Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S1600536807032497/cv2266sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S1600536807032497/cv2266Isup2.hkl |
CCDC reference: 657707
Key indicators
- Single-crystal X-ray study
- T = 173 K
- Mean (C-C) = 0.011 Å
- R factor = 0.052
- wR factor = 0.148
- Data-to-parameter ratio = 17.4
checkCIF/PLATON results
No syntax errors found
Alert level C ABSTM02_ALERT_3_C The ratio of expected to reported Tmax/Tmin(RR) is > 1.10 Tmin and Tmax reported: 0.159 0.272 Tmin and Tmax expected: 0.071 0.172 RR = 1.411 Please check that your absorption correction is appropriate. STRVA01_ALERT_4_C Flack test results are ambiguous. From the CIF: _refine_ls_abs_structure_Flack 0.592 From the CIF: _refine_ls_abs_structure_Flack_su 0.016 PLAT060_ALERT_3_C Ratio Tmax/Tmin (Exp-to-Rep) (too) Large ....... 1.48 PLAT062_ALERT_4_C Rescale T(min) & T(max) by ..................... 0.63 PLAT094_ALERT_2_C Ratio of Maximum / Minimum Residual Density .... 2.68 PLAT125_ALERT_4_C No _symmetry_space_group_name_Hall Given ....... ? PLAT318_ALERT_2_C Check Hybridisation of N2 in Main Residue . ? PLAT341_ALERT_3_C Low Bond Precision on C-C Bonds (x 1000) Ang ... 11 PLAT790_ALERT_4_C Centre of Gravity not Within Unit Cell: Resd. # 1 C9 H10 Br2 N2 O3
Alert level G ABSTM02_ALERT_3_G When printed, the submitted absorption T values will be replaced by the scaled T values. Since the ratio of scaled T's is identical to the ratio of reported T values, the scaling does not imply a change to the absorption corrections used in the study. Ratio of Tmax expected/reported 0.633 Tmax scaled 0.172 Tmin scaled 0.101 REFLT03_ALERT_4_G Please check that the estimate of the number of Friedel pairs is correct. If it is not, please give the correct count in the _publ_section_exptl_refinement section of the submitted CIF. From the CIF: _diffrn_reflns_theta_max 26.95 From the CIF: _reflns_number_total 5111 Count of symmetry unique reflns 2658 Completeness (_total/calc) 192.29% TEST3: Check Friedels for noncentro structure Estimate of Friedel pairs measured 2453 Fraction of Friedel pairs measured 0.923 Are heavy atom types Z>Si present yes PLAT033_ALERT_2_G Flack Parameter Value Deviates 2 * su from zero. 0.59 PLAT792_ALERT_1_G Check the Absolute Configuration of C6 = ... R PLAT792_ALERT_1_G Check the Absolute Configuration of C15 = ... S PLAT860_ALERT_3_G Note: Number of Least-Squares Restraints ....... 1
0 ALERT level A = In general: serious problem 0 ALERT level B = Potentially serious problem 9 ALERT level C = Check and explain 6 ALERT level G = General alerts; check 2 ALERT type 1 CIF construction/syntax error, inconsistent or missing data 3 ALERT type 2 Indicator that the structure model may be wrong or deficient 5 ALERT type 3 Indicator that the structure quality may be low 5 ALERT type 4 Improvement, methodology, query or suggestion 0 ALERT type 5 Informative message, check
For related literature, see: Banwell et al. (2006); Bernstein et al. (1995); Faulkner (2002); Marsh et al. (1998); Sosa et al. (2002); Zeng (2006); Zeng et al. (2007).
The hydrochloric acid salt of DL-methyl 2-aminopropionate (0.70 g, 5 mmol) and 4,5-dibromo-2-trichloroacetylpyrrole (1.85 g, 5 mmol) were added to 12 ml of acetonitrile, followed by the dropwise addition of triethylamine (1.4 ml). The mixture was stirred at room temperature for 8 h, and then poured into water. After filtration, the precipitate was collected as a pale yellow solid. The impure product was dissolved in ethanol at room temperature. Colourless crystals suitable for X-ray analysis (m. p. 485 K, in 81.4% yield) grew over a period of several days when the solution was exposed to air. CH&N elemental analysis. Calc. for C9H10Br2N2O3: C 30.54, H 2.85, N 7.91%; found: C 30.27, H 2.69, N 8.07%.
