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The trigonally trisubstituted acid 3,5-dihydroxybenzoic acid forms hydrated salt-type adducts with organic diamines. In 1,4-diazabicyclo[2.2.2]octane–3,5-dihydroxybenzoic acid–water (1/1/1) (1), where
Z′ = 2 in
P2
1/
c, the constitution is [HN(CH
2CH
2)
3N]
+·[(HO)
2C
6H
3COO]
−·H
2O: the anions and the water molecules are linked by six O—H
O hydrogen bonds to form two-dimensional sheets and each cation is linked to a single sheet by one O—H
N and one N—H
O hydrogen bond. Piperazine–3,5-dihydroxybenzoic acid–water (1/2/4) (2) and 1,2-diaminoethane–3,5-dihydroxybenzoic acid–water (1/2/2) (3) are also both salts with constitutions [H
2N(CH
2CH
2)
2NH
2]
2+·2[(HO)
2C
6H
3COO]
−·4H
2O and [H
3NCH
2CH
2NH
3]
2+·2[(HO)
2C
6H
3COO]
−·2H
2O, respectively. Both (2) and (3) have supramolecular structures which are three-dimensional: in (2) the anions and the water molecules are linked by six O—H
O hydrogen bonds to form a three-dimensional framework enclosing large centrosymmetric voids, which contain the cations that are linked to the framework by two N—H
O hydrogen bonds; in (3) the construction of the three-dimensional framework requires the participation of cations, anions and water molecules, which are linked together by four O—H
O and three N—H
O hydrogen bonds.
Supporting information
CCDC references: 166502; 166503; 166504
For all compounds, data collection: Kappa-CCD server software (Nonius, 1997); cell refinement: DENZO-SMN (Otwinowski & Minor, 1997); data reduction: DENZO-SMN (Otwinowski & Minor, 1997); program(s) used to solve structure: SHELXS97 (Sheldrick, 1997a). Program(s) used to refine structure: SHELXL97 (Sheldrick, 1997b) for (1); NRCVAX96 and SHELXL97 (Sheldrick, 1997b) for (2), (3). Molecular graphics: ORTEP (Johnson, 1976), PLATON (Spek, 2000) for (1); NRCVAX96, ORTEP (Johnson, 1976), PLATON (Spek, 2000) for (2), (3). Software used to prepare material for publication: SHELXL97 and WORDPERFECT macro PRPKAPPA (Ferguson, 1999) for (1); NRCVAX96, SHELXL97 and WORDPERFECT macro PRPKAPPA (Ferguson, 1999) for (2), (3).
(1) 1,4-Diazabicyclo[2.2.2]octane–3,5-dihydroxybenzoic acid–water (1/1/1)
top
Crystal data top
C6H13N2·C7H5O4·H2O | F(000) = 1216 |
Mr = 284.31 | Dx = 1.341 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
a = 9.4478 (4) Å | Cell parameters from 15105 reflections |
b = 11.7644 (4) Å | θ = 2.8–27.5° |
c = 25.9024 (12) Å | µ = 0.10 mm−1 |
β = 101.969 (2)° | T = 100 K |
V = 2816.4 (2) Å3 | Plate, colourless |
Z = 8 | 0.30 × 0.25 × 0.13 mm |
Data collection top
Kappa-CCD diffractometer | 6382 independent reflections |
Radiation source: fine-focus sealed X-ray tube | 3976 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.028 |
ϕ scans and ω scans with κ offsets | θmax = 27.5°, θmin = 2.8° |
Absorption correction: multi-scan DENZO-SMN (Otwinowski & Minor, 1997) | h = 0→12 |
Tmin = 0.970, Tmax = 0.987 | k = −15→0 |
15105 measured reflections | l = −33→32 |
Refinement top
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.054 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.131 | H-atom parameters constrained |
S = 1.05 | w = 1/[σ2(Fo2) + (0.0544P)2 + 0.0968P] where P = (Fo2 + 2Fc2)/3 |
6382 reflections | (Δ/σ)max < 0.001 |
379 parameters | Δρmax = 0.28 e Å−3 |
4 restraints | Δρmin = −0.22 e Å−3 |
Crystal data top
C6H13N2·C7H5O4·H2O | V = 2816.4 (2) Å3 |
Mr = 284.31 | Z = 8 |
Monoclinic, P21/c | Mo Kα radiation |
a = 9.4478 (4) Å | µ = 0.10 mm−1 |
b = 11.7644 (4) Å | T = 100 K |
c = 25.9024 (12) Å | 0.30 × 0.25 × 0.13 mm |
β = 101.969 (2)° | |
Data collection top
Kappa-CCD diffractometer | 6382 independent reflections |
Absorption correction: multi-scan DENZO-SMN (Otwinowski & Minor, 1997) | 3976 reflections with I > 2σ(I) |
Tmin = 0.970, Tmax = 0.987 | Rint = 0.028 |
15105 measured reflections | |
Refinement top
R[F2 > 2σ(F2)] = 0.054 | 4 restraints |
wR(F2) = 0.131 | H-atom parameters constrained |
S = 1.05 | Δρmax = 0.28 e Å−3 |
6382 reflections | Δρmin = −0.22 e Å−3 |
379 parameters | |
Special details top
Experimental. The program DENZO-SMN (Otwinowski & Minor, 1997) uses a scaling algorithm
(Fox & Holmes, 1966) which effectively corrects for absorption effects. High
redundancy data were used in the scaling program hence the 'multi-scan' code
word was used. No transmission coefficients are available from the program
(only scale factors for each frame). The scale factors in the experimental
table are calculated from the 'size' command in the SHELXL97 input
file. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
O11 | 0.36065 (14) | 0.22719 (10) | 0.38842 (5) | 0.0249 (3) | |
O13 | 0.32294 (16) | 0.28105 (10) | 0.19326 (5) | 0.0307 (4) | |
O12 | 0.31406 (15) | 0.04408 (10) | 0.39657 (5) | 0.0277 (3) | |
O15 | 0.36665 (17) | −0.12219 (10) | 0.22238 (5) | 0.0307 (4) | |
C11 | 0.33986 (19) | 0.11054 (15) | 0.31178 (7) | 0.0188 (4) | |
C12 | 0.3335 (2) | 0.20387 (15) | 0.27838 (7) | 0.0206 (4) | |
C13 | 0.3337 (2) | 0.18777 (15) | 0.22520 (7) | 0.0223 (4) | |
C14 | 0.3426 (2) | 0.07860 (15) | 0.20554 (7) | 0.0217 (4) | |
