Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S1600536807032953/bt2424sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S1600536807032953/bt2424Isup2.hkl |
CCDC reference: 629309
Key indicators
- Single-crystal X-ray study
- T = 200 K
- Mean (C-C) = 0.011 Å
- R factor = 0.074
- wR factor = 0.255
- Data-to-parameter ratio = 13.9
checkCIF/PLATON results
No syntax errors found
Alert level B PLAT222_ALERT_3_B Large Non-Solvent H Ueq(max)/Ueq(min) ... 4.53 Ratio
Alert level C RFACR01_ALERT_3_C The value of the weighted R factor is > 0.25 Weighted R factor given 0.255 PLAT084_ALERT_2_C High R2 Value .................................. 0.26 PLAT094_ALERT_2_C Ratio of Maximum / Minimum Residual Density .... 3.06 PLAT164_ALERT_4_C Nr. of Refined C-H H-Atoms in Heavy-At Struct... 2 PLAT220_ALERT_2_C Large Non-Solvent C Ueq(max)/Ueq(min) ... 3.18 Ratio PLAT230_ALERT_2_C Hirshfeld Test Diff for C17 - C18 .. 5.65 su PLAT242_ALERT_2_C Check Low Ueq as Compared to Neighbors for O10 PLAT244_ALERT_4_C Low 'Solvent' Ueq as Compared to Neighbors for Cl1 PLAT244_ALERT_4_C Low 'Solvent' Ueq as Compared to Neighbors for Cl2 PLAT245_ALERT_2_C U(iso) H2 Smaller than U(eq) C2 by ... 0.02 AngSq PLAT341_ALERT_3_C Low Bond Precision on C-C Bonds (x 1000) Ang ... 11 PLAT360_ALERT_2_C Short C(sp3)-C(sp3) Bond C13 - C14 ... 1.36 Ang.
Alert level G PLAT794_ALERT_5_G Check Predicted Bond Valency for Cu1 (1) 1.19
0 ALERT level A = In general: serious problem 1 ALERT level B = Potentially serious problem 12 ALERT level C = Check and explain 1 ALERT level G = General alerts; check 0 ALERT type 1 CIF construction/syntax error, inconsistent or missing data 7 ALERT type 2 Indicator that the structure model may be wrong or deficient 3 ALERT type 3 Indicator that the structure quality may be low 3 ALERT type 4 Improvement, methodology, query or suggestion 1 ALERT type 5 Informative message, check
For related literature, see: Addison et al. (1984); Chandler et al. (1981); Keypour et al. (2000, 2007); Yilmaz et al. (2003).
Safety note: Perchlorate complexes are potentially explosive. While we have not experienced any problems with the compounds described, they should be treated with caution and handled in small quantities. All of the reagents and solvents used were of analytical grade and purchased commercially. 2,9-dicarboxyaldehyde-1,10-phenanthroline was prepared by reaction of neocuproine with selenium dioxide (Chandler et al., 1981).
The title compound was prepared based on a previous method (Keypour et al., 2007). The chloride salt of the amine(0.5 mmol) was added to a solution of 2,9-dicarboxyaldehyde-1,10-phenanthroline (0.118 g, 0.5 mmol) and CuCl2 (0.5 mmol) in 200 ml EtOH/H2O (3/1 ratio). A NaOH solution was added dropwise over 2–3 hr to the above solution to give a pH of 7–7.5.The resulting solution was heated for 18–24 h. The solution was reduced in volume to ca 20–30 ml, then sodium perchlorate (1 mmol) was added and precipitate was filtered. Suitable crystals were obtained by slow diffusion of diethylether vapour into the MeOH/MeCN solution of the above solid.
[CuL](ClO4)2.MeCN.H2O Yield: 0.13 g (34%). analysis, calculated for C29H39N7Cl2O11Cu: C 41.1, H 5.2, N 12.9%; found: C 40.8, H 5.4, N 13.3%.IR (Nujol mull, ν cm-1): 3607, 3350, 3292, 1644 (νC═N imine), 1600, 1506, 1314, 1272, 1250, 1236, 1086, 934, 900, 885, 868, 721, 624, 568, 556.
All H atoms were initially located in a difference Fourier map. The methyl H atoms were then constrained to an ideal geometry with C—H distances of 0.98 Å and Uiso(H) = 1.5Ueq(C), but each group was allowed to rotate freely about its C—C bond. All other H atoms were placed in geometrically idealized positions and constrained to ride on their parent atoms with C—H distances in the range 0.95–1.00 Å and Uiso(H) = 1.2Ueq(C). The R factor is slightly high because of the high vibrational amplitude associated with the perchlorate anions.
We have been interested for some time in the design and synthesis of novel macrocyclic and macroacyclic Schiff base compounds (Keypour et al., 2000), The title compound was obtained by the templated condensation of tris(2-aminoethyl)amine (tren) with 2,9-dicarboxaldehyde-1,10-phenathroline in the presence of copper(II) perchlorate. Assignment of the complex as an acyclic Schiff base was based on the observation of a single sharp imine band at 1644 cm-1 in the infrared spectrum, indicating that the imine macroacycle had been formed. The solid-state structure involves a five-coordinate CuN5 chromophore constituted by one imine (N2), one phenanthroline (N1) and three amine (N3, N4, N5) N atoms of the pentadentate ligand. Additionally, the non-coordinating end of the ligand has undergone reaction with the ethanol solvent to yield the observed product. The angles of the coordination polyhedron surrounding the copper(II) centre suggest that the coordination geometry lies between square-based-pyramidal and trigonal-bipyramidal extremes. In this case, the structural index parameter (τ) can be used to identify the coordination geometry of the complex (Addison et al., 1984). τ is expressed as (β - α) /60°, where β and α correspond to two angles showing tendency to linearity and the τ values of square-based-pyramidal and trigonal-bipyramidal extremes are 0 and 1, respectively. For this complex, the N1—Cu—N3 and N2—Cu—N5 angles are 160.3 (2)° and 131.1 (2)°, respectively (table 1), giving a τ value of 0.498. This value is very close to τ = 1/2, which means approximately 50% contribution of each pyramidal form, with a slightly greater tendency toward square-based-pyramidal geometry (τ < 1/2). Consequently, the N1, N2, N3 and N5 atoms form the equatorial plane of the square-pyramid, while the N4 atom occupies the axial position (Yilmaz et al., 2003).
