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In the title compound, C
23H
19ClN
2O
3S, the central pyrimidine ring is significantly puckered, assuming an intermediate conformation between an envelope and a screw-boat form. Short intermolecular C—H
O, C—H
π and π–π stacking interactions contribute to the stability of the crystal packing.
Supporting information
CCDC reference: 643043
Key indicators
- Single-crystal X-ray study
- T = 293 K
- Mean (C-C) = 0.007 Å
- R factor = 0.075
- wR factor = 0.173
- Data-to-parameter ratio = 13.3
checkCIF/PLATON results
No syntax errors found
Alert level C
PLAT029_ALERT_3_C _diffrn_measured_fraction_theta_full Low ....... 0.97
PLAT062_ALERT_4_C Rescale T(min) & T(max) by ..................... 0.99
PLAT220_ALERT_2_C Large Non-Solvent C Ueq(max)/Ueq(min) ... 3.40 Ratio
PLAT222_ALERT_3_C Large Non-Solvent H Ueq(max)/Ueq(min) ... 3.61 Ratio
PLAT230_ALERT_2_C Hirshfeld Test Diff for C3 - C4 .. 5.80 su
PLAT340_ALERT_3_C Low Bond Precision on C-C bonds (x 1000) Ang ... 7
Alert level G
PLAT199_ALERT_1_G Check the Reported _cell_measurement_temperature 293 K
PLAT200_ALERT_1_G Check the Reported _diffrn_ambient_temperature . 293 K
0 ALERT level A = In general: serious problem
0 ALERT level B = Potentially serious problem
6 ALERT level C = Check and explain
2 ALERT level G = General alerts; check
2 ALERT type 1 CIF construction/syntax error, inconsistent or missing data
2 ALERT type 2 Indicator that the structure model may be wrong or deficient
3 ALERT type 3 Indicator that the structure quality may be low
1 ALERT type 4 Improvement, methodology, query or suggestion
0 ALERT type 5 Informative message, check
Data collection: SMART (Bruker, 2000); cell refinement: SAINT (Bruker, 2000); data reduction: SAINT; program(s) used to solve structure: SIR97 (Altomare et al., 1999); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: ORTEP-3 (Farrugia, 1997) and PLATON (Spek, 2003); software used to prepare material for publication: SHELXL97 and PLATON.
Ethyl
(2
Z)-2-(2-chlorobenzylidene)-7-methyl-3-oxo-5-phenyl-2,3-dihydro-5
H-1,3- thiazolo[3,2-
a]pyrimidine-6-carboxylate
top
Crystal data top
C23H19ClN2O3S | F(000) = 912 |
Mr = 438.91 | Dx = 1.382 Mg m−3 |
Monoclinic, P21/n | Mo Kα radiation, λ = 0.71069 Å |
Hall symbol: -P 2yn | Cell parameters from 25 reflections |
a = 9.467 (1) Å | θ = 3–25° |
b = 10.337 (1) Å | µ = 0.31 mm−1 |
c = 21.736 (3) Å | T = 293 K |
β = 97.177 (2)° | Needle, yellow |
V = 2110.4 (4) Å3 | 0.35 × 0.15 × 0.1 mm |
Z = 4 | |
Data collection top
Bruker SMART CCD diffractometer | 3617 independent reflections |
Radiation source: fine-focus sealed tube | 2769 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.041 |
ω and φ scans | θmax = 25.0°, θmin = 1.9° |
Absorption correction: multi-scan (SADABS; Sheldrick, 2003) | h = −11→11 |
Tmin = 0.925, Tmax = 0.98 | k = −12→8 |
9773 measured reflections | l = −25→25 |
Refinement top
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.075 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.173 | H-atom parameters constrained |
S = 1.15 | w = 1/[σ2(Fo2) + (0.0747P)2 + 0.6488P] where P = (Fo2 + 2Fc2)/3 |
3617 reflections | (Δ/σ)max = 0.001 |
272 parameters | Δρmax = 0.33 e Å−3 |
0 restraints | Δρmin = −0.29 e Å−3 |
Special details top
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell e.s.d.'s are taken
into account individually in the estimation of e.s.d.'s in distances, angles
and torsion angles; correlations between e.s.d.'s in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s.