The H atoms were positioned geometrically [C—H = 1.00 Å for CH, 0.98 Å for CH3, C—H = 0.95 Å for CH(aromatic), and N—H = 0.88 Å] and refined using a riding model, with Uiso = 1.2Ueq (1.5Ueq for the methyl group) of the parent atom. The highest residual peak [2.35 e Å-3] is situated 0.97 Å at Br4 atom.
Because of racemic twinning, the TWIN and BASF instructions were used in the final refinement.
Pyrrole derivatives are well known in many marine organisms (Faulkner, 2002), some show important bioactivities, such as antitumor activity (Banwell et al., 2006) and protein kinase inhibiting activity (Sosa et al., 2002). This is the reason why they have attracted our interest. This study follows our previous studies on (S)-Methyl 2-(4,5-dibromo-1H-pyrrole-2-carboxamido)-3-methylbutanoate (Zeng, 2006) and Methyl 3-(3,4,5-tribromo-1H-pyrrol-2-ylcarboxamido)propionate (Zeng et al., 2007).
In the crystal structure, the two independent molecules are disposed over a false center of inversion (Fig. 1); this feature has been noted in compounds beloning to the Pna21 group (Marsh et al., 1998). These two molecules being R– and S-enantiomers are linked through N1—H···O4 and N3—H···O1 hydrogen bonds (Table 1) to form pseudo-centrosymmetric dimer (also shown in Fig. 1), which graph-set analysis describes as an R22(10) motif (Bernstein et al., 1995). At the same time, the weaker N2—H···O5 and N4—H···O2 hydrogen bonds link the dimers into two-dimensional layers parallel to ab-plane (Fig. 2).
For related literature, see: Banwell et al. (2006); Bernstein et al. (1995); Faulkner (2002); Marsh et al. (1998); Sosa et al. (2002); Zeng (2006); Zeng et al. (2007).
Data collection: SMART (Bruker, 1999); cell refinement: SAINT-Plus (Bruker, 1999); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: SHELXTL (Bruker, 1997); software used to prepare material for publication: SHELXTL.
C9H10Br2N2O3 | Dx = 1.964 Mg m−3 |
Mr = 354.01 | Melting point: 485 K |
Orthorhombic, Pna21 | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: P 2c -2n | Cell parameters from 5810 reflections |
a = 15.8880 (16) Å | θ = 2.6–26.8° |
b = 6.1274 (6) Å | µ = 6.77 mm−1 |
c = 24.593 (3) Å | T = 173 K |
V = 2394.2 (4) Å3 | Plate, colourless |
Z = 8 | 0.43 × 0.40 × 0.26 mm |
F(000) = 1376 |
Bruker SMART 1K CCD area-detector diffractometer | 5111 independent reflections |