One of the H atoms of each of the amine groups not bonded to the copper forms intramolecular hydrogen bonds to the oxygen and the uncoordinated phenanthralene N atoms (N6), (Table 2). Hydrogen bonding is also observed between the oxygen atoms of the perchlorate anions and H(4 A), H(5 A), H(23) and H(24). In this way a network is formed.
For related literature, see: Addison et al. (1984); Chandler et al. (1981); Keypour et al. (2000, 2007); Yilmaz et al. (2003).
Data collection: Collect (Nonius, 2000); cell refinement: HKL SCALEPACK (Otwinowski & Minor, 1997); data reduction: HKL DENZO and SCALEPACK (Otwinowski & Minor, 1997); program(s) used to solve structure: SIR92 (Altomare et al., 1993); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997); software used to prepare material for publication: WinGX (Farrugia, 1999).
[Cu(C24H34N6O2)](ClO4)2 | F(000) = 2904 |
Mr = 701.01 | Dx = 1.531 Mg m−3 |
Orthorhombic, Pbca | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ac 2ab | Cell parameters from 11162 reflections |
a = 14.1439 (3) Å | θ = 1.0–25.4° |
b = 16.6060 (3) Å | µ = 0.96 mm−1 |
c = 25.8952 (6) Å | T = 200 K |
V = 6082.1 (2) Å3 | Prism, green |
Z = 8 | 0.25 × 0.2 × 0.15 mm |
Nonius KappaCCD diffractometer | 5524 independent reflections |
Radiation source: Enraf Nonius FR590 | 2925 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.076 |
Detector resolution: 9 pixels mm-1 | θmax = 25.3°, θmin = 3.0° |
CCD rotation images, thick slices scans | h = −17→17 |
Absorption correction: multi-scan Blessing (1995) | k = −19→19 |
Tmin = 0.796, Tmax = 0.870 | l = −31→31 |
19358 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.074 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.256 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.03 | w = 1/[σ2(Fo2) + (0.153P)2 + 0.4527P] where P = (Fo2 + 2Fc2)/3 |
5524 reflections | (Δ/σ)max = 0.003 |
396 parameters | Δρmax = 1.25 e Å−3 |
0 restraints | Δρmin = −0.41 e Å−3 |
[Cu(C24H34N6O2)](ClO4)2 | V = 6082.1 (2) Å3 |
Mr = 701.01 | Z = 8 |
Orthorhombic, Pbca | Mo Kα radiation |
a = 14.1439 (3) Å | µ = 0.96 mm−1 |
b = 16.6060 (3) Å | T = 200 K |
c = 25.8952 (6) Å | 0.25 × 0.2 × 0.15 mm |
Nonius KappaCCD diffractometer | 5524 independent reflections |
Absorption correction: multi-scan Blessing (1995) | 2925 reflections with I > 2σ(I) |
Tmin = 0.796, Tmax = 0.870 | Rint = 0.076 |
19358 measured reflections |
R[F2 > 2σ(F2)] = 0.074 | 0 restraints |
wR(F2) = 0.256 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.03 | Δρmax = 1.25 e Å−3 |
5524 reflections | Δρmin = −0.41 e Å−3 |
396 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
C1 | 0.6258 (4) | 0.4963 (4) | 0.6678 (3) | 0.0773 (18) | |
C2 | 0.6055 (6) | 0.5122 (6) | 0.7212 (3) | 0.089 (2) | |
C3 | 0.5350 (6) | 0.6030 (5) | 0.7832 (3) | 0.090 (2) | |
H3A | 0.5824 | 0.5854 | 0.8089 | 0.109* | |
H3B | 0.4722 | 0.5824 | 0.7936 | 0.109* | |
C4 | 0.5336 (5) | 0.6947 (5) | 0.7789 (3) | 0.088 (2) | |
H4A | 0.5026 | 0.7183 | 0.8096 | 0.106* | |
H4B | 0.599 | 0.7157 | 0.7769 | 0.106* | |
C5 | 0.3769 (4) | 0.7059 (5) | 0.7378 (2) | 0.0756 (18) | |
H5A | 0.3498 | 0.7533 | 0.7556 | 0.091* | |
H5B | 0.3653 | 0.6578 | 0.7595 | 0.091* | |
C6 | 0.3301 (5) | 0.6952 (5) | 0.6867 (3) | 0.0782 (18) | |
H6A | 0.2626 | 0.6815 | 0.6918 | 0.094* | |
