Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S1600536807025640/om2127sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S1600536807025640/om2127Isup2.hkl |
CCDC reference: 654699
Key indicators
- Single-crystal X-ray study
- T = 150 K
- Mean (C-C) = 0.003 Å
- R factor = 0.036
- wR factor = 0.097
- Data-to-parameter ratio = 15.7
checkCIF/PLATON results
No syntax errors found
Alert level C PLAT042_ALERT_1_C Calc. and Rep. MoietyFormula Strings Differ .... ? PLAT125_ALERT_4_C No _symmetry_space_group_name_Hall Given ....... ? PLAT154_ALERT_1_C The su's on the Cell Angles are Equal (x 10000) 200 Deg. PLAT417_ALERT_2_C Short Inter D-H..H-D H10B .. H14A .. 2.11 Ang. PLAT432_ALERT_2_C Short Inter X...Y Contact C8 .. C10 .. 3.10 Ang. PLAT790_ALERT_4_C Centre of Gravity not Within Unit Cell: Resd. # 7 H2 O
Alert level G FORMU01_ALERT_1_G There is a discrepancy between the atom counts in the _chemical_formula_sum and _chemical_formula_moiety. This is usually due to the moiety formula being in the wrong format. Atom count from _chemical_formula_sum: C32 H52 Co3 N6 O30 Atom count from _chemical_formula_moiety:C32 H52 Co3 N2 O30 PLAT794_ALERT_5_G Check Predicted Bond Valency for Co1 (2) 2.11 PLAT794_ALERT_5_G Check Predicted Bond Valency for Co2 (2) 1.88
0 ALERT level A = In general: serious problem 0 ALERT level B = Potentially serious problem 6 ALERT level C = Check and explain 3 ALERT level G = General alerts; check 3 ALERT type 1 CIF construction/syntax error, inconsistent or missing data 2 ALERT type 2 Indicator that the structure model may be wrong or deficient 0 ALERT type 3 Indicator that the structure quality may be low 2 ALERT type 4 Improvement, methodology, query or suggestion 2 ALERT type 5 Informative message, check
The reaction between Co(NO3)2·6H2O and the proton-transfer compound (GH)2(pydc) (G is guanidine) in a 1:2 molar ratio leads to the formation of red crystals of (GH)2[Co(H2O)6][Co(pydc)2]2 (Aghabozorg et al., 2006a).
For related literature, see: Aghabozorg et al. (2006b, 2006c, 2006d, 2006e, 2006f, 2007); Manteghi et al. (2007).
The proton transfer compound, (pipzH2)(pydc), was prepared by the reaction of pyridine-2,6-dicarboxylic acid, pydcH2, with piperazine, (pipz). The reaction between Co(NO3)2·6H2O (143 mg, 0.5 mmol) in water (25 ml) and the proton transfer compound, (pipzH2)(pydc) (253 mg, 1.0 mmol) in water (25 ml), in a 1:2 molar ratio was carried out and a purple crystalline compound was obtained by the slow evaporation of the solvent at room temperature.
Hydrogen atoms were positioned geometrically and refined with a riding model (including torsional freedom for methyl groups), with C—H = 0.95–0.98 Å, and with U(H) constrained to be 1.2 (1.5 for methyl groups) times Ueq of the carrier atom.
Non-covalent interactions including hydrogen bonds are of great importance in stabilizing the structures of different compounds in solid state. We have so far synthesized several proton transfer compounds (Aghabozorg et al., 2006b; Manteghi et al., 2007) and their metal-organic complexes (Aghabozorg et al., 2006c; Aghabozorg et al., 2006 d; Aghabozorg et al., 2006 e; Aghabozorg et al., 2007). A wide range of various hydrogen bonds was observed in these compounds and water molecules were involved in hydrogen bonding formation of some of these structures.
Here, we report on the synthesis and X-ray crystal structure of the title compound, (I). The molecular structure of the compound (I) is shown in Fig. 1. The intermolecular hydrogen bond distances are listed in Table 1. This compound crystallizes in the triclinic system, space group P 1 with one formula in the unit cell. The most important feature of the title compound is the formation of both anionic [Co(pydc)2]2- and cationic [Co(H2O)6]2+ complexes (site symmetry 1), and (pipzH2)2+ ion (site symmetry 1), simultaneously. In the anionic complex, [Co(pydc)2]2-, the metal ion is hexacoordinated by two nitrogen atoms N1, and N2 and four oxygen atoms O2, O3, O6 and O7 of carboxylate groups of two (pydc)2- fragments which act as tridentate ligands. N1 and N2 atoms of the two (pydc)2- fragments occupy the axial positions, while oxygen atoms form the equatorial plane. The N1—Co2—N2 angle revealed with a 14.88° deviation from linearity.
The mean Co—N and Co—O bond lengths for Co2 are 2.0147 (18) and 2.1575 (17) Å, respectively and are consistent with the corresponding data reported in the literature (Aghabozorg et al., 2006a). According to bond lengths, bond and torsion angles, arrangement of the six donor atoms around Co2 is distorted octahedral.
The dihedral angel between the two planes of Co2N2O6 and N2Co2O2 [86.81 (9)°] indicate that two dianionic (pydc)2- units are almost perpendicular to each other.
