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The title compound, C
8H
18N
2O
4S, is a useful buffer in the physiological pH range. In the crystal structure, the piperazine ring adopts a chair conformation. One weak intramolecular C—H
O hydrogen bond, together with one weak intermolecular C—H
O and two strong intermolecular O—H
N hydrogen bonds are present, the latter linking the molecules into a reticulation framework.
Supporting information
CCDC reference: 248794
Key indicators
- Single-crystal X-ray study
- T = 298 K
- Mean (C-C) = 0.003 Å
- R factor = 0.041
- wR factor = 0.115
- Data-to-parameter ratio = 13.6
checkCIF/PLATON results
No syntax errors found
No errors found in this datablock
Data collection: SMART (Bruker, 2000); cell refinement: SAINT (Bruker, 2000); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2000); program(s) used to refine structure: SHELXL97 (Sheldrick, 2000); molecular graphics: SHELXTL/PC (Sheldrick, 1999); software used to prepare material for publication: SHELXTL/PC.
2-[4-(2-Hydroxyethyl)piperazin-1-yl]ethanesulfonic acid
top
Crystal data top
C8H18N2O4S | F(000) = 1024 |
Mr = 238.30 | Dx = 1.445 Mg m−3 |
Orthorhombic, Pbca | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ac 2ab | Cell parameters from 12566 reflections |
a = 8.3813 (13) Å | θ = 2.4–27.0° |
b = 9.6623 (16) Å | µ = 0.29 mm−1 |
c = 27.056 (4) Å | T = 298 K |
V = 2191.1 (6) Å3 | Sheet, green |
Z = 8 | 0.58 × 0.58 × 0.06 mm |
Data collection top
SMART 1K CCD area-detector diffractometer | 1919 independent reflections |
Radiation source: fine-focus sealed tube | 1724 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.027 |
Detector resolution: 100x100 microns pixels mm-1 | θmax = 25.0°, θmin = 1.5° |
φ and ω scans | h = −9→7 |
Absorption correction: multi-scan (SADABS; Sheldrick, 2000) | k = −11→11 |
Tmin = 0.848, Tmax = 0.983 | l = −32→25 |
9743 measured reflections | |
Refinement top
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.041 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.115 | w = 1/[σ2(Fo2) + (0.0636P)2 + 1.4035P] where P = (Fo2 + 2Fc2)/3 |
S = 1.06 | (Δ/σ)max = 0.001 |
1919 reflections | Δρmax = 0.63 e Å−3 |
141 parameters | Δρmin = −0.32 e Å−3 |
0 restraints | Extinction correction: SHELXL97, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.0033 (6) |
Special details top
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes)
are estimated using the full covariance matrix. The cell e.s.d.'s are taken
into account individually in the estimation of e.s.d.'s in distances, angles
and torsion angles; correlations between e.s.d.'s in cell parameters are only
used when they are defined by crystal symmetry. An approximate (isotropic)
treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s.
planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor
wR and goodness of fit S are based on F2, conventional
R-factors R are based on F, with F set to zero for
negative F2. The threshold expression of F2 >
σ(F2) is used only for calculating R-factors(gt) etc.
and is not relevant to the choice of reflections for refinement.
