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Supporting information
![]() | Crystallographic Information File (CIF) https://doi.org/10.1107/S1600536803009851/ob6244sup1.cif |
![]() | Structure factor file (CIF format) https://doi.org/10.1107/S1600536803009851/ob6244Isup2.hkl |
CCDC reference: 214820
Key indicators
- Single-crystal X-ray study
- T = 293 K
- Mean
(C-C) = 0.003 Å
- R factor = 0.049
- wR factor = 0.154
- Data-to-parameter ratio = 19.3
checkCIF results
No syntax errors found ADDSYM reports no extra symmetryAlert Level C:
REFLT_03 From the CIF: _diffrn_reflns_theta_max 28.30 From the CIF: _reflns_number_total 6112 TEST2: Reflns within _diffrn_reflns_theta_max Count of symmetry unique reflns 6570 Completeness (_total/calc) 93.03% Alert C: < 95% complete
0 Alert Level A = Potentially serious problem
0 Alert Level B = Potential problem
1 Alert Level C = Please check
All experiments were performed under argon using freshly distilled dry solvents. To a solution of 1,1'-propylenedibenzimidazole (1.15 g, 4.17 mmol) in dimethylformamide (5 ml) 3-cyanopropyl chloride (0.8 ml, 8.34 mmol) was added and the mixture was refluxed for 3 h. Then all volatiles were driven off and the obtained crude product was crystallized from EtOH/Et2O (3:1) as a colorless crystals (1.69 g, 84%). M.p.: 392–393 K. 1H NMR (DMSO): δ 2.33 (m, NCH2CH2CH2CN, 4H), 2.78 (t, NCH2CH2CH2CN, 4H), 2.79 (m, NCH2CH2CH2N, 2H), 4.46 (t, NCH2CH2CH2CN, 4H), 4.82 (t, NCH2CH2CH2N, 4H), 7.69–8.23 (m, Ar—H, 8H), 10.54 (s, CH, 2H).13C NMR (DMSO): δ 15.68, 26.37, 29.82, 45.85, 47.48, 109.21, 115.64, 121.44, 128.36, 133.06, 144.89. Analysis calculated for C28H32Cl2N6: C 62.11, H 5.80, N 17.39%; found: C 62.13, H 5.80, N 17.47%.
The H atoms of the water molecules were located from difference maps, and those bound to the C atoms were geometrically positioned. They were allowed to ride on their parent atoms.
Data collection: SMART (Siemens, 1996); cell refinement: SAINT (Siemens, 1996); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997); software used to prepare material for publication: PLATON (Spek, 1990) and WinGX (Farrugia, 1999).
C25H28N62+·2Cl−·2H2O | Z = 2 |
Mr = 519.47 | F(000) = 548 |
Triclinic, P1 | Dx = 1.304 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 10.5530 (17) Å | Cell parameters from 8119 reflections |
b = 11.0533 (18) Å | θ = 2.4–28.3° |
c = 13.494 (2) Å | µ = 0.28 mm−1 |
α = 71.698 (3)° | T = 293 K |
β = 75.434 (3)° | Slab, colorless |
γ = 63.279 (2)° | 0.44 × 0.26 × 0.24 mm |
V = 1323.5 (4) Å3 |
Siemens SMART CCD area-detector diffractometer | 4561 reflections with I > 2σ(I) |
Detector resolution: 8.33 pixels mm-1 | Rint = 0.026 |
ω scans | θmax = 28.3°, θmin = 2.4° |
Absorption correction: empirical (using intensity measurements) (SADABS; Sheldrick, 1996) | h = −13→14 |
Tmin = 0.887, Tmax = 0.936 | k = −14→14 |
8119 measured reflections | l = −17→7 |
6112 independent reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.049 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.154 | H-atom parameters not refined |
S = 1.00 | w = 1/[σ2(Fo2) + (0.0902P)2 + 0.219P] where P = (Fo2 + 2Fc2)/3 |
6112 reflections | (Δ/σ)max = 0.001 |
316 parameters | Δρmax = 0.49 e Å−3 |
0 restraints | Δρmin = −0.30 e Å−3 |
C25H28N62+·2Cl−·2H2O | γ = 63.279 (2)° |
Mr = 519.47 | V = 1323.5 (4) Å3 |
Triclinic, P1 | Z = 2 |
a = 10.5530 (17) Å | Mo Kα radiation |
b = 11.0533 (18) Å | µ = 0.28 mm−1 |
c = 13.494 (2) Å | T = 293 K |