C15 | 0.3521 (2) | −0.01404 (15) | 0.23915 (7) | 0.0211 (4) | |
C16 | 0.3492 (2) | 0.00104 (15) | 0.29214 (7) | 0.0205 (4) | |
C17 | 0.3381 (2) | 0.12686 (15) | 0.36933 (7) | 0.0199 (4) | |
O21 | 0.16930 (19) | 0.94541 (12) | 0.55696 (6) | 0.0470 (5) | |
O22 | 0.17361 (16) | 0.77812 (11) | 0.59704 (5) | 0.0315 (4) | |
O23 | 0.20451 (15) | 0.83694 (11) | 0.36934 (5) | 0.0275 (3) | |
O25 | 0.13207 (17) | 0.48982 (10) | 0.45457 (5) | 0.0331 (4) | |
C21 | 0.1703 (2) | 0.77829 (15) | 0.50540 (7) | 0.0204 (4) | |
C22 | 0.1848 (2) | 0.83976 (16) | 0.46093 (7) | 0.0217 (4) | |
C23 | 0.1869 (2) | 0.78241 (15) | 0.41432 (7) | 0.0209 (4) | |
C24 | 0.1711 (2) | 0.66506 (15) | 0.41152 (7) | 0.0219 (4) | |
C25 | 0.1526 (2) | 0.60463 (15) | 0.45574 (7) | 0.0223 (4) | |
C26 | 0.1538 (2) | 0.66076 (15) | 0.50312 (7) | 0.0217 (4) | |
C27 | 0.1710 (2) | 0.84099 (17) | 0.55641 (8) | 0.0255 (5) | |
N31 | 0.34719 (17) | 0.22007 (12) | 0.49341 (6) | 0.0223 (4) | |
N32 | 0.33476 (17) | 0.25056 (13) | 0.58905 (6) | 0.0226 (4) | |
C31 | 0.1919 (2) | 0.22225 (16) | 0.49827 (7) | 0.0248 (5) | |
C32 | 0.1884 (2) | 0.2400 (2) | 0.55635 (8) | 0.0396 (6) | |
C33 | 0.4229 (2) | 0.12401 (16) | 0.52558 (7) | 0.0265 (5) | |
C34 | 0.4167 (3) | 0.14669 (18) | 0.58332 (8) | 0.0354 (6) | |
C35 | 0.4207 (2) | 0.32963 (16) | 0.51227 (7) | 0.0269 (5) | |
C36 | 0.4078 (3) | 0.34652 (18) | 0.56955 (8) | 0.0403 (6) | |
N41 | 0.14892 (17) | 0.88461 (12) | 0.68157 (6) | 0.0229 (4) | |
N42 | 0.13296 (17) | 0.97439 (13) | 0.76916 (6) | 0.0244 (4) | |
C41 | 0.2969 (2) | 0.91240 (17) | 0.71126 (8) | 0.0292 (5) | |
C42 | 0.2852 (2) | 0.95525 (17) | 0.76594 (8) | 0.0299 (5) | |
C43 | 0.0776 (2) | 0.80384 (16) | 0.71260 (8) | 0.0282 (5) | |
C44 | 0.0576 (2) | 0.86338 (16) | 0.76306 (8) | 0.0286 (5) | |
C45 | 0.0608 (2) | 0.99054 (17) | 0.67159 (8) | 0.0309 (5) | |
C46 | 0.0629 (2) | 1.04780 (16) | 0.72492 (7) | 0.0268 (5) | |
O1 | 0.40434 (17) | −0.13282 (12) | 0.12370 (6) | 0.0321 (4) | |
O2 | 0.14775 (18) | 0.39832 (12) | 0.36246 (6) | 0.0350 (4) | |
H13 | 0.3264 | 0.2607 | 0.1625 | 0.046* | |
H15 | 0.3793 | −0.1209 | 0.1912 | 0.046* | |
H12 | 0.3289 | 0.2785 | 0.2919 | 0.025* | |
H14 | 0.3421 | 0.0675 | 0.1692 | 0.026* | |
H16 | 0.3535 | −0.0629 | 0.3148 | 0.025* | |
H23 | 0.2337 | 0.9036 | 0.3768 | 0.041* | |
H25 | 0.1363 | 0.4648 | 0.4245 | 0.050* | |
H22 | 0.1932 | 0.9202 | 0.4625 | 0.026* | |
H24 | 0.1729 | 0.6263 | 0.3795 | 0.026* | |
H26 | 0.1435 | 0.6193 | 0.5336 | 0.026* | |
H31 | 0.3515 | 0.2091 | 0.4582 | 0.027* | |
H31A | 0.1442 | 0.1496 | 0.4856 | 0.030* | |
H31B | 0.1401 | 0.2848 | 0.4767 | 0.030* | |
H32A | 0.1326 | 0.3097 | 0.5601 | 0.047* | |
H32B | 0.1385 | 0.1750 | 0.5690 | 0.047* | |
H33A | 0.5247 | 0.1195 | 0.5216 | 0.032* | |
H33B | 0.3746 | 0.0511 | 0.5137 | 0.032* | |
H34A | 0.3707 | 0.0811 | 0.5973 | 0.042* | |
H34B | 0.5164 | 0.1543 | 0.6044 | 0.042* | |
H35A | 0.3740 | 0.3935 | 0.4903 | 0.032* | |
H35B | 0.5238 | 0.3267 | 0.5098 | 0.032* | |
H36A | 0.5057 | 0.3555 | 0.5919 | 0.048* | |
H36B | 0.3529 | 0.4171 | 0.5724 | 0.048* | |
H41 | 0.1548 | 0.8514 | 0.6495 | 0.028* | |
H41A | 0.3406 | 0.9717 | 0.6924 | 0.035* | |
H41B | 0.3590 | 0.8439 | 0.7146 | 0.035* | |
H42A | 0.3290 | 0.8988 | 0.7929 | 0.036* | |
H42B | 0.3398 | 1.0272 | 0.7736 | 0.036* | |
H43A | 0.1382 | 0.7352 | 0.7216 | 0.034* | |
H43B | −0.0176 | 0.7802 | 0.6915 | 0.034* | |
H44A | −0.0468 | 0.8752 | 0.7618 | 0.034* | |
H44B | 0.0966 | 0.8147 | 0.7939 | 0.034* | |
H45A | −0.0398 | 0.9720 | 0.6540 | 0.037* | |
H45B | 0.1019 | 1.0423 | 0.6484 | 0.037* | |
H46A | 0.1159 | 1.1207 | 0.7266 | 0.032* | |
H46B | −0.0375 | 1.0645 | 0.7282 | 0.032* | |
H1A | 0.328 (3) | −0.178 (2) | 0.1098 (11) | 0.082 (5)* | |
H1B | 0.484 (3) | −0.176 (2) | 0.1225 (11) | 0.082 (5)* | |
H2A | 0.147 (3) | 0.445 (2) | 0.3330 (10) | 0.082 (5)* | |
H2B | 0.221 (3) | 0.349 (2) | 0.3646 (11) | 0.082 (5)* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
O11 | 0.0363 (9) | 0.0214 (7) | 0.0181 (7) | −0.0014 (6) | 0.0080 (6) | −0.0001 (6) |
O13 | 0.0539 (10) | 0.0238 (7) | 0.0160 (7) | 0.0065 (7) | 0.0107 (7) | 0.0051 (6) |
O12 | 0.0421 (9) | 0.0244 (7) | 0.0177 (7) | −0.0053 (6) | 0.0086 (6) | 0.0031 (6) |
O15 | 0.0496 (10) | 0.0217 (7) | 0.0230 (8) | −0.0017 (6) | 0.0124 (7) | −0.0040 (6) |
C11 | 0.0172 (11) | 0.0243 (10) | 0.0144 (9) | 0.0003 (8) | 0.0024 (8) | −0.0003 (8) |
C12 | 0.0238 (11) | 0.0213 (10) | 0.0164 (9) | 0.0026 (8) | 0.0036 (8) | 0.0003 (8) |
C13 | 0.0245 (11) | 0.0230 (10) | 0.0191 (10) | 0.0008 (8) | 0.0037 (8) | 0.0032 (9) |
C14 | 0.0248 (11) | 0.0262 (10) | 0.0144 (9) | 0.0009 (8) | 0.0050 (8) | −0.0003 (8) |
C15 | 0.0217 (11) | 0.0202 (10) | 0.0215 (10) | −0.0037 (8) | 0.0048 (8) | −0.0053 (8) |
C16 | 0.0224 (11) | 0.0217 (10) | 0.0176 (10) | −0.0008 (8) | 0.0045 (8) | 0.0021 (8) |
C17 | 0.0190 (11) | 0.0229 (10) | 0.0172 (10) | 0.0015 (8) | 0.0024 (8) | −0.0012 (9) |
O21 | 0.0904 (14) | 0.0241 (8) | 0.0314 (9) | −0.0077 (8) | 0.0241 (9) | −0.0053 (7) |
O22 | 0.0454 (10) | 0.0315 (8) | 0.0198 (7) | 0.0027 (7) | 0.0117 (7) | −0.0001 (6) |
O23 | 0.0413 (9) | 0.0243 (7) | 0.0182 (7) | −0.0058 (7) | 0.0096 (6) | 0.0028 (6) |