In the cationic complex, [Co(H2O)6]2+, the metal ion is hexacoordinated by six oxygen atoms of water molecules with a nearly octahedral geometry around the central atom. The extensive O—H···O, N—H···O and C—H···O hydrogen bonds between [Co(H2O)6]2+, [Co(pydc)2]2-, (pipzH2)2+ and uncoordinated water molecules play an important role in stabilizing and architecture of the crystal (Table 1). The intermolecular forces in this compound consist of hydrogen bonding and ion pairing as well as π-π stacking between anion-anion fragments (3.5277 (15) Å -x, -y + 2, -z + 1) (Fig. 2) (Aghabozorg, et al., 2006f). These interactions result in the formation of a supramolecular structure based on a hydrogen-bonded network.
The reaction between Co(NO3)2·6H2O and the proton-transfer compound (GH)2(pydc) (G is guanidine) in a 1:2 molar ratio leads to the formation of red crystals of (GH)2[Co(H2O)6][Co(pydc)2]2 (Aghabozorg et al., 2006a).
For related literature, see: Aghabozorg et al. (2006b, 2006c, 2006d, 2006e, 2006f, 2007); Manteghi et al. (2007).
Data collection: SMART (Bruker, 1998); cell refinement: SMART; data reduction: SAINT (Bruker, 1998); program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: SHELXTL (Bruker, 2005); software used to prepare material for publication: SHELXTL.
(C4H12N2)[Co(H2O)6][Co(C7H3O4)2]2·8H2O | Z = 1 |
Mr = 1177.59 | F(000) = 607 |
Triclinic, P1 | Dx = 1.710 Mg m−3 |
a = 8.4682 (10) Å | Mo Kα radiation, λ = 0.71073 Å |
b = 11.9287 (14) Å | Cell parameters from 7659 reflections |
c = 12.9091 (15) Å | θ = 2.5–27.5° |
α = 63.478 (2)° | µ = 1.18 mm−1 |
β = 78.683 (2)° | T = 150 K |
γ = 83.063 (2)° | Block, purple |
V = 1143.3 (2) Å3 | 0.50 × 0.48 × 0.20 mm |
Bruker SMART 1000 diffractometer | 5061 independent reflections |
Radiation source: fine-focus sealed tube | 4261 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.025 |
Detector resolution: 100 pixels mm-1 | θmax = 27.6°, θmin = 1.8° |
ω scans | h = −10→10 |
Absorption correction: multi-scan (SADABS; Bruker, 1998) | k = −15→15 |
Tmin = 0.589, Tmax = 0.798 | l = −16→16 |
9953 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.036 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.097 | H-atom parameters constrained |
S = 1.06 | w = 1/[σ2(Fo2) + (0.0549P)2 + 0.4524P] where P = (Fo2 + 2Fc2)/3 |
5061 reflections | (Δ/σ)max < 0.001 |
322 parameters | Δρmax = 0.59 e Å−3 |
0 restraints | Δρmin = −0.62 e Å−3 |
(C4H12N2)[Co(H2O)6][Co(C7H3O4)2]2·8H2O | γ = 83.063 (2)° |
Mr = 1177.59 | V = 1143.3 (2) Å3 |
Triclinic, P1 | Z = 1 |
a = 8.4682 (10) Å | Mo Kα radiation |
b = 11.9287 (14) Å | µ = 1.18 mm−1 |
c = 12.9091 (15) Å | T = 150 K |
α = 63.478 (2)° | 0.50 × 0.48 × 0.20 mm |
β = 78.683 (2)° |
Bruker SMART 1000 diffractometer | 5061 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 1998) | 4261 reflections with I > 2σ(I) |
Tmin = 0.589, Tmax = 0.798 | Rint = 0.025 |
9953 measured reflections |
R[F2 > 2σ(F2)] = 0.036 | 0 restraints |
wR(F2) = 0.097 | H-atom parameters constrained |
S = 1.06 | Δρmax = 0.59 e Å−3 |
5061 reflections | Δρmin = −0.62 e Å−3 |
