Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S1600536806011901/is2017sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S1600536806011901/is2017Isup2.hkl |
CCDC reference: 608421
Key indicators
- Single-crystal X-ray study
- T = 100 K
- Mean (C-C) = 0.004 Å
- R factor = 0.039
- wR factor = 0.060
- Data-to-parameter ratio = 16.7
checkCIF/PLATON results
No syntax errors found
Alert level C PLAT029_ALERT_3_C _diffrn_measured_fraction_theta_full Low ....... 0.98
Alert level G REFLT03_ALERT_1_G ALERT: Expected hkl max differ from CIF values From the CIF: _diffrn_reflns_theta_max 28.50 From the CIF: _reflns_number_total 2899 From the CIF: _diffrn_reflns_limit_ max hkl 37. 14. 19. From the CIF: _diffrn_reflns_limit_ min hkl -37. -14. -19. TEST1: Expected hkl limits for theta max Calculated maximum hkl 39. 15. 20. Calculated minimum hkl -39. -15. -20. REFLT03_ALERT_4_G Please check that the estimate of the number of Friedel pairs is correct. If it is not, please give the correct count in the _publ_section_exptl_refinement section of the submitted CIF. From the CIF: _diffrn_reflns_theta_max 28.50 From the CIF: _reflns_number_total 2899 Count of symmetry unique reflns 1657 Completeness (_total/calc) 174.95% TEST3: Check Friedels for noncentro structure Estimate of Friedel pairs measured 1242 Fraction of Friedel pairs measured 0.750 Are heavy atom types Z>Si present yes
0 ALERT level A = In general: serious problem 0 ALERT level B = Potentially serious problem 1 ALERT level C = Check and explain 2 ALERT level G = General alerts; check 1 ALERT type 1 CIF construction/syntax error, inconsistent or missing data 0 ALERT type 2 Indicator that the structure model may be wrong or deficient 1 ALERT type 3 Indicator that the structure quality may be low 1 ALERT type 4 Improvement, methodology, query or suggestion
Data collection: CrysAlis CCD (Oxford Diffraction, 2003); cell refinement: CrysAlis RED (Oxford Diffraction, 2003); data reduction: CrysAlis RED; program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: PLATON (Spek, 2003) and Mercury (Version 1.2.1; Bruno et al., 2002); software used to prepare material for publication: SHELXL97.
[Co(C9H8NO3)2(C3H4N2)2] | F(000) = 2280 |
Mr = 551.42 | Dx = 1.452 Mg m−3 |
Orthorhombic, Fdd2 | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: F 2 -2d | Cell parameters from 6391 reflections |
a = 29.245 (11) Å | θ = 2–27° |
b = 11.540 (5) Å | µ = 0.73 mm−1 |
c = 14.945 (6) Å | T = 100 K |
V = 5044 (4) Å3 | Tetrahedron, violet–blue |
Z = 8 | 0.15 × 0.15 × 0.14 mm |
Kuma KM-4-CCD κ-geometry diffractometer | 2899 independent reflections |