O25 | 0.0605 (11) | 0.0184 (7) | 0.0224 (8) | −0.0014 (7) | 0.0129 (7) | −0.0007 (6) |
C21 | 0.0192 (11) | 0.0226 (10) | 0.0197 (10) | −0.0006 (8) | 0.0046 (8) | 0.0002 (8) |
C22 | 0.0230 (11) | 0.0196 (10) | 0.0220 (10) | −0.0035 (8) | 0.0033 (8) | −0.0029 (8) |
C23 | 0.0215 (11) | 0.0235 (10) | 0.0179 (10) | −0.0001 (8) | 0.0046 (8) | 0.0042 (8) |
C24 | 0.0269 (12) | 0.0210 (10) | 0.0181 (10) | 0.0011 (8) | 0.0054 (8) | −0.0013 (8) |
C25 | 0.0256 (11) | 0.0185 (10) | 0.0225 (10) | 0.0014 (8) | 0.0048 (8) | 0.0011 (8) |
C26 | 0.0232 (11) | 0.0235 (10) | 0.0186 (10) | 0.0023 (8) | 0.0048 (8) | 0.0043 (8) |
C27 | 0.0259 (12) | 0.0282 (12) | 0.0232 (11) | −0.0026 (9) | 0.0068 (9) | −0.0018 (9) |
N31 | 0.0255 (10) | 0.0270 (9) | 0.0153 (8) | −0.0013 (7) | 0.0063 (7) | −0.0032 (7) |
N32 | 0.0262 (10) | 0.0230 (8) | 0.0185 (8) | 0.0007 (7) | 0.0044 (7) | −0.0020 (7) |
C31 | 0.0222 (12) | 0.0296 (11) | 0.0218 (10) | −0.0002 (9) | 0.0023 (8) | 0.0020 (9) |
C32 | 0.0271 (13) | 0.0698 (16) | 0.0217 (11) | 0.0059 (11) | 0.0048 (10) | −0.0026 (11) |
C33 | 0.0259 (12) | 0.0260 (11) | 0.0274 (11) | 0.0070 (8) | 0.0053 (9) | −0.0015 (9) |
C34 | 0.0480 (15) | 0.0350 (12) | 0.0215 (11) | 0.0144 (11) | 0.0034 (10) | 0.0002 (10) |
C35 | 0.0335 (13) | 0.0257 (11) | 0.0228 (11) | −0.0059 (9) | 0.0086 (9) | −0.0008 (9) |
C36 | 0.0631 (17) | 0.0343 (12) | 0.0273 (12) | −0.0158 (11) | 0.0178 (11) | −0.0057 (10) |
N41 | 0.0273 (10) | 0.0250 (9) | 0.0175 (8) | 0.0001 (7) | 0.0068 (7) | −0.0030 (7) |
N42 | 0.0239 (10) | 0.0262 (9) | 0.0228 (9) | −0.0007 (7) | 0.0038 (7) | −0.0034 (7) |
C41 | 0.0231 (12) | 0.0332 (11) | 0.0320 (12) | −0.0022 (9) | 0.0070 (9) | −0.0021 (10) |
C42 | 0.0217 (12) | 0.0330 (11) | 0.0321 (12) | −0.0004 (9) | −0.0012 (9) | −0.0099 (10) |
C43 | 0.0317 (13) | 0.0263 (11) | 0.0283 (11) | −0.0075 (9) | 0.0100 (9) | −0.0025 (9) |
C44 | 0.0346 (13) | 0.0305 (11) | 0.0211 (11) | −0.0067 (9) | 0.0066 (9) | −0.0005 (9) |
C45 | 0.0361 (13) | 0.0310 (11) | 0.0235 (11) | 0.0090 (10) | 0.0012 (9) | 0.0003 (9) |
C46 | 0.0259 (12) | 0.0262 (11) | 0.0281 (11) | 0.0037 (9) | 0.0052 (9) | −0.0027 (9) |
O1 | 0.0370 (10) | 0.0317 (8) | 0.0274 (8) | 0.0038 (7) | 0.0059 (7) | −0.0060 (7) |
O2 | 0.0523 (11) | 0.0304 (8) | 0.0246 (8) | 0.0081 (7) | 0.0132 (8) | 0.0012 (7) |
Geometric parameters (Å, º) top
O11—C17 | 1.280 (2) | C31—H31A | 0.99 |
O13—C13 | 1.365 (2) | C31—H31B | 0.99 |
O13—H13 | 0.84 | C32—H32A | 0.99 |
O12—C17 | 1.251 (2) | C32—H32B | 0.99 |
O15—C15 | 1.361 (2) | C33—C34 | 1.532 (3) |
O15—H15 | 0.84 | C33—H33A | 0.99 |
C11—C12 | 1.391 (2) | C33—H33B | 0.99 |
C11—C16 | 1.395 (2) | C34—H34A | 0.99 |
C11—C17 | 1.507 (3) | C34—H34B | 0.99 |
C12—C13 | 1.391 (3) | C35—C36 | 1.527 (3) |
C12—H12 | 0.95 | C35—H35A | 0.99 |
C13—C14 | 1.390 (3) | C35—H35B | 0.99 |
C14—C15 | 1.386 (3) | C36—H36A | 0.99 |
C14—H14 | 0.95 | C36—H36B | 0.99 |
C15—C16 | 1.390 (2) | N41—C41 | 1.486 (2) |
C16—H16 | 0.95 | N41—C45 | 1.491 (2) |
O21—C27 | 1.229 (2) | N41—C43 | 1.493 (2) |
O22—C27 | 1.282 (2) | N41—H41 | 0.93 |
O23—C23 | 1.370 (2) | N42—C42 | 1.475 (2) |
O23—H23 | 0.84 | N42—C46 | 1.477 (2) |
O25—C25 | 1.364 (2) | N42—C44 | 1.480 (2) |
O25—H25 | 0.84 | C41—C42 | 1.529 (3) |
C21—C22 | 1.391 (2) | C41—H41A | 0.99 |
C21—C26 | 1.391 (2) | C41—H41B | 0.99 |
C21—C27 | 1.512 (3) | C42—H42A | 0.99 |
C22—C23 | 1.387 (2) | C42—H42B | 0.99 |
C22—H22 | 0.95 | C43—C44 | 1.529 (3) |
C23—C24 | 1.389 (2) | C43—H43A | 0.99 |
C24—C25 | 1.390 (3) | C43—H43B | 0.99 |
C24—H24 | 0.95 | C44—H44A | 0.99 |
C25—C26 | 1.391 (3) | C44—H44B | 0.99 |
C26—H26 | 0.95 | C45—C46 | 1.533 (3) |
N31—C33 | 1.495 (2) | C45—H45A | 0.99 |
N31—C35 | 1.497 (2) | C45—H45B | 0.99 |
N31—C31 | 1.498 (2) | C46—H46A | 0.99 |
N31—H31 | 0.93 | C46—H46B | 0.99 |
N32—C36 | 1.466 (3) | O1—H1A | 0.91 (2) |
N32—C32 | 1.469 (2) | O1—H1B | 0.91 (2) |
N32—C34 | 1.470 (2) | O2—H2A | 0.94 (2) |
C31—C32 | 1.526 (3) | O2—H2B | 0.90 (2) |
| | | |
C13—O13—H13 | 109.5 | C34—C33—H33A | 110.2 |
C15—O15—H15 | 109.5 | N31—C33—H33B | 110.2 |
C12—C11—C16 | 120.01 (17) | C34—C33—H33B | 110.2 |
C12—C11—C17 | 120.45 (16) | H33A—C33—H33B | 108.5 |
C16—C11—C17 | 119.54 (16) | N32—C34—C33 | 111.75 (15) |
C13—C12—C11 | 119.97 (17) | N32—C34—H34A | 109.3 |
C13—C12—H12 | 120.0 | C33—C34—H34A | 109.3 |
C11—C12—H12 | 120.0 | N32—C34—H34B | 109.3 |
O13—C13—C14 | 121.54 (16) | C33—C34—H34B | 109.3 |
O13—C13—C12 | 118.39 (16) | H34A—C34—H34B | 107.9 |
C14—C13—C12 | 120.06 (17) | N31—C35—C36 | 107.71 (15) |
C15—C14—C13 | 119.82 (17) | N31—C35—H35A | 110.2 |
C15—C14—H14 | 120.1 | C36—C35—H35A | 110.2 |
C13—C14—H14 | 120.1 | N31—C35—H35B | 110.2 |
O15—C15—C14 | 122.18 (17) | C36—C35—H35B | 110.2 |
O15—C15—C16 | 117.30 (16) | H35A—C35—H35B | 108.5 |
C14—C15—C16 | 120.52 (17) | N32—C36—C35 | 111.87 (16) |
C15—C16—C11 | 119.59 (17) | N32—C36—H36A | 109.2 |
C15—C16—H16 | 120.2 | C35—C36—H36A | 109.2 |
C11—C16—H16 | 120.2 | N32—C36—H36B | 109.2 |
O12—C17—O11 | 122.36 (17) | C35—C36—H36B | 109.2 |
O12—C17—C11 | 119.97 (16) | H36A—C36—H36B | 107.9 |
O11—C17—C11 | 117.67 (16) | C41—N41—C45 | 109.72 (15) |
C23—O23—H23 | 109.5 | C41—N41—C43 | 110.05 (15) |