α = 71.698 (3)° | 0.44 × 0.26 × 0.24 mm |
β = 75.434 (3)° |
Siemens SMART CCD area-detector diffractometer | 6112 independent reflections |
Absorption correction: empirical (using intensity measurements) (SADABS; Sheldrick, 1996) | 4561 reflections with I > 2σ(I) |
Tmin = 0.887, Tmax = 0.936 | Rint = 0.026 |
8119 measured reflections |
R[F2 > 2σ(F2)] = 0.049 | 0 restraints |
wR(F2) = 0.154 | H-atom parameters not refined |
S = 1.00 | Δρmax = 0.49 e Å−3 |
6112 reflections | Δρmin = −0.30 e Å−3 |
316 parameters |
Experimental. 1H-NMR and 13C-NMR spectra were recorded using a Bruker DPX-400 high performance digital FT-NMR (Bruker WM360, Bruker Instruments, Inc., Billercia, USA) spectrometers. Elemental analysis was performed by the elemental analysis laboratory of Tübitak (The Scientific and Technical Research Consul of Turkey) at Ankara (Turkey). Melting point was recorded using an electrothermal melting point apparatus, Electrothermal 9200 (Electrothermal Engineering Ltd., Essex, UK) and are uncorrected. |
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All e.s.d.'s are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles |
Refinement. Refinement on F2 for ALL reflections except those flagged by the user for potential systematic errors. Weighted R-factors wR and all goodnesses of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The observed criterion of F2 > σ(F2) is used only for calculating -R-factor-obs etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
N1 | −0.10057 (15) | 0.90031 (16) | 0.38903 (12) | 0.0428 (4) | |
N2 | 0.12677 (15) | 0.78637 (14) | 0.40517 (11) | 0.0381 (4) | |
N3 | 0.44189 (16) | 0.66596 (16) | 0.14148 (11) | 0.0454 (5) | |
N4 | 0.64901 (16) | 0.63512 (16) | 0.04270 (12) | 0.0458 (5) | |
N5 | −0.5325 (3) | 0.9738 (3) | 0.13791 (19) | 0.0855 (9) | |
N6 | 0.9234 (3) | 1.0061 (3) | −0.1195 (2) | 0.0994 (11) | |
C1 | 0.00551 (18) | 0.77514 (19) | 0.40884 (14) | 0.0423 (5) | |
C2 | −0.04630 (18) | 1.00040 (18) | 0.37090 (13) | 0.0404 (5) | |
C3 | −0.1118 (2) | 1.1449 (2) | 0.34932 (15) | 0.0508 (6) | |
C4 | −0.0243 (3) | 1.2126 (2) | 0.33849 (16) | 0.0587 (7) | |
C5 | 0.1207 (3) | 1.1391 (2) | 0.35091 (17) | 0.0579 (7) | |
C6 | 0.1852 (2) | 0.9955 (2) | 0.37441 (15) | 0.0474 (6) | |
C7 | 0.09840 (17) | 0.92759 (17) | 0.38247 (12) | 0.0376 (5) | |
C8 | 0.26509 (18) | 0.66833 (19) | 0.42543 (14) | 0.0436 (5) | |
C9 | 0.37953 (19) | 0.6643 (2) | 0.33081 (14) | 0.0451 (5) | |
C10 | 0.3302 (2) | 0.6716 (3) | 0.23348 (15) | 0.0544 (7) | |
C11 | 0.57801 (19) | 0.64014 (19) | 0.13959 (14) | 0.0461 (6) | |
C12 | 0.55243 (19) | 0.65813 (18) | −0.02259 (14) | 0.0438 (5) | |
C13 | 0.5707 (2) | 0.6571 (2) | −0.12813 (15) | 0.0521 (6) | |
C14 | 0.4503 (3) | 0.6809 (2) | −0.16688 (16) | 0.0584 (7) | |
C15 | 0.3173 (3) | 0.7048 (2) | −0.10379 (16) | 0.0569 (7) | |
C16 | 0.2997 (2) | 0.7041 (2) | 0.00100 (16) | 0.0524 (6) | |
C17 | 0.4208 (2) | 0.67908 (18) | 0.04035 (14) | 0.0442 (5) | |
C18 | −0.2516 (2) | 0.9283 (2) | 0.39298 (16) | 0.0524 (6) | |
C19 | −0.28770 (19) | 0.9430 (2) | 0.28764 (15) | 0.0473 (6) | |
C20 | −0.4482 (2) | 0.9799 (2) | 0.30018 (16) | 0.0518 (6) | |
C21 | −0.4950 (2) | 0.9783 (2) | 0.20819 (18) | 0.0577 (7) | |
C22 | 0.8033 (2) | 0.5998 (2) | 0.01247 (17) | 0.0551 (6) | |
C23 | 0.8401 (2) | 0.7197 (2) | −0.05698 (17) | 0.0581 (7) | |
C24 | 0.8160 (3) | 0.8273 (3) | 0.00065 (19) | 0.0677 (8) | |
C25 | 0.8761 (3) | 0.9285 (3) | −0.0660 (2) | 0.0743 (9) | |
