Supporting information
Crystallographic Information File (CIF) https://doi.org/10.1107/S1600536807048088/pk2050sup1.cif | |
Structure factor file (CIF format) https://doi.org/10.1107/S1600536807048088/pk2050Isup2.hkl |
CCDC reference: 667114
Key indicators
- Single-crystal X-ray study
- T = 200 K
- Mean (C-C) = 0.004 Å
- H-atom completeness 97%
- Disorder in solvent or counterion
- R factor = 0.040
- wR factor = 0.103
- Data-to-parameter ratio = 12.7
checkCIF/PLATON results
No syntax errors found
Alert level C PLAT041_ALERT_1_C Calc. and Rep. SumFormula Strings Differ .... ? PLAT042_ALERT_1_C Calc. and Rep. MoietyFormula Strings Differ .... ? PLAT068_ALERT_1_C Reported F000 Differs from Calcd (or Missing)... ? PLAT302_ALERT_4_C Anion/Solvent Disorder ......................... 17.00 Perc. PLAT311_ALERT_2_C Isolated Disordered Oxygen Atom (No H's ?) ..... <O94' PLAT417_ALERT_2_C Short Inter D-H..H-D H83A .. H95A .. 2.11 Ang. PLAT430_ALERT_2_C Short Inter D...A Contact O1 .. O94' .. 2.86 Ang. PLAT430_ALERT_2_C Short Inter D...A Contact O6 .. O94' .. 2.87 Ang. PLAT480_ALERT_4_C Long H...A H-Bond Reported H94A .. O93 .. 2.62 Ang.
Alert level G FORMU01_ALERT_2_G There is a discrepancy between the atom counts in the _chemical_formula_sum and the formula from the _atom_site* data. Atom count from _chemical_formula_sum:C18 H34 Co2 N4 O21 Atom count from the _atom_site data: C18 H32.68 Co2 N4 O21 CELLZ01_ALERT_1_G Difference between formula and atom_site contents detected. CELLZ01_ALERT_1_G WARNING: H atoms missing from atom site list. Is this intentional? From the CIF: _cell_formula_units_Z 4 From the CIF: _chemical_formula_sum C18 H34 Co2 N4 O21 TEST: Compare cell contents of formula and atom_site data atom Z*formula cif sites diff C 72.00 72.00 0.00 H 136.00 130.72 5.28 Co 8.00 8.00 0.00 N 16.00 16.00 0.00 O 84.00 84.00 0.00
0 ALERT level A = In general: serious problem 0 ALERT level B = Potentially serious problem 9 ALERT level C = Check and explain 3 ALERT level G = General alerts; check 5 ALERT type 1 CIF construction/syntax error, inconsistent or missing data 5 ALERT type 2 Indicator that the structure model may be wrong or deficient 0 ALERT type 3 Indicator that the structure quality may be low 2 ALERT type 4 Improvement, methodology, query or suggestion 0 ALERT type 5 Informative message, check
Metal-organic coordination polymers using 1H-benzimidazole-5-carboxylic acid as a bridging ligand were reported by Guo et al. (2006) and Liu et al. (2005).
Purple crystals form within 4 days of layering a 2.0 ml me thanol solution of Co(NO3)2.6H2O (0.1169 g, 0.40 mmol) through a 3.0 ml me thanol and 15 ml aqueous buffer layers onto a 10.0 ml aqueous solution containing 1H-benzimidazole-4,5-dicarboxylic acid (0.0415 g, 0.20 mmol) and KOH (4M, 0.4 ml).
The C-bound H atoms were placed in calculated positions (C–H = 0.93 Å) and refined in the riding-model approximation with Uiso(H) = 1.2 Ueq(C). The N-bound H atoms were found in a difference Fourier map, but were placed in calculated positions (C–H = 0.86 Å) and refined in the riding-model approximation with Uiso(H) = 1.2 Ueq(N). The H atoms of the coordinated water molecules and solvent water molecules were located in a difference Fourier map, and refined using a riding model with Usio(H) = 1.5 Ueq(O). The water molecule O94 is disordered over two positions; the occupancies of O94 and O94' refined to 0.84 and 0.16, respectively (O94' is only refined isotropically). Only one of the H atoms of solvent water molecule O95 could be found in a difference Fourier map because of its close proximity (ca 2.08 Å) to the disordered O94'.