Radiation source: fine-focus sealed tube | 4233 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.053 |
φ and ω scans | θmax = 27.0°, θmin = 1.7° |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | h = −20→20 |
Tmin = 0.159, Tmax = 0.272 | k = −7→7 |
18530 measured reflections | l = −30→31 |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.052 | H-atom parameters constrained |
wR(F2) = 0.148 | w = 1/[σ2(Fo2) + (0.0945P)2 + 0.3872P] where P = (Fo2 + 2Fc2)/3 |
S = 1.09 | (Δ/σ)max = 0.001 |
5111 reflections | Δρmax = 2.35 e Å−3 |
294 parameters | Δρmin = −0.88 e Å−3 |
1 restraint | Absolute structure: Flack (1983), 2453 Friedel pairs |
Primary atom site location: structure-invariant direct methods | Absolute structure parameter: 0.592 (16) |
C9H10Br2N2O3 | V = 2394.2 (4) Å3 |
Mr = 354.01 | Z = 8 |
Orthorhombic, Pna21 | Mo Kα radiation |
a = 15.8880 (16) Å | µ = 6.77 mm−1 |
b = 6.1274 (6) Å | T = 173 K |
c = 24.593 (3) Å | 0.43 × 0.40 × 0.26 mm |
Bruker SMART 1K CCD area-detector diffractometer | 5111 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | 4233 reflections with I > 2σ(I) |
Tmin = 0.159, Tmax = 0.272 | Rint = 0.053 |
18530 measured reflections |
R[F2 > 2σ(F2)] = 0.052 | H-atom parameters constrained |
wR(F2) = 0.148 | Δρmax = 2.35 e Å−3 |
S = 1.09 | Δρmin = −0.88 e Å−3 |
5111 reflections | Absolute structure: Flack (1983), 2453 Friedel pairs |
294 parameters | Absolute structure parameter: 0.592 (16) |
1 restraint |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Br4 | 0.47977 (6) | 0.33319 (16) | 0.71923 (3) | 0.0387 (2) | |
Br3 | 0.36898 (6) | −0.12861 (15) | 0.66069 (4) | 0.0396 (2) | |
C12 | 0.4929 (5) | 0.3982 (13) | 0.6001 (4) | 0.0233 (16) | |
H12 | 0.5234 | 0.5315 | 0.6017 | 0.028* | |
O4 | 0.4423 (3) | 0.2217 (9) | 0.4619 (2) | 0.0237 (12) | |
C17 | 0.5665 (5) | 0.7947 (12) | 0.4204 (4) | 0.0285 (18) | |
H17A | 0.6201 | 0.8080 | 0.4399 | 0.043* | |
H17B | 0.5255 | 0.8965 | 0.4360 | 0.043* | |
H17C | 0.5751 | 0.8293 | 0.3819 | 0.043* | |
C14 | 0.4777 (4) | 0.3376 (12) | 0.4973 (3) | 0.0180 (15) | |
N4 | 0.5247 (4) | 0.5104 (10) | 0.4832 (3) | 0.0191 (13) | |
H4 | 0.5496 | 0.5890 | 0.5085 | 0.023* | |
C10 | 0.4226 (5) | 0.0981 (13) | 0.6243 (3) | 0.0211 (15) | |
C15 | 0.5345 (4) | 0.5679 (13) | 0.4257 (3) | 0.0205 (15) | |
H15 | 0.4781 | 0.5591 | 0.4077 | 0.025* | |
C11 | 0.4642 (5) | 0.2747 (13) | 0.6445 (3) | 0.0251 (17) | |