322 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Co1 | 0.0000 | 0.5000 | 0.5000 | 0.01842 (11) | |
Co2 | 0.22003 (4) | 0.25036 (2) | 0.23467 (2) | 0.01670 (9) | |
N1 | 0.2066 (2) | 0.08823 (16) | 0.38145 (15) | 0.0165 (4) | |
N2 | 0.2792 (2) | 0.38844 (16) | 0.07167 (15) | 0.0163 (4) | |
N3 | −0.1311 (2) | 0.04921 (17) | 0.05881 (16) | 0.0210 (4) | |
H3B | −0.1022 | 0.0221 | 0.1301 | 0.025* | |
H3A | −0.2268 | 0.0916 | 0.0558 | 0.025* | |
O1 | −0.0037 (2) | −0.05806 (14) | 0.26917 (13) | 0.0238 (3) | |
O2 | 0.0688 (2) | 0.13971 (13) | 0.20204 (13) | 0.0224 (3) | |
O3 | 0.32424 (19) | 0.29185 (13) | 0.35241 (13) | 0.0201 (3) | |
O4 | 0.4158 (2) | 0.19928 (15) | 0.52370 (14) | 0.0243 (4) | |
O5 | −0.03682 (19) | 0.58947 (14) | 0.11407 (14) | 0.0237 (3) | |
O6 | 0.04162 (19) | 0.39324 (13) | 0.22919 (13) | 0.0204 (3) | |
O7 | 0.4431 (2) | 0.17914 (14) | 0.16162 (13) | 0.0238 (4) | |
O8 | 0.61077 (19) | 0.21798 (14) | −0.00623 (13) | 0.0242 (4) | |
O9 | −0.2103 (2) | 0.48680 (15) | 0.61912 (15) | 0.0303 (4) | |
H9B | −0.2614 | 0.5548 | 0.6339 | 0.036* | |
H9A | −0.2648 | 0.4103 | 0.6613 | 0.036* | |
O10 | 0.1082 (2) | 0.58551 (14) | 0.57348 (14) | 0.0229 (3) | |
H10B | 0.2198 | 0.5651 | 0.5762 | 0.028* | |
H10A | 0.0612 | 0.5788 | 0.6491 | 0.028* | |
O11 | 0.0824 (2) | 0.32105 (14) | 0.61321 (15) | 0.0293 (4) | |
H11B | 0.1654 | 0.3186 | 0.6542 | 0.035* | |
H11A | 0.0526 | 0.2378 | 0.6368 | 0.035* | |
O12 | 0.5233 (2) | −0.07835 (16) | 0.24549 (15) | 0.0348 (4) | |
H12B | 0.4914 | 0.0070 | 0.2255 | 0.042* | |
H12A | 0.5606 | −0.1126 | 0.3188 | 0.042* | |
O13 | 0.4299 (2) | 0.5784 (2) | 0.5563 (3) | 0.0603 (7) | |
H13B | 0.4766 | 0.5256 | 0.5199 | 0.072* | |
H13A | 0.4914 | 0.6496 | 0.5330 | 0.072* | |
O14 | 0.2727 (3) | 0.3327 (2) | 0.7521 (2) | 0.0516 (6) | |
H14A | 0.3261 | 0.4091 | 0.7047 | 0.062* | |
H14B | 0.1995 | 0.3646 | 0.7995 | 0.062* | |
O15 | 0.6190 (3) | 0.27236 (17) | −0.23945 (16) | 0.0410 (5) | |
H15D | 0.5929 | 0.1973 | −0.2399 | 0.049* | |
H15C | 0.6323 | 0.2384 | −0.1595 | 0.049* | |
C1 | 0.0628 (3) | 0.02551 (19) | 0.27641 (18) | 0.0193 (4) | |
C2 | 0.1404 (3) | −0.00853 (18) | 0.38368 (18) | 0.0175 (4) | |
C3 | 0.1429 (3) | −0.12571 (19) | 0.47785 (19) | 0.0207 (5) | |
H3 | 0.0966 | −0.1949 | 0.4788 | 0.025* | |
C4 | 0.2147 (3) | −0.1393 (2) | 0.57052 (19) | 0.0226 (5) | |
H4 | 0.2170 | −0.2185 | 0.6366 | 0.027* | |
C5 | 0.2834 (3) | −0.03764 (19) | 0.56740 (19) | 0.0196 (4) | |
H5 | 0.3331 | −0.0459 | 0.6305 | 0.024* | |
C6 | 0.2773 (3) | 0.07649 (19) | 0.46932 (18) | 0.0169 (4) | |
C7 | 0.3451 (3) | 0.19821 (19) | 0.44923 (18) | 0.0182 (4) | |
C8 | 0.0529 (3) | 0.49527 (19) | 0.13425 (19) | 0.0184 (4) | |
C9 | 0.1906 (3) | 0.49543 (18) | 0.04015 (18) | 0.0168 (4) | |
C10 | 0.2280 (3) | 0.59417 (19) | −0.07070 (19) | 0.0197 (4) | |
H10 | 0.1656 | 0.6706 | −0.0934 | 0.024* | |
C11 | 0.3584 (3) | 0.5779 (2) | −0.14681 (18) | 0.0208 (5) | |
H11 | 0.3864 | 0.6439 | −0.2228 | 0.025* | |
C12 | 0.4488 (3) | 0.4653 (2) | −0.11257 (19) | 0.0204 (4) | |
H12 | 0.5380 | 0.4530 | −0.1645 | 0.024* | |
C13 | 0.4050 (3) | 0.37179 (19) | −0.00081 (18) | 0.0172 (4) | |