O1W | 0.1555 (2) | 0.4021 (2) | 0.43591 (17) | 0.0937 (8) | |
O2W | 0.27927 (19) | 0.4026 (2) | 0.67187 (14) | 0.0796 (7) | |
Cl1 | 0.48420 (5) | 0.27915 (5) | 0.45865 (4) | 0.0565 (2) | |
Cl2 | 0.03459 (5) | 0.56589 (6) | 0.21851 (4) | 0.0632 (2) | |
H1A | −0.00386 | 0.69135 | 0.42327 | 0.0508* | |
H3A | −0.20871 | 1.19339 | 0.34255 | 0.0609* | |
H4A | −0.06304 | 1.30938 | 0.32254 | 0.0705* | |
H5A | 0.17553 | 1.18870 | 0.34306 | 0.0694* | |
H6A | 0.28116 | 0.94699 | 0.38427 | 0.0569* | |
H8A | 0.25178 | 0.58210 | 0.44535 | 0.0524* | |
H8B | 0.29746 | 0.67455 | 0.48416 | 0.0524* | |
H9A | 0.40565 | 0.74190 | 0.31867 | 0.0541* | |
H9B | 0.46412 | 0.57892 | 0.34565 | 0.0541* | |
H10A | 0.30297 | 0.59458 | 0.24597 | 0.0653* | |
H10B | 0.24627 | 0.75743 | 0.21823 | 0.0653* | |
H11A | 0.61855 | 0.62729 | 0.19782 | 0.0553* | |
H13A | 0.65870 | 0.64124 | −0.17002 | 0.0625* | |
H14A | 0.45750 | 0.68109 | −0.23705 | 0.0701* | |
H15A | 0.23886 | 0.72154 | −0.13363 | 0.0683* | |
H16A | 0.21172 | 0.71951 | 0.04291 | 0.0628* | |
H18A | −0.31169 | 1.01338 | 0.41686 | 0.0628* | |
H18B | −0.27216 | 0.85289 | 0.44370 | 0.0628* | |
H19A | −0.23352 | 0.85635 | 0.26498 | 0.0568* | |
H19B | −0.26433 | 1.01579 | 0.23531 | 0.0568* | |
H20A | −0.47182 | 0.91431 | 0.36050 | 0.0622* | |
H20B | −0.50042 | 1.07193 | 0.31449 | 0.0622* | |
H22A | 0.84356 | 0.52512 | −0.02411 | 0.0662* | |
H22B | 0.84836 | 0.56515 | 0.07593 | 0.0662* | |
H23A | 0.93980 | 0.68325 | −0.08719 | 0.0698* | |
H23B | 0.78259 | 0.76478 | −0.11446 | 0.0698* | |
H24A | 0.71417 | 0.87611 | 0.02031 | 0.0812* | |
H24B | 0.86082 | 0.78109 | 0.06461 | 0.0812* | |
H201 | 0.26466 | 0.36535 | 0.42204 | 0.1406* | |
H202 | 0.12206 | 0.44395 | 0.35934 | 0.1406* | |
H101 | 0.18699 | 0.41937 | 0.68584 | 0.1194* | |
H102 | 0.31819 | 0.38347 | 0.60184 | 0.1194* |
U11 | U22 | U33 | U12 | U13 | U23 | |
N1 | 0.0386 (7) | 0.0476 (8) | 0.0452 (8) | −0.0178 (6) | −0.0032 (6) | −0.0157 (7) |
N2 | 0.0392 (7) | 0.0371 (7) | 0.0367 (7) | −0.0149 (6) | −0.0007 (5) | −0.0110 (5) |
N3 | 0.0462 (8) | 0.0489 (9) | 0.0370 (8) | −0.0140 (7) | −0.0026 (6) | −0.0148 (6) |
N4 | 0.0462 (8) | 0.0450 (8) | 0.0389 (8) | −0.0119 (7) | −0.0038 (6) | −0.0113 (6) |
N5 | 0.0702 (13) | 0.1110 (19) | 0.0733 (14) | −0.0255 (13) | −0.0224 (11) | −0.0252 (13) |
N6 | 0.132 (2) | 0.0833 (17) | 0.0934 (19) | −0.0559 (17) | −0.0077 (16) | −0.0208 (14) |
C1 | 0.0439 (9) | 0.0441 (9) | 0.0434 (9) | −0.0207 (7) | −0.0007 (7) | −0.0153 (7) |
C2 | 0.0442 (9) | 0.0423 (9) | 0.0337 (8) | −0.0166 (7) | −0.0011 (7) | −0.0121 (7) |
C3 | 0.0564 (11) | 0.0435 (10) | 0.0399 (9) | −0.0107 (8) | −0.0032 (8) | −0.0101 (8) |
C4 | 0.0839 (15) | 0.0389 (10) | 0.0458 (11) | −0.0237 (10) | 0.0022 (10) | −0.0099 (8) |
C5 | 0.0772 (14) | 0.0570 (12) | 0.0513 (11) | −0.0420 (11) | 0.0083 (10) | −0.0185 (9) |
C6 | 0.0503 (10) | 0.0546 (11) | 0.0453 (10) | −0.0285 (8) | 0.0026 (8) | −0.0177 (8) |
C7 | 0.0431 (8) | 0.0398 (8) | 0.0302 (8) | −0.0176 (7) | 0.0004 (6) | −0.0111 (6) |
C8 | 0.0425 (9) | 0.0419 (9) | 0.0380 (9) | −0.0113 (7) | −0.0043 (7) | −0.0076 (7) |
C9 | 0.0414 (9) | 0.0453 (9) | 0.0418 (9) | −0.0122 (7) | −0.0026 (7) | −0.0116 (7) |
C10 | 0.0469 (10) | 0.0741 (14) | 0.0442 (10) | −0.0242 (10) | 0.0027 (8) | −0.0234 (9) |
C11 | 0.0474 (10) | 0.0471 (10) | 0.0409 (9) | −0.0141 (8) | −0.0056 (7) | −0.0140 (8) |
C12 | 0.0499 (10) | 0.0347 (8) | 0.0387 (9) | −0.0105 (7) | −0.0063 (7) | −0.0076 (7) |
C13 | 0.0627 (11) | 0.0444 (10) | 0.0381 (9) | −0.0147 (8) | −0.0025 (8) | −0.0088 (8) |