N3 | 0.4262 (4) | 0.1053 (10) | 0.5702 (3) | 0.0199 (13) | |
H3A | 0.4048 | 0.0075 | 0.5480 | 0.024* | |
C13 | 0.4689 (4) | 0.2907 (12) | 0.5548 (3) | 0.0187 (15) | |
O5 | 0.6450 (4) | 0.2933 (9) | 0.4192 (2) | 0.0271 (12) | |
O6 | 0.5853 (4) | 0.4267 (9) | 0.3443 (2) | 0.0275 (12) | |
C16 | 0.5944 (4) | 0.4079 (11) | 0.3973 (3) | 0.0172 (14) | |
C18 | 0.6420 (6) | 0.2931 (16) | 0.3116 (4) | 0.036 (2) | |
H18A | 0.6316 | 0.1385 | 0.3193 | 0.054* | |
H18B | 0.7004 | 0.3292 | 0.3207 | 0.054* | |
H18C | 0.6320 | 0.3219 | 0.2730 | 0.054* | |
Br1 | 0.40261 (6) | 0.14472 (15) | 0.32146 (4) | 0.0364 (2) | |
Br2 | 0.27815 (6) | −0.30292 (15) | 0.26376 (3) | 0.0382 (2) | |
C3 | 0.2788 (5) | −0.3833 (13) | 0.3805 (3) | 0.0227 (16) | |
H3 | 0.2475 | −0.5152 | 0.3789 | 0.027* | |
C5 | 0.3026 (4) | −0.3344 (11) | 0.4843 (3) | 0.0162 (14) | |
C2 | 0.3038 (5) | −0.2547 (14) | 0.3366 (3) | 0.0251 (17) | |
N2 | 0.2550 (4) | −0.5115 (10) | 0.4979 (2) | 0.0210 (13) | |
H2 | 0.2306 | −0.5897 | 0.4723 | 0.025* | |
C6 | 0.2446 (5) | −0.5711 (12) | 0.5552 (3) | 0.0203 (15) | |
H6 | 0.3004 | −0.5624 | 0.5740 | 0.024* | |
N1 | 0.3516 (4) | −0.0987 (10) | 0.4115 (2) | 0.0184 (12) | |
H1 | 0.3768 | −0.0064 | 0.4335 | 0.022* | |
C4 | 0.3084 (5) | −0.2816 (13) | 0.4269 (3) | 0.0202 (15) | |
O1 | 0.3378 (3) | −0.2291 (9) | 0.5192 (2) | 0.0252 (12) | |
O2 | 0.1322 (4) | −0.2991 (9) | 0.5614 (2) | 0.0269 (12) | |
C7 | 0.1833 (5) | −0.4166 (12) | 0.5826 (3) | 0.0202 (15) | |
O3 | 0.1928 (4) | −0.4370 (10) | 0.6358 (2) | 0.0306 (13) | |
C9 | 0.1369 (6) | −0.3109 (15) | 0.6690 (3) | 0.033 (2) | |
H9A | 0.1523 | −0.1564 | 0.6667 | 0.049* | |
H9B | 0.1411 | −0.3600 | 0.7068 | 0.049* | |
H9C | 0.0790 | −0.3302 | 0.6561 | 0.049* | |
C1 | 0.3490 (5) | −0.0837 (13) | 0.3566 (3) | 0.0223 (15) | |
C8 | 0.2118 (6) | −0.8018 (13) | 0.5586 (4) | 0.0299 (19) | |
H8A | 0.1564 | −0.8097 | 0.5412 | 0.045* | |
H8B | 0.2068 | −0.8449 | 0.5968 | 0.045* | |
H8C | 0.2508 | −0.9004 | 0.5400 | 0.045* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Br4 | 0.0490 (5) | 0.0491 (5) | 0.0180 (4) | −0.0051 (4) | −0.0040 (4) | −0.0074 (4) |
Br3 | 0.0530 (6) | 0.0371 (5) | 0.0288 (5) | −0.0080 (4) | 0.0053 (4) | 0.0061 (4) |
C12 | 0.020 (3) | 0.023 (4) | 0.027 (4) | −0.001 (3) | 0.003 (3) | −0.004 (3) |
O4 | 0.031 (3) | 0.022 (3) | 0.018 (3) | −0.009 (2) | −0.003 (2) | −0.002 (2) |