C14 | 0.4942 (3) | 0.24579 (19) | 0.05474 (19) | 0.0192 (4) | |
C15 | −0.0037 (3) | 0.1319 (2) | −0.0319 (2) | 0.0249 (5) | |
H15B | 0.0112 | 0.2018 | −0.0137 | 0.030* | |
H15A | −0.0383 | 0.1681 | −0.1098 | 0.030* | |
C16 | 0.1531 (3) | 0.0588 (2) | −0.0353 (2) | 0.0243 (5) | |
H16B | 0.2351 | 0.1139 | −0.0976 | 0.029* | |
H16A | 0.1920 | 0.0278 | 0.0407 | 0.029* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Co1 | 0.0220 (2) | 0.01281 (19) | 0.0190 (2) | −0.00347 (15) | 0.00298 (16) | −0.00748 (16) |
Co2 | 0.02253 (17) | 0.01160 (14) | 0.01341 (15) | −0.00183 (11) | −0.00085 (11) | −0.00368 (11) |
N1 | 0.0185 (9) | 0.0144 (8) | 0.0159 (8) | −0.0020 (7) | −0.0002 (7) | −0.0067 (7) |
N2 | 0.0190 (9) | 0.0137 (8) | 0.0152 (8) | −0.0009 (7) | −0.0023 (7) | −0.0055 (7) |
N3 | 0.0226 (10) | 0.0197 (9) | 0.0189 (9) | 0.0052 (7) | −0.0026 (7) | −0.0086 (7) |
O1 | 0.0345 (9) | 0.0176 (7) | 0.0211 (8) | −0.0064 (7) | −0.0063 (7) | −0.0079 (6) |
O2 | 0.0332 (9) | 0.0150 (7) | 0.0180 (7) | −0.0048 (6) | −0.0057 (6) | −0.0047 (6) |
O3 | 0.0271 (8) | 0.0146 (7) | 0.0173 (7) | −0.0036 (6) | −0.0031 (6) | −0.0054 (6) |
O4 | 0.0292 (9) | 0.0227 (8) | 0.0234 (8) | −0.0021 (7) | −0.0093 (7) | −0.0097 (6) |
O5 | 0.0250 (8) | 0.0154 (7) | 0.0282 (8) | 0.0028 (6) | −0.0015 (7) | −0.0093 (6) |
O6 | 0.0249 (8) | 0.0161 (7) | 0.0162 (7) | −0.0003 (6) | −0.0001 (6) | −0.0050 (6) |
O7 | 0.0301 (9) | 0.0169 (7) | 0.0172 (7) | 0.0036 (6) | −0.0003 (6) | −0.0035 (6) |
O8 | 0.0243 (9) | 0.0231 (8) | 0.0205 (8) | 0.0070 (6) | 0.0002 (6) | −0.0088 (6) |
O9 | 0.0312 (9) | 0.0205 (8) | 0.0359 (9) | −0.0071 (7) | 0.0143 (8) | −0.0159 (7) |
O10 | 0.0258 (8) | 0.0220 (8) | 0.0232 (8) | −0.0054 (6) | 0.0027 (6) | −0.0133 (6) |
O11 | 0.0369 (10) | 0.0152 (7) | 0.0337 (9) | −0.0031 (7) | −0.0124 (8) | −0.0055 (7) |
O12 | 0.0580 (13) | 0.0203 (8) | 0.0270 (9) | 0.0056 (8) | −0.0138 (8) | −0.0099 (7) |
O13 | 0.0295 (11) | 0.0450 (12) | 0.122 (2) | −0.0093 (9) | 0.0042 (13) | −0.0545 (14) |
O14 | 0.0386 (12) | 0.0798 (16) | 0.0611 (14) | 0.0221 (11) | −0.0193 (10) | −0.0538 (13) |
O15 | 0.0647 (14) | 0.0318 (10) | 0.0238 (9) | −0.0193 (9) | −0.0017 (9) | −0.0077 (8) |
C1 | 0.0230 (11) | 0.0175 (10) | 0.0160 (10) | −0.0014 (8) | 0.0004 (8) | −0.0073 (8) |
C2 | 0.0189 (10) | 0.0147 (9) | 0.0168 (10) | −0.0012 (8) | 0.0009 (8) | −0.0064 (8) |
C3 | 0.0232 (11) | 0.0147 (9) | 0.0218 (11) | −0.0036 (8) | −0.0011 (9) | −0.0061 (8) |
C4 | 0.0256 (12) | 0.0151 (10) | 0.0199 (10) | 0.0002 (9) | −0.0021 (9) | −0.0019 (8) |
C5 | 0.0203 (11) | 0.0186 (10) | 0.0177 (10) | 0.0009 (8) | −0.0030 (8) | −0.0063 (8) |
C6 | 0.0160 (10) | 0.0175 (10) | 0.0155 (9) | 0.0000 (8) | 0.0009 (8) | −0.0072 (8) |
C7 | 0.0172 (10) | 0.0178 (10) | 0.0199 (10) | −0.0004 (8) | 0.0008 (8) | −0.0100 (8) |
C8 | 0.0206 (11) | 0.0154 (9) | 0.0212 (10) | −0.0035 (8) | −0.0029 (8) | −0.0093 (8) |
C9 | 0.0204 (10) | 0.0133 (9) | 0.0182 (10) | −0.0024 (8) | −0.0046 (8) | −0.0071 (8) |
C10 | 0.0235 (11) | 0.0142 (9) | 0.0203 (10) | −0.0013 (8) | −0.0062 (9) | −0.0053 (8) |