C14 | 0.0824 (15) | 0.0489 (11) | 0.0382 (10) | −0.0208 (10) | −0.0135 (10) | −0.0069 (8) |
C15 | 0.0695 (13) | 0.0509 (11) | 0.0483 (11) | −0.0207 (10) | −0.0217 (10) | −0.0033 (9) |
C16 | 0.0533 (10) | 0.0504 (11) | 0.0482 (10) | −0.0163 (9) | −0.0097 (8) | −0.0093 (8) |
C17 | 0.0515 (10) | 0.0382 (9) | 0.0369 (9) | −0.0126 (7) | −0.0058 (7) | −0.0093 (7) |
C18 | 0.0404 (9) | 0.0645 (12) | 0.0544 (11) | −0.0222 (9) | −0.0022 (8) | −0.0182 (9) |
C19 | 0.0436 (9) | 0.0446 (10) | 0.0521 (10) | −0.0178 (8) | −0.0080 (8) | −0.0076 (8) |
C20 | 0.0440 (9) | 0.0537 (11) | 0.0533 (11) | −0.0188 (8) | −0.0104 (8) | −0.0047 (9) |
C21 | 0.0445 (10) | 0.0598 (12) | 0.0605 (13) | −0.0168 (9) | −0.0122 (9) | −0.0055 (10) |
C22 | 0.0465 (10) | 0.0530 (11) | 0.0535 (11) | −0.0109 (8) | −0.0035 (8) | −0.0125 (9) |
C23 | 0.0511 (11) | 0.0640 (13) | 0.0496 (11) | −0.0178 (9) | −0.0018 (9) | −0.0125 (9) |
C24 | 0.0686 (14) | 0.0659 (14) | 0.0546 (12) | −0.0161 (11) | −0.0073 (10) | −0.0131 (10) |
C25 | 0.0903 (18) | 0.0600 (14) | 0.0698 (16) | −0.0240 (13) | −0.0191 (13) | −0.0141 (12) |
O1W | 0.0837 (13) | 0.1035 (15) | 0.0932 (14) | −0.0528 (12) | −0.0186 (10) | 0.0064 (11) |
O2W | 0.0645 (10) | 0.1148 (15) | 0.0659 (10) | −0.0362 (10) | −0.0095 (8) | −0.0285 (10) |
Cl1 | 0.0528 (3) | 0.0554 (3) | 0.0500 (3) | −0.0148 (2) | −0.0069 (2) | −0.0081 (2) |
Cl2 | 0.0503 (3) | 0.0738 (4) | 0.0573 (3) | −0.0211 (3) | −0.0040 (2) | −0.0131 (3) |
O1W—H202 | 1.0689 | C19—C20 | 1.530 (3) |
O1W—H201 | 1.0225 | C20—C21 | 1.454 (3) |
O2W—H102 | 0.9791 | C22—C23 | 1.512 (3) |
O2W—H101 | 0.8863 | C23—C24 | 1.514 (4) |
N1—C2 | 1.393 (3) | C24—C25 | 1.477 (4) |
N1—C18 | 1.471 (3) | C1—H1A | 0.9300 |
N1—C1 | 1.328 (3) | C3—H3A | 0.9300 |
N2—C8 | 1.474 (3) | C4—H4A | 0.9296 |
N2—C7 | 1.395 (2) | C5—H5A | 0.9298 |
N2—C1 | 1.328 (3) | C6—H6A | 0.9302 |
N3—C11 | 1.328 (3) | C8—H8A | 0.9700 |
N3—C17 | 1.390 (2) | C8—H8B | 0.9700 |
N3—C10 | 1.477 (3) | C9—H9A | 0.9696 |
N4—C11 | 1.338 (2) | C9—H9B | 0.9702 |
N4—C12 | 1.399 (3) | C10—H10B | 0.9697 |
N4—C22 | 1.471 (3) | C10—H10A | 0.9702 |
N5—C21 | 1.138 (4) | C11—H11A | 0.9300 |
N6—C25 | 1.149 (4) | C13—H13A | 0.9298 |
C2—C3 | 1.389 (3) | C14—H14A | 0.9301 |
C2—C7 | 1.393 (3) | C15—H15A | 0.9299 |
C3—C4 | 1.385 (4) | C16—H16A | 0.9301 |
C4—C5 | 1.398 (4) | C18—H18B | 0.9695 |
C5—C6 | 1.380 (3) | C18—H18A | 0.9704 |
C6—C7 | 1.390 (3) | C19—H19B | 0.9700 |
C8—C9 | 1.517 (3) | C19—H19A | 0.9702 |
C9—C10 | 1.497 (3) | C20—H20A | 0.9696 |
C12—C13 | 1.391 (3) | C20—H20B | 0.9703 |
C12—C17 | 1.395 (3) | C22—H22A | 0.9698 |
C13—C14 | 1.380 (4) | C22—H22B | 0.9701 |
C14—C15 | 1.404 (4) | C23—H23B | 0.9697 |
C15—C16 | 1.377 (3) | C23—H23A | 0.9704 |
C16—C17 | 1.387 (3) | C24—H24A | 0.9702 |
C18—C19 | 1.505 (3) | C24—H24B | 0.9699 |
Cl1···O2W | 3.391 (2) | C10···H16A | 2.9365 |
Cl1···O1W | 3.163 (2) | C11···H9B | 2.7391 |
Cl2···O1W | 3.159 (2) | C11···H9A | 2.8407 |
Cl2···O2Wi | 3.178 (2) | C12···H23B | 2.9947 |
Cl1···H8A | 3.1175 | C13···H23B | 3.0314 |
Cl1···H102 | 2.4520 | C13···H22A | 3.0593 |
Cl1···H9B | 3.1156 | C14···H20Bviii | 3.0105 |
Cl1···H18Aii | 2.8856 | C14···H19Bviii | 2.9990 |
Cl1···H3Aii | 3.0776 | C15···H19Bviii | 2.9162 |
Cl1···H18Bi | 3.0199 | C16···H10B | 3.0353 |
Cl1···H201 | 2.1942 | C18···H3A | 3.0065 |
Cl1···H20Ai | 2.7127 | C20···H6Av | 2.9363 |
Cl1···H14Aiii | 2.8295 | C21···H6Av | 2.9565 |
Cl1···H8Biv | 2.8930 | C21···H9Av | 3.0628 |