C17 | 0.036 (4) | 0.021 (4) | 0.028 (4) | 0.001 (3) | −0.003 (3) | 0.000 (3) |
C14 | 0.018 (3) | 0.018 (3) | 0.018 (4) | 0.006 (3) | 0.003 (3) | −0.001 (3) |
N4 | 0.018 (3) | 0.018 (3) | 0.022 (3) | −0.003 (2) | 0.004 (2) | −0.005 (2) |
C10 | 0.023 (4) | 0.026 (4) | 0.014 (4) | 0.002 (3) | 0.001 (3) | 0.003 (3) |
C15 | 0.018 (3) | 0.025 (4) | 0.019 (4) | 0.004 (3) | 0.003 (3) | 0.000 (3) |
C11 | 0.025 (4) | 0.034 (4) | 0.016 (4) | 0.000 (3) | −0.002 (3) | −0.004 (3) |
N3 | 0.017 (3) | 0.024 (3) | 0.019 (3) | −0.002 (2) | 0.001 (3) | −0.001 (3) |
C13 | 0.013 (3) | 0.016 (4) | 0.027 (4) | 0.006 (3) | 0.004 (3) | 0.001 (3) |
O5 | 0.033 (3) | 0.025 (3) | 0.023 (3) | 0.010 (2) | 0.001 (2) | 0.004 (2) |
O6 | 0.037 (3) | 0.031 (3) | 0.015 (3) | 0.016 (3) | 0.002 (2) | 0.000 (2) |
C16 | 0.021 (3) | 0.015 (3) | 0.016 (3) | 0.001 (3) | 0.002 (3) | −0.001 (3) |
C18 | 0.043 (5) | 0.047 (5) | 0.018 (5) | 0.021 (4) | 0.011 (4) | −0.001 (4) |
Br1 | 0.0495 (5) | 0.0368 (5) | 0.0231 (4) | −0.0152 (4) | −0.0014 (4) | 0.0042 (4) |
Br2 | 0.0462 (5) | 0.0514 (5) | 0.0172 (4) | −0.0163 (4) | −0.0014 (4) | −0.0087 (4) |
C3 | 0.025 (4) | 0.021 (4) | 0.022 (4) | −0.010 (3) | 0.001 (3) | −0.007 (3) |
C5 | 0.015 (3) | 0.013 (3) | 0.021 (4) | −0.001 (3) | 0.004 (3) | −0.004 (3) |
C2 | 0.029 (4) | 0.030 (4) | 0.016 (4) | −0.005 (4) | 0.000 (3) | −0.010 (3) |
N2 | 0.028 (3) | 0.017 (3) | 0.018 (3) | −0.005 (2) | 0.004 (3) | −0.005 (2) |
C6 | 0.020 (3) | 0.015 (4) | 0.025 (4) | −0.001 (3) | −0.001 (3) | −0.002 (3) |
N1 | 0.021 (3) | 0.019 (3) | 0.015 (3) | −0.005 (2) | −0.004 (2) | −0.002 (2) |
C4 | 0.027 (4) | 0.027 (4) | 0.007 (3) | −0.007 (3) | 0.003 (3) | −0.004 (3) |
O1 | 0.032 (3) | 0.022 (3) | 0.021 (3) | −0.010 (2) | −0.002 (2) | −0.002 (2) |
O2 | 0.036 (3) | 0.026 (3) | 0.019 (3) | 0.008 (2) | 0.000 (2) | 0.003 (2) |
C7 | 0.025 (4) | 0.016 (3) | 0.020 (4) | −0.004 (3) | 0.002 (3) | 0.002 (3) |
O3 | 0.041 (3) | 0.034 (3) | 0.016 (3) | 0.013 (3) | 0.002 (2) | 0.010 (2) |
C9 | 0.043 (5) | 0.042 (5) | 0.013 (4) | 0.013 (4) | 0.011 (4) | 0.001 (3) |
C1 | 0.025 (4) | 0.028 (4) | 0.014 (4) | −0.006 (3) | 0.002 (3) | 0.001 (3) |
C8 | 0.037 (5) | 0.018 (4) | 0.035 (5) | −0.003 (3) | 0.001 (4) | 0.008 (3) |
Br4—C11 | 1.889 (8) | Br1—C1 | 1.853 (7) |
Br3—C10 | 1.859 (8) | Br2—C2 | 1.861 (8) |
C12—C13 | 1.350 (12) | C3—C4 | 1.382 (10) |
