 0.135 (4) | 0.083 (3) | 0.000 | −0.029 (2) | 0.000 |
Geometric parameters (Å, º) top
O1—C1 | 1.212 (4) | N3—C2 | 1.303 (4) |
O2—C2 | 1.317 (3) | N3—C3 | 1.342 (4) |
O2—C5 | 1.456 (5) | C4—H4A | 0.99 (9) |
O3—C3 | 1.338 (4) | C4—H4B | 0.99 (9) |
O3—C6 | 1.454 (5) | C4—H4C | 1.00 (6) |
N1—C3 | 1.295 (4) | C4—H4D | 1.06 (6) |
N1—C1 | 1.362 (4) | C5—H5A | 1.01 (3) |
N2—C2 | 1.346 (4) | C5—H5B | 0.84 (6) |
N2—C1 | 1.393 (4) | C6—H6A | 0.98 (3) |
N2—C4 | 1.480 (4) | C6—H6B | 0.93 (6) |
| | | |
C2—O2—C5 | 117.0 (3) | N2—C4—H4A | 106 (4) |
C3—O3—C6 | 117.1 (3) | N2—C4—H4B | 98 (5) |
C3—N1—C1 | 116.7 (2) | H4A—C4—H4B | 156 (6) |
C2—N2—C1 | 119.0 (3) | N2—C4—H4C | 106 (3) |
C2—N2—C4 | 122.7 (3) | H4A—C4—H4C | 55 (3) |
C1—N2—C4 | 118.3 (3) | H4B—C4—H4C | 118 (4) |
C2—N3—C3 | 113.4 (3) | N2—C4—H4D | 102 (3) |
O1—C1—N1 | 122.7 (3) | H4A—C4—H4D | 114 (4) |
O1—C1—N2 | 119.5 (3) | H4B—C4—H4D | 60 (4) |
N1—C1—N2 | 117.8 (3) | H4C—C4—H4D | 60 (4) |
N3—C2—O2 | 122.0 (3) | O2—C5—H5A | 111.0 (19) |
N3—C2—N2 | 124.1 (3) | O2—C5—H5B | 98 (4) |
O2—C2—N2 | 113.9 (3) | H5A—C5—H5B | 115 (2) |
N1—C3—O3 | 119.6 (3) | O3—C6—H6A | 106 (2) |
N1—C3—N3 | 129.0 (3) | O3—C6—H6B | 96 (3) |
O3—C3—N3 | 111.4 (3) | H6A—C6—H6B | 114 (2) |
| | | |
C3—N1—C1—O1 | 180.0 | C1—N2—C2—N3 | 0.0 |
C3—N1—C1—N2 | 0.0 | C4—N2—C2—N3 | 180.0 |
C2—N2—C1—O1 | 180.0 | C1—N2—C2—O2 | 180.0 |
C4—N2—C1—O1 | 0.0 | C4—N2—C2—O2 | 0.0 |
C2—N2—C1—N1 | 0.0 | C1—N1—C3—O3 | 180.0 |
C4—N2—C1—N1 | 180.0 | C1—N1—C3—N3 | 0.0 |
C3—N3—C2—O2 | 180.0 | C6—O3—C3—N1 | 0.0 |
C3—N3—C2—N2 | 0.0 | C6—O3—C3—N3 | 180.0 |
C5—O2—C2—N3 | 0.0 | C2—N3—C3—N1 | 0.0 |
C5—O2—C2—N2 | 180.0 | C2—N3—C3—O3 | 180.0 |
HTP(359K) 4,6-Dimethoxy-3-methyl-dihydro-triazine-2-one
top
Crystal data top
C6H9N3O3 | Dx = 1.384 Mg m−3 |
Mr = 171.16 | Mo Kα radiation, λ = 0.71073 Å |
Orthorhombic, Pnma | Cell parameters from 1789 reflections |
a = 8.481 (1) Å | θ = 3.7–21.8° |
b = 6.780 (1) Å | µ = 0.11 mm−1 |
c = 14.284 (2) Å | T = 359 K |
V = 821.2 (2) Å3 | Prism, colourless |
Z = 4 | 0.35 × 0.30 × 0.30 mm |
F(000) = 360 | |
Data collection top
Siemens SMART diffractometer | 559 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.030 |
Graphite monochromator | θmax = 28.3°, θmin = 3.7° |
ω scans | h = −11→11 |
8424 measured reflections | k = −4→5 |
820 independent reflections | l = −19→8 |
Refinement top
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.056 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.166 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.04 | w = 1/[σ2(Fo2) + (0.1167P)2 + 0.0022P] where P = (Fo2 + 2Fc2)/3 |
820 reflections | (Δ/σ)max = 0.023 |
73 parameters | Δρmax = 0.25 e Å−3 |
0 restraints | Δρmin = −0.18 e Å−3 |
Crystal data top
C6H9N3O3 | V = 821.2 (2) Å3 |
Mr = 171.16 | Z = 4 |
Orthorhombic, Pnma | Mo Kα radiation |
a = 8.481 (1) Å | µ = 0.11 mm−1 |
b = 6.780 (1) Å | T = 359 K |
c = 14.284 (2) Å | 0.35 × 0.30 × 0.30 mm |
Data collection top
Siemens SMART diffractometer | 559 reflections with I > 2σ(I) |
8424 measured reflections | Rint = 0.030 |
820 independent reflections | |
Refinement top
R[F2 > 2σ(F2)] = 0.056 | 0 restraints |
wR(F2) = 0.166 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.04 | Δρmax = 0.25 e Å−3 |
820 reflections | Δρmin = −0.18 e Å−3 |
73 parameters | |
Special details top
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell e.s.d.'s are taken
into account individually in the estimation of e.s.d.'s in distances, angles
and torsion angles; correlations between e.s.d.'s in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s.
planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor
wR and goodness of fit S are based on F2, conventional
R-factors R are based on F, with F set to zero for
negative F2. The threshold expression of F2 >
σ(F2) is used only for calculating R-factors(gt) etc.
and is not relevant to the choice of reflections for refinement.
R-factors based on F2 are statistically about twice as large
as those based on F, and R- factors based on ALL data will be
even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | Occ. (<1) |
O1 | 0.7813 (2) | 0.2500 | −0.12774 (14) | 0.1212 (10) | |
O2 | 0.26221 (19) | 0.2500 | −0.06828 (14) | 0.0857 (8) | |
O3 | 0.60604 (19) | 0.2500 | 0.17173 (12) | 0.0899 (8) | |
N1 | 0.7066 (2) | 0.2500 | 0.02448 (14) | 0.0720 (8) | |
N2 | 0.5205 (2) | 0.2500 | −0.09817 (14) | 0.0674 (7) | |
N3 | 0.4309 (2) | 0.2500 | 0.05635 (14) | 0.0682 (7) | |
C1 | 0.6784 (3) | 0.2500 | −0.06886 (18) | 0.0757 (9) | |
C2 | 0.4063 (2) | 0.2500 | −0.03326 (17) | 0.0623 (8) | |
C3 | 0.5861 (3) | 0.2500 | 0.07951 (16) | 0.0639 (8) | |
C4 | 0.4864 (4) | 0.2500 | −0.19964 (18) | 0.0929 (10) | |
H4A | 0.5679 | 0.1790 | −0.2321 | 0.139* | 0.50 |
H4B | 0.4828 | 0.3839 | −0.2221 | 0.139* | 0.50 |
H4C | 0.3865 | 0.1871 | −0.2107 | 0.139* | 0.50 |
C5 | 0.1321 (3) | 0.2500 | −0.0014 (3) | 0.1072 (12) | |
H5A | 0.1320 | 0.3726 | 0.0327 | 0.161* | 0.50 |
H5B | 0.1451 | 0.1419 | 0.0416 | 0.161* | 0.50 |
H5C | 0.0338 | 0.2500 | −0.0341 | 0.161* | |
C6 | 0.7664 (4) | 0.2500 | 0.2067 (2) | 0.1134 (14) | |
H6A | 0.8290 | 0.3395 | 0.1700 | 0.170* | 0.50 |
H6B | 0.8094 | 0.1189 | 0.2021 | 0.170* | 0.50 |
H6C | 0.7673 | 0.2916 | 0.2710 | 0.170* | 0.50 |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
O1 | 0.0665 (13) | 0.217 (3) | 0.0801 (13) | 0.000 | 0.0158 (10) | 0.000 |
O2 | 0.0508 (9) | 0.105 (2) | 0.1011 (14) | 0.000 | −0.0198 (8) | 0.000 |
O3 | 0.0757 (12) | 0.127 (2) | 0.0664 (12) | 0.000 | −0.0059 (9) | 0.000 |
N1 | 0.0466 (9) | 0.100 (2) | 0.0693 (13) | 0.000 | −0.0059 (8) | 0.000 |
N2 | 0.0586 (11) | 0.0793 (19) | 0.0642 (12) | 0.000 | −0.0078 (9) | 0.000 |
N3 | 0.0506 (10) | 0.085 (2) | 0.0691 (12) | 0.000 | 0.0004 (8) | 0.000 |
C1 | 0.0535 (12) | 0.099 (3) | 0.0749 (17) | 0.000 | 0.0009 (11) | 0.000 |
C2 | 0.0474 (11) | 0.063 (2) | 0.0767 (16) | 0.000 | −0.0086 (10) | 0.000 |
C3 | 0.0570 (13) | 0.070 (2) | 0.0642 (14) | 0.000 | −0.0078 (10) | 0.000 |
C4 | 0.093 (2) | 0.122 (3) | 0.0642 (15) | 0.000 | −0.0131 (13) | 0.000 |
C5 | 0.0427 (11) | 0.136 (3) | 0.143 (3) | 0.000 | 0.0001 (14) | 0.000 |
C6 | 0.094 (2) | 0.157 (4) | 0.089 (2) | 0.000 | −0.0413 (17) | 0.000 |
Geometric parameters (Å, º) top
O1—C1 | 1.212 (3) | N3—C3 | 1.357 (3) |
