Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S160053680703334X/kp2117sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S160053680703334X/kp2117Isup2.hkl |
CCDC reference: 657574
Key indicators
- Single-crystal X-ray study
- T = 291 K
- Mean (C-C) = 0.009 Å
- R factor = 0.047
- wR factor = 0.117
- Data-to-parameter ratio = 15.1
checkCIF/PLATON results
No syntax errors found
Alert level C PLAT127_ALERT_1_C Implicit Hall Symbol Inconsistent with Explicit F 2 2d PLAT241_ALERT_2_C Check High Ueq as Compared to Neighbors for O4 PLAT242_ALERT_2_C Check Low Ueq as Compared to Neighbors for Cu1 PLAT242_ALERT_2_C Check Low Ueq as Compared to Neighbors for C14 PLAT341_ALERT_3_C Low Bond Precision on C-C Bonds (x 1000) Ang ... 9 PLAT710_ALERT_4_C Delete 1-2-3 or 2-3-4 Linear Torsion Angle ... # 1 O3 -CU1 -O1 -C14 156.80 1.30 1.555 1.555 1.555 1.555 PLAT710_ALERT_4_C Delete 1-2-3 or 2-3-4 Linear Torsion Angle ... # 5 O1 -CU1 -O3 -C16 12.00 1.70 1.555 1.555 1.555 1.555 PLAT710_ALERT_4_C Delete 1-2-3 or 2-3-4 Linear Torsion Angle ... # 11 N2 -CU1 -N1 -C5 -116.20 1.30 16.644 1.555 1.555 1.555 PLAT710_ALERT_4_C Delete 1-2-3 or 2-3-4 Linear Torsion Angle ... # 15 N2 -CU1 -N1 -C1 61.10 1.50 16.644 1.555 1.555 1.555
Alert level G REFLT03_ALERT_4_G Please check that the estimate of the number of Friedel pairs is correct. If it is not, please give the correct count in the _publ_section_exptl_refinement section of the submitted CIF. From the CIF: _diffrn_reflns_theta_max 25.50 From the CIF: _reflns_number_total 3599 Count of symmetry unique reflns 1924 Completeness (_total/calc) 187.06% TEST3: Check Friedels for noncentro structure Estimate of Friedel pairs measured 1675 Fraction of Friedel pairs measured 0.871 Are heavy atom types Z>Si present yes PLAT794_ALERT_5_G Check Predicted Bond Valency for Cu1 (2) 2.05 PLAT860_ALERT_3_G Note: Number of Least-Squares Restraints ....... 1
0 ALERT level A = In general: serious problem 0 ALERT level B = Potentially serious problem 9 ALERT level C = Check and explain 3 ALERT level G = General alerts; check 1 ALERT type 1 CIF construction/syntax error, inconsistent or missing data 3 ALERT type 2 Indicator that the structure model may be wrong or deficient 2 ALERT type 3 Indicator that the structure quality may be low 5 ALERT type 4 Improvement, methodology, query or suggestion 1 ALERT type 5 Informative message, check
None of these references are cited in the CIF; do you wish to add them all here?
For related literature, see: Carlucci et al. (2002); Dai et al. (2004); Hou et al. (2003); Konar et al. (2004); Lee et al. (2004); Li et al. (2004, 2005); Madalan et al. (2005); Manna et al. (2005); Nassimbeni et al. (2004); Niu et al. (2003); Rarig & Zubieta (2003); Sunahara et al. (2004); Tong et al. (2002); Xia et al. (2004).
The ligand dpp (1 mmol, 0.2 g) was dissolved in a mixture water - methanol (v/v 1:1, 20 ml). To this solution, Cu(CH3COO)2. 4H2O (1 mmol, 0.26 g) was added and the resulting mixture was stirred and refluxed at 353 K for 3 h. Then the reaction mixture was cooled to room temperature. After filtration and evaporation in air for five days, dark-blue block-shaped crystals were obtained in the yield of 45%.