N-Heterocyclic carboxylic acids are recognized as efficient N,O-donors exhibiting versatile coordination modes and hydrogen bonding interactions. Examples on the basis of 1H-benzimidazole-5-carboxylic acid have been reported, which give rise to various coordination polymers and supramolecular architectures (Guo et al.2006; Liu et al. 2005). Here we report the crystal structure of the title compound, [Co2(H2O)8(C9H4N2O4)2].5H2O, using a new family member of the N-heterocyclic carboxylic acids, 1H-benzimidazole-5,6-dicarboxylic acid (H3BIDC).
The asymmetric unit consists of two 1H-benzimidazole-5,6-dicarboxylate (H3BIDC) ligands, which are deprotonated to form HBIDC2– anions. Each of the CoII cations has an octahedral coordination environment, and is surrounded by four coordinated water molecules, one nitrogen atom of the benzimidazole ring, and one oxygen atom of the monodentate carboxylate group. Two CoII ions are bridged by two HBIDC2– ligands to form a M2L2 type complex (M: metal, L: ligand). There are two crystallographically distinct M2L2 units in the asymmetric unit (Fig. 1). A unit-cell packing diagram is shown in Fig. 2. The N-bound H atoms of the benzimidazole ring, the O atoms of the uncoordinated carboxylate group, and coordinated water molecules serve as hydrogen bonding donors and acceptors. Extensive hydrogen bonding interactions (Table 2) were observed among the title compound and solvent water molecules in the solid-state, and these help stabilize the crystal structure.
Metal-organic coordination polymers using 1H-benzimidazole-5-carboxylic acid as a bridging ligand were reported by Guo et al. (2006) and Liu et al. (2005).
Data collection: COLLECT (Nonius, 2000); cell refinement: SCALEPACK (Otwinowski & Minor 1997); data reduction: DENZO-SMN (Otwinowski & Minor 1997); program(s) used to solve structure: SHELXS97 (Sheldrick, 1997); program(s) used to refine structure: SHELXL97 (Sheldrick, 1997); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997); software used to prepare material for publication: WinGX (Farrugia, 1999).
[Co2(C9H4N2O4)2(H2O)8]·5H2O | F(000) = 1568 |
Mr = 760.35 | Dx = 1.759 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 16539 reflections |
a = 13.4210 (2) Å | θ = 2.0–25.4° |
b = 9.1096 (2) Å | µ = 1.26 mm−1 |
c = 23.8185 (4) Å | T = 200 K |
β = 99.5191 (6)° | Plate, purple |
V = 2871.95 (9) Å3 | 0.30 × 0.18 × 0.08 mm |
Z = 4 |
Nonius KappaCCD diffractometer | 5249 independent reflections |