planes. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
S1 | 0.62888 (10) | 0.15684 (9) | 0.52774 (4) | 0.0412 (3) | |
Cl1 | 0.97330 (13) | −0.26059 (12) | 0.44844 (6) | 0.0716 (4) | |
N1 | 0.4317 (3) | 0.3314 (3) | 0.48853 (14) | 0.0436 (8) | |
N2 | 0.5059 (3) | 0.1858 (3) | 0.41545 (12) | 0.0334 (7) | |
O1 | 0.6024 (3) | 0.0237 (3) | 0.36227 (11) | 0.0488 (7) | |
O2 | 0.2153 (3) | 0.3208 (3) | 0.28136 (14) | 0.0637 (9) | |
O3 | 0.1429 (4) | 0.4879 (4) | 0.33418 (17) | 0.0877 (11) | |
C1 | 0.5075 (4) | 0.2378 (3) | 0.47306 (16) | 0.0348 (8) | |
C2 | 0.4333 (4) | 0.2515 (3) | 0.36045 (16) | 0.0381 (9) | |
H2 | 0.3823 | 0.1866 | 0.3333 | 0.046* | |
C3 | 0.3255 (4) | 0.3454 (4) | 0.38137 (18) | 0.0407 (9) | |
C4 | 0.3321 (4) | 0.3839 (3) | 0.4404 (2) | 0.0428 (10) | |
C5 | 0.5935 (3) | 0.0793 (3) | 0.40991 (16) | 0.0326 (8) | |
C6 | 0.6745 (3) | 0.0491 (3) | 0.47163 (15) | 0.0337 (8) | |
C7 | 0.2386 (4) | 0.4830 (4) | 0.4649 (2) | 0.0627 (12) | |
H7A | 0.2735 | 0.5680 | 0.4572 | 0.094* | |
H7B | 0.2391 | 0.4708 | 0.5087 | 0.094* | |
H7C | 0.1432 | 0.4740 | 0.4445 | 0.094* | |
C8 | 0.2187 (4) | 0.3949 (4) | 0.3314 (2) | 0.0562 (11) | |
C9 | 0.1151 (6) | 0.3542 (6) | 0.2281 (2) | 0.0899 (19) | |
H9A | 0.0266 | 0.3833 | 0.2417 | 0.108* | |
H9B | 0.1531 | 0.4243 | 0.2055 | 0.108* | |
C10 | 0.0886 (7) | 0.2434 (7) | 0.1882 (3) | 0.111 (2) | |
H10A | 0.0225 | 0.2665 | 0.1528 | 0.166* | |
H10B | 0.0492 | 0.1748 | 0.2105 | 0.166* | |
H10C | 0.1763 | 0.2151 | 0.1748 | 0.166* | |
C11 | 0.5395 (4) | 0.3195 (4) | 0.32505 (17) | 0.0412 (9) | |
C12 | 0.5612 (5) | 0.2826 (5) | 0.2656 (2) | 0.0611 (12) | |
H12 | 0.5106 | 0.2131 | 0.2467 | 0.073* | |
C13 | 0.6581 (6) | 0.3488 (7) | 0.2341 (2) | 0.0855 (18) | |
H13 | 0.6721 | 0.3233 | 0.1943 | 0.103* | |
C14 | 0.7324 (6) | 0.4507 (7) | 0.2613 (3) | 0.0857 (19) | |
H14 | 0.7967 | 0.4949 | 0.2400 | 0.103* | |
C15 | 0.7127 (5) | 0.4879 (6) | 0.3197 (3) | 0.0787 (15) | |
H15 | 0.7648 | 0.5566 | 0.3385 | 0.094* | |
C16 | 0.6154 (4) | 0.4239 (5) | 0.3510 (2) | 0.0570 (12) | |
H16 | 0.6008 | 0.4518 | 0.3904 | 0.068* | |
C17 | 0.7689 (4) | −0.0485 (3) | 0.47615 (17) | 0.0388 (9) | |