H atoms bonded to C atoms were positioned geometrically with C—H distance 0.93–0.97 Å, and treated as riding atoms with Uiso(H)=1.2Ueq(C). H atoms bonded to O atoms were located in a difference Fourier map and refined isotropically.
The ligand 1,3-di-4-pyridylpropane (dpp) has been extensively studied in recent years due to its strong coordination capability and bridging function. Here we report the structure of a new coordination polymer (I) (Fig. 1). The polymeric chain is assembled of [Cu(C13H14N2)(CH3COO)2(H2O)].H2O with the five coordinated CuII. The coordination sphere includes the coordinated water molecule, two carboxyl O atoms from two acetate anions and two pyridyl N from two 1,3-di-4-pyridylpropane(dpp) ligands (Table 1). The plane N1/O3/N2A/O1 defines the base of the pyramid while water O5 is the apex. The distance from Cu to the least-squares plane N1/O3/N2A/O1 is 0.1272 (3) Å. The dpp ligand acts as a bridging ligand linking neighbouring CuII atoms into a zigzag chain with the Cu1···Cu1 (-x + 7/4, y - 1/4, z - 3/4) separation distance of 12.851 (2) Å.
In the crystal structure of (I), there is π-π stacking interactions between the adjacent pyridine rings of neighbouring chains. The dihedral angle of aromatics involved in stacking is 8.788 (1) °. Interplanar average distance and ring-centroid separation distance are 3.441 (1) Å and 3.701 (4) Å, respectively. The chain structure is crosswise arranged into two-dimensional network (Fig. 2) by π-π stacking. The coordinated and uncoordinate water molecules, and carboxyl group take part in intermolecular hydrogen bonding (Table 2) stabilizing the structure.
None of these references are cited in the CIF; do you wish to add them all here?
For related literature, see: Carlucci et al. (2002); Dai et al. (2004); Hou et al. (2003); Konar et al. (2004); Lee et al. (2004); Li et al. (2004, 2005); Madalan et al. (2005); Manna et al. (2005); Nassimbeni et al. (2004); Niu et al. (2003); Rarig & Zubieta (2003); Sunahara et al. (2004); Tong et al. (2002); Xia et al. (2004).
Data collection: APEX2 (Bruker, 2004); cell refinement: APEX2; data reduction: SAINT (Bruker, 2004); program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: SHELXTL (Bruker, 2004); software used to prepare material for publication: SHELXTL.
[Cu(C2H3O2)2(C13H14N2)(H2O)]·H2O | F(000) = 3472 |
Mr = 415.92 | Dx = 1.401 Mg m−3 |
Orthorhombic, Fdd2 | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: F 2 2d | Cell parameters from 1579 reflections |