C25—O25—H25 | 109.5 | C45—N41—C43 | 109.09 (16) |
C22—C21—C26 | 120.72 (17) | C41—N41—H41 | 109.3 |
C22—C21—C27 | 119.13 (16) | C45—N41—H41 | 109.3 |
C26—C21—C27 | 120.14 (17) | C43—N41—H41 | 109.3 |
C23—C22—C21 | 119.32 (17) | C42—N42—C46 | 109.30 (16) |
C23—C22—H22 | 120.3 | C42—N42—C44 | 108.20 (15) |
C21—C22—H22 | 120.3 | C46—N42—C44 | 107.75 (14) |
O23—C23—C22 | 122.59 (16) | N41—C41—C42 | 108.13 (16) |
O23—C23—C24 | 116.85 (16) | N41—C41—H41A | 110.1 |
C22—C23—C24 | 120.56 (17) | C42—C41—H41A | 110.1 |
C23—C24—C25 | 119.73 (17) | N41—C41—H41B | 110.1 |
C23—C24—H24 | 120.1 | C42—C41—H41B | 110.1 |
C25—C24—H24 | 120.1 | H41A—C41—H41B | 108.4 |
O25—C25—C24 | 121.99 (16) | N42—C42—C41 | 111.17 (15) |
O25—C25—C26 | 117.70 (16) | N42—C42—H42A | 109.4 |
C24—C25—C26 | 120.32 (17) | C41—C42—H42A | 109.4 |
C25—C26—C21 | 119.31 (17) | N42—C42—H42B | 109.4 |
C25—C26—H26 | 120.3 | C41—C42—H42B | 109.4 |
C21—C26—H26 | 120.3 | H42A—C42—H42B | 108.0 |
O21—C27—O22 | 124.42 (18) | N41—C43—C44 | 108.56 (14) |
O21—C27—C21 | 120.01 (18) | N41—C43—H43A | 110.0 |
O22—C27—C21 | 115.57 (16) | C44—C43—H43A | 110.0 |
C33—N31—C35 | 109.46 (14) | N41—C43—H43B | 110.0 |
C33—N31—C31 | 109.24 (15) | C44—C43—H43B | 110.0 |
C35—N31—C31 | 110.71 (15) | H43A—C43—H43B | 108.4 |
C33—N31—H31 | 109.1 | N42—C44—C43 | 110.72 (16) |
C35—N31—H31 | 109.1 | N42—C44—H44A | 109.5 |
C31—N31—H31 | 109.1 | C43—C44—H44A | 109.5 |
C36—N32—C32 | 108.69 (16) | N42—C44—H44B | 109.5 |
C36—N32—C34 | 108.05 (17) | C43—C44—H44B | 109.5 |
C32—N32—C34 | 108.90 (16) | H44A—C44—H44B | 108.1 |
N31—C31—C32 | 107.89 (15) | N41—C45—C46 | 107.98 (15) |
N31—C31—H31A | 110.1 | N41—C45—H45A | 110.1 |
C32—C31—H31A | 110.1 | C46—C45—H45A | 110.1 |
N31—C31—H31B | 110.1 | N41—C45—H45B | 110.1 |
C32—C31—H31B | 110.1 | C46—C45—H45B | 110.1 |
H31A—C31—H31B | 108.4 | H45A—C45—H45B | 108.4 |
N32—C32—C31 | 111.67 (17) | N42—C46—C45 | 111.23 (15) |
N32—C32—H32A | 109.3 | N42—C46—H46A | 109.4 |
C31—C32—H32A | 109.3 | C45—C46—H46A | 109.4 |
N32—C32—H32B | 109.3 | N42—C46—H46B | 109.4 |
C31—C32—H32B | 109.3 | C45—C46—H46B | 109.4 |
H32A—C32—H32B | 107.9 | H46A—C46—H46B | 108.0 |
N31—C33—C34 | 107.56 (15) | H1A—O1—H1B | 105 (2) |
N31—C33—H33A | 110.2 | H2A—O2—H2B | 108 (2) |
| | | |
C16—C11—C12—C13 | 1.2 (3) | C26—C21—C27—O22 | 8.2 (3) |
C17—C11—C12—C13 | −179.36 (17) | C33—N31—C31—C32 | 60.58 (19) |
C11—C12—C13—O13 | 178.06 (16) | C35—N31—C31—C32 | −60.0 (2) |
C11—C12—C13—C14 | −1.0 (3) | C36—N32—C32—C31 | 58.5 (2) |
O13—C13—C14—C15 | −179.45 (18) | C34—N32—C32—C31 | −59.0 (2) |
C12—C13—C14—C15 | −0.4 (3) | N31—C31—C32—N32 | 0.6 (2) |
C13—C14—C15—O15 | −177.42 (17) | C35—N31—C33—C34 | 59.2 (2) |
C13—C14—C15—C16 | 1.7 (3) | C31—N31—C33—C34 | −62.15 (19) |
O15—C15—C16—C11 | 177.65 (17) | C36—N32—C34—C33 | −60.6 (2) |
C14—C15—C16—C11 | −1.5 (3) | C32—N32—C34—C33 | 57.2 (2) |
C12—C11—C16—C15 | 0.1 (3) | N31—C33—C34—N32 | 2.5 (2) |
C17—C11—C16—C15 | −179.41 (17) | C33—N31—C35—C36 | −62.2 (2) |
C12—C11—C17—O12 | 165.34 (17) | C31—N31—C35—C36 | 58.3 (2) |
C16—C11—C17—O12 | −15.2 (3) | C32—N32—C36—C35 | −60.3 (2) |
C12—C11—C17—O11 | −14.1 (3) | C34—N32—C36—C35 | 57.7 (2) |
C16—C11—C17—O11 | 165.36 (17) | N31—C35—C36—N32 | 2.4 (3) |
C26—C21—C22—C23 | −1.8 (3) | C45—N41—C41—C42 | 65.9 (2) |
C27—C21—C22—C23 | 178.83 (17) | C43—N41—C41—C42 | −54.1 (2) |
C21—C22—C23—O23 | −178.29 (17) | C46—N42—C42—C41 | −52.3 (2) |
C21—C22—C23—C24 | 1.6 (3) | C44—N42—C42—C41 | 64.8 (2) |
O23—C23—C24—C25 | −179.91 (17) | N41—C41—C42—N42 | −9.7 (2) |
C22—C23—C24—C25 | 0.2 (3) | C41—N41—C43—C44 | 64.5 (2) |
C23—C24—C25—O25 | 177.90 (17) | C45—N41—C43—C44 | −55.9 (2) |
C23—C24—C25—C26 | −1.8 (3) | C42—N42—C44—C43 | −53.9 (2) |
O25—C25—C26—C21 | −178.18 (17) | C46—N42—C44—C43 | 64.2 (2) |
C24—C25—C26—C21 | 1.5 (3) | N41—C43—C44—N42 | −8.2 (2) |
C22—C21—C26—C25 | 0.3 (3) | C41—N41—C45—C46 | −55.9 (2) |
C27—C21—C26—C25 | 179.62 (17) | C43—N41—C45—C46 | 64.7 (2) |
C22—C21—C27—O21 | 7.5 (3) | C42—N42—C46—C45 | 62.4 (2) |
C26—C21—C27—O21 | −171.86 (18) | C44—N42—C46—C45 | −54.9 (2) |
C22—C21—C27—O22 | −172.46 (17) | N41—C45—C46—N42 | −7.6 (2) |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
O13—H13···N32i | 0.84 | 1.93 | 2.750 (2) | 167 |
O15—H15···O1 | 0.84 | 1.82 | 2.656 (2) | 175 |
O23—H23···O12ii | 0.84 | 1.85 | 2.684 (2) | 175 |
O25—H25···O2 | 0.84 | 1.81 | 2.649 (2) | 175 |
N31—H31···O11 | 0.93 | 1.84 | 2.750 (2) | 165 |
N41—H41···O22 | 0.93 | 1.65 | 2.575 (2) | 173 |
O1—H1A···O22i | 0.91 | 1.85 | 2.743 (2) | 167 |
O1—H1B···O11iii | 0.91 | 1.92 | 2.834 (2) | 173 |
O2—H2A···N42iv | 0.94 | 1.89 | 2.822 (2) | 173 |
O2—H2B···O11 | 0.90 | 1.96 | 2.827 (2) | 163 |
Symmetry codes: (i) x, −y+1/2, z−1/2; (ii) x, y+1, z; (iii) −x+1, y−1/2, −z+1/2; (iv) x, −y+3/2, z−1/2. |
(2) Piperazinee–3,5-dihydroxybenzoic acid–water (1/2/4)
top
Crystal data top
C4H12N2·2(C7H5O4)·4(H2O) | Z = 1 |
Mr = 466.44 | F(000) = 248 |
Triclinic, P1 | Dx = 1.426 Mg m−3 |
a = 7.7793 (3) Å | Mo Kα radiation, λ = 0.71073 Å |
b = 8.1656 (3) Å | Cell parameters from 5313 reflections |
c = 9.0662 (4) Å | θ = 2.6–27.4° |
α = 104.981 (2)° | µ = 0.12 mm−1 |