Cl2···H22Bv | 3.0806 | C21···H24Av | 3.0524 |
Cl2···H24Bv | 2.8678 | C22···H13A | 3.0258 |
Cl2···H10A | 3.1094 | H1A···O1W | 2.8365 |
Cl2···H101i | 2.3306 | H1A···O1Wi | 2.4419 |
Cl2···H202 | 2.1059 | H1A···H18B | 2.5789 |
Cl2···H13Aiii | 3.0590 | H1A···H8A | 2.4645 |
Cl2···H22Aiii | 2.8886 | H3A···H18A | 2.5077 |
O1W···Cl1 | 3.163 (2) | H3A···Cl1xi | 3.0776 |
O1W···C1i | 3.121 (3) | H3A···C18 | 3.0065 |
O1W···Cl2 | 3.159 (2) | H5A···O1Wxii | 2.9074 |
O2W···Cl2i | 3.178 (2) | H6A···C9 | 3.0795 |
O2W···Cl1 | 3.391 (2) | H6A···C20x | 2.9363 |
O2W···C11iv | 3.082 (3) | H6A···C21x | 2.9565 |
O2W···C9iv | 3.327 (3) | H6A···C8 | 3.0286 |
O1W···H5Avi | 2.9074 | H6A···H9A | 2.3760 |
O1W···H1A | 2.8365 | H6A···H20Ax | 2.4154 |
O1W···H18Bi | 2.6662 | H8A···Cl1 | 3.1175 |
O1W···H8A | 2.6550 | H8A···H201 | 2.4528 |
O1W···H1Ai | 2.4419 | H8A···O1W | 2.6550 |
O2W···H11Aiv | 2.1523 | H8A···H1A | 2.4645 |
O2W···H9Biv | 2.7525 | H8A···H102 | 2.4939 |
N1···C5vii | 3.361 (3) | H8A···H10A | 2.5792 |
N2···C4vii | 3.357 (3) | H8B···Cl1iv | 2.8930 |
N3···C14iii | 3.400 (3) | H9A···H6A | 2.3760 |
N5···C11v | 3.325 (4) | H9A···C11 | 2.8407 |
N5···C24viii | 3.405 (5) | H9A···C21x | 3.0628 |
N6···C7ix | 3.436 (3) | H9A···C6 | 2.9009 |
N6···C2ix | 3.324 (3) | H9A···C7 | 3.0312 |
N2···H10B | 2.5690 | H9A···H11A | 2.4914 |
N4···H24A | 2.9490 | H9B···Cl1 | 3.1156 |
N5···H24Aviii | 2.8214 | H9B···O2Wiv | 2.7525 |
N5···H24Av | 2.6327 | H9B···C11 | 2.7391 |
N5···H23Bviii | 2.8987 | H9B···H11A | 2.3237 |
N6···H10Bix | 2.5723 | H10A···H8A | 2.5792 |
C1···C5vii | 3.436 (3) | H10A···Cl2 | 3.1094 |
C1···O1Wi | 3.121 (3) | H10B···N2 | 2.5690 |
C1···C4vii | 3.512 (3) | H10B···C7 | 3.0205 |
C1···C10 | 3.570 (3) | H10B···N6ix | 2.5723 |
C2···N6ix | 3.324 (3) | H10B···C16 | 3.0353 |
C2···C7vii | 3.516 (2) | H11A···H22B | 2.5027 |
C2···C6vii | 3.386 (3) | H11A···H9B | 2.3237 |
C3···C6vii | 3.592 (3) | H11A···H9A | 2.4914 |
C3···C7vii | 3.478 (3) | H11A···C9 | 2.6470 |
C4···C1vii | 3.512 (3) | H11A···O2Wiv | 2.1523 |
C4···N2vii | 3.357 (3) | H13A···C22 | 3.0258 |
C5···C1vii | 3.436 (3) | H13A···Cl2iii | 3.0590 |
C5···N1vii | 3.361 (3) | H14A···Cl1iii | 2.8295 |
C6···C2vii | 3.386 (3) | H16A···C10 | 2.9365 |
C6···C21x | 3.513 (3) | H18A···H3A | 2.5077 |
C6···C9 | 3.457 (3) | H18A···Cl1xi | 2.8856 |
C6···C3vii | 3.592 (3) | H18A···C3 | 2.8900 |
C7···N6ix | 3.436 (3) | H18A···H20B | 2.4407 |
C7···C10 | 3.593 (3) | H18B···O1Wi | 2.6662 |
C7···C3vii | 3.478 (3) | H18B···Cl1i | 3.0199 |
C7···C2vii | 3.516 (2) | H18B···H201i | 2.5026 |
C9···C6 | 3.457 (3) | H18B···H1A | 2.5789 |
C9···O2Wiv | 3.327 (3) | H18B···H20A | 2.3634 |
C10···C7 | 3.593 (3) | H19B···C14viii | 2.9990 |
C10···C1 | 3.570 (3) | H19B···C15viii | 2.9162 |
C11···O2Wiv | 3.082 (3) | H20A···H18B | 2.3634 |
C11···C14iii | 3.591 (3) | H20A···H6Av | 2.4154 |
C11···N5x | 3.325 (4) | H20A···Cl1i | 2.7127 |
C12···C16iii | 3.525 (3) | H20B···H18A | 2.4407 |
C12···C15iii | 3.580 (3) | H20B···C14viii | 3.0105 |
C13···C17iii | 3.494 (3) | H22A···Cl2iii | 2.8886 |
C13···C21viii | 3.585 (3) | H22A···C13 | 3.0593 |
C13···C16iii | 3.567 (3) | H22B···H24B | 2.4043 |
C14···C17iii | 3.554 (3) | H22B···H11A | 2.5027 |
C14···C11iii | 3.591 (3) | H22B···Cl2x | 3.0806 |
C14···N3iii | 3.400 (3) | H23B···C5ix | 3.0917 |
C15···C12iii | 3.580 (3) | H23B···C12 | 2.9947 |
C16···C12iii | 3.525 (3) | H23B···C13 | 3.0314 |
C16···C13iii | 3.567 (3) | H23B···N5viii | 2.8987 |
C17···C14iii | 3.554 (3) | H24A···N5x | 2.6327 |