a = 18.988 (3) Å | θ = 2.5–17.4° |
b = 32.249 (6) Å | µ = 1.14 mm−1 |
c = 12.883 (2) Å | T = 291 K |
V = 7889 (2) Å3 | Block, blue |
Z = 16 | 0.26 × 0.18 × 0.10 mm |
Bruker APEX II CCD area-detector diffractometer | 3599 independent reflections |
Radiation source: fine-focus sealed tube | 2517 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.062 |
φ and ω scans | θmax = 25.5°, θmin = 2.5° |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | h = −22→21 |
Tmin = 0.757, Tmax = 0.895 | k = −38→38 |
11662 measured reflections | l = −15→15 |
Refinement on F2 | Hydrogen site location: inferred from neighbouring sites |
Least-squares matrix: full | H-atom parameters constrained |
R[F2 > 2σ(F2)] = 0.047 | w = 1/[σ2(Fo2) + (0.0455P)2 + 4.4493P] where P = (Fo2 + 2Fc2)/3 |
wR(F2) = 0.118 | (Δ/σ)max = 0.001 |
S = 1.03 | Δρmax = 0.37 e Å−3 |
3599 reflections | Δρmin = −0.34 e Å−3 |
238 parameters | Extinction correction: SHELXL97, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
1 restraint | Extinction coefficient: 0.00018 (5) |
Primary atom site location: structure-invariant direct methods | Absolute structure: Flack (1983), 1675 Friedel pairs |
Secondary atom site location: difference Fourier map | Absolute structure parameter: −0.03 (2) |
[Cu(C2H3O2)2(C13H14N2)(H2O)]·H2O | V = 7889 (2) Å3 |
Mr = 415.92 | Z = 16 |
Orthorhombic, Fdd2 | Mo Kα radiation |
a = 18.988 (3) Å | µ = 1.14 mm−1 |
b = 32.249 (6) Å | T = 291 K |
c = 12.883 (2) Å | 0.26 × 0.18 × 0.10 mm |
Bruker APEX II CCD area-detector diffractometer | 3599 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | 2517 reflections with I > 2σ(I) |
Tmin = 0.757, Tmax = 0.895 | Rint = 0.062 |
11662 measured reflections |
R[F2 > 2σ(F2)] = 0.047 | H-atom parameters constrained |
wR(F2) = 0.118 | Δρmax = 0.37 e Å−3 |
S = 1.03 | Δρmin = −0.34 e Å−3 |
3599 reflections | Absolute structure: Flack (1983), 1675 Friedel pairs |
238 parameters | Absolute structure parameter: −0.03 (2) |
1 restraint |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Cu1 | 0.94362 (3) | 0.221410 (19) | 0.13402 (4) | 0.0506 (2) | |
O1 | 1.0258 (2) | 0.21314 (13) | 0.2238 (3) | 0.0634 (11) | |
O2 | 1.0911 (3) | 0.26709 (19) | 0.1777 (4) | 0.0951 (17) | |
O3 | 0.8590 (2) | 0.22242 (12) | 0.0479 (3) | 0.0566 (10) | |
O4 | 0.8358 (2) | 0.16359 (14) | 0.1289 (5) | 0.0794 (12) | |
N1 | 0.8914 (2) | 0.25056 (13) | 0.2485 (3) | 0.0468 (11) | |
N2 | 0.7602 (2) | 0.43467 (13) | 0.7749 (3) | 0.0487 (11) | |
C1 | 0.8983 (3) | 0.24184 (17) | 0.3503 (4) | 0.0498 (14) | |