C11 | 0.0259 (12) | 0.0166 (10) | 0.0156 (10) | −0.0045 (9) | −0.0029 (8) | −0.0027 (8) |
C12 | 0.0212 (11) | 0.0203 (10) | 0.0178 (10) | −0.0026 (8) | −0.0011 (8) | −0.0070 (8) |
C13 | 0.0197 (10) | 0.0145 (9) | 0.0168 (10) | −0.0010 (8) | −0.0021 (8) | −0.0066 (8) |
C14 | 0.0209 (11) | 0.0166 (10) | 0.0201 (10) | 0.0010 (8) | −0.0051 (8) | −0.0076 (8) |
C15 | 0.0363 (14) | 0.0130 (9) | 0.0214 (11) | −0.0015 (9) | 0.0004 (10) | −0.0057 (8) |
C16 | 0.0256 (12) | 0.0251 (11) | 0.0242 (11) | −0.0084 (9) | 0.0005 (9) | −0.0123 (9) |
Co1—O10i | 2.0522 (16) | O11—H11A | 0.9499 |
Co1—O10 | 2.0522 (16) | O12—H12B | 0.9500 |
Co1—O9i | 2.0824 (16) | O12—H12A | 0.9500 |
Co1—O9 | 2.0824 (16) | O13—H13B | 0.9499 |
Co1—O11 | 2.1056 (16) | O13—H13A | 0.9500 |
Co1—O11i | 2.1056 (15) | O14—H14A | 0.9501 |
Co2—N1 | 2.0098 (17) | O14—H14B | 0.9499 |
Co2—N2 | 2.0204 (17) | O15—H15D | 0.9499 |
Co2—O6 | 2.1224 (15) | O15—H15C | 0.9501 |
Co2—O3 | 2.1534 (16) | C1—C2 | 1.518 (3) |
Co2—O2 | 2.1623 (16) | C2—C3 | 1.385 (3) |
Co2—O7 | 2.1927 (16) | C3—C4 | 1.384 (3) |
N1—C2 | 1.330 (3) | C3—H3 | 0.9500 |
N1—C6 | 1.330 (3) | C4—C5 | 1.388 (3) |
N2—C13 | 1.332 (3) | C4—H4 | 0.9500 |
N2—C9 | 1.335 (3) | C5—C6 | 1.389 (3) |
N3—C16ii | 1.488 (3) | C5—H5 | 0.9500 |
N3—C15 | 1.495 (3) | C6—C7 | 1.520 (3) |
N3—H3B | 0.9024 | C8—C9 | 1.510 (3) |
N3—H3A | 0.9001 | C9—C10 | 1.394 (3) |
O1—C1 | 1.249 (3) | C10—C11 | 1.384 (3) |
O2—C1 | 1.269 (2) | C10—H10 | 0.9500 |
O3—C7 | 1.278 (3) | C11—C12 | 1.393 (3) |
O4—C7 | 1.233 (3) | C11—H11 | 0.9500 |
O5—C8 | 1.232 (3) | C12—C13 | 1.384 (3) |
O6—C8 | 1.282 (2) | C12—H12 | 0.9500 |
O7—C14 | 1.262 (3) | C13—C14 | 1.523 (3) |
O8—C14 | 1.246 (3) | C15—C16 | 1.503 (3) |
O9—H9B | 0.9500 | C15—H15B | 0.9900 |
O9—H9A | 0.9499 | C15—H15A | 0.9900 |
O10—H10B | 0.9501 | C16—N3ii | 1.488 (3) |
O10—H10A | 0.9501 | C16—H16B | 0.9900 |
O11—H11B | 0.9501 | C16—H16A | 0.9900 |
O10i—Co1—O10 | 180.000 (1) | H14A—O14—H14B | 95.2 |
O10i—Co1—O9i | 89.89 (7) | H15D—O15—H15C | 98.0 |
O10—Co1—O9i | 90.11 (7) | O1—C1—O2 | 125.5 (2) |
O10i—Co1—O9 | 90.11 (7) | O1—C1—C2 | 118.72 (18) |
O10—Co1—O9 | 89.89 (7) | O2—C1—C2 | 115.76 (19) |
O9i—Co1—O9 | 180.000 (1) | N1—C2—C3 | 121.1 (2) |
O10i—Co1—O11 | 88.04 (7) | N1—C2—C1 | 113.09 (17) |
O10—Co1—O11 | 91.96 (7) | C3—C2—C1 | 125.8 (2) |
O9i—Co1—O11 | 88.93 (7) | C4—C3—C2 | 118.2 (2) |
O9—Co1—O11 | 91.07 (7) | C4—C3—H3 | 120.9 |
O10i—Co1—O11i | 91.96 (7) | C2—C3—H3 | 120.9 |
O10—Co1—O11i | 88.04 (7) | C3—C4—C5 | 120.31 (19) |
O9i—Co1—O11i | 91.07 (7) | C3—C4—H4 | 119.8 |
O9—Co1—O11i | 88.93 (7) | C5—C4—H4 | 119.8 |
O11—Co1—O11i | 180.0 | C4—C5—C6 | 118.0 (2) |
N1—Co2—N2 | 165.15 (7) | C4—C5—H5 | 121.0 |
N1—Co2—O6 | 117.76 (6) | C6—C5—H5 | 121.0 |
N2—Co2—O6 | 76.99 (6) | N1—C6—C5 | 120.9 (2) |
N1—Co2—O3 | 76.50 (6) | N1—C6—C7 | 113.00 (17) |
N2—Co2—O3 | 107.36 (6) | C5—C6—C7 | 126.0 (2) |
O6—Co2—O3 | 87.84 (6) | O4—C7—O3 | 125.7 (2) |
N1—Co2—O2 | 76.73 (6) | O4—C7—C6 | 119.32 (18) |
N2—Co2—O2 | 101.16 (7) | O3—C7—C6 | 114.95 (19) |
O6—Co2—O2 | 95.55 (6) | O5—C8—O6 | 126.4 (2) |
O3—Co2—O2 | 151.30 (6) | O5—C8—C9 | 118.87 (18) |