Radiation source: sealed tube | 4216 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.032 |
φ and ω scans | θmax = 25.4°, θmin = 2.1° |
Absorption correction: multi-scan (SADABS; Sheldrick, 2003) | h = −16→16 |
Tmin = 0.776, Tmax = 0.905 | k = −10→8 |
22168 measured reflections | l = −28→28 |
Refinement on F2 | H-atom parameters constrained |
Least-squares matrix: full | w = 1/[σ2(Fo2) + (0.0316P)2 + 5.0966P] where P = (Fo2 + 2Fc2)/3 |
R[F2 > 2σ(F2)] = 0.040 | (Δ/σ)max = 0.001 |
wR(F2) = 0.103 | Δρmax = 0.72 e Å−3 |
S = 1.10 | Δρmin = −0.41 e Å−3 |
5249 reflections | Extinction correction: SHELXL97 (Sheldrick, 1997), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
412 parameters | Extinction coefficient: 0.0011 (2) |
0 restraints |
[Co2(C9H4N2O4)2(H2O)8]·5H2O | V = 2871.95 (9) Å3 |
Mr = 760.35 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 13.4210 (2) Å | µ = 1.26 mm−1 |
b = 9.1096 (2) Å | T = 200 K |
c = 23.8185 (4) Å | 0.30 × 0.18 × 0.08 mm |
β = 99.5191 (6)° |
Nonius KappaCCD diffractometer | 5249 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 2003) | 4216 reflections with I > 2σ(I) |
Tmin = 0.776, Tmax = 0.905 | Rint = 0.032 |
22168 measured reflections |
R[F2 > 2σ(F2)] = 0.040 | 0 restraints |
wR(F2) = 0.103 | H-atom parameters constrained |
S = 1.10 | Δρmax = 0.72 e Å−3 |
5249 reflections | Δρmin = −0.41 e Å−3 |
412 parameters |
Experimental. Comment on transmission values: The program SADABS (Sheldrick, 2003) outputs the ratio of minimum to maximum apparent transmission (0.858265). We have set T(max) to the expected value, i.e. exp(-rmin× µ) and we calculate T(min) from the minimum to maximum apparent transmission given by SADABS. |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
Co1 | 0.41028 (3) | 0.65075 (4) | 0.836342 (16) | 0.01866 (14) | |
Co2 | 1.08333 (3) | −0.16005 (4) | 0.658602 (16) | 0.01864 (14) | |
N1 | 0.6294 (2) | 0.2084 (3) | 1.10033 (10) | 0.0222 (6) | |
N2 | 0.64479 (19) | −0.0092 (3) | 1.06047 (11) | 0.0232 (6) | |
H2 | 0.654 | −0.1022 | 1.0578 | 0.028* | |
N3 | 0.8847 (2) | 0.3124 (3) | 0.40404 (10) | 0.0217 (6) | |
N4 | 0.86074 (19) | 0.5298 (3) | 0.44314 (10) | 0.0215 (6) | |
H4 | 0.849 | 0.6222 | 0.4455 | 0.026* | |
O1 | 0.47640 (15) | 0.4841 (2) | 0.88915 (8) | 0.0202 (5) | |
O2 | 0.62779 (17) | 0.5805 (2) | 0.92141 (10) | 0.0295 (5) | |
O3 | 0.59954 (16) | 0.2945 (2) | 0.83126 (9) | 0.0235 (5) | |
O4 | 0.5648 (2) | 0.0581 (3) | 0.83878 (9) | 0.0385 (6) | |