H1 | 0.9299 | 0.2213 | 0.3697 | 0.060* | |
C2 | 0.8608 (3) | 0.26183 (17) | 0.4273 (4) | 0.0499 (14) | |
H2 | 0.8683 | 0.2549 | 0.4965 | 0.060* | |
C3 | 0.8124 (3) | 0.29185 (14) | 0.4024 (4) | 0.0434 (13) | |
C4 | 0.8042 (3) | 0.30058 (19) | 0.2972 (5) | 0.0552 (15) | |
H4 | 0.7718 | 0.3205 | 0.2758 | 0.066* | |
C5 | 0.8443 (3) | 0.27966 (17) | 0.2248 (4) | 0.0551 (15) | |
H5A | 0.8380 | 0.2863 | 0.1552 | 0.066* | |
C6 | 0.7696 (3) | 0.31317 (18) | 0.4853 (4) | 0.0553 (15) | |
H6A | 0.7473 | 0.2919 | 0.5272 | 0.066* | |
H6B | 0.8020 | 0.3281 | 0.5302 | 0.066* | |
C7 | 0.7137 (3) | 0.34300 (18) | 0.4510 (5) | 0.0579 (16) | |
H7A | 0.6850 | 0.3299 | 0.3980 | 0.069* | |
H7B | 0.7360 | 0.3671 | 0.4201 | 0.069* | |
C8 | 0.6663 (3) | 0.35713 (19) | 0.5390 (5) | 0.0657 (17) | |
H8A | 0.6275 | 0.3729 | 0.5096 | 0.079* | |
H8B | 0.6464 | 0.3328 | 0.5721 | 0.079* | |
C9 | 0.7015 (3) | 0.38344 (15) | 0.6215 (5) | 0.0503 (14) | |
C10 | 0.7441 (3) | 0.41616 (17) | 0.5972 (4) | 0.0529 (15) | |
H10 | 0.7545 | 0.4217 | 0.5281 | 0.064* | |
C11 | 0.7718 (3) | 0.44097 (17) | 0.6741 (4) | 0.0517 (15) | |
H11 | 0.8000 | 0.4632 | 0.6547 | 0.062* | |
C12 | 0.7200 (4) | 0.40184 (17) | 0.7989 (5) | 0.0627 (16) | |
H12 | 0.7115 | 0.3965 | 0.8687 | 0.075* | |
C13 | 0.6905 (3) | 0.37572 (18) | 0.7271 (5) | 0.0607 (16) | |
H13 | 0.6636 | 0.3532 | 0.7483 | 0.073* | |
C14 | 1.0826 (4) | 0.2345 (3) | 0.2237 (5) | 0.0641 (17) | |
C15 | 1.1433 (4) | 0.2170 (3) | 0.2868 (7) | 0.101 (3) | |
H15A | 1.1846 | 0.2336 | 0.2759 | 0.152* | |
H15B | 1.1525 | 0.1890 | 0.2652 | 0.152* | |
H15C | 1.1311 | 0.2172 | 0.3591 | 0.152* | |
C16 | 0.8226 (3) | 0.1898 (2) | 0.0627 (5) | 0.0638 (17) | |
C17 | 0.7590 (4) | 0.1858 (3) | −0.0080 (6) | 0.094 (2) | |
H17A | 0.7302 | 0.1631 | 0.0149 | 0.141* | |
H17B | 0.7745 | 0.1807 | −0.0778 | 0.141* | |
H17C | 0.7322 | 0.2110 | −0.0059 | 0.141* | |
O5 | 0.9779 (3) | 0.28664 (15) | 0.0658 (4) | 0.0954 (16) | |
H1W | 1.0175 | 0.2760 | 0.0731 | 0.143* | |
H2W | 0.9795 | 0.3068 | 0.0257 | 0.143* | |
O6 | 0.7594 (3) | 0.09240 (19) | 0.1507 (5) | 0.133 (2) | |
H3W | 0.7813 | 0.1140 | 0.1647 | 0.200* | |
H4W | 0.7643 | 0.0762 | 0.0993 | 0.200* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Cu1 | 0.0534 (4) | 0.0558 (4) | 0.0425 (3) | 0.0047 (3) | −0.0012 (4) | −0.0031 (3) |
O1 | 0.063 (3) | 0.074 (3) | 0.052 (3) | 0.013 (2) | −0.007 (2) | 0.002 (2) |
O2 | 0.088 (4) | 0.113 (4) | 0.084 (4) | −0.015 (3) | −0.006 (3) | 0.018 (3) |
