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In the title compound, C7H8N4, the C atom of the bridging methylene group lies on a twofold rotation axis. The dihedral angle between the symmetry-related imidazole rings is 75.0 (2)°. The crystal packing is stabilized by van der Waals forces.
Supporting information
CCDC reference: 608590
Key indicators
- Single-crystal X-ray study
- T = 293 K
- Mean (C-C) = 0.003 Å
- R factor = 0.048
- wR factor = 0.123
- Data-to-parameter ratio = 9.8
checkCIF/PLATON results
No syntax errors found
Alert level C
ABSTM02_ALERT_3_C The ratio of expected to reported Tmax/Tmin(RR') is < 0.90
Tmin and Tmax reported: 0.757 0.998
Tmin(prime) and Tmax expected: 0.956 0.972
RR(prime) = 0.771
Please check that your absorption correction is appropriate.
PLAT031_ALERT_4_C Refined Extinction Parameter within Range ...... 2.75 Sigma
PLAT061_ALERT_3_C Tmax/Tmin Range Test RR' too Large ............. 0.77
PLAT062_ALERT_4_C Rescale T(min) & T(max) by ..................... 0.97
PLAT125_ALERT_4_C No _symmetry_space_group_name_Hall Given ....... ?
PLAT199_ALERT_1_C Check the Reported _cell_measurement_temperature 293 K
PLAT764_ALERT_4_C Overcomplete CIF Bond List Detected (Rep/Expd) . 1.17 Ratio
Alert level G
REFLT03_ALERT_4_G Please check that the estimate of the number of Friedel pairs is
correct. If it is not, please give the correct count in the
_publ_section_exptl_refinement section of the submitted CIF.
From the CIF: _diffrn_reflns_theta_max 27.00
From the CIF: _reflns_number_total 508
Count of symmetry unique reflns 508
Completeness (_total/calc) 100.00%
TEST3: Check Friedels for noncentro structure
Estimate of Friedel pairs measured 0
Fraction of Friedel pairs measured 0.000
Are heavy atom types Z>Si present no
0 ALERT level A = In general: serious problem
0 ALERT level B = Potentially serious problem
7 ALERT level C = Check and explain
1 ALERT level G = General alerts; check
1 ALERT type 1 CIF construction/syntax error, inconsistent or missing data
0 ALERT type 2 Indicator that the structure model may be wrong or deficient
2 ALERT type 3 Indicator that the structure quality may be low
5 ALERT type 4 Improvement, methodology, query or suggestion
Data collection: SMART (Bruker, 1998); cell refinement: SMART; data reduction: SAINT (Bruker, 1998); program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: SHELXTL (Bruker, 1998); software used to prepare material for publication: SHELXTL.
Bis(imidazol-1-yl)methane
top
Crystal data top
C7H8N4 | Dx = 1.332 Mg m−3 |
Mr = 148.17 | Melting point = 429–431 K |
Orthorhombic, P21212 | Mo Kα radiation, λ = 0.71073 Å |
a = 8.0357 (18) Å | Cell parameters from 1241 reflections |
b = 10.545 (2) Å | θ = 6.4–53.0° |
c = 4.3613 (10) Å | µ = 0.09 mm−1 |
V = 369.55 (15) Å3 | T = 293 K |
Z = 2 | Block, colourless |
F(000) = 156 | 0.49 × 0.45 × 0.32 mm |
Data collection top
Bruker SMART CCD area-detector diffractometer | 508 independent reflections |
Radiation source: fine-focus sealed tube | 461 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.079 |
φ and ω scans | θmax = 27.0°, θmin = 3.2° |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | h = −10→7 |
Tmin = 0.757, Tmax = 0.998 | k = −13→13 |
2176 measured reflections | l = −5→5 |
Refinement top
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.048 | H-atom parameters constrained |
wR(F2) = 0.123 | w = 1/[σ2(Fo2) + (0.0898P)2 + 0.003P] where P = (Fo2 + 2Fc2)/3 |
S = 1.02 | (Δ/σ)max = 0.007 |
508 reflections | Δρmax = 0.19 e Å−3 |
52 parameters | Δρmin = −0.17 e Å−3 |
0 restraints | Extinction correction: SHELXL97, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.11 (4) |
Special details top
Experimental. 1H NMR (300 MHz, CDCl3): δ 6.87 (2H, s), 6.77 (2H,
s), 5.77 (2H, s); 13C NMR: δ 144.8, 128.9, 119.1,
55.7. It was crystallized by slow evaporation of a chloroform–methanol (5:1
v/v) mixture (yield 200 mg, 78%; m.p. 441–442 K) |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell e.s.d.'s are taken
into account individually in the estimation of e.s.d.'s in distances, angles
and torsion angles; correlations between e.s.d.'s in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s.
planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor
wR and goodness of fit S are based on F2, conventional
R-factors R are based on F, with F set to zero for
negative F2. The threshold expression of F2 >
σ(F2) is used only for calculating R-factors(gt) etc.
and is not relevant to the choice of reflections for refinement.