H6B | 0.3337 | 0.746 | 0.6668 | 0.094* | |
C7 | 0.5050 (5) | 0.8008 (5) | 0.7152 (3) | 0.085 (2) | |
H7A | 0.514 | 0.8343 | 0.7465 | 0.102* | |
H7B | 0.4525 | 0.8243 | 0.6949 | 0.102* | |
C8 | 0.5945 (5) | 0.8017 (4) | 0.6833 (3) | 0.084 (2) | |
H8A | 0.6052 | 0.8561 | 0.6687 | 0.101* | |
H8B | 0.6495 | 0.7873 | 0.705 | 0.101* | |
C9 | 0.4628 (4) | 0.6876 (4) | 0.5202 (3) | 0.0733 (17) | |
C10 | 0.3885 (5) | 0.7492 (5) | 0.5363 (3) | 0.081 (2) | |
C11 | 0.2258 (5) | 0.7414 (5) | 0.5623 (3) | 0.100 (2) | |
H11A | 0.2072 | 0.7625 | 0.528 | 0.121* | |
H11B | 0.228 | 0.7869 | 0.587 | 0.121* | |
C12 | 0.1561 (5) | 0.6799 (6) | 0.5801 (4) | 0.107 (3) | |
H12A | 0.0932 | 0.7045 | 0.5824 | 0.161* | |
H12B | 0.1748 | 0.6598 | 0.6142 | 0.161* | |
H12C | 0.1544 | 0.6352 | 0.5555 | 0.161* | |
C13 | 0.4060 (10) | 0.8864 (6) | 0.5616 (5) | 0.145 (4) | |
H13A | 0.405 | 0.8946 | 0.5237 | 0.175* | |
H13B | 0.3416 | 0.8979 | 0.5747 | 0.175* | |
C14 | 0.4668 (11) | 0.9410 (8) | 0.5827 (8) | 0.211 (8) | |
H14A | 0.4468 | 0.9956 | 0.5733 | 0.317* | |
H14B | 0.5308 | 0.9313 | 0.5696 | 0.317* | |
H14C | 0.4664 | 0.9354 | 0.6204 | 0.317* | |
C15 | 0.6083 (4) | 0.5367 (4) | 0.5825 (3) | 0.0667 (16) | |
C16 | 0.5673 (4) | 0.5878 (4) | 0.5432 (2) | 0.0663 (16) | |
C17 | 0.6808 (6) | 0.4294 (5) | 0.6533 (4) | 0.096 (2) | |
H17 | 0.7009 | 0.3912 | 0.6783 | 0.115* | |
C18 | 0.7038 (5) | 0.4207 (4) | 0.6045 (4) | 0.099 (3) | |
H18 | 0.744 | 0.3774 | 0.5948 | 0.119* | |
C19 | 0.6708 (5) | 0.4735 (4) | 0.5662 (3) | 0.083 (2) | |
C20 | 0.6942 (5) | 0.4650 (5) | 0.5126 (4) | 0.097 (2) | |
H20 | 0.7365 | 0.4235 | 0.5023 | 0.116* | |
C21 | 0.6587 (5) | 0.5133 (5) | 0.4773 (3) | 0.091 (2) | |
H21 | 0.6777 | 0.5076 | 0.4423 | 0.109* | |
C22 | 0.5912 (5) | 0.5748 (4) | 0.4909 (3) | 0.0793 (19) | |
C23 | 0.5473 (5) | 0.6220 (5) | 0.4538 (3) | 0.087 (2) | |
H23 | 0.5624 | 0.6143 | 0.4184 | 0.105* | |
C24 | 0.4832 (5) | 0.6790 (5) | 0.4672 (3) | 0.083 (2) | |
H24 | 0.4533 | 0.7118 | 0.442 | 0.099* | |
O1 | 0.2518 (6) | 0.3662 (4) | 0.7218 (3) | 0.132 (2) | |
O2 | 0.3490 (6) | 0.4692 (4) | 0.7325 (3) | 0.155 (3) | |
O3 | 0.3851 (9) | 0.3810 (8) | 0.6723 (3) | 0.229 (6) | |
O4 | 0.2604 (6) | 0.4672 (5) | 0.6607 (3) | 0.155 (3) | |
O5 | 0.7883 (6) | 0.6157 (6) | 0.6525 (3) | 0.185 (4) | |
O6 | 0.7609 (5) | 0.6826 (6) | 0.5753 (3) | 0.176 (4) | |
O7 | 0.8571 (11) | 0.7340 (5) | 0.6342 (3) | 0.239 (7) | |
O8 | 0.9110 (8) | 0.6377 (7) | 0.5957 (5) | 0.235 (6) | |
O9 | 0.3156 (3) | 0.7038 (3) | 0.55923 (17) | 0.0819 (13) | |
O10 | 0.4268 (4) | 0.8049 (3) | 0.5714 (2) | 0.0931 (14) | |
Cl1 | 0.30966 (14) | 0.42004 (11) | 0.69472 (7) | 0.0820 (5) | |
Cl2 | 0.82578 (12) | 0.66199 (12) | 0.61327 (7) | 0.0840 (6) | |
Cu1 | 0.52275 (5) | 0.64203 (5) | 0.67161 (3) | 0.0631 (3) | |
N1 | 0.5886 (3) | 0.5476 (3) | 0.6334 (2) | 0.0653 (12) | |
N2 | 0.5600 (4) | 0.5739 (4) | 0.7319 (2) | 0.0773 (15) | |
N3 | 0.4799 (4) | 0.7174 (4) | 0.7308 (2) | 0.0739 (14) | |
N4 | 0.3779 (3) | 0.6302 (3) | 0.6584 (2) | 0.0654 (13) | |
H4C | 0.3653 | 0.6342 | 0.6236 | 0.078* | |
H4D | 0.3571 | 0.5808 | 0.6698 | 0.078* | |
N5 | 0.5829 (4) | 0.7423 (3) | 0.6412 (2) | 0.0721 (14) | |
H5C | 0.6408 | 0.7299 | 0.6271 | 0.087* | |
H5D | 0.545 | 0.7631 | 0.6157 | 0.087* | |