O3 | 0.056 (3) | 0.062 (3) | 0.052 (2) | 0.006 (2) | −0.007 (2) | −0.0083 (19) |
O4 | 0.077 (3) | 0.077 (3) | 0.085 (3) | −0.011 (2) | −0.008 (3) | 0.002 (3) |
N1 | 0.049 (3) | 0.046 (3) | 0.045 (3) | 0.003 (2) | 0.000 (2) | 0.001 (2) |
N2 | 0.057 (3) | 0.047 (3) | 0.042 (3) | −0.004 (2) | 0.003 (2) | 0.004 (2) |
C1 | 0.047 (3) | 0.052 (3) | 0.051 (4) | 0.004 (3) | −0.003 (3) | 0.005 (3) |
C2 | 0.051 (4) | 0.053 (3) | 0.046 (3) | −0.001 (3) | −0.004 (3) | 0.002 (3) |
C3 | 0.044 (3) | 0.037 (2) | 0.049 (4) | −0.007 (2) | −0.005 (3) | −0.008 (2) |
C4 | 0.067 (4) | 0.052 (3) | 0.046 (3) | 0.013 (3) | −0.009 (3) | −0.003 (3) |
C5 | 0.070 (4) | 0.056 (3) | 0.039 (3) | 0.014 (3) | −0.006 (3) | 0.000 (3) |
C6 | 0.055 (4) | 0.057 (3) | 0.054 (4) | −0.007 (3) | −0.002 (3) | −0.013 (3) |
C7 | 0.062 (4) | 0.053 (3) | 0.059 (4) | 0.010 (3) | −0.008 (3) | −0.018 (3) |
C8 | 0.053 (4) | 0.069 (4) | 0.075 (4) | 0.007 (3) | −0.002 (3) | −0.023 (3) |
C9 | 0.044 (3) | 0.041 (3) | 0.066 (4) | 0.003 (2) | −0.002 (3) | −0.012 (3) |
C10 | 0.056 (4) | 0.057 (3) | 0.046 (3) | 0.004 (3) | 0.002 (3) | −0.009 (3) |
C11 | 0.054 (4) | 0.050 (3) | 0.051 (4) | −0.005 (3) | −0.002 (3) | 0.000 (3) |
C12 | 0.086 (5) | 0.052 (3) | 0.050 (3) | −0.007 (3) | 0.000 (3) | 0.007 (3) |
C13 | 0.070 (4) | 0.049 (3) | 0.064 (4) | −0.016 (3) | 0.000 (3) | 0.003 (3) |
C14 | 0.048 (4) | 0.099 (5) | 0.046 (4) | 0.004 (4) | 0.007 (3) | −0.014 (4) |
C15 | 0.058 (5) | 0.150 (8) | 0.095 (6) | 0.016 (5) | −0.026 (5) | −0.007 (5) |
C16 | 0.055 (4) | 0.079 (5) | 0.057 (4) | 0.009 (4) | 0.001 (3) | −0.026 (4) |
C17 | 0.063 (5) | 0.135 (7) | 0.084 (5) | 0.003 (5) | −0.013 (4) | −0.050 (5) |
O5 | 0.079 (3) | 0.094 (4) | 0.113 (4) | −0.001 (3) | 0.011 (3) | 0.027 (3) |
O6 | 0.169 (6) | 0.124 (5) | 0.107 (5) | −0.062 (4) | 0.025 (5) | −0.015 (4) |
Cu1—O3 | 1.952 (4) | C7—C8 | 1.517 (8) |
Cu1—O1 | 1.960 (4) | C7—H7A | 0.9700 |
Cu1—N1 | 2.011 (4) | C7—H7B | 0.9700 |
Cu1—N2i | 2.037 (4) | C8—C9 | 1.516 (8) |
Cu1—O5 | 2.371 (5) | C8—H8A | 0.9700 |
O1—C14 | 1.280 (8) | C8—H8B | 0.9700 |
O2—C14 | 1.217 (8) | C9—C10 | 1.366 (7) |
O3—C16 | 1.275 (8) | C9—C13 | 1.398 (8) |
O4—C16 | 1.226 (8) | C10—C11 | 1.377 (7) |
N1—C5 | 1.332 (6) | C10—H10 | 0.9300 |
N1—C1 | 1.347 (6) | C11—H11 | 0.9300 |
N2—C11 | 1.332 (6) | C12—C13 | 1.370 (8) |
N2—C12 | 1.342 (7) | C12—H12 | 0.9300 |
N2—Cu1ii | 2.037 (4) | C13—H13 | 0.9300 |
C1—C2 | 1.381 (7) | C14—C15 | 1.520 (9) |
C1—H1 | 0.9300 | C15—H15A | 0.9600 |
C2—C3 | 1.373 (7) | C15—H15B | 0.9600 |
C2—H2 | 0.9300 | C15—H15C | 0.9600 |