β = 97.134 (2)° | T = 100 K |
γ = 98.066 (2)° | Block, colourless |
V = 543.02 (4) Å3 | 0.36 × 0.35 × 0.25 mm |
Data collection top
Kappa-CCD diffractometer | 2430 independent reflections |
Radiation source: fine-focus sealed X-ray tube | 2133 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.022 |
ϕ scans and ω scans with κ offsets | θmax = 27.4°, θmin = 2.6° |
Absorption correction: multi-scan DENZO-SMN (Otwinowski & Minor, 1997) | h = 0→10 |
Tmin = 0.958, Tmax = 0.971 | k = −10→10 |
5313 measured reflections | l = −11→11 |
Refinement top
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.037 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.096 | H-atom parameters constrained |
S = 1.06 | w = 1/[σ2(Fo2) + (0.0343P)2 + 0.2285P] where P = (Fo2 + 2Fc2)/3 |
2430 reflections | (Δ/σ)max < 0.001 |
169 parameters | Δρmax = 0.37 e Å−3 |
4 restraints | Δρmin = −0.24 e Å−3 |
Crystal data top
C4H12N2·2(C7H5O4)·4(H2O) | γ = 98.066 (2)° |
Mr = 466.44 | V = 543.02 (4) Å3 |
Triclinic, P1 | Z = 1 |
a = 7.7793 (3) Å | Mo Kα radiation |
b = 8.1656 (3) Å | µ = 0.12 mm−1 |
c = 9.0662 (4) Å | T = 100 K |
α = 104.981 (2)° | 0.36 × 0.35 × 0.25 mm |
β = 97.134 (2)° | |
Data collection top
Kappa-CCD diffractometer | 2430 independent reflections |
Absorption correction: multi-scan DENZO-SMN (Otwinowski & Minor, 1997) | 2133 reflections with I > 2σ(I) |
Tmin = 0.958, Tmax = 0.971 | Rint = 0.022 |
5313 measured reflections | |
Refinement top
R[F2 > 2σ(F2)] = 0.037 | 4 restraints |
wR(F2) = 0.096 | H-atom parameters constrained |
S = 1.06 | Δρmax = 0.37 e Å−3 |
2430 reflections | Δρmin = −0.24 e Å−3 |
169 parameters | |
Special details top
Experimental. The program DENZO-SMN (Otwinowski & Minor, 1997) uses a scaling algorithm
(Fox & Holmes, 1966) which effectively corrects for absorption effects. High
redundancy data were used in the scaling program hence the 'multi-scan' code
word was used. No transmission coefficients are available from the program
(only scale factors for each frame). The scale factors in the experimental
table are calculated from the 'size' command in the SHELXL97 input
file. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | Occ. (<1) |
O11 | 0.31130 (13) | 0.03684 (11) | 0.19272 (10) | 0.0222 (2) | |
O12 | 0.22143 (13) | 0.07173 (11) | −0.03919 (10) | 0.0233 (2) | |
O13 | −0.09415 (12) | −0.53185 (11) | −0.33656 (10) | 0.0202 (2) | |
O15 | 0.33241 (11) | −0.59393 (11) | 0.06812 (10) | 0.0188 (2) | |
C11 | 0.20747 (16) | −0.21402 (15) | −0.02008 (14) | 0.0158 (2) | |
C12 | 0.08083 (16) | −0.28557 (15) | −0.15306 (14) | 0.0161 (2) | |
C13 | 0.03720 (15) | −0.46389 (15) | −0.21061 (13) | 0.0155 (2) | |
C14 | 0.12236 (16) | −0.57084 (15) | −0.14087 (14) | 0.0155 (2) | |
C15 | 0.24868 (15) | −0.49737 (15) | −0.00874 (14) | 0.0148 (2) | |
C16 | 0.29204 (16) | −0.31895 (15) | 0.05212 (14) | 0.0161 (2) | |
C17 | 0.24984 (16) | −0.02119 (15) | 0.04836 (14) | 0.0173 (3) | |
N1 | 0.39363 (13) | 0.36987 (13) | 0.37028 (11) | 0.0162 (2) | |
C2 | 0.36286 (17) | 0.37976 (16) | 0.53142 (14) | 0.0199 (3) | |
C3 | 0.41841 (16) | 0.56356 (16) | 0.63309 (14) | 0.0196 (3) | |
O1 | 0.1731 (4) | −0.1323 (2) | 0.40019 (15) | 0.0350 (7) | 0.823 (6) |
O1A | 0.2602 (15) | −0.1591 (10) | 0.4031 (9) | 0.034* | 0.177 (6) |
O2 | 0.35406 (16) | 0.02471 (16) | −0.31268 (13) | 0.0325 (3) | 0.912 (2) |
O2A | 0.1675 (16) | 0.0368 (15) | −0.3552 (14) | 0.032* | 0.088 (2) |
H13 | −0.1194 | −0.6391 | −0.3523 | 0.030* | |
H15 | 0.2893 | −0.6987 | 0.0278 | 0.028* | |
H12 | 0.0253 | −0.2136 | −0.2035 | 0.019* | |
H14 | 0.0943 | −0.6925 | −0.1832 | 0.019* | |
H16 | 0.3787 | −0.2693 | 0.1423 | 0.019* | |
H1C | 0.3227 | 0.4333 | 0.3285 | 0.019* | |
H1D | 0.3634 | 0.2572 | 0.3104 | 0.019* | |
H2C | 0.4312 | 0.3038 | 0.5737 | 0.024* | |
H2D | 0.2365 | 0.3396 | 0.5304 | 0.024* | |
H3A | 0.3425 | 0.6374 | 0.5962 | 0.024* | |
H3B | 0.4033 | 0.5681 | 0.7408 | 0.024* | |
H1A | 0.227 (3) | −0.079 (3) | 0.4903 (15) | 0.050 (3)* | 0.823 (6) |
H1B | 0.216 (3) | −0.088 (3) | 0.335 (2) | 0.050 (3)* | 0.823 (6) |
H2A | 0.4552 (17) | 0.008 (3) | −0.282 (2) | 0.050 (3)* | 0.912 (2) |
H2B | 0.293 (3) | 0.030 (3) | −0.241 (2) | 0.050 (3)* | 0.912 (2) |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
O11 | 0.0312 (5) | 0.0135 (4) | 0.0176 (4) | 0.0018 (4) | −0.0012 (4) | 0.0008 (3) |
O12 | 0.0350 (5) | 0.0127 (4) | 0.0214 (5) | 0.0037 (4) | 0.0007 (4) | 0.0055 (4) |
O13 | 0.0214 (5) | 0.0164 (4) | 0.0183 (5) | 0.0016 (3) | −0.0056 (4) | 0.0021 (4) |
O15 | 0.0225 (5) | 0.0129 (4) | 0.0194 (5) | 0.0031 (3) | −0.0035 (4) | 0.0050 (4) |
C11 | 0.0177 (6) | 0.0129 (5) | 0.0158 (6) | 0.0012 (4) | 0.0036 (5) | 0.0026 (5) |
C12 | 0.0178 (6) | 0.0155 (6) | 0.0158 (6) | 0.0047 (4) | 0.0021 (5) | 0.0053 (5) |
C13 | 0.0148 (6) | 0.0168 (6) | 0.0133 (5) | 0.0015 (4) | 0.0016 (4) | 0.0024 (5) |
C14 | 0.0167 (6) | 0.0124 (5) | 0.0163 (6) | 0.0018 (4) | 0.0031 (5) | 0.0027 (4) |
C15 | 0.0151 (6) | 0.0150 (6) | 0.0157 (6) | 0.0039 (4) | 0.0034 (5) | 0.0058 (5) |
C16 | 0.0171 (6) | 0.0153 (6) | 0.0140 (6) | 0.0011 (4) | 0.0002 (4) | 0.0030 (5) |
C17 | 0.0188 (6) | 0.0135 (6) | 0.0187 (6) | 0.0025 (4) | 0.0025 (5) | 0.0033 (5) |