N1—Co2—O7 | 89.59 (6) | O6—C8—C9 | 114.73 (18) |
N2—Co2—O7 | 75.79 (6) | N2—C9—C10 | 120.6 (2) |
O6—Co2—O7 | 152.52 (6) | N2—C9—C8 | 113.56 (17) |
O3—Co2—O7 | 96.68 (6) | C10—C9—C8 | 125.86 (19) |
O2—Co2—O7 | 93.31 (6) | C11—C10—C9 | 118.23 (19) |
C2—N1—C6 | 121.47 (18) | C11—C10—H10 | 120.9 |
C2—N1—Co2 | 118.78 (14) | C9—C10—H10 | 120.9 |
C6—N1—Co2 | 119.43 (14) | C10—C11—C12 | 120.36 (19) |
C13—N2—C9 | 121.70 (18) | C10—C11—H11 | 119.8 |
C13—N2—Co2 | 119.90 (14) | C12—C11—H11 | 119.8 |
C9—N2—Co2 | 118.39 (14) | C13—C12—C11 | 118.1 (2) |
C16ii—N3—C15 | 110.72 (17) | C13—C12—H12 | 120.9 |
C16ii—N3—H3B | 110.6 | C11—C12—H12 | 120.9 |
C15—N3—H3B | 108.7 | N2—C13—C12 | 121.02 (19) |
C16ii—N3—H3A | 106.0 | N2—C13—C14 | 113.12 (18) |
C15—N3—H3A | 110.2 | C12—C13—C14 | 125.8 (2) |
H3B—N3—H3A | 110.6 | O8—C14—O7 | 125.70 (19) |
C1—O2—Co2 | 114.35 (14) | O8—C14—C13 | 118.81 (19) |
C7—O3—Co2 | 115.43 (14) | O7—C14—C13 | 115.48 (19) |
C8—O6—Co2 | 116.30 (13) | N3—C15—C16 | 110.58 (17) |
C14—O7—Co2 | 115.18 (13) | N3—C15—H15B | 109.5 |
Co1—O9—H9B | 124.4 | C16—C15—H15B | 109.5 |
Co1—O9—H9A | 120.9 | N3—C15—H15A | 109.5 |
H9B—O9—H9A | 114.8 | C16—C15—H15A | 109.5 |
Co1—O10—H10B | 115.3 | H15B—C15—H15A | 108.1 |
Co1—O10—H10A | 118.6 | N3ii—C16—C15 | 110.06 (19) |
H10B—O10—H10A | 106.0 | N3ii—C16—H16B | 109.6 |
Co1—O11—H11B | 116.5 | C15—C16—H16B | 109.6 |
Co1—O11—H11A | 134.4 | N3ii—C16—H16A | 109.6 |
H11B—O11—H11A | 109.0 | C15—C16—H16A | 109.6 |
H12B—O12—H12A | 108.2 | H16B—C16—H16A | 108.2 |
H13B—O13—H13A | 112.9 | ||
N2—Co2—N1—C2 | −74.0 (3) | O2—C1—C2—N1 | −1.3 (3) |
O6—Co2—N1—C2 | 98.84 (16) | O1—C1—C2—C3 | −1.1 (3) |
O3—Co2—N1—C2 | 179.05 (17) | O2—C1—C2—C3 | 177.4 (2) |
O2—Co2—N1—C2 | 9.51 (15) | N1—C2—C3—C4 | 0.7 (3) |
O7—Co2—N1—C2 | −83.98 (16) | C1—C2—C3—C4 | −177.9 (2) |
N2—Co2—N1—C6 | 99.7 (3) | C2—C3—C4—C5 | −0.7 (3) |
O6—Co2—N1—C6 | −87.52 (16) | C3—C4—C5—C6 | 0.1 (3) |
O3—Co2—N1—C6 | −7.31 (15) | C2—N1—C6—C5 | −0.5 (3) |
O2—Co2—N1—C6 | −176.85 (17) | Co2—N1—C6—C5 | −173.96 (16) |
O7—Co2—N1—C6 | 89.66 (16) | C2—N1—C6—C7 | 180.00 (18) |
N1—Co2—N2—C13 | −5.8 (4) | Co2—N1—C6—C7 | 6.5 (2) |
O6—Co2—N2—C13 | −179.31 (17) | C4—C5—C6—N1 | 0.5 (3) |
O3—Co2—N2—C13 | 97.16 (17) | C4—C5—C6—C7 | 180.0 (2) |
O2—Co2—N2—C13 | −86.12 (17) | Co2—O3—C7—O4 | 173.03 (17) |
O7—Co2—N2—C13 | 4.49 (16) | Co2—O3—C7—C6 | −5.8 (2) |
N1—Co2—N2—C9 | 174.9 (2) | N1—C6—C7—O4 | −178.97 (19) |
O6—Co2—N2—C9 | 1.46 (16) | C5—C6—C7—O4 | 1.6 (3) |
O3—Co2—N2—C9 | −82.07 (17) | N1—C6—C7—O3 | 0.0 (3) |
O2—Co2—N2—C9 | 94.65 (16) | C5—C6—C7—O3 | −179.5 (2) |
O7—Co2—N2—C9 | −174.74 (17) | Co2—O6—C8—O5 | −179.05 (18) |
N1—Co2—O2—C1 | −9.99 (15) | Co2—O6—C8—C9 | 1.4 (2) |
N2—Co2—O2—C1 | 154.97 (15) | C13—N2—C9—C10 | −0.2 (3) |
O6—Co2—O2—C1 | −127.24 (15) | Co2—N2—C9—C10 | 179.05 (16) |
O3—Co2—O2—C1 | −31.6 (2) | C13—N2—C9—C8 | 179.58 (19) |
O7—Co2—O2—C1 | 78.80 (15) | Co2—N2—C9—C8 | −1.2 (2) |
N1—Co2—O3—C7 | 7.07 (15) | O5—C8—C9—N2 | −179.8 (2) |
N2—Co2—O3—C7 | −158.05 (15) | O6—C8—C9—N2 | −0.2 (3) |
O6—Co2—O3—C7 | 126.30 (15) | O5—C8—C9—C10 | −0.1 (3) |