H17 | 0.7745 | −0.0928 | 0.4393 | 0.047* | |
C18 | 0.8635 (4) | −0.0963 (4) | 0.52900 (17) | 0.0411 (9) | |
C19 | 0.8655 (4) | −0.0493 (4) | 0.58858 (19) | 0.0551 (11) | |
H19 | 0.8022 | 0.0162 | 0.5957 | 0.066* | |
C20 | 0.9578 (5) | −0.0955 (5) | 0.6380 (2) | 0.0687 (14) | |
H20 | 0.9571 | −0.0611 | 0.6775 | 0.082* | |
C21 | 1.0506 (5) | −0.1931 (5) | 0.6276 (3) | 0.0751 (16) | |
H21 | 1.1124 | −0.2259 | 0.6605 | 0.090* | |
C22 | 1.0528 (5) | −0.2424 (5) | 0.5696 (3) | 0.0711 (15) | |
H22 | 1.1164 | −0.3080 | 0.5630 | 0.085* | |
C23 | 0.9613 (4) | −0.1951 (4) | 0.5210 (2) | 0.0514 (11) | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
S1 | 0.0424 (6) | 0.0423 (6) | 0.0373 (5) | 0.0017 (4) | −0.0007 (4) | −0.0011 (4) |
Cl1 | 0.0633 (8) | 0.0636 (8) | 0.0889 (9) | 0.0271 (6) | 0.0140 (6) | 0.0114 (7) |
N1 | 0.0385 (17) | 0.0394 (18) | 0.0535 (19) | 0.0033 (15) | 0.0082 (15) | −0.0108 (16) |
N2 | 0.0321 (16) | 0.0311 (16) | 0.0366 (16) | 0.0051 (13) | 0.0024 (12) | 0.0024 (13) |
O1 | 0.0580 (17) | 0.0485 (17) | 0.0376 (14) | 0.0198 (14) | −0.0034 (12) | −0.0076 (13) |
O2 | 0.0478 (17) | 0.074 (2) | 0.0650 (19) | 0.0200 (16) | −0.0114 (15) | 0.0135 (18) |
O3 | 0.074 (2) | 0.069 (2) | 0.115 (3) | 0.040 (2) | −0.009 (2) | 0.009 (2) |
C1 | 0.0283 (18) | 0.0306 (19) | 0.046 (2) | −0.0036 (16) | 0.0072 (16) | −0.0027 (17) |
C2 | 0.034 (2) | 0.037 (2) | 0.041 (2) | 0.0019 (17) | −0.0049 (16) | 0.0040 (17) |
C3 | 0.033 (2) | 0.033 (2) | 0.056 (2) | 0.0005 (17) | 0.0068 (17) | 0.0060 (19) |
C4 | 0.0272 (19) | 0.0251 (19) | 0.077 (3) | −0.0039 (16) | 0.0110 (19) | 0.0045 (19) |
C5 | 0.0281 (18) | 0.0316 (19) | 0.038 (2) | −0.0004 (15) | 0.0039 (15) | 0.0046 (17) |
C6 | 0.0295 (18) | 0.0315 (19) | 0.0394 (19) | −0.0059 (16) | 0.0019 (15) | 0.0043 (16) |
C7 | 0.053 (3) | 0.036 (2) | 0.101 (4) | 0.006 (2) | 0.018 (2) | −0.006 (2) |
C8 | 0.032 (2) | 0.049 (3) | 0.086 (3) | 0.007 (2) | 0.004 (2) | 0.018 (3) |
C9 | 0.069 (3) | 0.109 (5) | 0.082 (4) | 0.018 (3) | −0.030 (3) | 0.030 (4) |
C10 | 0.139 (6) | 0.112 (5) | 0.070 (4) | 0.002 (4) | −0.032 (4) | 0.016 (4) |