C17···C13iii | 3.494 (3) | H24A···C21x | 3.0524 |
C21···C6v | 3.513 (3) | H24A···N5viii | 2.8214 |
C21···C13viii | 3.585 (3) | H24A···N4 | 2.9490 |
C24···N5viii | 3.405 (5) | H24B···Cl2x | 2.8678 |
C3···H18A | 2.8900 | H24B···H22B | 2.4043 |
C5···H23Bix | 3.0917 | H101···Cl2i | 2.3306 |
C6···H9A | 2.9009 | H102···Cl1 | 2.4520 |
C7···H10B | 3.0205 | H102···H8A | 2.4939 |
C7···H9A | 3.0312 | H201···H18Bi | 2.5026 |
C8···H6A | 3.0286 | H201···Cl1 | 2.1942 |
C9···H6A | 3.0795 | H201···H8A | 2.4528 |
C9···H11A | 2.6470 | H202···Cl2 | 2.1059 |
H201—O1W—H202 | 104.58 | C7—C6—H6A | 121.96 |
H101—O2W—H102 | 110.73 | N2—C8—H8B | 109.02 |
C1—N1—C2 | 108.45 (17) | N2—C8—H8A | 109.02 |
C2—N1—C18 | 125.72 (16) | H8A—C8—H8B | 107.79 |
C1—N1—C18 | 125.71 (17) | C9—C8—H8A | 109.03 |
C1—N2—C8 | 125.06 (16) | C9—C8—H8B | 109.01 |
C7—N2—C8 | 126.78 (17) | C8—C9—H9A | 109.21 |
C1—N2—C7 | 108.13 (16) | C10—C9—H9B | 109.18 |
C11—N3—C17 | 108.14 (16) | C8—C9—H9B | 109.19 |
C10—N3—C11 | 127.98 (16) | C10—C9—H9A | 109.20 |
C10—N3—C17 | 123.77 (19) | H9A—C9—H9B | 107.91 |
C12—N4—C22 | 126.18 (16) | C9—C10—H10A | 109.15 |
C11—N4—C12 | 107.58 (18) | C9—C10—H10B | 109.17 |
C11—N4—C22 | 126.05 (18) | N3—C10—H10B | 109.17 |
N1—C1—N2 | 110.52 (17) | N3—C10—H10A | 109.14 |
C3—C2—C7 | 122.05 (19) | H10A—C10—H10B | 107.88 |
N1—C2—C3 | 131.7 (2) | N4—C11—H11A | 124.54 |
N1—C2—C7 | 106.25 (16) | N3—C11—H11A | 124.54 |
C2—C3—C4 | 116.1 (2) | C14—C13—H13A | 122.00 |
C3—C4—C5 | 121.7 (2) | C12—C13—H13A | 122.05 |
C4—C5—C6 | 122.3 (3) | C15—C14—H14A | 118.94 |
C5—C6—C7 | 116.1 (2) | C13—C14—H14A | 118.93 |
N2—C7—C6 | 131.51 (18) | C14—C15—H15A | 119.04 |
N2—C7—C2 | 106.65 (17) | C16—C15—H15A | 119.06 |
C2—C7—C6 | 121.81 (17) | C15—C16—H16A | 121.93 |
N2—C8—C9 | 112.83 (15) | C17—C16—H16A | 121.97 |
C8—C9—C10 | 112.06 (19) | C19—C18—H18A | 109.14 |
N3—C10—C9 | 112.2 (2) | C19—C18—H18B | 109.20 |
N3—C11—N4 | 110.91 (17) | H18A—C18—H18B | 107.88 |
N4—C12—C17 | 106.53 (16) | N1—C18—H18B | 109.11 |
N4—C12—C13 | 131.7 (2) | N1—C18—H18A | 109.06 |
C13—C12—C17 | 121.7 (2) | C20—C19—H19A | 110.17 |
C12—C13—C14 | 115.9 (2) | C18—C19—H19A | 110.19 |
C13—C14—C15 | 122.1 (2) | C18—C19—H19B | 110.25 |
C14—C15—C16 | 121.9 (3) | H19A—C19—H19B | 108.49 |
C15—C16—C17 | 116.1 (2) | C20—C19—H19B | 110.22 |
N3—C17—C16 | 130.97 (19) | C19—C20—H20B | 108.79 |
C12—C17—C16 | 122.18 (18) | C19—C20—H20A | 108.84 |
N3—C17—C12 | 106.83 (19) | H20A—C20—H20B | 107.71 |
N1—C18—C19 | 112.35 (17) | C21—C20—H20A | 108.90 |
C18—C19—C20 | 107.52 (17) | C21—C20—H20B | 108.88 |
C19—C20—C21 | 113.57 (18) | C23—C22—H22A | 108.62 |
N5—C21—C20 | 178.0 (3) | C23—C22—H22B | 108.62 |
N4—C22—C23 | 114.46 (17) | H22A—C22—H22B | 107.59 |
C22—C23—C24 | 113.54 (19) | N4—C22—H22A | 108.68 |
C23—C24—C25 | 110.9 (2) | N4—C22—H22B | 108.66 |
N6—C25—C24 | 178.7 (3) | C24—C23—H23A | 108.81 |
N2—C1—H1A | 124.75 | C22—C23—H23A | 108.87 |
N1—C1—H1A | 124.74 | C22—C23—H23B | 108.90 |
C4—C3—H3A | 121.92 | H23A—C23—H23B | 107.70 |
C2—C3—H3A | 121.99 | C24—C23—H23B | 108.87 |
C3—C4—H4A | 119.11 | C23—C24—H24B | 109.47 |
C5—C4—H4A | 119.20 | C23—C24—H24A | 109.42 |
C6—C5—H5A | 118.88 | H24A—C24—H24B | 108.04 |
C4—C5—H5A | 118.86 | C25—C24—H24A | 109.45 |
C5—C6—H6A | 121.96 | C25—C24—H24B | 109.46 |
C2—N1—C1—N2 | 0.2 (2) | C11—N4—C22—C23 | −111.9 (2) |
C18—N1—C1—N2 | −175.88 (16) | C12—N4—C22—C23 | 73.8 (2) |
C1—N1—C2—C3 | −178.39 (19) | N1—C2—C3—C4 | 178.15 (18) |
C1—N1—C2—C7 | −0.79 (19) | C7—C2—C3—C4 | 0.9 (3) |