O5 | 1.01958 (15) | 0.0059 (2) | 0.60354 (8) | 0.0200 (5) | |
O6 | 0.85409 (16) | −0.0311 (2) | 0.59619 (10) | 0.0272 (5) | |
O7 | 0.92964 (19) | 0.2287 (3) | 0.67434 (9) | 0.0336 (6) | |
O8 | 0.9010 (2) | 0.4670 (2) | 0.66411 (9) | 0.0340 (6) | |
O81 | 0.34490 (16) | 0.7930 (2) | 0.77188 (9) | 0.0261 (5) | |
H81A | 0.3723 | 0.7869 | 0.7418 | 0.039* | |
H81B | 0.2843 | 0.7657 | 0.7627 | 0.039* | |
O82 | 0.44968 (18) | 0.5094 (3) | 0.77371 (9) | 0.0322 (6) | |
H82A | 0.4951 | 0.4471 | 0.7859 | 0.048* | |
H82B | 0.4481 | 0.5232 | 0.7381 | 0.048* | |
O83 | 0.27314 (16) | 0.5386 (3) | 0.83000 (10) | 0.0306 (5) | |
H83A | 0.2782 | 0.4493 | 0.8248 | 0.046* | |
H83B | 0.2304 | 0.5541 | 0.8522 | 0.046* | |
O84 | 0.55289 (15) | 0.7614 (2) | 0.83995 (9) | 0.0245 (5) | |
H84A | 0.584 | 0.7189 | 0.8694 | 0.037* | |
H84B | 0.5549 | 0.8532 | 0.8457 | 0.037* | |
O85 | 1.14099 (16) | −0.2984 (2) | 0.72871 (9) | 0.0240 (5) | |
H85A | 1.1462 | −0.3909 | 0.7256 | 0.036* | |
H85B | 1.1212 | −0.2771 | 0.7596 | 0.036* | |
O86 | 1.06101 (18) | −0.0035 (3) | 0.72108 (9) | 0.0336 (6) | |
H86A | 1.0698 | −0.0114 | 0.7562 | 0.05* | |
H86B | 1.024 | 0.0648 | 0.707 | 0.05* | |
O87 | 0.93868 (16) | −0.2432 (2) | 0.66332 (9) | 0.0265 (5) | |
H87A | 0.8983 | −0.1937 | 0.6399 | 0.04* | |
H87B | 0.9264 | −0.3336 | 0.6575 | 0.04* | |
O88 | 1.22080 (16) | −0.0591 (2) | 0.65935 (9) | 0.0268 (5) | |
H88A | 1.2394 | 0.0176 | 0.6779 | 0.04* | |
H88B | 1.2743 | −0.1056 | 0.6557 | 0.04* | |
O91 | 0.7014 (2) | 0.6817 (3) | 0.77346 (12) | 0.0492 (8) | |
H91A | 0.6887 | 0.7011 | 0.7381 | 0.074* | |
H91B | 0.6529 | 0.7054 | 0.7911 | 0.074* | |
O92 | 0.8534 (2) | 0.8892 (3) | 0.76493 (11) | 0.0534 (8) | |
H92A | 0.8201 | 0.8254 | 0.7812 | 0.08* | |
H92B | 0.894 | 0.8398 | 0.7485 | 0.08* | |
O93 | 0.8302 (2) | 0.8185 (3) | 0.42952 (15) | 0.0599 (9) | |
H93A | 0.7801 | 0.8784 | 0.4252 | 0.09* | |
H93B | 0.8778 | 0.8615 | 0.4162 | 0.09* | |
O94 | 0.7031 (3) | 0.7871 (3) | 0.53038 (15) | 0.0499 (14) | 0.840 (8) |
H94A | 0.6928 | 0.8093 | 0.4958 | 0.075* | 0.840 (8) |
H94B | 0.7502 | 0.8392 | 0.5476 | 0.075* | 0.840 (8) |
O94' | 0.6714 (12) | 0.8013 (18) | 0.5717 (8) | 0.038 (6)* | 0.160 (8) |
O95 | 0.6591 (3) | 0.7469 (4) | 0.65546 (15) | 0.0719 (10) | |
H95A | 0.6035 | 0.8022 | 0.6458 | 0.108* | |
C1 | 0.5651 (2) | 0.4767 (3) | 0.91659 (12) | 0.0191 (7) | |
C2 | 0.5928 (2) | 0.3377 (3) | 0.94980 (13) | 0.0183 (6) | |
C3 | 0.6041 (2) | 0.3530 (3) | 1.00843 (13) | 0.0208 (7) | |