N6 | 0.5035 (4) | 0.6447 (3) | 0.5569 (2) | 0.0648 (13) | |
H2 | 0.628 (4) | 0.476 (4) | 0.743 (3) | 0.07 (2)* | |
H10 | 0.363 (5) | 0.777 (4) | 0.511 (3) | 0.08 (2)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.063 (4) | 0.063 (4) | 0.105 (6) | 0.005 (3) | −0.001 (4) | 0.011 (4) |
C2 | 0.084 (5) | 0.085 (6) | 0.097 (6) | −0.004 (4) | −0.004 (4) | 0.024 (5) |
C3 | 0.095 (5) | 0.106 (6) | 0.070 (4) | 0.016 (4) | −0.006 (4) | 0.016 (4) |
C4 | 0.085 (5) | 0.108 (6) | 0.071 (4) | 0.017 (4) | −0.010 (4) | −0.007 (4) |
C5 | 0.066 (4) | 0.095 (5) | 0.067 (4) | 0.011 (3) | 0.009 (3) | −0.006 (3) |
C6 | 0.066 (4) | 0.089 (5) | 0.080 (4) | 0.006 (4) | 0.003 (3) | 0.001 (4) |
C7 | 0.095 (5) | 0.077 (5) | 0.083 (5) | 0.010 (4) | −0.011 (4) | −0.018 (4) |
C8 | 0.079 (4) | 0.075 (5) | 0.098 (5) | −0.007 (4) | −0.009 (4) | −0.009 (4) |
C9 | 0.070 (4) | 0.077 (4) | 0.073 (4) | −0.008 (3) | 0.006 (3) | 0.003 (4) |
C10 | 0.076 (4) | 0.085 (5) | 0.083 (5) | 0.013 (4) | −0.003 (4) | 0.013 (4) |
C11 | 0.076 (5) | 0.107 (6) | 0.118 (6) | 0.025 (4) | 0.007 (4) | 0.021 (5) |
C12 | 0.069 (4) | 0.122 (7) | 0.132 (7) | 0.005 (5) | 0.003 (5) | −0.006 (6) |
C13 | 0.189 (12) | 0.069 (6) | 0.179 (10) | 0.018 (7) | −0.042 (9) | 0.015 (7) |
C14 | 0.192 (13) | 0.109 (10) | 0.33 (2) | −0.023 (9) | −0.066 (14) | 0.049 (12) |
C15 | 0.051 (3) | 0.054 (4) | 0.096 (5) | −0.003 (3) | 0.006 (3) | −0.008 (3) |
C16 | 0.059 (3) | 0.065 (4) | 0.075 (4) | −0.006 (3) | 0.005 (3) | −0.013 (3) |
C17 | 0.105 (6) | 0.071 (5) | 0.112 (6) | 0.018 (4) | 0.009 (5) | −0.001 (5) |
C18 | 0.078 (5) | 0.060 (5) | 0.160 (9) | 0.021 (4) | −0.007 (5) | −0.011 (5) |
C19 | 0.066 (4) | 0.069 (4) | 0.113 (6) | −0.003 (3) | 0.003 (4) | −0.020 (4) |
C20 | 0.087 (5) | 0.078 (5) | 0.126 (7) | 0.006 (4) | 0.022 (5) | −0.041 (5) |
C21 | 0.076 (4) | 0.104 (6) | 0.093 (5) | −0.016 (4) | 0.018 (4) | −0.028 (5) |
C22 | 0.065 (4) | 0.094 (5) | 0.080 (5) | −0.012 (4) | 0.012 (4) | −0.019 (4) |
C23 | 0.075 (4) | 0.112 (6) | 0.075 (5) | −0.033 (4) | 0.021 (4) | −0.018 (5) |
C24 | 0.076 (4) | 0.103 (5) | 0.070 (4) | −0.013 (4) | 0.004 (4) | 0.009 (4) |
O1 | 0.169 (6) | 0.092 (4) | 0.134 (5) | −0.038 (4) | 0.036 (4) | 0.016 (4) |
O2 | 0.192 (7) | 0.113 (5) | 0.161 (6) | −0.054 (5) | −0.059 (5) | 0.012 (5) |
O3 | 0.230 (11) | 0.331 (14) | 0.126 (6) | 0.134 (10) | 0.080 (6) | 0.052 (7) |
O4 | 0.161 (6) | 0.137 (6) | 0.166 (6) | −0.010 (5) | −0.072 (5) | 0.056 (5) |
O5 | 0.178 (7) | 0.261 (9) | 0.116 (5) | −0.134 (7) | −0.059 (5) | 0.088 (6) |
O6 | 0.101 (4) | 0.321 (11) | 0.107 (4) | −0.030 (6) | −0.015 (4) | 0.085 (6) |
O7 | 0.446 (19) | 0.138 (7) | 0.132 (6) | −0.105 (9) | −0.090 (9) | 0.024 (6) |
O8 | 0.195 (9) | 0.278 (13) | 0.232 (10) | 0.127 (9) | 0.085 (9) | 0.083 (10) |
O9 | 0.070 (3) | 0.092 (3) | 0.084 (3) | 0.012 (2) | 0.009 (2) | 0.013 (3) |
O10 | 0.104 (3) | 0.069 (3) | 0.106 (4) | 0.007 (3) | −0.023 (3) | −0.002 (3) |
Cl1 | 0.1012 (13) | 0.0670 (11) | 0.0779 (11) | −0.0026 (9) | 0.0058 (10) | 0.0090 (9) |
Cl2 | 0.0669 (10) | 0.0998 (14) | 0.0853 (12) | −0.0182 (9) | −0.0058 (9) | 0.0140 (10) |
Cu1 | 0.0602 (5) | 0.0609 (5) | 0.0682 (5) | 0.0034 (3) | 0.0013 (3) | 0.0005 (3) |
N1 | 0.055 (3) | 0.058 (3) | 0.083 (3) | −0.002 (2) | 0.004 (3) | 0.005 (3) |
N2 | 0.075 (3) | 0.077 (4) | 0.081 (4) | 0.006 (3) | 0.005 (3) | 0.013 (3) |