O2—Co2—O3—C7 | 28.7 (2) | O6—C8—C9—C10 | 179.6 (2) |
O7—Co2—O3—C7 | −80.89 (15) | N2—C9—C10—C11 | 0.2 (3) |
N1—Co2—O6—C8 | −179.67 (15) | C8—C9—C10—C11 | −179.5 (2) |
N2—Co2—O6—C8 | −1.55 (15) | C9—C10—C11—C12 | 0.1 (3) |
O3—Co2—O6—C8 | 106.82 (15) | C10—C11—C12—C13 | −0.5 (3) |
O2—Co2—O6—C8 | −101.75 (15) | C9—N2—C13—C12 | −0.3 (3) |
O7—Co2—O6—C8 | 6.5 (2) | Co2—N2—C13—C12 | −179.48 (16) |
N1—Co2—O7—C14 | 170.69 (16) | C9—N2—C13—C14 | 177.03 (19) |
N2—Co2—O7—C14 | −6.67 (16) | Co2—N2—C13—C14 | −2.2 (2) |
O6—Co2—O7—C14 | −14.7 (2) | C11—C12—C13—N2 | 0.6 (3) |
O3—Co2—O7—C14 | −112.95 (16) | C11—C12—C13—C14 | −176.3 (2) |
O2—Co2—O7—C14 | 94.01 (16) | Co2—O7—C14—O8 | −173.99 (19) |
Co2—O2—C1—O1 | −172.74 (18) | Co2—O7—C14—C13 | 7.5 (2) |
Co2—O2—C1—C2 | 8.9 (2) | N2—C13—C14—O8 | 177.5 (2) |
C6—N1—C2—C3 | −0.1 (3) | C12—C13—C14—O8 | −5.4 (3) |
Co2—N1—C2—C3 | 173.36 (16) | N2—C13—C14—O7 | −3.9 (3) |
C6—N1—C2—C1 | 178.64 (18) | C12—C13—C14—O7 | 173.3 (2) |
Co2—N1—C2—C1 | −7.9 (2) | C16ii—N3—C15—C16 | −57.7 (3) |
O1—C1—C2—N1 | −179.8 (2) | N3—C15—C16—N3ii | 57.3 (3) |
Symmetry codes: (i) −x, −y+1, −z+1; (ii) −x, −y, −z. |
D—H···A | D—H | H···A | D···A | D—H···A |
N3—H3B···O1 | 0.90 | 1.92 | 2.808 (2) | 167 |
N3—H3A···O8iii | 0.90 | 1.91 | 2.772 (2) | 159 |
O9—H9B···O3i | 0.95 | 1.92 | 2.855 (2) | 168 |
O9—H9A···O15iv | 0.95 | 1.82 | 2.767 (2) | 171 |
O10—H10B···O13 | 0.95 | 1.76 | 2.683 (3) | 162 |
O10—H10A···O6i | 0.95 | 1.79 | 2.719 (2) | 166 |
O11—H11B···O14 | 0.95 | 1.77 | 2.692 (3) | 163 |
O11—H11A···O1v | 0.95 | 1.98 | 2.906 (2) | 163 |
O12—H12B···O7 | 0.95 | 1.87 | 2.808 (2) | 171 |
O12—H12A···O4vi | 0.95 | 1.86 | 2.795 (2) | 166 |
O13—H13B···O13vii | 0.95 | 1.92 | 2.868 (5) | 179 |
O13—H13A···O4vii | 0.95 | 1.83 | 2.770 (3) | 171 |
O14—H14B···O5i | 0.95 | 1.79 | 2.732 (3) | 170 |
O14—H14A···O13 | 0.95 | 2.20 | 3.123 (4) | 164 |
O15—H15D···O12viii | 0.95 | 1.86 | 2.772 (3) | 161 |
O15—H15C···O8 | 0.95 | 1.86 | 2.770 (2) | 161 |
Symmetry codes: (i) −x, −y+1, −z+1; (iii) x−1, y, z; (iv) x−1, y, z+1; (v) −x, −y, −z+1; (vi) −x+1, −y, −z+1; (vii) −x+1, −y+1, −z+1; (viii) −x+1, −y, −z. |
Experimental details
Crystal data | |
Chemical formula | (C4H12N2)[Co(H2O)6][Co(C7H3O4)2]2·8H2O |
Mr | 1177.59 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 150 |
a, b, c (Å) | 8.4682 (10), 11.9287 (14), 12.9091 (15) |
α, β, γ (°) | 63.478 (2), 78.683 (2), 83.063 (2) |
V (Å3) | 1143.3 (2) |
Z | 1 |
Radiation type | Mo Kα |
µ (mm−1) | 1.18 |
Crystal size (mm) | 0.50 × 0.48 × 0.20 |
Data collection | |
Diffractometer | Bruker SMART 1000 |
Absorption correction | Multi-scan (SADABS; Bruker, 1998) |
Tmin, Tmax | 0.589, 0.798 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 9953, 5061, 4261 |
Rint | 0.025 |
(sin θ/λ)max (Å−1) | 0.651 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.036, 0.097, 1.06 |
No. of reflections | 5061 |
No. of parameters | 322 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.59, −0.62 |
Computer programs: SMART (Bruker, 1998), SMART, SAINT (Bruker, 1998), SHELXS97 (Sheldrick, 1997), SHELXL97 (Sheldrick, 1997), SHELXTL (Bruker, 2005), SHELXTL.