C11 | 0.035 (2) | 0.045 (2) | 0.043 (2) | 0.0164 (19) | 0.0028 (17) | 0.0171 (18) |
C12 | 0.063 (3) | 0.067 (3) | 0.054 (3) | 0.024 (2) | 0.013 (2) | 0.006 (2) |
C13 | 0.088 (4) | 0.110 (5) | 0.067 (3) | 0.040 (4) | 0.046 (3) | 0.034 (4) |
C14 | 0.058 (3) | 0.100 (5) | 0.105 (5) | 0.023 (3) | 0.033 (3) | 0.061 (4) |
C15 | 0.058 (3) | 0.087 (4) | 0.093 (4) | −0.010 (3) | 0.014 (3) | 0.030 (3) |
C16 | 0.040 (2) | 0.070 (3) | 0.062 (3) | 0.000 (2) | 0.012 (2) | 0.017 (2) |
C17 | 0.037 (2) | 0.032 (2) | 0.046 (2) | 0.0005 (17) | −0.0012 (16) | 0.0030 (17) |
C18 | 0.035 (2) | 0.036 (2) | 0.050 (2) | −0.0081 (17) | −0.0040 (17) | 0.0129 (18) |
C19 | 0.057 (3) | 0.049 (3) | 0.055 (3) | −0.001 (2) | −0.011 (2) | 0.017 (2) |
C20 | 0.075 (3) | 0.059 (3) | 0.065 (3) | −0.022 (3) | −0.021 (3) | 0.021 (2) |
C21 | 0.052 (3) | 0.076 (4) | 0.088 (4) | −0.012 (3) | −0.027 (3) | 0.050 (3) |
C22 | 0.045 (3) | 0.074 (3) | 0.091 (4) | 0.004 (2) | −0.004 (3) | 0.035 (3) |
C23 | 0.029 (2) | 0.046 (2) | 0.077 (3) | −0.0026 (19) | −0.0039 (19) | 0.028 (2) |
Geometric parameters (Å, º) top
S1—C6 | 1.745 (4) | C10—H10A | 0.9600 |
S1—C1 | 1.758 (4) | C10—H10B | 0.9600 |
Cl1—C23 | 1.733 (5) | C10—H10C | 0.9600 |
N1—C1 | 1.276 (4) | C11—C16 | 1.377 (6) |
N1—C4 | 1.425 (5) | C11—C12 | 1.386 (6) |
N2—C1 | 1.361 (4) | C12—C13 | 1.392 (7) |
N2—C5 | 1.393 (4) | C12—H12 | 0.9300 |
N2—C2 | 1.469 (4) | C13—C14 | 1.359 (8) |
O1—C5 | 1.196 (4) | C13—H13 | 0.9300 |
O2—C8 | 1.327 (5) | C14—C15 | 1.361 (8) |
O2—C9 | 1.443 (5) | C14—H14 | 0.9300 |
O3—C8 | 1.206 (5) | C15—C16 | 1.381 (6) |
C2—C11 | 1.514 (5) | C15—H15 | 0.9300 |
C2—C3 | 1.519 (5) | C16—H16 | 0.9300 |
C2—H2 | 0.9800 | C17—C18 | 1.452 (5) |
C3—C4 | 1.338 (5) | C17—H17 | 0.9300 |
C3—C8 | 1.479 (5) | C18—C19 | 1.381 (6) |
C4—C7 | 1.494 (5) | C18—C23 | 1.404 (6) |
C5—C6 | 1.493 (5) | C19—C20 | 1.382 (5) |
C6—C17 | 1.343 (5) | C19—H19 | 0.9300 |
C7—H7A | 0.9600 | C20—C21 | 1.375 (7) |
C7—H7B | 0.9600 | C20—H20 | 0.9300 |
C7—H7C | 0.9600 | C21—C22 | 1.363 (7) |
C9—C10 | 1.439 (8) | C21—H21 | 0.9300 |
C9—H9A | 0.9700 | C22—C23 | 1.370 (6) |
C9—H9B | 0.9700 | C22—H22 | 0.9300 |
| | | |