Radiation source: fine-focus sealed tube | 2212 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.061 |
ω scans | θmax = 28.5°, θmin = 3.1° |
Absorption correction: analytical (CrysAlis RED; Oxford Diffraction, 2003) | h = −37→37 |
Tmin = 0.890, Tmax = 0.927 | k = −14→14 |
8319 measured reflections | l = −19→19 |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.039 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.061 | w = 1/[σ2(Fo2) + (0.014P)2] where P = (Fo2 + 2Fc2)/3 |
S = 1.01 | (Δ/σ)max = 0.001 |
2899 reflections | Δρmax = 0.47 e Å−3 |
174 parameters | Δρmin = −0.45 e Å−3 |
1 restraint | Absolute structure: Flack (1983), 1325 Friedel pairs |
Primary atom site location: structure-invariant direct methods | Absolute structure parameter: −0.004 (14) |
Experimental. Safety note: the perchlorates are potentially explosive. Although we have experienced no accidents so far, all compounds containing perchlorate should be handled with care and in small amounts. Spectroscopic analysis: IR (KBr pellets, cm-1): 3301, 3137, 3064, 2944, 2868, 1634, 1605, 1540, 1490, 1419, 1401, 1297, 1257, 1072, 1002, 948, 931, 839, 728,699, 58, 618; UV-VIS (reflectance mode, cm-1): 7780, 8660, 18330, 19450. |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Co | 0.7500 | 0.7500 | 0.50000 (3) | 0.01862 (14) | |
O1 | 0.69301 (5) | 0.76707 (16) | 0.56648 (12) | 0.0227 (5) | |
O2 | 0.70744 (7) | 0.61589 (17) | 0.65493 (14) | 0.0275 (5) | |
N1 | 0.63176 (7) | 0.67005 (19) | 0.76317 (16) | 0.0188 (6) | |
H1 | 0.6362 (9) | 0.691 (3) | 0.8177 (19) | 0.023* | |
O3 | 0.59616 (6) | 0.54229 (17) | 0.67278 (13) | 0.0245 (5) | |
C1 | 0.68509 (9) | 0.7030 (3) | 0.63441 (18) | 0.0200 (6) | |
C2 | 0.64463 (9) | 0.7451 (2) | 0.69005 (17) | 0.0194 (6) | |
H2A | 0.6521 | 0.8224 | 0.7147 | 0.023* | |
H2B | 0.6179 | 0.7544 | 0.6500 | 0.023* | |
C3 | 0.60810 (8) | 0.5726 (2) | 0.7496 (2) | 0.0188 (6) | |
C4 | 0.59662 (9) | 0.4999 (2) | 0.82952 (18) | 0.0163 (7) | |
C5 | 0.62064 (9) | 0.5075 (2) | 0.91002 (17) | 0.0204 (6) | |
H5 | 0.6442 | 0.5635 | 0.9165 | 0.024* | |
C6 | 0.61044 (9) | 0.4342 (2) | 0.98039 (18) | 0.0247 (7) | |
H6 | 0.6271 | 0.4397 | 1.0348 | 0.030* | |
C7 | 0.57588 (9) | 0.3526 (2) | 0.97158 (19) | 0.0257 (7) | |
H7 | 0.5690 | 0.3019 | 1.0198 | 0.031* | |
C8 | 0.55147 (9) | 0.3454 (3) | 0.8923 (2) | 0.0277 (7) | |
H8 | 0.5275 | 0.2903 | 0.8864 | 0.033* | |
C9 | 0.56187 (9) | 0.4180 (2) | 0.82180 (19) | 0.0248 (7) | |
H9 | 0.5452 | 0.4120 | 0.7675 | 0.030* | |
N3 | 0.75153 (7) | 0.61080 (18) | 0.41903 (14) | 0.0177 (5) | |