O2—C2 | 1.320 (2) | C4—H4A | 0.9616 |
O2—C5 | 1.460 (3) | C4—H4B | 0.9633 |
O3—C3 | 1.328 (3) | C4—H4C | 0.9615 |
O3—C6 | 1.449 (3) | C5—H5A | 0.9629 |
N1—C3 | 1.289 (3) | C5—H5B | 0.9624 |
N1—C1 | 1.354 (3) | C5—H5C | 0.9560 |
N2—C2 | 1.341 (3) | C6—H6A | 0.9620 |
N2—C1 | 1.403 (3) | C6—H6B | 0.9632 |
N2—C4 | 1.478 (3) | C6—H6C | 0.9610 |
N3—C2 | 1.297 (3) | | |
| | | |
C2—O2—C5 | 116.8 (2) | N2—C4—H4B | 109.4 |
C3—O3—C6 | 117.5 (2) | H4A—C4—H4B | 109.6 |
C3—N1—C1 | 117.40 (19) | N2—C4—H4C | 109.5 |
C2—N2—C1 | 118.9 (2) | H4A—C4—H4C | 109.4 |
C2—N2—C4 | 122.5 (2) | H4B—C4—H4C | 109.6 |
C1—N2—C4 | 118.6 (2) | O2—C5—H5A | 109.3 |
C2—N3—C3 | 113.4 (2) | O2—C5—H5B | 109.3 |
O1—C1—N1 | 123.8 (2) | H5A—C5—H5B | 109.6 |
O1—C1—N2 | 118.7 (2) | O2—C5—H5C | 109.8 |
N1—C1—N2 | 117.5 (2) | H5A—C5—H5C | 104.3 |
N3—C2—O2 | 121.5 (2) | H5B—C5—H5C | 114.3 |
N3—C2—N2 | 124.5 (2) | O3—C6—H6A | 109.3 |
O2—C2—N2 | 114.0 (2) | O3—C6—H6B | 109.4 |
N1—C3—O3 | 120.2 (2) | H6A—C6—H6B | 109.6 |
N1—C3—N3 | 128.3 (2) | O3—C6—H6C | 109.7 |
O3—C3—N3 | 111.4 (2) | H6A—C6—H6C | 109.4 |
N2—C4—H4A | 109.4 | H6B—C6—H6C | 109.5 |
Experimental details
| (LTP) | (HTP) | HTP(359K) |
Crystal data |
Chemical formula | C6H9N3O3 | C6H9N3O3 | C6H9N3O3 |
Mr | 171.16 | 171.16 | 171.16 |
Crystal system, space group | Monoclinic, P21/n | Orthorhombic, Pnma | Orthorhombic, Pnma |
Temperature (K) | 298 | 320 | 359 |
a, b, c (Å) | 13.480 (2), 14.172 (2), 8.433 (1) | 8.465 (1), 6.749 (1), 14.284 (2) | 8.481 (1), 6.780 (1), 14.284 (2) |
α, β, γ (°) | 90, 92.07 (2), 90 | 90, 90, 90 | 90, 90, 90 |
V (Å3) | 1610.0 (2) | 816.0 (2) | 821.2 (2) |
Z | 8 | 4 | 4 |
Radiation type | Mo Kα | Mo Kα | Mo Kα |
µ (mm−1) | 0.12 | 0.11 | 0.11 |
Crystal size (mm) | 0.35 × 0.3 × 0.3 | 0.35 × 0.3 × 0.3 | 0.35 × 0.30 × 0.30 |
|
Data collection |
Diffractometer | Nonius KappaCCD diffractometer | Nonius KappaCCD diffractometer | Siemens SMART diffractometer |
Absorption correction | – | – | – |
No. of measured, independent and observed [I > 2σ(I)] reflections | 3758, 3758, 2273 | 2809, 854, 487 | 8424, 820, 559 |
Rint | 0.046 | 0.053 | 0.030 |
(sin θ/λ)max (Å−1) | 0.666 | 0.614 | 0.667 |
|
Refinement |
R[F2 > 2σ(F2)], wR(F2), S | 0.056, 0.180, 1.04 | 0.046, 0.147, 0.98 | 0.056, 0.166, 1.04 |
No. of reflections | 3758 | 854 | 820 |
No. of parameters | 224 | 102 | 73 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement | H atoms treated by a mixture of independent and constrained refinement | H atoms treated by a mixture of independent and constrained refinement |
(Δ/σ)max | 0.158 | 0.117 | 0.023 |
Δρmax, Δρmin (e Å−3) | 0.22, −0.18 | 0.15, −0.16 | 0.25, −0.18 |
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