C6—S1—C1 | 91.65 (16) | H10A—C10—H10B | 109.5 |
C1—N1—C4 | 116.0 (3) | C9—C10—H10C | 109.5 |
C1—N2—C5 | 116.9 (3) | H10A—C10—H10C | 109.5 |
C1—N2—C2 | 121.1 (3) | H10B—C10—H10C | 109.5 |
C5—N2—C2 | 121.2 (3) | C16—C11—C12 | 117.8 (4) |
C8—O2—C9 | 117.7 (4) | C16—C11—C2 | 120.1 (3) |
N1—C1—N2 | 126.9 (3) | C12—C11—C2 | 122.1 (4) |
N1—C1—S1 | 121.7 (3) | C11—C12—C13 | 120.4 (5) |
N2—C1—S1 | 111.5 (2) | C11—C12—H12 | 119.8 |
N2—C2—C11 | 110.8 (3) | C13—C12—H12 | 119.8 |
N2—C2—C3 | 108.4 (3) | C14—C13—C12 | 120.3 (5) |
C11—C2—C3 | 111.7 (3) | C14—C13—H13 | 119.9 |
N2—C2—H2 | 108.6 | C12—C13—H13 | 119.9 |
C11—C2—H2 | 108.6 | C13—C14—C15 | 120.0 (5) |
C3—C2—H2 | 108.6 | C13—C14—H14 | 120.0 |
C4—C3—C8 | 123.2 (4) | C15—C14—H14 | 120.0 |
C4—C3—C2 | 121.6 (3) | C14—C15—C16 | 120.1 (6) |
C8—C3—C2 | 115.1 (3) | C14—C15—H15 | 120.0 |
C3—C4—N1 | 122.5 (3) | C16—C15—H15 | 120.0 |
C3—C4—C7 | 125.9 (4) | C11—C16—C15 | 121.3 (5) |
N1—C4—C7 | 111.5 (4) | C11—C16—H16 | 119.3 |
O1—C5—N2 | 124.1 (3) | C15—C16—H16 | 119.3 |
O1—C5—C6 | 126.5 (3) | C6—C17—C18 | 130.7 (4) |
N2—C5—C6 | 109.4 (3) | C6—C17—H17 | 114.6 |
C17—C6—C5 | 119.0 (3) | C18—C17—H17 | 114.6 |
C17—C6—S1 | 130.4 (3) | C19—C18—C23 | 116.1 (4) |
C5—C6—S1 | 110.5 (2) | C19—C18—C17 | 123.9 (4) |
C4—C7—H7A | 109.5 | C23—C18—C17 | 120.1 (4) |
C4—C7—H7B | 109.5 | C18—C19—C20 | 122.7 (4) |
H7A—C7—H7B | 109.5 | C18—C19—H19 | 118.6 |
C4—C7—H7C | 109.5 | C20—C19—H19 | 118.6 |
H7A—C7—H7C | 109.5 | C21—C20—C19 | 118.7 (5) |
H7B—C7—H7C | 109.5 | C21—C20—H20 | 120.6 |
O3—C8—O2 | 123.2 (4) | C19—C20—H20 | 120.6 |
O3—C8—C3 | 126.5 (5) | C22—C21—C20 | 120.7 (4) |
O2—C8—C3 | 110.3 (4) | C22—C21—H21 | 119.7 |
C10—C9—O2 | 109.9 (5) | C20—C21—H21 | 119.7 |
C10—C9—H9A | 109.7 | C21—C22—C23 | 119.9 (5) |
O2—C9—H9A | 109.7 | C21—C22—H22 | 120.0 |
C10—C9—H9B | 109.7 | C23—C22—H22 | 120.0 |
O2—C9—H9B | 109.7 | C22—C23—C18 | 121.9 (4) |
H9A—C9—H9B | 108.2 | C22—C23—Cl1 | 117.1 (4) |
C9—C10—H10A | 109.5 | C18—C23—Cl1 | 121.0 (3) |
C9—C10—H10B | 109.5 | | |
| | | |
C4—N1—C1—N2 | 2.0 (5) | C9—O2—C8—C3 | 179.2 (4) |
C4—N1—C1—S1 | −176.7 (2) | C4—C3—C8—O3 | 13.4 (7) |