C12—C11 | 1.404 (12) | C3—C2 | 1.394 (12) |
C12—H12 | 0.9500 | C3—H3 | 0.9500 |
O4—C14 | 1.256 (9) | C5—O1 | 1.210 (9) |
C17—C15 | 1.486 (11) | C5—N2 | 1.364 (9) |
C17—H17A | 0.9800 | C5—C4 | 1.451 (10) |
C17—H17B | 0.9800 | C2—C1 | 1.362 (11) |
C17—H17C | 0.9800 | N2—C6 | 1.467 (10) |
C14—N4 | 1.341 (9) | N2—H2 | 0.8800 |
C14—C13 | 1.450 (11) | C6—C8 | 1.509 (10) |
N4—C15 | 1.468 (10) | C6—C7 | 1.516 (10) |
N4—H4 | 0.8800 | C6—H6 | 1.0000 |
C10—N3 | 1.332 (10) | N1—C1 | 1.352 (10) |
C10—C11 | 1.362 (11) | N1—C4 | 1.368 (10) |
C15—C16 | 1.534 (10) | N1—H1 | 0.8800 |
C15—H15 | 1.0000 | O2—C7 | 1.203 (9) |
N3—C13 | 1.376 (10) | C7—O3 | 1.322 (9) |
N3—H3A | 0.8800 | O3—C9 | 1.433 (10) |
O5—C16 | 1.196 (9) | C9—H9A | 0.9800 |
O6—C16 | 1.317 (9) | C9—H9B | 0.9800 |
O6—C18 | 1.458 (9) | C9—H9C | 0.9800 |
C18—H18A | 0.9800 | C8—H8A | 0.9800 |
C18—H18B | 0.9800 | C8—H8B | 0.9800 |
C18—H18C | 0.9800 | C8—H8C | 0.9800 |
C13—C12—C11 | 106.6 (7) | C4—C3—C2 | 106.7 (7) |
C13—C12—H12 | 126.7 | C4—C3—H3 | 126.6 |
C11—C12—H12 | 126.7 | C2—C3—H3 | 126.6 |
C15—C17—H17A | 109.5 | O1—C5—N2 | 120.4 (7) |
C15—C17—H17B | 109.5 | O1—C5—C4 | 122.8 (7) |
H17A—C17—H17B | 109.5 | N2—C5—C4 | 116.8 (6) |
C15—C17—H17C | 109.5 | C1—C2—C3 | 107.8 (7) |
H17A—C17—H17C | 109.5 | C1—C2—Br2 | 125.8 (6) |
H17B—C17—H17C | 109.5 | C3—C2—Br2 | 126.4 (6) |
O4—C14—N4 | 121.1 (7) | C5—N2—C6 | 119.7 (6) |
O4—C14—C13 | 121.4 (7) | C5—N2—H2 | 120.1 |
N4—C14—C13 | 117.5 (7) | C6—N2—H2 | 120.1 |
C14—N4—C15 | 119.9 (6) | N2—C6—C8 | 109.0 (6) |
C14—N4—H4 | 120.1 | N2—C6—C7 | 110.1 (6) |
C15—N4—H4 | 120.1 | C8—C6—C7 | 109.8 (6) |
N3—C10—C11 | 108.5 (7) | N2—C6—H6 | 109.3 |
N3—C10—Br3 | 121.7 (6) | C8—C6—H6 | 109.3 |
C11—C10—Br3 | 129.9 (6) | C7—C6—H6 | 109.3 |
N4—C15—C17 | 110.2 (7) | C1—N1—C4 | 108.5 (6) |
N4—C15—C16 | 110.5 (6) | C1—N1—H1 | 125.8 |
C17—C15—C16 | 110.2 (6) | C4—N1—H1 | 125.8 |
N4—C15—H15 | 108.6 | N1—C4—C3 | 108.1 (7) |
C17—C15—H15 | 108.6 | N1—C4—C5 | 119.0 (6) |
C16—C15—H15 | 108.6 | C3—C4—C5 | 132.9 (7) |
C10—C11—C12 | 107.6 (7) | O2—C7—O3 | 124.1 (7) |
C10—C11—Br4 | 124.7 (6) | O2—C7—C6 | 128.0 (7) |
C12—C11—Br4 | 127.7 (6) | O3—C7—C6 | 107.9 (6) |
C10—N3—C13 | 108.8 (7) | C7—O3—C9 | 116.2 (6) |
C10—N3—H3A | 125.6 | O3—C9—H9A | 109.5 |
C13—N3—H3A | 125.6 | O3—C9—H9B | 109.5 |
C12—C13—N3 | 108.4 (7) | H9A—C9—H9B | 109.5 |
C12—C13—C14 | 132.9 (7) | O3—C9—H9C | 109.5 |