H3 | 0.6019 | 0.445 | 1.0251 | 0.025* | |
C4 | 0.6190 (2) | 0.2267 (3) | 1.04167 (12) | 0.0197 (7) | |
C5 | 0.6450 (2) | 0.0662 (3) | 1.10842 (13) | 0.0239 (7) | |
H5 | 0.6552 | 0.0227 | 1.1443 | 0.029* | |
C6 | 0.6271 (2) | 0.0893 (3) | 1.01577 (13) | 0.0189 (7) | |
C7 | 0.6167 (2) | 0.0728 (3) | 0.95744 (13) | 0.0214 (7) | |
H7 | 0.6219 | −0.019 | 0.9411 | 0.026* | |
C8 | 0.5983 (2) | 0.1984 (3) | 0.92389 (12) | 0.0184 (6) | |
C9 | 0.5866 (2) | 0.1816 (3) | 0.85997 (13) | 0.0213 (7) | |
C10 | 0.9289 (2) | 0.0441 (3) | 0.58849 (12) | 0.0183 (7) | |
C11 | 0.9106 (2) | 0.1849 (3) | 0.55483 (12) | 0.0177 (6) | |
C12 | 0.9058 (2) | 0.1699 (3) | 0.49677 (13) | 0.0196 (7) | |
H12 | 0.9126 | 0.0781 | 0.4808 | 0.024* | |
C13 | 0.8906 (2) | 0.2943 (3) | 0.46267 (12) | 0.0187 (6) | |
C14 | 0.8668 (2) | 0.4547 (3) | 0.39564 (13) | 0.0237 (7) | |
H14 | 0.8591 | 0.4983 | 0.3599 | 0.028* | |
C15 | 0.8770 (2) | 0.4308 (3) | 0.48777 (13) | 0.0185 (7) | |
C16 | 0.8824 (2) | 0.4477 (3) | 0.54609 (12) | 0.0191 (7) | |
H16 | 0.8738 | 0.5393 | 0.5618 | 0.023* | |
C17 | 0.9008 (2) | 0.3246 (3) | 0.58027 (12) | 0.0189 (7) | |
C18 | 0.9107 (2) | 0.3408 (3) | 0.64404 (13) | 0.0210 (7) |
U11 | U22 | U33 | U12 | U13 | U23 | |
Co1 | 0.0225 (2) | 0.0194 (2) | 0.0143 (2) | 0.00200 (17) | 0.00370 (17) | 0.00148 (17) |
Co2 | 0.0228 (2) | 0.0182 (2) | 0.0151 (2) | 0.00204 (17) | 0.00394 (17) | 0.00131 (17) |
N1 | 0.0294 (14) | 0.0225 (14) | 0.0147 (13) | 0.0035 (12) | 0.0033 (11) | 0.0005 (11) |
N2 | 0.0312 (15) | 0.0180 (13) | 0.0213 (14) | 0.0038 (11) | 0.0068 (12) | 0.0026 (11) |
N3 | 0.0293 (14) | 0.0218 (14) | 0.0146 (13) | 0.0026 (11) | 0.0053 (11) | 0.0029 (11) |
N4 | 0.0288 (14) | 0.0173 (13) | 0.0180 (14) | 0.0029 (11) | 0.0026 (11) | 0.0020 (11) |
O1 | 0.0218 (11) | 0.0201 (11) | 0.0182 (11) | 0.0012 (9) | 0.0018 (9) | 0.0033 (9) |
O2 | 0.0313 (13) | 0.0216 (12) | 0.0330 (13) | −0.0045 (10) | −0.0024 (10) | 0.0076 (10) |
O3 | 0.0314 (12) | 0.0221 (12) | 0.0180 (11) | −0.0017 (10) | 0.0073 (9) | 0.0001 (10) |
O4 | 0.0743 (19) | 0.0210 (13) | 0.0193 (12) | −0.0099 (12) | 0.0050 (12) | −0.0027 (10) |
O5 | 0.0209 (11) | 0.0211 (11) | 0.0182 (11) | 0.0030 (9) | 0.0038 (9) | 0.0043 (9) |
O6 | 0.0232 (12) | 0.0232 (12) | 0.0347 (13) | −0.0012 (10) | 0.0032 (10) | 0.0095 (10) |
O7 | 0.0611 (17) | 0.0240 (13) | 0.0177 (12) | 0.0165 (12) | 0.0123 (11) | 0.0057 (10) |
O8 | 0.0635 (17) | 0.0201 (12) | 0.0184 (12) | −0.0012 (12) | 0.0068 (11) | −0.0024 (10) |