C5—N2—C1—N1 | −176.9 (3) | C2—C3—C8—O3 | −163.8 (4) |
C2—N2—C1—N1 | 12.6 (5) | C4—C3—C8—O2 | −165.9 (4) |
C5—N2—C1—S1 | 1.9 (4) | C2—C3—C8—O2 | 16.9 (5) |
C2—N2—C1—S1 | −168.6 (2) | C8—O2—C9—C10 | −159.4 (5) |
C6—S1—C1—N1 | 177.6 (3) | N2—C2—C11—C16 | −67.0 (4) |
C6—S1—C1—N2 | −1.3 (3) | C3—C2—C11—C16 | 54.0 (4) |
C1—N2—C2—C11 | 102.2 (4) | N2—C2—C11—C12 | 114.9 (4) |
C5—N2—C2—C11 | −67.9 (4) | C3—C2—C11—C12 | −124.1 (4) |
C1—N2—C2—C3 | −20.6 (4) | C16—C11—C12—C13 | 0.8 (6) |
C5—N2—C2—C3 | 169.3 (3) | C2—C11—C12—C13 | 178.9 (4) |
N2—C2—C3—C4 | 17.6 (5) | C11—C12—C13—C14 | −0.1 (7) |
C11—C2—C3—C4 | −104.8 (4) | C12—C13—C14—C15 | 0.3 (8) |
N2—C2—C3—C8 | −165.2 (3) | C13—C14—C15—C16 | −1.2 (8) |
C11—C2—C3—C8 | 72.4 (4) | C12—C11—C16—C15 | −1.6 (6) |
C8—C3—C4—N1 | 177.3 (3) | C2—C11—C16—C15 | −179.8 (4) |
C2—C3—C4—N1 | −5.7 (5) | C14—C15—C16—C11 | 1.9 (7) |
C8—C3—C4—C7 | −1.9 (6) | C5—C6—C17—C18 | 178.2 (3) |
C2—C3—C4—C7 | 175.1 (3) | S1—C6—C17—C18 | 0.0 (6) |
C1—N1—C4—C3 | −5.3 (5) | C6—C17—C18—C19 | 4.1 (6) |
C1—N1—C4—C7 | 174.0 (3) | C6—C17—C18—C23 | −175.2 (4) |
C1—N2—C5—O1 | 179.7 (3) | C23—C18—C19—C20 | 0.1 (6) |
C2—N2—C5—O1 | −9.8 (5) | C17—C18—C19—C20 | −179.3 (4) |
C1—N2—C5—C6 | −1.6 (4) | C18—C19—C20—C21 | −0.6 (7) |
C2—N2—C5—C6 | 168.9 (3) | C19—C20—C21—C22 | 0.8 (7) |
O1—C5—C6—C17 | 0.7 (5) | C20—C21—C22—C23 | −0.5 (7) |
N2—C5—C6—C17 | −178.0 (3) | C21—C22—C23—C18 | −0.1 (7) |
O1—C5—C6—S1 | 179.2 (3) | C21—C22—C23—Cl1 | 178.7 (4) |
N2—C5—C6—S1 | 0.5 (3) | C19—C18—C23—C22 | 0.3 (6) |
C1—S1—C6—C17 | 178.7 (3) | C17—C18—C23—C22 | 179.7 (4) |
C1—S1—C6—C5 | 0.4 (2) | C19—C18—C23—Cl1 | −178.5 (3) |
C9—O2—C8—O3 | −0.2 (7) | C17—C18—C23—Cl1 | 0.9 (5) |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
C14—H14···O1i | 0.93 | 2.54 | 3.359 (6) | 147 |
C7—H7C···O3 | 0.96 | 2.40 | 2.873 (6) | 110 |
C19—H19···S1 | 0.93 | 2.53 | 3.251 (4) | 135 |
C17—H17···Cl1 | 0.93 | 2.55 | 3.034 (4) | 113 |
C17—H17···O1 | 0.93 | 2.50 | 2.863 (4) | 104 |
C21—H21···Cg1ii | 0.93 | 2.97 | 3.800 (6) | 150 |
Symmetry codes: (i) −x+3/2, y+1/2, −z+1/2; (ii) −x+2, −y, −z+1. |
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