C3—C4 | 1.393 (8) | C16—C17 | 1.517 (9) |
C3—C6 | 1.508 (7) | C17—H17A | 0.9600 |
C4—C5 | 1.380 (8) | C17—H17B | 0.9600 |
C4—H4 | 0.9300 | C17—H17C | 0.9600 |
C5—H5A | 0.9300 | O5—H1W | 0.8307 |
C6—C7 | 1.500 (8) | O5—H2W | 0.8299 |
C6—H6A | 0.9700 | O6—H3W | 0.8316 |
C6—H6B | 0.9700 | O6—H4W | 0.8492 |
O3—Cu1—O1 | 172.88 (18) | H7A—C7—H7B | 107.8 |
O3—Cu1—N1 | 90.19 (17) | C9—C8—C7 | 115.5 (5) |
O1—Cu1—N1 | 91.35 (17) | C9—C8—H8A | 108.4 |
O3—Cu1—N2i | 88.36 (17) | C7—C8—H8A | 108.4 |
O1—Cu1—N2i | 89.17 (17) | C9—C8—H8B | 108.4 |
N1—Cu1—N2i | 172.12 (18) | C7—C8—H8B | 108.4 |
O3—Cu1—O5 | 90.03 (17) | H8A—C8—H8B | 107.5 |
O1—Cu1—O5 | 96.93 (19) | C10—C9—C13 | 116.7 (5) |
N1—Cu1—O5 | 89.59 (17) | C10—C9—C8 | 122.2 (6) |
N2i—Cu1—O5 | 98.15 (18) | C13—C9—C8 | 121.1 (5) |
C14—O1—Cu1 | 126.6 (4) | C9—C10—C11 | 120.7 (5) |
C16—O3—Cu1 | 110.4 (4) | C9—C10—H10 | 119.7 |
C5—N1—C1 | 115.8 (5) | C11—C10—H10 | 119.7 |
C5—N1—Cu1 | 119.5 (4) | N2—C11—C10 | 123.3 (5) |
C1—N1—Cu1 | 124.6 (4) | N2—C11—H11 | 118.4 |
C11—N2—C12 | 116.1 (5) | C10—C11—H11 | 118.4 |
C11—N2—Cu1ii | 120.8 (4) | N2—C12—C13 | 124.2 (6) |
C12—N2—Cu1ii | 123.0 (4) | N2—C12—H12 | 117.9 |
N1—C1—C2 | 123.5 (5) | C13—C12—H12 | 117.9 |
N1—C1—H1 | 118.3 | C12—C13—C9 | 119.1 (5) |
C2—C1—H1 | 118.3 | C12—C13—H13 | 120.5 |
C3—C2—C1 | 120.4 (5) | C9—C13—H13 | 120.5 |
C3—C2—H2 | 119.8 | O2—C14—O1 | 125.3 (7) |
C1—C2—H2 | 119.8 | O2—C14—C15 | 118.8 (7) |
C2—C3—C4 | 116.4 (5) | O1—C14—C15 | 115.9 (7) |
C2—C3—C6 | 121.1 (5) | C14—C15—H15A | 109.5 |
C4—C3—C6 | 122.5 (5) | C14—C15—H15B | 109.5 |
C5—C4—C3 | 119.8 (5) | H15A—C15—H15B | 109.5 |
C5—C4—H4 | 120.1 | C14—C15—H15C | 109.5 |
C3—C4—H4 | 120.1 | H15A—C15—H15C | 109.5 |
N1—C5—C4 | 124.0 (5) | H15B—C15—H15C | 109.5 |
N1—C5—H5A | 118.0 | O4—C16—O3 | 124.2 (6) |
C4—C5—H5A | 118.0 | O4—C16—C17 | 121.5 (7) |
C7—C6—C3 | 117.7 (5) | O3—C16—C17 | 114.4 (7) |
C7—C6—H6A | 107.9 | C16—C17—H17A | 109.5 |
C3—C6—H6A | 107.9 | C16—C17—H17B | 109.5 |
C7—C6—H6B | 107.9 | H17A—C17—H17B | 109.5 |
C3—C6—H6B | 107.9 | C16—C17—H17C | 109.5 |
H6A—C6—H6B | 107.2 | H17A—C17—H17C | 109.5 |
C6—C7—C8 | 113.1 (5) | H17B—C17—H17C | 109.5 |
C6—C7—H7A | 109.0 | Cu1—O5—H1W | 80.8 |
C8—C7—H7A | 109.0 | Cu1—O5—H2W | 159.1 |
C6—C7—H7B | 109.0 | H1W—O5—H2W | 111.2 |
C8—C7—H7B | 109.0 | H3W—O6—H4W | 129.1 |
O3—Cu1—O1—C14 | 156.8 (13) | C1—N1—C5—C4 | 0.4 (8) |
N1—Cu1—O1—C14 | −100.8 (5) | Cu1—N1—C5—C4 | 178.0 (5) |
N2i—Cu1—O1—C14 | 87.1 (5) | C3—C4—C5—N1 | 0.5 (9) |
O5—Cu1—O1—C14 | −11.0 (5) | C2—C3—C6—C7 | −174.9 (5) |