C18—N1—C2—C3 | −2.3 (3) | N1—C2—C7—N2 | 1.10 (18) |
C18—N1—C2—C7 | 175.24 (16) | N1—C2—C7—C6 | −177.03 (16) |
C1—N1—C18—C19 | −92.4 (2) | C3—C2—C7—C6 | 0.9 (3) |
C2—N1—C18—C19 | 92.2 (2) | C3—C2—C7—N2 | 178.98 (16) |
C7—N2—C1—N1 | 0.6 (2) | C2—C3—C4—C5 | −1.3 (3) |
C8—N2—C1—N1 | 178.67 (15) | C3—C4—C5—C6 | 0.1 (3) |
C1—N2—C7—C2 | −1.03 (18) | C4—C5—C6—C7 | 1.6 (3) |
C1—N2—C7—C6 | 176.84 (18) | C5—C6—C7—C2 | −2.0 (3) |
C8—N2—C7—C2 | −179.11 (15) | C5—C6—C7—N2 | −179.64 (18) |
C8—N2—C7—C6 | −1.2 (3) | N2—C8—C9—C10 | −52.0 (2) |
C1—N2—C8—C9 | 118.3 (2) | C8—C9—C10—N3 | −179.30 (18) |
C7—N2—C8—C9 | −63.9 (2) | N4—C12—C13—C14 | 178.2 (2) |
C11—N3—C10—C9 | 8.3 (3) | C17—C12—C13—C14 | 1.3 (3) |
C17—N3—C10—C9 | −176.08 (18) | N4—C12—C17—N3 | −1.0 (2) |
C10—N3—C11—N4 | 176.1 (2) | N4—C12—C17—C16 | −179.53 (18) |
C17—N3—C11—N4 | −0.1 (2) | C13—C12—C17—N3 | 176.65 (17) |
C10—N3—C17—C12 | −175.7 (2) | C13—C12—C17—C16 | −1.9 (3) |
C10—N3—C17—C16 | 2.7 (3) | C12—C13—C14—C15 | 0.0 (3) |
C11—N3—C17—C12 | 0.7 (2) | C13—C14—C15—C16 | −0.8 (3) |
C11—N3—C17—C16 | 179.1 (2) | C14—C15—C16—C17 | 0.3 (3) |
C12—N4—C11—N3 | −0.5 (2) | C15—C16—C17—C12 | 1.1 (3) |
C22—N4—C11—N3 | −175.72 (17) | C15—C16—C17—N3 | −177.14 (19) |
C11—N4—C12—C13 | −176.4 (2) | N1—C18—C19—C20 | −176.83 (16) |
C11—N4—C12—C17 | 0.9 (2) | C18—C19—C20—C21 | −171.87 (17) |
C22—N4—C12—C13 | −1.2 (3) | N4—C22—C23—C24 | 72.7 (3) |
C22—N4—C12—C17 | 176.10 (17) | C22—C23—C24—C25 | 170.5 (2) |
Symmetry codes: (i) −x, −y+1, −z+1; (ii) x+1, y−1, z; (iii) −x+1, −y+1, −z; (iv) −x+1, −y+1, −z+1; (v) x−1, y, z; (vi) x, y−1, z; (vii) −x, −y+2, −z+1; (viii) −x, −y+2, −z; (ix) −x+1, −y+2, −z; (x) x+1, y, z; (xi) x−1, y+1, z; (xii) x, y+1, z. |
D—H···A | D—H | H···A | D···A | D—H···A |
O2W—H101···Cl2i | 0.89 | 2.33 | 3.178 (2) | 160 |
O2W—H102···Cl1 | 0.98 | 2.45 | 3.391 (2) | 161 |
O1W—H201···Cl1 | 1.02 | 2.19 | 3.163 (2) | 158 |
O1W—H202···Cl2 | 1.07 | 2.11 | 3.159 (2) | 168 |
C1—H1A···O1Wi | 0.93 | 2.44 | 3.121 (3) | 130 |
C10—H10B···N2 | 0.97 | 2.57 | 2.912 (3) | 101 |
C10—H10B···N6ix | 0.97 | 2.57 | 3.503 (4) | 161 |
C11—H11A···O2Wiv | 0.93 | 2.15 | 3.082 (3) | 178 |
C14—H14A···Cl1iii | 0.93 | 2.83 | 3.740 (2) | 166 |
C20—H20A···Cl1i | 0.97 | 2.71 | 3.666 (2) | 168 |
Symmetry codes: (i) −x, −y+1, −z+1; (iii) −x+1, −y+1, −z; (iv) −x+1, −y+1, −z+1; (ix) −x+1, −y+2, −z. |
Experimental details
Crystal data | |
Chemical formula | C25H28N62+·2Cl−·2H2O |
Mr | 519.47 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 293 |
a, b, c (Å) | 10.5530 (17), 11.0533 (18), 13.494 (2) |
α, β, γ (°) | 71.698 (3), 75.434 (3), 63.279 (2) |
V (Å3) | 1323.5 (4) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 0.28 |
Crystal size (mm) | 0.44 × 0.26 × 0.24 |
Data collection | |
Diffractometer | Siemens SMART CCD area-detector diffractometer |
Absorption correction | Empirical (using intensity measurements) (SADABS; Sheldrick, 1996) |
Tmin, Tmax | 0.887, 0.936 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 8119, 6112, 4561 |
Rint | 0.026 |
(sin θ/λ)max (Å−1) | 0.667 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.049, 0.154, 1.00 |
No. of reflections | 6112 |
No. of parameters | 316 |
H-atom treatment | H-atom parameters not refined |
Δρmax, Δρmin (e Å−3) | 0.49, −0.30 |
Computer programs: SMART (Siemens, 1996), SAINT (Siemens, 1996), SAINT, SHELXS97 (Sheldrick, 1997), SHELXL97 (Sheldrick, 1997), ORTEP-3 for Windows (Farrugia, 1997), PLATON (Spek, 1990) and WinGX (Farrugia, 1999).