N1 | 0.0182 (5) | 0.0141 (5) | 0.0139 (5) | 0.0019 (4) | −0.0017 (4) | 0.0025 (4) |
C2 | 0.0218 (6) | 0.0214 (6) | 0.0147 (6) | −0.0026 (5) | 0.0010 (5) | 0.0060 (5) |
C3 | 0.0170 (6) | 0.0241 (6) | 0.0149 (6) | 0.0018 (5) | 0.0014 (5) | 0.0021 (5) |
O1 | 0.0548 (16) | 0.0218 (7) | 0.0179 (6) | −0.0122 (7) | −0.0007 (6) | 0.0006 (5) |
O2 | 0.0316 (7) | 0.0419 (7) | 0.0205 (6) | 0.0028 (5) | −0.0012 (5) | 0.0073 (5) |
Geometric parameters (Å, º) top
O11—C17 | 1.2753 (15) | N1—C2 | 1.4931 (15) |
O12—C17 | 1.2527 (15) | N1—C3i | 1.4937 (15) |
O13—C13 | 1.3709 (14) | N1—H1C | 0.92 |
O13—H13 | 0.84 | N1—H1D | 0.92 |
O15—C15 | 1.3590 (14) | C2—C3 | 1.5142 (17) |
O15—H15 | 0.84 | C2—H2C | 0.99 |
C11—C16 | 1.3917 (16) | C2—H2D | 0.99 |
C11—C12 | 1.3945 (17) | C3—N1i | 1.4937 (15) |
C11—C17 | 1.5071 (16) | C3—H3A | 0.99 |
C12—C13 | 1.3900 (16) | C3—H3B | 0.99 |
C12—H12 | 0.95 | O1—O1A | 0.740 (10) |
C13—C14 | 1.3947 (16) | O1—H1A | 0.845 (10) |
C14—C15 | 1.3897 (17) | O1—H1B | 0.845 (10) |
C14—H14 | 0.95 | O2—O2A | 1.478 (12) |
C15—C16 | 1.3932 (16) | O2—H2A | 0.845 (10) |
C16—H16 | 0.95 | O2—H2B | 0.845 (10) |
| | | |
C13—O13—H13 | 109.5 | O11—C17—C11 | 117.55 (10) |
C15—O15—H15 | 109.5 | C2—N1—C3i | 111.57 (9) |
C16—C11—C12 | 120.70 (11) | C2—N1—H1C | 109.3 |
C16—C11—C17 | 119.67 (11) | C3i—N1—H1C | 109.3 |
C12—C11—C17 | 119.61 (11) | C2—N1—H1D | 109.3 |
C13—C12—C11 | 118.93 (11) | C3i—N1—H1D | 109.3 |
C13—C12—H12 | 120.5 | H1C—N1—H1D | 108.0 |
C11—C12—H12 | 120.5 | N1—C2—C3 | 109.99 (10) |
O13—C13—C12 | 118.06 (10) | N1—C2—H2C | 109.7 |
O13—C13—C14 | 120.86 (10) | C3—C2—H2C | 109.7 |
C12—C13—C14 | 121.07 (11) | N1—C2—H2D | 109.7 |
C15—C14—C13 | 119.21 (11) | C3—C2—H2D | 109.7 |
C15—C14—H14 | 120.4 | H2C—C2—H2D | 108.2 |
C13—C14—H14 | 120.4 | N1i—C3—C2 | 110.59 (10) |
O15—C15—C14 | 122.32 (10) | N1i—C3—H3A | 109.5 |
O15—C15—C16 | 117.16 (10) | C2—C3—H3A | 109.5 |
C14—C15—C16 | 120.51 (11) | N1i—C3—H3B | 109.5 |
C11—C16—C15 | 119.54 (11) | C2—C3—H3B | 109.5 |
C11—C16—H16 | 120.2 | H3A—C3—H3B | 108.1 |
C15—C16—H16 | 120.2 | H1A—O1—H1B | 109 (2) |
O12—C17—O11 | 124.18 (11) | H2A—O2—H2B | 110 (2) |
O12—C17—C11 | 118.26 (11) | | |
| | | |
C16—C11—C12—C13 | 1.48 (17) | C17—C11—C16—C15 | 178.05 (11) |
C17—C11—C12—C13 | −176.99 (11) | O15—C15—C16—C11 | −178.62 (10) |
C11—C12—C13—O13 | 176.60 (10) | C14—C15—C16—C11 | 0.19 (18) |
C11—C12—C13—C14 | −2.34 (18) | C16—C11—C17—O12 | 156.59 (12) |
O13—C13—C14—C15 | −176.79 (10) | C12—C11—C17—O12 | −24.92 (17) |
C12—C13—C14—C15 | 2.13 (18) | C16—C11—C17—O11 | −23.96 (17) |
C13—C14—C15—O15 | 177.71 (11) | C12—C11—C17—O11 | 154.53 (11) |
C13—C14—C15—C16 | −1.03 (17) | C3i—N1—C2—C3 | 56.90 (14) |
C12—C11—C16—C15 | −0.42 (18) | N1—C2—C3—N1i | −56.33 (14) |
Symmetry code: (i) −x+1, −y+1, −z+1. |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1A···O2ii | 0.84 (2) | 1.85 (2) | 2.694 (2) | 176 (2) |
O1—H1B···O11 | 0.85 (2) | 1.99 (2) | 2.834 (2) | 175 (2) |
O2—H2A···O11iii | 0.84 (2) | 2.02 (2) | 2.856 (2) | 175 (2) |
O2—H2B···O12 | 0.85 (2) | 1.94 (2) | 2.759 (2) | 163 (2) |
O13—H13···O1iv | 0.84 | 1.78 | 2.618 (2) | 176 |
O15—H15···O12v | 0.84 | 1.79 | 2.627 (2) | 172 |
N1—H1C···O13vi | 0.92 | 2.05 | 2.858 (2) | 145 |
N1—H1D···O11 | 0.92 | 1.80 | 2.718 (2) | 178 |
Symmetry codes: (ii) x, y, z+1; (iii) −x+1, −y, −z; (iv) −x, −y−1, −z; (v) x, y−1, z; (vi) −x, −y, −z. |
(3) 1,2-Diaminoethane–3,5-dihydroxybenzoic acid–water (1/2/2)
top
Crystal data top
C2H10N2·2(C7H5O4)·2(H2O) | F(000) = 428 |
Mr = 404.37 | Dx = 1.457 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
a = 8.0804 (3) Å | Cell parameters from 2104 reflections |
b = 10.6021 (6) Å | θ = 2.7–27.5° |
c = 11.3988 (6) Å | µ = 0.12 mm−1 |
β = 109.243 (3)° | T = 100 K |
V = 921.97 (8) Å3 | Block, colourless |
Z = 2 | 0.20 × 0.20 × 0.13 mm |
Data collection top
Kappa-CCD diffractometer | 2104 independent reflections |
Radiation source: fine-focus sealed X-ray tube | 1756 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.024 |
ϕ scans and ω scans with κ offsets | θmax = 27.5°, θmin = 2.7° |
Absorption correction: multi-scan DENZO-SMN (Otwinowski & Minor, 1997) | h = 0→10 |
Tmin = 0.976, Tmax = 0.984 | k = 0→13 |
21623 measured reflections | l = −14→13 |
Refinement top
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.041 | H-atom parameters constrained |
wR(F2) = 0.113 | w = 1/[σ2(Fo2) + (0.0527P)2 + 0.3193P] where P = (Fo2 + 2Fc2)/3 |
S = 1.06 | (Δ/σ)max = 0.015 |
2104 reflections | Δρmax = 0.26 e Å−3 |
146 parameters | Δρmin = −0.25 e Å−3 |
3 restraints | Extinction correction: SHELXL, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.021 (6) |
Crystal data top
C2H10N2·2(C7H5O4)·2(H2O) | V = 921.97 (8) Å3 |
Mr = 404.37 | Z = 2 |
Monoclinic, P21/c | Mo Kα radiation |
a = 8.0804 (3) Å | µ = 0.12 mm−1 |
b = 10.6021 (6) Å | T = 100 K |
c = 11.3988 (6) Å | 0.20 × 0.20 × 0.13 mm |
β = 109.243 (3)° | |
Data collection top
Kappa-CCD diffractometer | 2104 independent reflections |
Absorption correction: multi-scan DENZO-SMN (Otwinowski & Minor, 1997) | 1756 reflections with I > 2σ(I) |