R-factors based on F2 are statistically about twice as large
as those based on F, and R- factors based on ALL data will be
even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
S | 1.04860 (6) | 0.27595 (6) | 0.443761 (18) | 0.0285 (2) | |
O2 | 0.90393 (19) | 0.35559 (18) | 0.43881 (6) | 0.0446 (4) | |
O3 | 1.0642 (2) | 0.16138 (19) | 0.40993 (6) | 0.0562 (5) | |
O1 | 1.18966 (17) | 0.36491 (16) | 0.44371 (5) | 0.0354 (4) | |
H1 | 1.2620 | 0.3280 | 0.4255 | 0.080* | |
O4 | 0.7746 (2) | 0.33570 (17) | 0.78314 (6) | 0.0369 (4) | |
H4 | 0.699 (4) | 0.300 (3) | 0.7867 (11) | 0.055 (10)* | |
N1 | 0.96747 (19) | 0.25262 (17) | 0.59097 (6) | 0.0245 (4) | |
N2 | 0.97735 (19) | 0.20089 (17) | 0.69669 (6) | 0.0243 (4) | |
C1 | 1.0725 (2) | 0.1432 (2) | 0.61282 (7) | 0.0301 (5) | |
H1A | 1.1774 | 0.1815 | 0.6195 | 0.036* | |
H1B | 1.0848 | 0.0676 | 0.5895 | 0.036* | |
C2 | 1.0001 (3) | 0.0900 (2) | 0.66014 (7) | 0.0300 (5) | |
H2B | 0.8979 | 0.0475 | 0.6529 | 0.036* | |
H2C | 1.0691 | 0.0194 | 0.6740 | 0.036* | |
C3 | 0.8718 (3) | 0.3058 (2) | 0.67489 (7) | 0.0288 (5) | |
H3B | 0.8547 | 0.3797 | 0.6986 | 0.035* | |
H3C | 0.7691 | 0.2643 | 0.6675 | 0.035* | |
C4 | 0.9424 (3) | 0.3651 (2) | 0.62809 (7) | 0.0306 (5) | |
H4B | 0.8711 | 0.4345 | 0.6146 | 0.037* | |
H4C | 1.0436 | 0.4093 | 0.6355 | 0.037* | |
C5 | 0.9105 (3) | 0.1406 (2) | 0.74216 (7) | 0.0314 (5) | |
H5B | 0.9753 | 0.0617 | 0.7516 | 0.038* | |
H5C | 0.8041 | 0.1067 | 0.7351 | 0.038* | |
C6 | 1.0321 (3) | 0.3104 (2) | 0.54346 (8) | 0.0310 (5) | |
H6A | 1.1375 | 0.3487 | 0.5493 | 0.037* | |
H6B | 0.9635 | 0.3848 | 0.5322 | 0.037* | |
C7 | 0.9011 (3) | 0.2390 (2) | 0.78573 (8) | 0.0352 (5) | |
H7A | 0.8892 | 0.1851 | 0.8157 | 0.042* | |
H7B | 1.0010 | 0.2892 | 0.7881 | 0.042* | |
C8 | 1.0424 (2) | 0.2005 (2) | 0.50383 (8) | 0.0298 (5) | |
H8A | 0.9505 | 0.1397 | 0.5062 | 0.036* | |
H8B | 1.1375 | 0.1451 | 0.5090 | 0.036* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
S | 0.0287 (3) | 0.0340 (3) | 0.0229 (3) | −0.0010 (2) | 0.00217 (19) | 0.0004 (2) |
O2 | 0.0273 (8) | 0.0624 (11) | 0.0441 (10) | 0.0036 (8) | −0.0059 (6) | 0.0122 (8) |
O3 | 0.0884 (14) | 0.0468 (10) | 0.0334 (9) | −0.0092 (10) | 0.0119 (9) | −0.0114 (8) |
O1 | 0.0263 (8) | 0.0412 (9) | 0.0387 (8) | 0.0008 (7) | 0.0078 (6) | 0.0068 (7) |
O4 | 0.0315 (9) | 0.0391 (9) | 0.0400 (9) | −0.0023 (7) | 0.0075 (7) | −0.0035 (7) |
N1 | 0.0259 (9) | 0.0277 (9) | 0.0198 (8) | 0.0015 (6) | 0.0011 (6) | 0.0011 (7) |
N2 | 0.0250 (9) | 0.0263 (8) | 0.0217 (9) | 0.0016 (7) | 0.0009 (6) | 0.0018 (6) |
C1 | 0.0320 (11) | 0.0317 (11) | 0.0266 (11) | 0.0075 (9) | 0.0025 (8) | 0.0008 (9) |
C2 | 0.0364 (11) | 0.0254 (10) | 0.0282 (11) | 0.0037 (9) | 0.0028 (9) | 0.0016 (8) |
C3 | 0.0306 (11) | 0.0317 (10) | 0.0239 (10) | 0.0070 (9) | 0.0005 (8) | −0.0011 (8) |
C4 | 0.0387 (12) | 0.0257 (10) | 0.0273 (11) | 0.0053 (9) | −0.0008 (8) | 0.0008 (8) |
C5 | 0.0332 (11) | 0.0326 (11) | 0.0284 (11) | −0.0006 (9) | 0.0045 (9) | 0.0039 (9) |
C6 | 0.0384 (13) | 0.0300 (11) | 0.0245 (10) | −0.0039 (9) | 0.0031 (8) | 0.0043 (8) |