C10 | 0.77519 (9) | 0.5968 (3) | 0.34294 (19) | 0.0190 (7) | |
H10 | 0.7929 | 0.6555 | 0.3150 | 0.023* | |
N2 | 0.77046 (7) | 0.4888 (2) | 0.31161 (16) | 0.0206 (5) | |
H2 | 0.7846 (8) | 0.462 (2) | 0.255 (2) | 0.025* | |
C11 | 0.74274 (9) | 0.4300 (2) | 0.36998 (18) | 0.0235 (7) | |
H11 | 0.7333 | 0.3514 | 0.3652 | 0.028* | |
C12 | 0.73127 (9) | 0.5055 (2) | 0.43604 (17) | 0.0193 (6) | |
H12 | 0.7123 | 0.4884 | 0.4859 | 0.023* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Co | 0.0206 (3) | 0.0199 (3) | 0.0153 (3) | 0.0013 (3) | 0.000 | 0.000 |
O1 | 0.0234 (10) | 0.0292 (12) | 0.0156 (11) | 0.0056 (9) | 0.0044 (9) | 0.0062 (9) |
O2 | 0.0319 (12) | 0.0268 (13) | 0.0238 (12) | 0.0114 (10) | 0.0072 (10) | 0.0110 (10) |
N1 | 0.0249 (12) | 0.0188 (13) | 0.0128 (15) | −0.0040 (10) | 0.0035 (12) | 0.0002 (11) |
O3 | 0.0321 (13) | 0.0263 (13) | 0.0152 (12) | 0.0025 (9) | −0.0010 (10) | −0.0044 (10) |
C1 | 0.0210 (15) | 0.0252 (16) | 0.0137 (15) | −0.0023 (13) | −0.0006 (13) | −0.0003 (13) |
C2 | 0.0287 (15) | 0.0167 (15) | 0.0129 (14) | −0.0005 (13) | 0.0056 (12) | 0.0044 (13) |
C3 | 0.0171 (13) | 0.0250 (16) | 0.0143 (15) | 0.0049 (12) | 0.0008 (14) | −0.0024 (15) |
C4 | 0.0170 (14) | 0.0191 (16) | 0.0127 (16) | 0.0034 (13) | 0.0013 (11) | −0.0035 (13) |
C5 | 0.0186 (14) | 0.0248 (17) | 0.0179 (16) | 0.0005 (13) | 0.0012 (12) | 0.0011 (14) |
C6 | 0.0232 (15) | 0.0288 (18) | 0.0220 (19) | 0.0007 (13) | 0.0006 (13) | 0.0026 (14) |
C7 | 0.0255 (16) | 0.0287 (18) | 0.0228 (19) | −0.0001 (13) | 0.0036 (13) | 0.0092 (13) |
C8 | 0.0212 (17) | 0.0358 (19) | 0.0262 (18) | −0.0089 (14) | 0.0025 (14) | 0.0028 (15) |
C9 | 0.0194 (16) | 0.039 (2) | 0.0157 (17) | −0.0062 (14) | −0.0011 (12) | −0.0033 (15) |
N3 | 0.0190 (12) | 0.0173 (13) | 0.0169 (13) | −0.0022 (11) | −0.0020 (11) | −0.0030 (10) |
C10 | 0.0195 (15) | 0.0195 (17) | 0.0182 (17) | 0.0001 (13) | 0.0019 (13) | −0.0025 (13) |
N2 | 0.0165 (12) | 0.0258 (15) | 0.0193 (13) | 0.0030 (11) | −0.0005 (10) | −0.0017 (13) |
C11 | 0.0257 (17) | 0.0167 (16) | 0.0281 (18) | 0.0008 (13) | −0.0067 (14) | −0.0012 (13) |
C12 | 0.0226 (14) | 0.0192 (16) | 0.0159 (15) | −0.0020 (13) | −0.0038 (11) | 0.0032 (14) |
Co—O1i | 1.950 (2) | C5—H5 | 0.9500 |
Co—O1 | 1.950 (2) | C6—C7 | 1.387 (4) |
Co—N3 | 2.012 (2) | C6—H6 | 0.9500 |
Co—N3i | 2.012 (2) | C7—C8 | 1.386 (4) |
O1—C1 | 1.277 (3) | C7—H7 | 0.9500 |
O2—C1 | 1.238 (3) | C8—C9 | 1.380 (4) |
N1—C3 | 1.336 (3) | C8—H8 | 0.9500 |
N1—C2 | 1.444 (3) | C9—H9 | 0.9500 |
N1—H1 | 0.86 (3) | N3—C10 | 1.341 (3) |
O3—C3 | 1.250 (3) | N3—C12 | 1.375 (3) |