Tmin = 0.976, Tmax = 0.984 | Rint = 0.024 |
21623 measured reflections | |
Refinement top
R[F2 > 2σ(F2)] = 0.041 | 3 restraints |
wR(F2) = 0.113 | H-atom parameters constrained |
S = 1.06 | Δρmax = 0.26 e Å−3 |
2104 reflections | Δρmin = −0.25 e Å−3 |
146 parameters | |
Special details top
Experimental. The program DENZO-SMN (Otwinowski & Minor, 1997) uses a scaling algorithm
(Fox & Holmes, 1966) which effectively corrects for absorption effects. High
redundancy data were used in the scaling program hence the 'multi-scan' code
word was used. No transmission coefficients are available from the program
(only scale factors for each frame). The scale factors in the experimental
table are calculated from the 'size' command in the SHELXL97 input
file. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | Occ. (<1) |
N1 | 0.54428 (15) | 0.61096 (11) | 0.63631 (11) | 0.0211 (3) | |
C1 | 0.44966 (18) | 0.51431 (14) | 0.54434 (13) | 0.0230 (3) | |
O5 | 0.18734 (12) | 0.56858 (10) | 1.25780 (9) | 0.0225 (3) | |
O2 | 0.35831 (13) | 0.62042 (10) | 0.79721 (9) | 0.0249 (3) | |
O3 | −0.21720 (12) | 0.71640 (10) | 0.86948 (9) | 0.0233 (3) | |
O1 | 0.54408 (12) | 0.69042 (10) | 0.97736 (9) | 0.0237 (3) | |
C11 | 0.24974 (16) | 0.64972 (13) | 0.96525 (12) | 0.0180 (3) | |
C12 | 0.07983 (17) | 0.68039 (13) | 0.89140 (12) | 0.0186 (3) | |
C13 | −0.05313 (17) | 0.68038 (13) | 0.94391 (12) | 0.0179 (3) | |
C14 | −0.01931 (17) | 0.64522 (13) | 1.06687 (13) | 0.0183 (3) | |
C15 | 0.15011 (18) | 0.61045 (12) | 1.13835 (13) | 0.0181 (3) | |
C16 | 0.28684 (17) | 0.61580 (13) | 1.08937 (13) | 0.0190 (3) | |
C17 | 0.39427 (17) | 0.65316 (13) | 0.90906 (13) | 0.0190 (3) | |
O11 | −0.0887 (3) | 0.9669 (2) | 0.8267 (2) | 0.0361 (7) | 0.874 (6) |
O11A | −0.022 (3) | 1.014 (2) | 0.866 (2) | 0.037* | 0.075 (6) |
O11B | −0.037 (3) | 1.009 (2) | 0.934 (2) | 0.037* | 0.053 (3) |
H1A | 0.6546 | 0.5832 | 0.6780 | 0.032* | |
H1B | 0.4860 | 0.6247 | 0.6912 | 0.032* | |
H1C | 0.5502 | 0.6841 | 0.5962 | 0.032* | |
H1D | 0.3310 | 0.5455 | 0.4968 | 0.028* | |
H1E | 0.4368 | 0.4362 | 0.5882 | 0.028* | |
H5 | 0.0935 | 0.5572 | 1.2729 | 0.034* | |
H3 | −0.2891 | 0.7053 | 0.9075 | 0.035* | |
H12 | 0.0549 | 0.7011 | 0.8062 | 0.022* | |
H14 | −0.1109 | 0.6449 | 1.1019 | 0.022* | |
H16 | 0.4035 | 0.5966 | 1.1398 | 0.023* | |
H111 | −0.135 (3) | 0.9019 (15) | 0.843 (2) | 0.056* | 0.874 (6) |
H112 | −0.164 (2) | 1.0180 (19) | 0.785 (2) | 0.056* | 0.874 (6) |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
N1 | 0.0194 (6) | 0.0279 (7) | 0.0169 (6) | 0.0021 (5) | 0.0072 (5) | −0.0001 (5) |
C1 | 0.0214 (7) | 0.0299 (8) | 0.0186 (7) | −0.0005 (6) | 0.0079 (6) | −0.0023 (6) |
O5 | 0.0195 (5) | 0.0303 (6) | 0.0192 (5) | 0.0031 (4) | 0.0085 (4) | 0.0041 (4) |
O2 | 0.0220 (5) | 0.0333 (6) | 0.0231 (6) | −0.0017 (4) | 0.0124 (4) | −0.0034 (4) |
O3 | 0.0139 (5) | 0.0353 (6) | 0.0218 (5) | 0.0031 (4) | 0.0073 (4) | 0.0051 (4) |
O1 | 0.0154 (5) | 0.0315 (6) | 0.0259 (5) | −0.0016 (4) | 0.0091 (4) | −0.0039 (4) |
C11 | 0.0158 (6) | 0.0186 (7) | 0.0215 (7) | −0.0008 (5) | 0.0088 (5) | −0.0029 (5) |
C12 | 0.0183 (6) | 0.0204 (7) | 0.0180 (7) | −0.0008 (5) | 0.0071 (5) | 0.0005 (5) |
C13 | 0.0142 (6) | 0.0183 (7) | 0.0209 (7) | 0.0007 (5) | 0.0052 (5) | −0.0003 (5) |
C14 | 0.0162 (6) | 0.0206 (7) | 0.0207 (7) | −0.0008 (5) | 0.0096 (5) | −0.0013 (5) |
C15 | 0.0199 (6) | 0.0173 (7) | 0.0177 (7) | −0.0002 (5) | 0.0070 (5) | −0.0011 (5) |
C16 | 0.0149 (6) | 0.0210 (7) | 0.0205 (7) | 0.0012 (5) | 0.0052 (5) | −0.0010 (5) |
C17 | 0.0178 (6) | 0.0192 (7) | 0.0221 (7) | 0.0021 (5) | 0.0094 (5) | 0.0011 (5) |
O11 | 0.0305 (10) | 0.0369 (11) | 0.0503 (11) | 0.0144 (9) | 0.0260 (9) | 0.0189 (9) |
Geometric parameters (Å, º) top
N1—C1 | 1.4850 (18) | C11—C17 | 1.5061 (18) |
N1—H1A | 0.9100 | C12—C13 | 1.3916 (18) |
N1—H1B | 0.9100 | C12—H12 | 0.9500 |
N1—H1C | 0.9100 | C13—C14 | 1.3877 (19) |
C1—C1i | 1.523 (3) | C14—C15 | 1.3923 (19) |
C1—H1D | 0.9900 | C14—H14 | 0.9500 |
C1—H1E | 0.9900 | C15—C16 | 1.3937 (18) |
O5—C15 | 1.3679 (16) | C16—H16 | 0.9500 |
O5—H5 | 0.8400 | O11—O11A | 0.76 (3) |
O2—C17 | 1.2595 (17) | O11—O11B | 1.23 (3) |
O3—C13 | 1.3718 (15) | O11—H111 | 0.836 (5) |
O3—H3 | 0.8400 | O11—H112 | 0.836 (5) |
O1—C17 | 1.2674 (17) | O11A—O11B | 0.82 (3) |
C11—C12 | 1.3920 (19) | O11A—H112 | 1.21 (3) |
C11—C16 | 1.3933 (19) | O11B—O11Bii | 1.45 (5) |
| | | |
C1—N1—H1A | 109.5 | C13—C14—H14 | 120.3 |
C1—N1—H1B | 109.5 | C15—C14—H14 | 120.3 |
H1A—N1—H1B | 109.5 | O5—C15—C14 | 121.31 (12) |
C1—N1—H1C | 109.5 | O5—C15—C16 | 117.95 (12) |
H1A—N1—H1C | 109.5 | C14—C15—C16 | 120.74 (13) |
H1B—N1—H1C | 109.5 | C11—C16—C15 | 118.92 (12) |
N1—C1—C1i | 110.05 (14) | C11—C16—H16 | 120.5 |
N1—C1—H1D | 109.7 | C15—C16—H16 | 120.5 |
C1i—C1—H1D | 109.7 | O2—C17—O1 | 124.24 (12) |
N1—C1—H1E | 109.7 | O2—C17—C11 | 118.11 (12) |
C1i—C1—H1E | 109.7 | O1—C17—C11 | 117.64 (12) |
H1D—C1—H1E | 108.2 | O11A—O11—O11B | 40.3 (18) |
C15—O5—H5 | 109.5 | O11A—O11—H111 | 133 (3) |
C13—O3—H3 | 109.5 | O11B—O11—H111 | 96 (2) |
C12—C11—C16 | 120.91 (12) | O11A—O11—H112 | 99 (2) |
C12—C11—C17 | 119.06 (12) | O11B—O11—H112 | 106 (2) |