C7 | 0.0314 (11) | 0.0488 (13) | 0.0256 (11) | 0.0011 (10) | 0.0012 (9) | −0.0007 (9) |
C8 | 0.0332 (12) | 0.0316 (11) | 0.0245 (11) | −0.0007 (9) | 0.0037 (8) | 0.0027 (9) |
Geometric parameters (Å, º) top
S—O2 | 1.4424 (17) | C2—H2C | 0.9700 |
S—O3 | 1.4424 (18) | C3—C4 | 1.511 (3) |
S—O1 | 1.4617 (16) | C3—H3B | 0.9700 |
S—C8 | 1.782 (2) | C3—H3C | 0.9700 |
O1—H1 | 0.859 | C4—H4B | 0.9700 |
O4—C7 | 1.415 (3) | C4—H4C | 0.9700 |
O4—H4 | 0.73 (3) | C5—C7 | 1.516 (3) |
N1—C4 | 1.495 (3) | C5—H5B | 0.9700 |
N1—C1 | 1.498 (3) | C5—H5C | 0.9700 |
N1—C6 | 1.503 (3) | C6—C8 | 1.512 (3) |
N2—C3 | 1.469 (2) | C6—H6A | 0.9700 |
N2—C2 | 1.471 (3) | C6—H6B | 0.9700 |
N2—C5 | 1.472 (3) | C7—H7A | 0.9700 |
C1—C2 | 1.507 (3) | C7—H7B | 0.9700 |
C1—H1A | 0.9700 | C8—H8A | 0.9700 |
C1—H1B | 0.9700 | C8—H8B | 0.9700 |
C2—H2B | 0.9700 | | |
| | | |
O2—S—O3 | 115.27 (11) | H3B—C3—H3C | 108.0 |
O2—S—O1 | 111.48 (10) | N1—C4—C3 | 110.04 (16) |
O3—S—O1 | 112.17 (10) | N1—C4—H4B | 109.7 |
O2—S—C8 | 106.17 (10) | C3—C4—H4B | 109.7 |
O3—S—C8 | 105.49 (10) | N1—C4—H4C | 109.7 |
O1—S—C8 | 105.38 (9) | C3—C4—H4C | 109.7 |
S—O1—H1 | 109.09 | H4B—C4—H4C | 108.2 |
C7—O4—H4 | 110 (2) | N2—C5—C7 | 114.95 (17) |
C4—N1—C1 | 109.28 (15) | N2—C5—H5B | 108.5 |
C4—N1—C6 | 110.82 (16) | C7—C5—H5B | 108.5 |
C1—N1—C6 | 112.84 (15) | N2—C5—H5C | 108.5 |
C3—N2—C2 | 108.12 (15) | C7—C5—H5C | 108.5 |
C3—N2—C5 | 112.30 (16) | H5B—C5—H5C | 107.5 |
C2—N2—C5 | 108.86 (16) | N1—C6—C8 | 111.47 (17) |
N1—C1—C2 | 109.85 (16) | N1—C6—H6A | 109.3 |
N1—C1—H1A | 109.7 | C8—C6—H6A | 109.3 |
C2—C1—H1A | 109.7 | N1—C6—H6B | 109.3 |
N1—C1—H1B | 109.7 | C8—C6—H6B | 109.3 |
C2—C1—H1B | 109.7 | H6A—C6—H6B | 108.0 |
H1A—C1—H1B | 108.2 | O4—C7—C5 | 114.50 (17) |
N2—C2—C1 | 112.00 (17) | O4—C7—H7A | 108.6 |
N2—C2—H2B | 109.2 | C5—C7—H7A | 108.6 |
C1—C2—H2B | 109.2 | O4—C7—H7B | 108.6 |
N2—C2—H2C | 109.2 | C5—C7—H7B | 108.6 |
C1—C2—H2C | 109.2 | H7A—C7—H7B | 107.6 |
H2B—C2—H2C | 107.9 | C6—C8—S | 111.14 (14) |
N2—C3—C4 | 111.22 (17) | C6—C8—H8A | 109.4 |
N2—C3—H3B | 109.4 | S—C8—H8A | 109.4 |
C4—C3—H3B | 109.4 | C6—C8—H8B | 109.4 |
N2—C3—H3C | 109.4 | S—C8—H8B | 109.4 |
C4—C3—H3C | 109.4 | H8A—C8—H8B | 108.0 |
| | | |
C4—N1—C1—C2 | 56.4 (2) | C3—N2—C5—C7 | −68.2 (2) |
C6—N1—C1—C2 | −179.83 (17) | C2—N2—C5—C7 | 172.14 (17) |
C3—N2—C2—C1 | 59.3 (2) | C4—N1—C6—C8 | −174.23 (16) |
C5—N2—C2—C1 | −178.49 (17) | C1—N1—C6—C8 | 62.8 (2) |
N1—C1—C2—N2 | −58.8 (2) | N2—C5—C7—O4 | 76.5 (2) |
C2—N2—C3—C4 | −59.4 (2) | N1—C6—C8—S | 159.09 (14) |
C5—N2—C3—C4 | −179.54 (17) | O2—S—C8—C6 | −59.31 (17) |
C1—N1—C4—C3 | −57.1 (2) | O3—S—C8—C6 | 177.90 (15) |
C6—N1—C4—C3 | 177.92 (17) | O1—S—C8—C6 | 59.06 (16) |
N2—C3—C4—N1 | 59.8 (2) | | |
Hydrogen-bond geometry (Å, º) top
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1···N1i | 0.86 | 1.94 | 2.755 (2) | 158 |
O4—H4···N2ii | 0.73 (3) | 2.14 (3) | 2.864 (2) | 175 (3) |
C1—H1A···O2i | 0.97 | 2.49 | 3.109 (3) | 121 |
C3—H3B···O4 | 0.97 | 2.42 | 3.054 (2) | 122 |
Symmetry codes: (i) x+1/2, −y+1/2, −z+1; (ii) x−1/2, y, −z+3/2. |
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