N3—C13—C14 | 118.6 (7) | H9A—C9—H9C | 109.5 |
C16—O6—C18 | 115.4 (6) | H9B—C9—H9C | 109.5 |
O5—C16—O6 | 124.8 (7) | N1—C1—C2 | 108.9 (7) |
O5—C16—C15 | 126.0 (7) | N1—C1—Br1 | 120.2 (6) |
O6—C16—C15 | 109.1 (6) | C2—C1—Br1 | 130.9 (6) |
O6—C18—H18A | 109.5 | C6—C8—H8A | 109.5 |
O6—C18—H18B | 109.5 | C6—C8—H8B | 109.5 |
H18A—C18—H18B | 109.5 | H8A—C8—H8B | 109.5 |
O6—C18—H18C | 109.5 | C6—C8—H8C | 109.5 |
H18A—C18—H18C | 109.5 | H8A—C8—H8C | 109.5 |
H18B—C18—H18C | 109.5 | H8B—C8—H8C | 109.5 |
O4—C14—N4—C15 | 0.8 (10) | C4—C3—C2—C1 | 1.4 (9) |
C13—C14—N4—C15 | −178.8 (6) | C4—C3—C2—Br2 | −177.2 (6) |
C14—N4—C15—C17 | 163.4 (6) | O1—C5—N2—C6 | 1.6 (11) |
C14—N4—C15—C16 | −74.6 (8) | C4—C5—N2—C6 | −178.5 (7) |
N3—C10—C11—C12 | 1.4 (9) | C5—N2—C6—C8 | −163.9 (7) |
Br3—C10—C11—C12 | −179.7 (6) | C5—N2—C6—C7 | 75.7 (8) |
N3—C10—C11—Br4 | −178.0 (6) | C1—N1—C4—C3 | 0.4 (9) |
Br3—C10—C11—Br4 | 0.9 (11) | C1—N1—C4—C5 | 179.6 (7) |
C13—C12—C11—C10 | −0.9 (9) | C2—C3—C4—N1 | −1.1 (9) |
C13—C12—C11—Br4 | 178.5 (6) | C2—C3—C4—C5 | 179.8 (9) |
C11—C10—N3—C13 | −1.4 (9) | O1—C5—C4—N1 | −3.6 (12) |
Br3—C10—N3—C13 | 179.6 (5) | N2—C5—C4—N1 | 176.5 (6) |
C11—C12—C13—N3 | 0.1 (8) | O1—C5—C4—C3 | 175.4 (8) |
C11—C12—C13—C14 | 178.1 (8) | N2—C5—C4—C3 | −4.5 (13) |
C10—N3—C13—C12 | 0.8 (8) | N2—C6—C7—O2 | 18.8 (11) |
C10—N3—C13—C14 | −177.6 (6) | C8—C6—C7—O2 | −101.1 (10) |
O4—C14—C13—C12 | −172.8 (8) | N2—C6—C7—O3 | −163.4 (6) |
N4—C14—C13—C12 | 6.9 (12) | C8—C6—C7—O3 | 76.6 (8) |
O4—C14—C13—N3 | 5.1 (10) | O2—C7—O3—C9 | 0.9 (12) |
N4—C14—C13—N3 | −175.2 (6) | C6—C7—O3—C9 | −177.0 (7) |
C18—O6—C16—O5 | 0.7 (12) | C4—N1—C1—C2 | 0.5 (9) |
C18—O6—C16—C15 | 176.5 (7) | C4—N1—C1—Br1 | −179.3 (5) |
N4—C15—C16—O5 | −20.3 (11) | C3—C2—C1—N1 | −1.2 (10) |
C17—C15—C16—O5 | 101.7 (9) | Br2—C2—C1—N1 | 177.4 (6) |
N4—C15—C16—O6 | 163.9 (6) | C3—C2—C1—Br1 | 178.5 (6) |
C17—C15—C16—O6 | −74.1 (8) | Br2—C2—C1—Br1 | −2.9 (12) |
D—H···A | D—H | H···A | D···A | D—H···A |
N4—H4···O2i | 0.88 | 2.25 | 3.122 (8) | 169 |
N3—H3A···O1 | 0.88 | 1.93 | 2.784 (8) | 162 |
N2—H2···O5ii | 0.88 | 2.26 | 3.127 (8) | 168 |
N1—H1···O4 | 0.88 | 1.88 | 2.734 (8) | 164 |
Symmetry codes: (i) x+1/2, −y+1/2, z; (ii) x−1/2, −y−1/2, z. |
Experimental details
Crystal data | |
Chemical formula | C9H10Br2N2O3 |
Mr | 354.01 |
Crystal system, space group | Orthorhombic, Pna21 |
Temperature (K) | 173 |