N3 | 0.071 (3) | 0.082 (4) | 0.069 (3) | 0.009 (3) | −0.004 (3) | −0.005 (3) |
N4 | 0.068 (3) | 0.056 (3) | 0.072 (3) | 0.003 (2) | 0.010 (2) | 0.002 (2) |
N5 | 0.065 (3) | 0.066 (3) | 0.085 (4) | −0.003 (3) | 0.002 (3) | −0.005 (3) |
N6 | 0.065 (3) | 0.063 (3) | 0.065 (3) | −0.004 (2) | 0.005 (2) | −0.001 (3) |
C1—N1 | 1.340 (8) | C13—H13A | 0.99 |
C1—C17 | 1.408 (10) | C13—H13B | 0.99 |
C1—C2 | 1.438 (10) | C14—H14A | 0.98 |
C2—N2 | 1.240 (10) | C14—H14B | 0.98 |
C2—H2 | 0.89 (7) | C14—H14C | 0.98 |
C3—N2 | 1.457 (9) | C15—N1 | 1.360 (8) |
C3—C4 | 1.528 (12) | C15—C19 | 1.437 (9) |
C3—H3A | 0.99 | C15—C16 | 1.445 (9) |
C3—H3B | 0.99 | C16—N6 | 1.356 (8) |
C4—N3 | 1.506 (8) | C16—C22 | 1.411 (9) |
C4—H4A | 0.99 | C17—C18 | 1.311 (11) |
C4—H4B | 0.99 | C17—H17 | 0.95 |
C5—N3 | 1.480 (8) | C18—C19 | 1.404 (11) |
C5—C6 | 1.489 (9) | C18—H18 | 0.95 |
C5—H5A | 0.99 | C19—C20 | 1.434 (11) |
C5—H5B | 0.99 | C20—C21 | 1.316 (11) |
C6—N4 | 1.471 (8) | C20—H20 | 0.95 |
C6—H6A | 0.99 | C21—C22 | 1.442 (10) |
C6—H6B | 0.99 | C21—H21 | 0.95 |
C7—N3 | 1.486 (10) | C22—C23 | 1.387 (11) |
C7—C8 | 1.512 (10) | C23—C24 | 1.355 (11) |
C7—H7A | 0.99 | C23—H23 | 0.95 |
C7—H7B | 0.99 | C24—H24 | 0.95 |
C8—N5 | 1.479 (9) | O1—Cl1 | 1.401 (6) |
C8—H8A | 0.99 | O2—Cl1 | 1.390 (7) |
C8—H8B | 0.99 | O3—Cl1 | 1.376 (9) |
C9—N6 | 1.320 (8) | O4—Cl1 | 1.369 (6) |
C9—C24 | 1.409 (10) | O5—Cl2 | 1.379 (6) |
C9—C10 | 1.525 (10) | O6—Cl2 | 1.388 (7) |
C10—O10 | 1.407 (9) | O7—Cl2 | 1.386 (8) |
C10—O9 | 1.408 (9) | O8—Cl2 | 1.350 (9) |
C10—H10 | 0.89 (7) | Cu1—N2 | 1.999 (6) |
C11—O9 | 1.418 (8) | Cu1—N5 | 2.028 (5) |
C11—C12 | 1.492 (12) | Cu1—N3 | 2.069 (5) |
C11—H11A | 0.99 | Cu1—N1 | 2.074 (5) |
C11—H11B | 0.99 | Cu1—N4 | 2.086 (5) |
C12—H12A | 0.98 | N4—H4C | 0.92 |
C12—H12B | 0.98 | N4—H4D | 0.92 |
C12—H12C | 0.98 | N5—H5C | 0.92 |
C13—C14 | 1.364 (16) | N5—H5D | 0.92 |
C13—O10 | 1.408 (10) | ||
N1—C1—C17 | 122.8 (8) | C19—C15—C16 | 118.0 (6) |
N1—C1—C2 | 116.4 (7) | N6—C16—C22 | 121.1 (6) |
C17—C1—C2 | 120.8 (8) | N6—C16—C15 | 119.5 (6) |
N2—C2—C1 | 117.9 (8) | C22—C16—C15 | 119.3 (6) |
N2—C2—H2 | 127 (4) | C18—C17—C1 | 118.8 (8) |
C1—C2—H2 | 115 (4) | C18—C17—H17 | 120.6 |
N2—C3—C4 | 105.5 (6) | C1—C17—H17 | 120.6 |
N2—C3—H3A | 110.6 | C17—C18—C19 | 121.9 (7) |
C4—C3—H3A | 110.6 | C17—C18—H18 | 119 |
N2—C3—H3B | 110.6 | C19—C18—H18 | 119 |
C4—C3—H3B | 110.6 | C18—C19—C20 | 123.1 (8) |
H3A—C3—H3B | 108.8 | C18—C19—C15 | 117.0 (7) |
N3—C4—C3 | 108.4 (6) | C20—C19—C15 | 119.9 (7) |
N3—C4—H4A | 110 | C21—C20—C19 | 121.6 (7) |
C3—C4—H4A | 110 | C21—C20—H20 | 119.2 |
N3—C4—H4B | 110 | C19—C20—H20 | 119.2 |
C3—C4—H4B | 110 | C20—C21—C22 | 121.0 (7) |
H4A—C4—H4B | 108.4 | C20—C21—H21 | 119.5 |
N3—C5—C6 | 110.2 (5) | C22—C21—H21 | 119.5 |
N3—C5—H5A | 109.6 | C23—C22—C16 | 118.1 (6) |
C6—C5—H5A | 109.6 | C23—C22—C21 | 121.8 (7) |
N3—C5—H5B | 109.6 | C16—C22—C21 | 120.1 (7) |
C6—C5—H5B | 109.6 | C24—C23—C22 | 121.2 (7) |
H5A—C5—H5B | 108.1 | C24—C23—H23 | 119.4 |
N4—C6—C5 | 109.0 (5) | C22—C23—H23 | 119.4 |
N4—C6—H6A | 109.9 | C23—C24—C9 | 117.1 (7) |
C5—C6—H6A | 109.9 | C23—C24—H24 | 121.4 |
N4—C6—H6B | 109.9 | C9—C24—H24 | 121.4 |
C5—C6—H6B | 109.9 | C10—O9—C11 | 116.4 (6) |
H6A—C6—H6B | 108.3 | C10—O10—C13 | 115.7 (7) |
N3—C7—C8 | 110.9 (6) | O4—Cl1—O3 | 113.1 (5) |