R-factors based on F2 are statistically about twice as large
as those based on F, and R- factors based on ALL data will be
even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
N1 | 0.2438 (2) | 0.27007 (13) | 0.3079 (5) | 0.0676 (7) | |
N2 | 0.11821 (17) | 0.43083 (13) | 0.0844 (4) | 0.0432 (5) | |
C1 | 0.1230 (2) | 0.30409 (17) | 0.1293 (6) | 0.0581 (6) | |
H1A | 0.0480 | 0.2476 | 0.0418 | 0.070* | |
C2 | 0.3227 (3) | 0.38050 (16) | 0.3841 (6) | 0.0586 (6) | |
H2A | 0.4151 | 0.3859 | 0.5118 | 0.070* | |
C3 | 0.2487 (2) | 0.48015 (14) | 0.2497 (4) | 0.0535 (6) | |
H3A | 0.2794 | 0.5650 | 0.2652 | 0.064* | |
C4 | 0.0000 | 0.5000 | −0.1006 (7) | 0.0512 (7) | |
H4A | 0.0594 | 0.5590 | −0.2315 | 0.061* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
N1 | 0.0609 (10) | 0.0453 (10) | 0.0966 (15) | 0.0108 (8) | 0.0019 (10) | 0.0085 (9) |
N2 | 0.0378 (7) | 0.0373 (8) | 0.0544 (8) | 0.0037 (6) | 0.0042 (6) | −0.0022 (7) |
C1 | 0.0563 (11) | 0.0360 (9) | 0.0820 (13) | −0.0020 (8) | 0.0003 (12) | −0.0038 (9) |
C2 | 0.0429 (9) | 0.0606 (11) | 0.0723 (12) | 0.0085 (8) | −0.0020 (10) | 0.0009 (11) |
C3 | 0.0416 (9) | 0.0442 (10) | 0.0747 (11) | −0.0034 (7) | −0.0026 (10) | −0.0022 (9) |
C4 | 0.0489 (13) | 0.0548 (14) | 0.0500 (12) | 0.0096 (11) | 0.000 | 0.000 |
Geometric parameters (Å, º) top
N1—C1 | 1.295 (3) | C2—C3 | 1.342 (2) |
N1—C2 | 1.367 (2) | C2—H2A | 0.9300 |
N2—C1 | 1.351 (2) | C3—H3A | 0.9300 |
N2—C3 | 1.375 (2) | C4—N2i | 1.444 (2) |
N2—C4 | 1.444 (2) | C4—H4A | 0.9700 |
C1—H1A | 0.9300 | C4—H4Ai | 0.9700 |
| | | |
C1—N1—C2 | 104.94 (16) | C3—C2—H2A | 124.6 |
C1—N2—C3 | 106.04 (16) | N1—C2—H2A | 124.6 |
C1—N2—C4 | 126.83 (14) | C2—C3—N2 | 105.71 (14) |
C3—N2—C4 | 127.13 (13) | C2—C3—H3A | 127.1 |
N1—C1—N2 | 112.50 (18) | N2—C3—H3A | 127.1 |
N1—C1—H1A | 123.8 | N2i—C4—N2 | 112.1 (2) |
N2—C1—H1A | 123.8 | N2i—C4—H4A | 109.2 |
C3—C2—N1 | 110.81 (19) | N2—C4—H4A | 109.2 |
| | | |
C2—N1—C1—N2 | −0.1 (2) | C1—N2—C3—C2 | −0.3 (2) |
C3—N2—C1—N1 | 0.3 (2) | C4—N2—C3—C2 | 179.8 (2) |
C4—N2—C1—N1 | −179.90 (19) | C1—N2—C4—N2i | 106.63 (19) |
C1—N1—C2—C3 | −0.1 (2) | C3—N2—C4—N2i | −73.57 (15) |
N1—C2—C3—N2 | 0.3 (2) | | |
Symmetry code: (i) −x, −y+1, z. |
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