a, b, c (Å) | 15.8880 (16), 6.1274 (6), 24.593 (3) |
V (Å3) | 2394.2 (4) |
Z | 8 |
Radiation type | Mo Kα |
µ (mm−1) | 6.77 |
Crystal size (mm) | 0.43 × 0.40 × 0.26 |
Data collection | |
Diffractometer | Bruker SMART 1K CCD area-detector |
Absorption correction | Multi-scan (SADABS; Sheldrick, 1996) |
Tmin, Tmax | 0.159, 0.272 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 18530, 5111, 4233 |
Rint | 0.053 |
(sin θ/λ)max (Å−1) | 0.638 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.052, 0.148, 1.09 |
No. of reflections | 5111 |
No. of parameters | 294 |
No. of restraints | 1 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 2.35, −0.88 |
Absolute structure | Flack (1983), 2453 Friedel pairs |
Absolute structure parameter | 0.592 (16) |
Computer programs: SMART (Bruker, 1999), SAINT-Plus (Bruker, 1999), SAINT-Plus, SHELXS97 (Sheldrick, 1997), SHELXL97 (Sheldrick, 1997), SHELXTL (Bruker, 1997), SHELXTL.
D—H···A | D—H | H···A | D···A | D—H···A |
N4—H4···O2i | 0.88 | 2.25 | 3.122 (8) | 169 |
N3—H3A···O1 | 0.88 | 1.93 | 2.784 (8) | 162 |
N2—H2···O5ii | 0.88 | 2.26 | 3.127 (8) | 168 |
N1—H1···O4 | 0.88 | 1.88 | 2.734 (8) | 164 |
Symmetry codes: (i) x+1/2, −y+1/2, z; (ii) x−1/2, −y−1/2, z. |
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Pyrrole derivatives are well known in many marine organisms (Faulkner, 2002), some show important bioactivities, such as antitumor activity (Banwell et al., 2006) and protein kinase inhibiting activity (Sosa et al., 2002). This is the reason why they have attracted our interest. This study follows our previous studies on (S)-Methyl 2-(4,5-dibromo-1H-pyrrole-2-carboxamido)-3-methylbutanoate (Zeng, 2006) and Methyl 3-(3,4,5-tribromo-1H-pyrrol-2-ylcarboxamido)propionate (Zeng et al., 2007).
In the crystal structure, the two independent molecules are disposed over a false center of inversion (Fig. 1); this feature has been noted in compounds beloning to the Pna21 group (Marsh et al., 1998). These two molecules being R– and S-enantiomers are linked through N1—H···O4 and N3—H···O1 hydrogen bonds (Table 1) to form pseudo-centrosymmetric dimer (also shown in Fig. 1), which graph-set analysis describes as an R22(10) motif (Bernstein et al., 1995). At the same time, the weaker N2—H···O5 and N4—H···O2 hydrogen bonds link the dimers into two-dimensional layers parallel to ab-plane (Fig. 2).