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The DNA methyltransferase M.BseC1 from B. stearothermophilus methylates the N6 atom of the 3′ adenine in the sequence 5′-ATCGAT-3′. The 579-residue protein has been isolated and crystallized using seeding and microdialysis techniques. The crystals are monoclinic, space group P21 with cell dimensions a = 53.7, b = 85.7, c = 151.8 Å and β = 95.1°, two molecules in the asymmetric unit and diffract to at least 2.5 Å resolution.