O1—Cu1—O3—C16 | 12.0 (17) | C4—C3—C6—C7 | 3.6 (8) |
N1—Cu1—O3—C16 | −90.4 (4) | C3—C6—C7—C8 | 170.5 (5) |
N2i—Cu1—O3—C16 | 81.8 (4) | C6—C7—C8—C9 | 66.6 (7) |
O5—Cu1—O3—C16 | 180.0 (4) | C7—C8—C9—C10 | 47.2 (8) |
O3—Cu1—N1—C5 | −36.9 (4) | C7—C8—C9—C13 | −134.2 (6) |
O1—Cu1—N1—C5 | 150.1 (4) | C13—C9—C10—C11 | −2.7 (8) |
N2i—Cu1—N1—C5 | −116.2 (13) | C8—C9—C10—C11 | 175.9 (5) |
O5—Cu1—N1—C5 | 53.1 (4) | C12—N2—C11—C10 | 0.9 (9) |
O3—Cu1—N1—C1 | 140.5 (4) | Cu1ii—N2—C11—C10 | 177.5 (4) |
O1—Cu1—N1—C1 | −32.6 (4) | C9—C10—C11—N2 | 0.9 (9) |
N2i—Cu1—N1—C1 | 61.1 (15) | C11—N2—C12—C13 | −0.8 (9) |
O5—Cu1—N1—C1 | −129.5 (4) | Cu1ii—N2—C12—C13 | −177.4 (5) |
C5—N1—C1—C2 | −1.3 (8) | N2—C12—C13—C9 | −0.9 (10) |
Cu1—N1—C1—C2 | −178.8 (4) | C10—C9—C13—C12 | 2.7 (8) |
N1—C1—C2—C3 | 1.3 (9) | C8—C9—C13—C12 | −176.0 (6) |
C1—C2—C3—C4 | −0.2 (8) | Cu1—O1—C14—O2 | 10.7 (9) |
C1—C2—C3—C6 | 178.4 (5) | Cu1—O1—C14—C15 | −169.1 (4) |
C2—C3—C4—C5 | −0.6 (8) | Cu1—O3—C16—O4 | 6.4 (7) |
C6—C3—C4—C5 | −179.2 (5) | Cu1—O3—C16—C17 | −174.7 (4) |
Symmetry codes: (i) −x+7/4, y−1/4, z−3/4; (ii) −x+7/4, y+1/4, z+3/4. |
D—H···A | D—H | H···A | D···A | D—H···A |
O5—H1W···O2 | 0.83 | 1.96 | 2.663 (8) | 142 |
O5—H2W···O6iii | 0.83 | 1.99 | 2.795 (8) | 164 |
O6—H3W···O4 | 0.83 | 1.96 | 2.730 (7) | 154 |
O6—H4W···O1iv | 0.85 | 2.07 | 2.916 (7) | 180 |
Symmetry codes: (iii) −x+7/4, y+1/4, z−1/4; (iv) x−1/4, −y+1/4, z−1/4. |
Experimental details
Crystal data | |
Chemical formula | [Cu(C2H3O2)2(C13H14N2)(H2O)]·H2O |
Mr | 415.92 |
Crystal system, space group | Orthorhombic, Fdd2 |
Temperature (K) | 291 |
a, b, c (Å) | 18.988 (3), 32.249 (6), 12.883 (2) |
V (Å3) | 7889 (2) |
Z | 16 |
Radiation type | Mo Kα |
µ (mm−1) | 1.14 |
Crystal size (mm) | 0.26 × 0.18 × 0.10 |
Data collection | |
Diffractometer | Bruker APEX II CCD area-detector |
Absorption correction | Multi-scan (SADABS; Sheldrick, 1996) |
Tmin, Tmax | 0.757, 0.895 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 11662, 3599, 2517 |
Rint | 0.062 |
(sin θ/λ)max (Å−1) | 0.606 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.047, 0.118, 1.03 |
No. of reflections | 3599 |
No. of parameters | 238 |
No. of restraints | 1 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.37, −0.34 |
Absolute structure | Flack (1983), 1675 Friedel pairs |
Absolute structure parameter | −0.03 (2) |
Computer programs: APEX2 (Bruker, 2004), APEX2, SAINT (Bruker, 2004), SHELXS97 (Sheldrick, 1997), SHELXL97 (Sheldrick, 1997), SHELXTL (Bruker, 2004), SHELXTL.