N1—C2 | 1.393 (3) | N4—C22 | 1.471 (3) |
N1—C18 | 1.471 (3) | N5—C21 | 1.138 (4) |
N1—C1 | 1.328 (3) | N6—C25 | 1.149 (4) |
N2—C8 | 1.474 (3) | C8—C9 | 1.517 (3) |
N2—C7 | 1.395 (2) | C9—C10 | 1.497 (3) |
N2—C1 | 1.328 (3) | C18—C19 | 1.505 (3) |
N3—C11 | 1.328 (3) | C19—C20 | 1.530 (3) |
N3—C17 | 1.390 (2) | C20—C21 | 1.454 (3) |
N3—C10 | 1.477 (3) | C22—C23 | 1.512 (3) |
N4—C11 | 1.338 (2) | C23—C24 | 1.514 (4) |
N4—C12 | 1.399 (3) | C24—C25 | 1.477 (4) |
C7—N2—C8—C9 | −63.9 (2) | C8—C9—C10—N3 | −179.30 (18) |
C17—N3—C10—C9 | −176.08 (18) | C18—C19—C20—C21 | −171.87 (17) |
N2—C8—C9—C10 | −52.0 (2) | C22—C23—C24—C25 | 170.5 (2) |
D—H···A | D—H | H···A | D···A | D—H···A |
O2W—H101···Cl2i | 0.89 | 2.33 | 3.178 (2) | 160 |
O2W—H102···Cl1 | 0.98 | 2.45 | 3.391 (2) | 161 |
O1W—H201···Cl1 | 1.02 | 2.19 | 3.163 (2) | 158 |
O1W—H202···Cl2 | 1.07 | 2.11 | 3.159 (2) | 168 |
C1—H1A···O1Wi | 0.93 | 2.44 | 3.121 (3) | 130 |
C10—H10B···N2 | 0.97 | 2.57 | 2.912 (3) | 101 |
C10—H10B···N6ii | 0.97 | 2.57 | 3.503 (4) | 161 |
C11—H11A···O2Wiii | 0.93 | 2.15 | 3.082 (3) | 178 |
C14—H14A···Cl1iv | 0.93 | 2.83 | 3.740 (2) | 166 |
C20—H20A···Cl1i | 0.97 | 2.71 | 3.666 (2) | 168 |
Symmetry codes: (i) −x, −y+1, −z+1; (ii) −x+1, −y+2, −z; (iii) −x+1, −y+1, −z+1; (iv) −x+1, −y+1, −z. |
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Many benzimidazole compounds are known to possess versatile pharmacological activities, such as antibacterial, antifungal, antihelmintic, antiallergic, antineoplastic, local analgesic, antihistaminic, vasodilator, hypotensive and spasmolytic activities (Carlsson et al., 2002; Del Poeta et al., 1998; Hall et al., 1998). In our previous studies (Çetinkaya et al., 1996; Küçükbay et al., 1995, 2001; Küçükbay & Durmaz, 1997), we also observed that many benzimidazole derivatives have shown considerable antibacterial and antifungal activity against standard strains, viz. Enterococcus faecalis (ATCC 29212), Staphylococcus aureus (ATCC 29213), Escherichia coli (ATCC25922), Pseudomonas aeruginosa (ATCC27853) and, yeast-like fungi Candida albicans and Candida tropicalis. In recent years, particularly bis-benzimidazole compounds have begun to attract particular interest because of their potential use in cancer therapy by DNA binding blocking purposes (Turner & Denny, 1996). The aim of this study was to elucidate the crystal structure of new bis-benzimidazole derivatives and compare with those of the related benzimidazole derivatives reported previously (Çetinkaya et al., 1994; Aydın et al., 1998, 1999; Íngeç et al., 1999; Öztürk et al., 2001).
A view of the title compound, (I), is shown in Fig. 1 and selected geometric parameters are listed in Table 1. In (I), two benzimidazolium rings are connected via atoms C8, C9 and C10. The average bond lengths and angles involving the (N2)C8/C9/C10/(N3) group [C—C = 1.507 (3) Å, C—N = 1.476 (3) Å and C—C—C = 112.1 (6)°] are consistent with those observed in bis(1-methyl-3-ethylbenzimidazolidine-2-ylium) tetrafluoroborate (Aydın et al., 1998). Within the five-membered ring, the bond lengths indicate a delocalized bonding, the N to central C1 and C11 atoms averaging 1.331 (3) Å. In 1-(2-ethoxyethyl)-3-(2-methoxyethyl)benzimidazolium chloride monohydrate (Öztürk et al., 2001), this value is 1.328 (7) Å.
In the molecule, the fused six- and five-membered ring units are essentially planar [maxiumum deviations are 0.022 (2) Å for C6 and 0.026 (2) Å for C14], but the cyano groups of two benzimidazol groups are bent out of plane on opposite sides of the fused rings. The benzimidazol groups are nearly normal to each other, the dihedral angle between their planes being 88.42 (4)°. The short contacts between the molecules and hydrogen bonds, calculated using PARST (Nardelli, 1995), are listed in Table 3.