N3—C7—H7A | 109.5 | O4—Cl1—O2 | 108.7 (5) |
C8—C7—H7A | 109.5 | O3—Cl1—O2 | 105.2 (8) |
N3—C7—H7B | 109.5 | O4—Cl1—O1 | 113.0 (5) |
C8—C7—H7B | 109.5 | O3—Cl1—O1 | 111.3 (7) |
H7A—C7—H7B | 108.1 | O2—Cl1—O1 | 104.8 (4) |
N5—C8—C7 | 107.7 (6) | O8—Cl2—O5 | 115.2 (7) |
N5—C8—H8A | 110.2 | O8—Cl2—O7 | 95.9 (9) |
C7—C8—H8A | 110.2 | O5—Cl2—O7 | 108.4 (6) |
N5—C8—H8B | 110.2 | O8—Cl2—O6 | 115.1 (6) |
C7—C8—H8B | 110.2 | O5—Cl2—O6 | 113.9 (4) |
H8A—C8—H8B | 108.5 | O7—Cl2—O6 | 106.0 (7) |
N6—C9—C24 | 123.9 (7) | N2—Cu1—N5 | 131.1 (2) |
N6—C9—C10 | 117.8 (6) | N2—Cu1—N3 | 80.9 (2) |
C24—C9—C10 | 118.3 (7) | N5—Cu1—N3 | 85.0 (2) |
O10—C10—O9 | 111.1 (6) | N2—Cu1—N1 | 80.0 (2) |
O10—C10—C9 | 110.6 (6) | N5—Cu1—N1 | 104.3 (2) |
O9—C10—C9 | 105.1 (6) | N3—Cu1—N1 | 160.3 (2) |
O10—C10—H10 | 107 (4) | N2—Cu1—N4 | 109.5 (2) |
O9—C10—H10 | 107 (4) | N5—Cu1—N4 | 115.2 (2) |
C9—C10—H10 | 116 (4) | N3—Cu1—N4 | 83.8 (2) |
O9—C11—C12 | 108.0 (6) | N1—Cu1—N4 | 106.90 (19) |
O9—C11—H11A | 110.1 | C1—N1—C15 | 118.7 (5) |
C12—C11—H11A | 110.1 | C1—N1—Cu1 | 109.9 (4) |
O9—C11—H11B | 110.1 | C15—N1—Cu1 | 130.9 (4) |
C12—C11—H11B | 110.1 | C2—N2—C3 | 127.0 (7) |
H11A—C11—H11B | 108.4 | C2—N2—Cu1 | 115.5 (6) |
C11—C12—H12A | 109.5 | C3—N2—Cu1 | 117.4 (5) |
C11—C12—H12B | 109.5 | C5—N3—C7 | 112.8 (5) |
H12A—C12—H12B | 109.5 | C5—N3—C4 | 111.3 (5) |
C11—C12—H12C | 109.5 | C7—N3—C4 | 109.7 (6) |
H12A—C12—H12C | 109.5 | C5—N3—Cu1 | 107.5 (4) |
H12B—C12—H12C | 109.5 | C7—N3—Cu1 | 107.1 (4) |
C14—C13—O10 | 115.8 (10) | C4—N3—Cu1 | 108.3 (4) |
C14—C13—H13A | 108.3 | C6—N4—Cu1 | 107.5 (4) |
O10—C13—H13A | 108.3 | C6—N4—H4C | 110.2 |
C14—C13—H13B | 108.3 | Cu1—N4—H4C | 110.2 |
O10—C13—H13B | 108.3 | C6—N4—H4D | 110.2 |
H13A—C13—H13B | 107.4 | Cu1—N4—H4D | 110.2 |
C13—C14—H14A | 109.5 | H4C—N4—H4D | 108.5 |
C13—C14—H14B | 109.5 | C8—N5—Cu1 | 108.0 (4) |
H14A—C14—H14B | 109.5 | C8—N5—H5C | 110.1 |
C13—C14—H14C | 109.5 | Cu1—N5—H5C | 110.1 |
H14A—C14—H14C | 109.5 | C8—N5—H5D | 110.1 |
H14B—C14—H14C | 109.5 | Cu1—N5—H5D | 110.1 |
N1—C15—C19 | 120.5 (6) | H5C—N5—H5D | 108.4 |
N1—C15—C16 | 121.5 (5) | C9—N6—C16 | 118.6 (6) |
N1—C1—C2—N2 | −3.9 (10) | N4—Cu1—N1—C1 | −112.0 (4) |
C17—C1—C2—N2 | 177.0 (7) | N2—Cu1—N1—C15 | −175.4 (5) |
N2—C3—C4—N3 | 46.2 (7) | N5—Cu1—N1—C15 | −45.3 (6) |
N3—C5—C6—N4 | 53.2 (8) | N3—Cu1—N1—C15 | −162.0 (6) |
N3—C7—C8—N5 | 51.2 (8) | N4—Cu1—N1—C15 | 77.1 (5) |
N6—C9—C10—O10 | 57.6 (8) | C1—C2—N2—C3 | −177.4 (7) |
C24—C9—C10—O10 | −123.2 (7) | C1—C2—N2—Cu1 | −0.3 (9) |
N6—C9—C10—O9 | −62.4 (8) | C4—C3—N2—C2 | 148.1 (7) |
C24—C9—C10—O9 | 116.8 (7) | C4—C3—N2—Cu1 | −29.0 (7) |
N1—C15—C16—N6 | −4.0 (8) | N5—Cu1—N2—C2 | −97.7 (6) |
C19—C15—C16—N6 | 175.8 (5) | N3—Cu1—N2—C2 | −172.9 (6) |
N1—C15—C16—C22 | 179.0 (5) | N1—Cu1—N2—C2 | 2.6 (5) |
C19—C15—C16—C22 | −1.1 (8) | N4—Cu1—N2—C2 | 107.1 (6) |
N1—C1—C17—C18 | 6.3 (12) | N5—Cu1—N2—C3 | 79.8 (6) |
C2—C1—C17—C18 | −174.7 (7) | N3—Cu1—N2—C3 | 4.6 (5) |
C1—C17—C18—C19 | −3.7 (13) | N1—Cu1—N2—C3 | −179.9 (5) |
C17—C18—C19—C20 | −179.5 (8) | N4—Cu1—N2—C3 | −75.4 (6) |
C17—C18—C19—C15 | −1.6 (11) | C6—C5—N3—C7 | 79.5 (7) |
N1—C15—C19—C18 | 4.8 (9) | C6—C5—N3—C4 | −156.7 (6) |
C16—C15—C19—C18 | −175.1 (6) | C6—C5—N3—Cu1 | −38.3 (7) |
N1—C15—C19—C20 | −177.2 (6) | C8—C7—N3—C5 | −151.0 (6) |