Cu1—O3 | 1.952 (4) | Cu1—N2i | 2.037 (4) |
Cu1—O1 | 1.960 (4) | Cu1—O5 | 2.371 (5) |
Cu1—N1 | 2.011 (4) | ||
O3—Cu1—O1 | 172.88 (18) | O1—Cu1—O5 | 96.93 (19) |
O1—Cu1—N1 | 91.35 (17) | N1—Cu1—O5 | 89.59 (17) |
O1—Cu1—N2i | 89.17 (17) | N2i—Cu1—O5 | 98.15 (18) |
O3—Cu1—O5 | 90.03 (17) |
Symmetry code: (i) −x+7/4, y−1/4, z−3/4. |
D—H···A | D—H | H···A | D···A | D—H···A |
O5—H1W···O2 | 0.83 | 1.96 | 2.663 (8) | 141.5 |
O5—H2W···O6ii | 0.83 | 1.99 | 2.795 (8) | 163.6 |
O6—H3W···O4 | 0.83 | 1.96 | 2.730 (7) | 153.8 |
O6—H4W···O1iii | 0.85 | 2.07 | 2.916 (7) | 179.7 |
Symmetry codes: (ii) −x+7/4, y+1/4, z−1/4; (iii) x−1/4, −y+1/4, z−1/4. |
Subscribe to Acta Crystallographica Section E: Crystallographic Communications
The full text of this article is available to subscribers to the journal.
- Information on subscribing
- Sample issue
- If you have already subscribed, you may need to register
The ligand 1,3-di-4-pyridylpropane (dpp) has been extensively studied in recent years due to its strong coordination capability and bridging function. Here we report the structure of a new coordination polymer (I) (Fig. 1). The polymeric chain is assembled of [Cu(C13H14N2)(CH3COO)2(H2O)].H2O with the five coordinated CuII. The coordination sphere includes the coordinated water molecule, two carboxyl O atoms from two acetate anions and two pyridyl N from two 1,3-di-4-pyridylpropane(dpp) ligands (Table 1). The plane N1/O3/N2A/O1 defines the base of the pyramid while water O5 is the apex. The distance from Cu to the least-squares plane N1/O3/N2A/O1 is 0.1272 (3) Å. The dpp ligand acts as a bridging ligand linking neighbouring CuII atoms into a zigzag chain with the Cu1···Cu1 (-x + 7/4, y - 1/4, z - 3/4) separation distance of 12.851 (2) Å.
In the crystal structure of (I), there is π-π stacking interactions between the adjacent pyridine rings of neighbouring chains. The dihedral angle of aromatics involved in stacking is 8.788 (1) °. Interplanar average distance and ring-centroid separation distance are 3.441 (1) Å and 3.701 (4) Å, respectively. The chain structure is crosswise arranged into two-dimensional network (Fig. 2) by π-π stacking. The coordinated and uncoordinate water molecules, and carboxyl group take part in intermolecular hydrogen bonding (Table 2) stabilizing the structure.