O81 | 0.0270 (12) | 0.0352 (13) | 0.0162 (11) | 0.0034 (10) | 0.0035 (9) | 0.0044 (10) |
O82 | 0.0465 (15) | 0.0324 (13) | 0.0175 (12) | 0.0148 (11) | 0.0046 (10) | 0.0012 (10) |
O83 | 0.0257 (12) | 0.0360 (14) | 0.0313 (13) | −0.0021 (10) | 0.0084 (10) | −0.0041 (11) |
O84 | 0.0279 (12) | 0.0194 (11) | 0.0254 (12) | −0.0008 (9) | 0.0016 (10) | 0.0058 (9) |
O85 | 0.0330 (12) | 0.0231 (12) | 0.0171 (11) | 0.0056 (10) | 0.0077 (10) | 0.0023 (9) |
O86 | 0.0490 (15) | 0.0325 (13) | 0.0183 (12) | 0.0157 (12) | 0.0021 (11) | −0.0024 (10) |
O87 | 0.0286 (12) | 0.0202 (12) | 0.0302 (13) | −0.0010 (10) | 0.0036 (10) | 0.0063 (10) |
O88 | 0.0227 (12) | 0.0233 (12) | 0.0345 (13) | 0.0003 (9) | 0.0052 (10) | −0.0006 (10) |
O91 | 0.0509 (17) | 0.0457 (17) | 0.0576 (18) | 0.0134 (14) | 0.0278 (14) | 0.0186 (14) |
O92 | 0.070 (2) | 0.0516 (18) | 0.0443 (17) | −0.0194 (16) | 0.0270 (15) | −0.0080 (14) |
O93 | 0.0347 (15) | 0.0281 (15) | 0.120 (3) | 0.0071 (12) | 0.0217 (17) | 0.0268 (16) |
O94 | 0.067 (2) | 0.0368 (19) | 0.040 (2) | −0.0193 (17) | −0.0086 (18) | 0.0133 (16) |
O95 | 0.073 (2) | 0.059 (2) | 0.079 (2) | 0.0141 (18) | −0.0002 (19) | −0.0172 (18) |
C1 | 0.0250 (17) | 0.0194 (16) | 0.0139 (15) | 0.0009 (13) | 0.0065 (13) | 0.0004 (12) |
C2 | 0.0180 (15) | 0.0166 (15) | 0.0202 (16) | 0.0007 (12) | 0.0031 (13) | 0.0031 (13) |
C3 | 0.0260 (16) | 0.0180 (16) | 0.0185 (16) | 0.0006 (13) | 0.0038 (13) | −0.0011 (13) |
C4 | 0.0225 (16) | 0.0219 (16) | 0.0147 (15) | 0.0012 (13) | 0.0030 (12) | 0.0016 (13) |
C5 | 0.0311 (18) | 0.0237 (17) | 0.0176 (16) | 0.0044 (14) | 0.0066 (14) | 0.0051 (14) |
C6 | 0.0221 (16) | 0.0170 (16) | 0.0178 (16) | 0.0015 (12) | 0.0039 (13) | 0.0020 (13) |
C7 | 0.0262 (17) | 0.0184 (16) | 0.0200 (16) | 0.0001 (13) | 0.0052 (13) | −0.0015 (13) |
C8 | 0.0183 (15) | 0.0204 (16) | 0.0173 (15) | 0.0000 (12) | 0.0055 (12) | −0.0003 (13) |
C9 | 0.0245 (16) | 0.0210 (17) | 0.0188 (16) | 0.0004 (13) | 0.0048 (13) | 0.0012 (14) |
C10 | 0.0264 (17) | 0.0183 (16) | 0.0110 (14) | 0.0016 (13) | 0.0052 (13) | −0.0022 (12) |
C11 | 0.0155 (14) | 0.0197 (16) | 0.0184 (16) | 0.0015 (12) | 0.0042 (12) | 0.0000 (13) |
C12 | 0.0263 (16) | 0.0158 (15) | 0.0173 (15) | 0.0023 (13) | 0.0053 (13) | −0.0003 (12) |
C13 | 0.0202 (15) | 0.0200 (16) | 0.0161 (15) | 0.0016 (13) | 0.0037 (12) | 0.0011 (13) |
C14 | 0.0323 (18) | 0.0225 (17) | 0.0163 (16) | 0.0004 (14) | 0.0042 (14) | 0.0033 (14) |