C16—C15—C19—C20 | 2.9 (9) | C8—C7—N3—C4 | 84.3 (7) |
C18—C19—C20—C21 | 176.8 (7) | C8—C7—N3—Cu1 | −33.0 (7) |
C15—C19—C20—C21 | −1.0 (11) | C3—C4—N3—C5 | 74.3 (7) |
C19—C20—C21—C22 | −2.7 (12) | C3—C4—N3—C7 | −160.2 (6) |
N6—C16—C22—C23 | 0.0 (9) | C3—C4—N3—Cu1 | −43.6 (6) |
C15—C16—C22—C23 | 176.9 (6) | N2—Cu1—N3—C5 | −98.5 (5) |
N6—C16—C22—C21 | −179.4 (6) | N5—Cu1—N3—C5 | 128.5 (5) |
C15—C16—C22—C21 | −2.5 (9) | N1—Cu1—N3—C5 | −111.8 (6) |
C20—C21—C22—C23 | −174.8 (7) | N4—Cu1—N3—C5 | 12.5 (4) |
C20—C21—C22—C16 | 4.5 (10) | N2—Cu1—N3—C7 | 140.0 (4) |
C16—C22—C23—C24 | −0.1 (10) | N5—Cu1—N3—C7 | 7.1 (5) |
C21—C22—C23—C24 | 179.3 (7) | N1—Cu1—N3—C7 | 126.7 (6) |
C22—C23—C24—C9 | −0.4 (11) | N4—Cu1—N3—C7 | −109.0 (4) |
N6—C9—C24—C23 | 1.2 (11) | N2—Cu1—N3—C4 | 21.9 (5) |
C10—C9—C24—C23 | −177.9 (6) | N5—Cu1—N3—C4 | −111.1 (5) |
O10—C10—O9—C11 | 80.3 (8) | N1—Cu1—N3—C4 | 8.6 (9) |
C9—C10—O9—C11 | −160.0 (6) | N4—Cu1—N3—C4 | 132.8 (5) |
C12—C11—O9—C10 | 171.5 (7) | C5—C6—N4—Cu1 | −39.9 (6) |
O9—C10—O10—C13 | −109.5 (9) | N2—Cu1—N4—C6 | 93.0 (4) |
C9—C10—O10—C13 | 134.1 (8) | N5—Cu1—N4—C6 | −66.5 (4) |
C14—C13—O10—C10 | −157.8 (13) | N3—Cu1—N4—C6 | 15.0 (4) |
C17—C1—N1—C15 | −3.1 (9) | N1—Cu1—N4—C6 | 178.1 (4) |
C2—C1—N1—C15 | 177.9 (6) | C7—C8—N5—Cu1 | −42.9 (6) |
C17—C1—N1—Cu1 | −175.3 (6) | N2—Cu1—N5—C8 | −53.3 (5) |
C2—C1—N1—Cu1 | 5.7 (7) | N3—Cu1—N5—C8 | 20.1 (4) |
C19—C15—N1—C1 | −2.5 (8) | N1—Cu1—N5—C8 | −142.3 (4) |
C16—C15—N1—C1 | 177.4 (5) | N4—Cu1—N5—C8 | 100.8 (4) |
C19—C15—N1—Cu1 | 167.8 (4) | C24—C9—N6—C16 | −1.3 (10) |
C16—C15—N1—Cu1 | −12.3 (8) | C10—C9—N6—C16 | 177.8 (6) |
N2—Cu1—N1—C1 | −4.4 (4) | C22—C16—N6—C9 | 0.7 (9) |
N5—Cu1—N1—C1 | 125.6 (4) | C15—C16—N6—C9 | −176.2 (5) |
N3—Cu1—N1—C1 | 8.9 (8) |
D—H···A | D—H | H···A | D···A | D—H···A |
N4—H4C···O9 | 0.92 | 2.15 | 2.977 (7) | 150 |
N4—H4C···N6 | 0.92 | 2.61 | 3.182 (7) | 120 |
N5—H5D···O10 | 0.92 | 2.14 | 3.037 (8) | 164 |
N5—H5D···N6 | 0.92 | 2.56 | 2.942 (7) | 106 |
C4—H4A···O7i | 0.99 | 2.53 | 3.424 (15) | 150 |
C5—H5A···O1ii | 0.99 | 2.52 | 3.251 (10) | 131 |
C23—H23···O3iii | 0.95 | 2.46 | 3.403 (11) | 169 |
C24—H24···O7iv | 0.95 | 2.56 | 3.488 (13) | 166 |
Symmetry codes: (i) x−1/2, y, −z+3/2; (ii) −x+1/2, y+1/2, z; (iii) −x+1, −y+1, −z+1; (iv) x−1/2, −y+3/2, −z+1. |
Experimental details
Crystal data | |
Chemical formula | [Cu(C24H34N6O2)](ClO4)2 |
Mr | 701.01 |
Crystal system, space group | Orthorhombic, Pbca |
Temperature (K) | 200 |
a, b, c (Å) | 14.1439 (3), 16.6060 (3), 25.8952 (6) |
V (Å3) | 6082.1 (2) |
Z | 8 |
Radiation type | Mo Kα |
µ (mm−1) | 0.96 |
Crystal size (mm) | 0.25 × 0.2 × 0.15 |
Data collection | |
Diffractometer | Nonius KappaCCD |
Absorption correction | Multi-scan Blessing (1995) |
Tmin, Tmax | 0.796, 0.870 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 19358, 5524, 2925 |
Rint | 0.076 |
(sin θ/λ)max (Å−1) | 0.602 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.074, 0.256, 1.03 |
No. of reflections | 5524 |
No. of parameters | 396 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 1.25, −0.41 |
Computer programs: Collect (Nonius, 2000), HKL SCALEPACK (Otwinowski & Minor, 1997), HKL DENZO and SCALEPACK (Otwinowski & Minor, 1997), SIR92 (Altomare et al., 1993), SHELXL97 (Sheldrick, 1997), ORTEP-3 for Windows (Farrugia, 1997), WinGX (Farrugia, 1999).