D—H···A | D—H | H···A | D···A | D—H···A |
N3—H3B···O1 | 0.90 | 1.92 | 2.808 (2) | 166.8 |
N3—H3A···O8i | 0.90 | 1.91 | 2.772 (2) | 159.1 |
O9—H9B···O3ii | 0.95 | 1.92 | 2.855 (2) | 168.4 |
O9—H9A···O15iii | 0.95 | 1.82 | 2.767 (2) | 170.7 |
O10—H10B···O13 | 0.95 | 1.76 | 2.683 (3) | 162.1 |
O10—H10A···O6ii | 0.95 | 1.79 | 2.719 (2) | 165.5 |
O11—H11B···O14 | 0.95 | 1.77 | 2.692 (3) | 162.8 |
O11—H11A···O1iv | 0.95 | 1.98 | 2.906 (2) | 163.1 |
O12—H12B···O7 | 0.95 | 1.87 | 2.808 (2) | 170.8 |
O12—H12A···O4v | 0.95 | 1.86 | 2.795 (2) | 165.5 |
O13—H13B···O13vi | 0.95 | 1.92 | 2.868 (5) | 178.9 |
O13—H13A···O4vi | 0.95 | 1.83 | 2.770 (3) | 171.1 |
O14—H14B···O5ii | 0.95 | 1.79 | 2.732 (3) | 170.4 |
O14—H14A···O13 | 0.95 | 2.20 | 3.123 (4) | 164.3 |
O15—H15D···O12vii | 0.95 | 1.86 | 2.772 (3) | 161.2 |
O15—H15C···O8 | 0.95 | 1.86 | 2.770 (2) | 160.5 |
Symmetry codes: (i) x−1, y, z; (ii) −x, −y+1, −z+1; (iii) x−1, y, z+1; (iv) −x, −y, −z+1; (v) −x+1, −y, −z+1; (vi) −x+1, −y+1, −z+1; (vii) −x+1, −y, −z. |
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Non-covalent interactions including hydrogen bonds are of great importance in stabilizing the structures of different compounds in solid state. We have so far synthesized several proton transfer compounds (Aghabozorg et al., 2006b; Manteghi et al., 2007) and their metal-organic complexes (Aghabozorg et al., 2006c; Aghabozorg et al., 2006 d; Aghabozorg et al., 2006 e; Aghabozorg et al., 2007). A wide range of various hydrogen bonds was observed in these compounds and water molecules were involved in hydrogen bonding formation of some of these structures.
Here, we report on the synthesis and X-ray crystal structure of the title compound, (I). The molecular structure of the compound (I) is shown in Fig. 1. The intermolecular hydrogen bond distances are listed in Table 1. This compound crystallizes in the triclinic system, space group P 1 with one formula in the unit cell. The most important feature of the title compound is the formation of both anionic [Co(pydc)2]2- and cationic [Co(H2O)6]2+ complexes (site symmetry 1), and (pipzH2)2+ ion (site symmetry 1), simultaneously. In the anionic complex, [Co(pydc)2]2-, the metal ion is hexacoordinated by two nitrogen atoms N1, and N2 and four oxygen atoms O2, O3, O6 and O7 of carboxylate groups of two (pydc)2- fragments which act as tridentate ligands. N1 and N2 atoms of the two (pydc)2- fragments occupy the axial positions, while oxygen atoms form the equatorial plane. The N1—Co2—N2 angle revealed with a 14.88° deviation from linearity.
The mean Co—N and Co—O bond lengths for Co2 are 2.0147 (18) and 2.1575 (17) Å, respectively and are consistent with the corresponding data reported in the literature (Aghabozorg et al., 2006a). According to bond lengths, bond and torsion angles, arrangement of the six donor atoms around Co2 is distorted octahedral.
The dihedral angel between the two planes of Co2N2O6 and N2Co2O2 [86.81 (9)°] indicate that two dianionic (pydc)2- units are almost perpendicular to each other.
In the cationic complex, [Co(H2O)6]2+, the metal ion is hexacoordinated by six oxygen atoms of water molecules with a nearly octahedral geometry around the central atom. The extensive O—H···O, N—H···O and C—H···O hydrogen bonds between [Co(H2O)6]2+, [Co(pydc)2]2-, (pipzH2)2+ and uncoordinated water molecules play an important role in stabilizing and architecture of the crystal (Table 1). The intermolecular forces in this compound consist of hydrogen bonding and ion pairing as well as π-π stacking between anion-anion fragments (3.5277 (15) Å -x, -y + 2, -z + 1) (Fig. 2) (Aghabozorg, et al., 2006f). These interactions result in the formation of a supramolecular structure based on a hydrogen-bonded network.