C16—C11—C17 | 120.04 (12) | H111—O11—H112 | 111 (3) |
C13—C12—C11 | 119.16 (12) | O11—O11A—O11B | 103 (4) |
C13—C12—H12 | 120.4 | O11—O11A—H112 | 42.8 (16) |
C11—C12—H12 | 120.4 | O11B—O11A—H112 | 109 (3) |
O3—C13—C14 | 121.87 (12) | O11A—O11B—O11 | 37 (3) |
O3—C13—C12 | 117.37 (12) | O11A—O11B—O11Bii | 149 (4) |
C14—C13—C12 | 120.76 (12) | O11—O11B—O11Bii | 151 (3) |
C13—C14—C15 | 119.38 (12) | | |
| | | |
C16—C11—C12—C13 | 1.8 (2) | C17—C11—C16—C15 | −178.50 (12) |
C17—C11—C12—C13 | −178.38 (12) | O5—C15—C16—C11 | 175.58 (12) |
C11—C12—C13—O3 | 177.25 (12) | C14—C15—C16—C11 | −3.6 (2) |
C11—C12—C13—C14 | −2.7 (2) | C12—C11—C17—O2 | −35.31 (19) |
O3—C13—C14—C15 | −179.51 (12) | C16—C11—C17—O2 | 144.49 (14) |
C12—C13—C14—C15 | 0.4 (2) | C12—C11—C17—O1 | 143.87 (14) |
C13—C14—C15—O5 | −176.39 (12) | C16—C11—C17—O1 | −36.34 (19) |
C13—C14—C15—C16 | 2.8 (2) | O11—O11A—O11B—O11Bii | 128 (7) |
C12—C11—C16—C15 | 1.3 (2) | O11A—O11—O11B—O11Bii | −123 (7) |
Symmetry codes: (i) −x+1, −y+1, −z+1; (ii) −x, −y+2, −z+2. |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
O3—H3···O1iii | 0.84 | 1.78 | 2.622 (2) | 175 |
O5—H5···O11iv | 0.84 | 1.79 | 2.625 (3) | 172 |
O11—H111···O3 | 0.83 | 2.13 | 2.950 (2) | 168 |
O11—H112···O2v | 0.84 | 1.88 | 2.713 (2) | 171 |
N1—H1A···O5vi | 0.91 | 2.03 | 2.839 (2) | 147 |
N1—H1B···O2 | 0.91 | 1.83 | 2.729 (2) | 169 |
N1—H1C···O1vii | 0.91 | 1.89 | 2.778 (2) | 166 |
Symmetry codes: (iii) x−1, y, z; (iv) x, −y+3/2, z+1/2; (v) −x, y+1/2, −z+3/2; (vi) −x+1, −y+1, −z+2; (vii) x, −y+3/2, z−1/2. |
Experimental details
| (1) | (2) | (3) |
Crystal data |
Chemical formula | C6H13N2·C7H5O4·H2O | C4H12N2·2(C7H5O4)·4(H2O) | C2H10N2·2(C7H5O4)·2(H2O) |
Mr | 284.31 | 466.44 | 404.37 |
Crystal system, space group | Monoclinic, P21/c | Triclinic, P1 | Monoclinic, P21/c |
Temperature (K) | 100 | 100 | 100 |
a, b, c (Å) | 9.4478 (4), 11.7644 (4), 25.9024 (12) | 7.7793 (3), 8.1656 (3), 9.0662 (4) | 8.0804 (3), 10.6021 (6), 11.3988 (6) |
α, β, γ (°) | 90, 101.969 (2), 90 | 104.981 (2), 97.134 (2), 98.066 (2) | 90, 109.243 (3), 90 |
V (Å3) | 2816.4 (2) | 543.02 (4) | 921.97 (8) |
Z | 8 | 1 | 2 |
Radiation type | Mo Kα | Mo Kα | Mo Kα |
µ (mm−1) | 0.10 | 0.12 | 0.12 |
Crystal size (mm) | 0.30 × 0.25 × 0.13 | 0.36 × 0.35 × 0.25 | 0.20 × 0.20 × 0.13 |
|
Data collection |
Diffractometer | Kappa-CCD diffractometer | Kappa-CCD diffractometer | Kappa-CCD diffractometer |
Absorption correction | Multi-scan DENZO-SMN (Otwinowski & Minor, 1997) | Multi-scan DENZO-SMN (Otwinowski & Minor, 1997) | Multi-scan DENZO-SMN (Otwinowski & Minor, 1997) |
Tmin, Tmax | 0.970, 0.987 | 0.958, 0.971 | 0.976, 0.984 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 15105, 6382, 3976 | 5313, 2430, 2133 | 21623, 2104, 1756 |
Rint | 0.028 | 0.022 | 0.024 |
(sin θ/λ)max (Å−1) | 0.649 | 0.648 | 0.649 |
|
Refinement |
R[F2 > 2σ(F2)], wR(F2), S | 0.054, 0.131, 1.05 | 0.037, 0.096, 1.06 | 0.041, 0.113, 1.06 |
No. of reflections | 6382 | 2430 | 2104 |
No. of parameters | 379 | 169 | 146 |
No. of restraints | 4 | 4 | 3 |
H-atom treatment | H-atom parameters constrained | H-atom parameters constrained | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.28, −0.22 | 0.37, −0.24 | 0.26, −0.25 |
Hydrogen-bond geometry (Å, º) for (1) top
D—H···A | D—H | H···A | D···A | D—H···A |
O13—H13···N32i | 0.84 | 1.93 | 2.750 (2) | 167 |
O15—H15···O1 | 0.84 | 1.82 | 2.656 (2) | 175 |
O23—H23···O12ii | 0.84 | 1.85 | 2.684 (2) | 175 |
O25—H25···O2 | 0.84 | 1.81 | 2.649 (2) | 175 |
N31—H31···O11 | 0.93 | 1.84 | 2.750 (2) | 165 |
N41—H41···O22 | 0.93 | 1.65 | 2.575 (2) | 173 |
O1—H1A···O22i | 0.91 | 1.85 | 2.743 (2) | 167 |
O1—H1B···O11iii | 0.91 | 1.92 | 2.834 (2) | 173 |
O2—H2A···N42iv | 0.94 | 1.89 | 2.822 (2) | 173 |
O2—H2B···O11 | 0.90 | 1.96 | 2.827 (2) | 163 |
Symmetry codes: (i) x, −y+1/2, z−1/2; (ii) x, y+1, z; (iii) −x+1, y−1/2, −z+1/2; (iv) x, −y+3/2, z−1/2. |
Hydrogen-bond geometry (Å, º) for (2) top
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1A···O2i | 0.84 (2) | 1.85 (2) | 2.694 (2) | 176 (2) |
O1—H1B···O11 | 0.85 (2) | 1.99 (2) | 2.834 (2) | 175 (2) |
O2—H2A···O11ii | 0.84 (2) | 2.02 (2) | 2.856 (2) | 175 (2) |
O2—H2B···O12 | 0.85 (2) | 1.94 (2) | 2.759 (2) | 163 (2) |
O13—H13···O1iii | 0.84 | 1.78 | 2.618 (2) | 176 |
O15—H15···O12iv | 0.84 | 1.79 | 2.627 (2) | 172 |
N1—H1C···O13v | 0.92 | 2.05 | 2.858 (2) | 145 |
N1—H1D···O11 | 0.92 | 1.80 | 2.718 (2) | 178 |
Symmetry codes: (i) x, y, z+1; (ii) −x+1, −y, −z; (iii) −x, −y−1, −z; (iv) x, y−1, z; (v) −x, −y, −z. |
Hydrogen-bond geometry (Å, º) for (3) top
D—H···A | D—H | H···A | D···A | D—H···A |
O3—H3···O1i | 0.84 | 1.78 | 2.622 (2) | 175 |
O5—H5···O11ii | 0.84 | 1.79 | 2.625 (3) | 172 |
O11—H111···O3 | 0.83 | 2.13 | 2.950 (2) | 168 |
O11—H112···O2iii | 0.84 | 1.88 | 2.713 (2) | 171 |
N1—H1A···O5iv | 0.91 | 2.03 | 2.839 (2) | 147 |
N1—H1B···O2 | 0.91 | 1.83 | 2.729 (2) | 169 |
N1—H1C···O1v | 0.91 | 1.89 | 2.778 (2) | 166 |
Symmetry codes: (i) x−1, y, z; (ii) x, −y+3/2, z+1/2; (iii) −x, y+1/2, −z+3/2; (iv) −x+1, −y+1, −z+2; (v) x, −y+3/2, z−1/2. |
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