N2—Cu1—N5 | 131.1 (2) | N3—Cu1—N1 | 160.3 (2) |
N2—Cu1—N3 | 80.9 (2) | N2—Cu1—N4 | 109.5 (2) |
N5—Cu1—N3 | 85.0 (2) | N5—Cu1—N4 | 115.2 (2) |
N2—Cu1—N1 | 80.0 (2) | N3—Cu1—N4 | 83.8 (2) |
N5—Cu1—N1 | 104.3 (2) | N1—Cu1—N4 | 106.90 (19) |
D—H···A | D—H | H···A | D···A | D—H···A |
N4—H4C···O9 | 0.92 | 2.15 | 2.977 (7) | 150 |
N4—H4C···N6 | 0.92 | 2.61 | 3.182 (7) | 120 |
N5—H5D···O10 | 0.92 | 2.14 | 3.037 (8) | 164 |
N5—H5D···N6 | 0.92 | 2.56 | 2.942 (7) | 106 |
C4—H4A···O7i | 0.99 | 2.53 | 3.424 (15) | 150 |
C5—H5A···O1ii | 0.99 | 2.52 | 3.251 (10) | 131 |
C23—H23···O3iii | 0.95 | 2.46 | 3.403 (11) | 169 |
C24—H24···O7iv | 0.95 | 2.56 | 3.488 (13) | 166 |
Symmetry codes: (i) x−1/2, y, −z+3/2; (ii) −x+1/2, y+1/2, z; (iii) −x+1, −y+1, −z+1; (iv) x−1/2, −y+3/2, −z+1. |
Subscribe to Acta Crystallographica Section E: Crystallographic Communications
The full text of this article is available to subscribers to the journal.
- Information on subscribing
- Sample issue
- If you have already subscribed, you may need to register
We have been interested for some time in the design and synthesis of novel macrocyclic and macroacyclic Schiff base compounds (Keypour et al., 2000), The title compound was obtained by the templated condensation of tris(2-aminoethyl)amine (tren) with 2,9-dicarboxaldehyde-1,10-phenathroline in the presence of copper(II) perchlorate. Assignment of the complex as an acyclic Schiff base was based on the observation of a single sharp imine band at 1644 cm-1 in the infrared spectrum, indicating that the imine macroacycle had been formed. The solid-state structure involves a five-coordinate CuN5 chromophore constituted by one imine (N2), one phenanthroline (N1) and three amine (N3, N4, N5) N atoms of the pentadentate ligand. Additionally, the non-coordinating end of the ligand has undergone reaction with the ethanol solvent to yield the observed product. The angles of the coordination polyhedron surrounding the copper(II) centre suggest that the coordination geometry lies between square-based-pyramidal and trigonal-bipyramidal extremes. In this case, the structural index parameter (τ) can be used to identify the coordination geometry of the complex (Addison et al., 1984). τ is expressed as (β - α) /60°, where β and α correspond to two angles showing tendency to linearity and the τ values of square-based-pyramidal and trigonal-bipyramidal extremes are 0 and 1, respectively. For this complex, the N1—Cu—N3 and N2—Cu—N5 angles are 160.3 (2)° and 131.1 (2)°, respectively (table 1), giving a τ value of 0.498. This value is very close to τ = 1/2, which means approximately 50% contribution of each pyramidal form, with a slightly greater tendency toward square-based-pyramidal geometry (τ < 1/2). Consequently, the N1, N2, N3 and N5 atoms form the equatorial plane of the square-pyramid, while the N4 atom occupies the axial position (Yilmaz et al., 2003).
One of the H atoms of each of the amine groups not bonded to the copper forms intramolecular hydrogen bonds to the oxygen and the uncoordinated phenanthralene N atoms (N6), (Table 2). Hydrogen bonding is also observed between the oxygen atoms of the perchlorate anions and H(4 A), H(5 A), H(23) and H(24). In this way a network is formed.