C15 | 0.0182 (15) | 0.0186 (16) | 0.0179 (16) | −0.0001 (12) | 0.0010 (12) | 0.0035 (13) |
C16 | 0.0210 (15) | 0.0168 (15) | 0.0195 (16) | 0.0009 (13) | 0.0029 (13) | −0.0028 (13) |
C17 | 0.0187 (15) | 0.0215 (16) | 0.0160 (15) | 0.0006 (12) | 0.0017 (12) | 0.0003 (13) |
C18 | 0.0220 (16) | 0.0228 (18) | 0.0191 (16) | −0.0011 (13) | 0.0056 (13) | −0.0003 (14) |
Co1—O1 | 2.075 (2) | O85—H85A | 0.8492 |
Co1—O81 | 2.088 (2) | O85—H85B | 0.8453 |
Co1—O83 | 2.089 (2) | O86—H86A | 0.8289 |
Co1—O82 | 2.103 (2) | O86—H86B | 0.8315 |
Co1—N1i | 2.114 (3) | O87—H87A | 0.8418 |
Co1—O84 | 2.152 (2) | O87—H87B | 0.8463 |
Co2—O88 | 2.059 (2) | O88—H88A | 0.8427 |
Co2—O5 | 2.090 (2) | O88—H88B | 0.8502 |
Co2—O87 | 2.104 (2) | O91—H91A | 0.85 |
Co2—O86 | 2.118 (2) | O91—H91B | 0.8579 |
Co2—N3ii | 2.133 (3) | O92—H92A | 0.8623 |
Co2—O85 | 2.133 (2) | O92—H92B | 0.8503 |
N1—C5 | 1.322 (4) | O93—H93A | 0.859 |
N1—C4 | 1.391 (4) | O93—H93B | 0.8553 |
N1—Co1i | 2.114 (3) | O94—O94' | 1.142 (18) |
N2—C5 | 1.332 (4) | O94—H94A | 0.8377 |
N2—C6 | 1.383 (4) | O94—H94B | 0.8405 |
N2—H2 | 0.86 | O95—H95A | 0.8987 |
N3—C14 | 1.328 (4) | C1—C2 | 1.507 (4) |
N3—C13 | 1.395 (4) | C2—C3 | 1.386 (4) |
N3—Co2ii | 2.133 (3) | C2—C8 | 1.419 (4) |
N4—C14 | 1.336 (4) | C3—C4 | 1.392 (4) |
N4—C15 | 1.383 (4) | C3—H3 | 0.93 |
N4—H4 | 0.86 | C4—C6 | 1.408 (4) |
O1—C1 | 1.261 (4) | C5—H5 | 0.93 |
O2—C1 | 1.258 (4) | C6—C7 | 1.381 (4) |
O3—C9 | 1.262 (4) | C7—C8 | 1.394 (4) |
O4—C9 | 1.248 (4) | C7—H7 | 0.93 |
O5—C10 | 1.259 (4) | C8—C9 | 1.512 (4) |
O6—C10 | 1.254 (4) | C10—C11 | 1.511 (4) |
O7—C18 | 1.252 (4) | C11—C12 | 1.380 (4) |
O8—C18 | 1.260 (4) | C11—C17 | 1.425 (4) |
O81—H81A | 0.8597 | C12—C13 | 1.390 (4) |
O81—H81B | 0.8436 | C12—H12 | 0.93 |
O82—H82A | 0.8483 | C13—C15 | 1.405 (4) |
O82—H82B | 0.8541 | C14—H14 | 0.93 |
O83—H83A | 0.8276 | C15—C16 | 1.387 (4) |
O83—H83B | 0.8533 | C16—C17 | 1.384 (4) |
O84—H84A | 0.8491 | C16—H16 | 0.93 |
O84—H84B | 0.8475 | C17—C18 | 1.510 (4) |
O1—Co1—O81 | 170.17 (9) | Co2—O87—H87B | 119.9 |
O1—Co1—O83 | 88.25 (9) | H87A—O87—H87B | 109.1 |
O81—Co1—O83 | 89.55 (9) | Co2—O88—H88A | 124.2 |
O1—Co1—O82 | 81.36 (8) | Co2—O88—H88B | 123.1 |
O81—Co1—O82 | 89.00 (9) | H88A—O88—H88B | 106.6 |
O83—Co1—O82 | 88.35 (9) | H91A—O91—H91B | 113 |
O1—Co1—N1i | 98.29 (9) | H92A—O92—H92B | 105.6 |
O81—Co1—N1i | 91.34 (9) | H93A—O93—H93B | 106.4 |
O83—Co1—N1i | 91.46 (10) | H94A—O94—H94B | 109.4 |
O82—Co1—N1i | 179.61 (10) | O2—C1—O1 | 124.5 (3) |
O1—Co1—O84 | 91.72 (8) | O2—C1—C2 | 118.7 (3) |