C1—C2 | 1.526 (4) | C10—N2 | 1.339 (4) |
C2—H2A | 0.9900 | C10—H10 | 0.9500 |
C2—H2B | 0.9900 | N2—C11 | 1.371 (3) |
C3—C4 | 1.497 (4) | N2—H2 | 0.98 (3) |
C4—C9 | 1.393 (4) | C11—C12 | 1.359 (3) |
C4—C5 | 1.396 (3) | C11—H11 | 0.9500 |
C5—C6 | 1.382 (4) | C12—H12 | 0.9500 |
O1i—Co—O1 | 118.74 (11) | C5—C6—C7 | 120.0 (3) |
O1i—Co—N3 | 101.93 (8) | C5—C6—H6 | 120.0 |
O1—Co—N3 | 113.96 (8) | C7—C6—H6 | 120.0 |
O1i—Co—N3i | 113.96 (8) | C8—C7—C6 | 119.8 (3) |
O1—Co—N3i | 101.93 (8) | C8—C7—H7 | 120.1 |
N3—Co—N3i | 106.04 (12) | C6—C7—H7 | 120.1 |
C1—O1—Co | 120.11 (17) | C9—C8—C7 | 120.2 (3) |
C3—N1—C2 | 121.7 (2) | C9—C8—H8 | 119.9 |
C3—N1—H1 | 117 (2) | C7—C8—H8 | 119.9 |
C2—N1—H1 | 121 (2) | C8—C9—C4 | 120.7 (3) |
O2—C1—O1 | 124.8 (3) | C8—C9—H9 | 119.7 |
O2—C1—C2 | 122.2 (3) | C4—C9—H9 | 119.7 |
O1—C1—C2 | 113.0 (2) | C10—N3—C12 | 105.8 (2) |
N1—C2—C1 | 115.1 (2) | C10—N3—Co | 128.17 (19) |
N1—C2—H2A | 108.5 | C12—N3—Co | 125.77 (18) |
C1—C2—H2A | 108.5 | N2—C10—N3 | 110.8 (2) |
N1—C2—H2B | 108.5 | N2—C10—H10 | 124.6 |
C1—C2—H2B | 108.5 | N3—C10—H10 | 124.6 |
H2A—C2—H2B | 107.5 | C10—N2—C11 | 107.4 (2) |
O3—C3—N1 | 121.2 (3) | C10—N2—H2 | 122.8 (13) |
O3—C3—C4 | 120.9 (2) | C11—N2—H2 | 129.7 (14) |
N1—C3—C4 | 117.8 (3) | C12—C11—N2 | 106.9 (3) |
C9—C4—C5 | 118.8 (3) | C12—C11—H11 | 126.6 |
C9—C4—C3 | 118.5 (3) | N2—C11—H11 | 126.6 |
C5—C4—C3 | 122.7 (2) | C11—C12—N3 | 109.0 (2) |
C6—C5—C4 | 120.6 (3) | C11—C12—H12 | 125.5 |
C6—C5—H5 | 119.7 | N3—C12—H12 | 125.5 |
C4—C5—H5 | 119.7 | ||
O1i—Co—O1—C1 | −43.55 (18) | C3—C4—C5—C6 | −176.4 (2) |
N3—Co—O1—C1 | 76.6 (2) | C4—C5—C6—C7 | −0.4 (4) |
N3i—Co—O1—C1 | −169.7 (2) | C5—C6—C7—C8 | −0.4 (4) |
Co—O1—C1—O2 | −12.4 (4) | C6—C7—C8—C9 | 0.9 (4) |
Co—O1—C1—C2 | 167.29 (16) | C7—C8—C9—C4 | −0.6 (4) |
C3—N1—C2—C1 | −77.2 (3) | C5—C4—C9—C8 | −0.2 (4) |
O2—C1—C2—N1 | −5.5 (4) | C3—C4—C9—C8 | 177.0 (2) |
O1—C1—C2—N1 | 174.8 (2) | C12—N3—C10—N2 | 0.4 (3) |
C2—N1—C3—O3 | 0.1 (4) | Co—N3—C10—N2 | 174.87 (16) |
C2—N1—C3—C4 | 179.6 (2) | N3—C10—N2—C11 | −0.3 (3) |
O3—C3—C4—C9 | −18.5 (3) | C10—N2—C11—C12 | 0.1 (3) |
N1—C3—C4—C9 | 162.0 (2) | N2—C11—C12—N3 | 0.1 (3) |
O3—C3—C4—C5 | 158.6 (3) | C10—N3—C12—C11 | −0.3 (3) |
N1—C3—C4—C5 | −20.9 (4) | Co—N3—C12—C11 | −174.98 (17) |
C9—C4—C5—C6 | 0.7 (4) |
Symmetry code: (i) −x+3/2, −y+3/2, z. |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···O3ii | 0.86 (3) | 2.03 (3) | 2.846 (3) | 159 (3) |
N2—H2···O2iii | 0.98 (3) | 1.77 (3) | 2.713 (3) | 160 (2) |
Symmetry codes: (ii) −x+5/4, y+1/4, z+1/4; (iii) −x+3/2, −y+1, z−1/2. |
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