O81—Co1—O84 | 90.09 (8) | O1—C1—C2 | 116.5 (3) |
O83—Co1—O84 | 177.69 (9) | C3—C2—C8 | 121.5 (3) |
O82—Co1—O84 | 89.36 (9) | C3—C2—C1 | 114.9 (3) |
N1i—Co1—O84 | 90.83 (9) | C8—C2—C1 | 123.4 (3) |
O88—Co2—O5 | 87.45 (8) | C2—C3—C4 | 118.1 (3) |
O88—Co2—O87 | 173.57 (9) | C2—C3—H3 | 120.9 |
O5—Co2—O87 | 90.48 (8) | C4—C3—H3 | 120.9 |
O88—Co2—O86 | 85.63 (9) | N1—C4—C3 | 130.6 (3) |
O5—Co2—O86 | 82.13 (8) | N1—C4—C6 | 109.4 (3) |
O87—Co2—O86 | 88.05 (9) | C3—C4—C6 | 120.0 (3) |
O88—Co2—N3ii | 90.76 (9) | N1—C5—N2 | 113.7 (3) |
O5—Co2—N3ii | 98.09 (9) | N1—C5—H5 | 123.1 |
O87—Co2—N3ii | 95.57 (9) | N2—C5—H5 | 123.1 |
O86—Co2—N3ii | 176.37 (10) | C7—C6—N2 | 132.8 (3) |
O88—Co2—O85 | 92.79 (8) | C7—C6—C4 | 122.4 (3) |
O5—Co2—O85 | 167.66 (8) | N2—C6—C4 | 104.8 (3) |
O87—Co2—O85 | 87.93 (8) | C6—C7—C8 | 117.8 (3) |
O86—Co2—O85 | 85.59 (9) | C6—C7—H7 | 121.1 |
N3ii—Co2—O85 | 94.25 (9) | C8—C7—H7 | 121.1 |
C5—N1—C4 | 104.5 (3) | C7—C8—C2 | 120.1 (3) |
C5—N1—Co1i | 122.9 (2) | C7—C8—C9 | 118.3 (3) |
C4—N1—Co1i | 130.5 (2) | C2—C8—C9 | 121.6 (3) |
C5—N2—C6 | 107.6 (3) | O4—C9—O3 | 124.0 (3) |
C5—N2—H2 | 126.2 | O4—C9—C8 | 118.5 (3) |
C6—N2—H2 | 126.2 | O3—C9—C8 | 117.6 (3) |
C14—N3—C13 | 104.2 (3) | O6—C10—O5 | 124.5 (3) |
C14—N3—Co2ii | 125.6 (2) | O6—C10—C11 | 118.5 (3) |
C13—N3—Co2ii | 129.7 (2) | O5—C10—C11 | 116.8 (3) |
C14—N4—C15 | 107.1 (3) | C12—C11—C17 | 121.5 (3) |
C14—N4—H4 | 126.5 | C12—C11—C10 | 115.1 (3) |
C15—N4—H4 | 126.5 | C17—C11—C10 | 123.4 (3) |
C1—O1—Co1 | 128.73 (19) | C11—C12—C13 | 118.9 (3) |
C10—O5—Co2 | 130.89 (19) | C11—C12—H12 | 120.5 |
Co1—O81—H81A | 112.8 | C13—C12—H12 | 120.5 |
Co1—O81—H81B | 106.1 | C12—C13—N3 | 131.3 (3) |
H81A—O81—H81B | 106.9 | C12—C13—C15 | 119.3 (3) |
Co1—O82—H82A | 114.7 | N3—C13—C15 | 109.4 (3) |
Co1—O82—H82B | 130.3 | N3—C14—N4 | 114.0 (3) |
H82A—O82—H82B | 109.7 | N3—C14—H14 | 123 |
Co1—O83—H83A | 113.5 | N4—C14—H14 | 123 |
Co1—O83—H83B | 123.3 | N4—C15—C16 | 132.3 (3) |
H83A—O83—H83B | 109.6 | N4—C15—C13 | 105.4 (3) |
Co1—O84—H84A | 97.6 | C16—C15—C13 | 122.4 (3) |
Co1—O84—H84B | 118.2 | C17—C16—C15 | 118.3 (3) |
H84A—O84—H84B | 108.6 | C17—C16—H16 | 120.8 |
Co2—O85—H85A | 122.9 | C15—C16—H16 | 120.8 |
Co2—O85—H85B | 114.9 | C16—C17—C11 | 119.6 (3) |
H85A—O85—H85B | 110.2 | C16—C17—C18 | 119.3 (3) |
Co2—O86—H86A | 129.6 | C11—C17—C18 | 121.1 (3) |
Co2—O86—H86B | 111.4 | O7—C18—O8 | 123.3 (3) |
H86A—O86—H86B | 116.6 | O7—C18—C17 | 118.4 (3) |
Co2—O87—H87A | 105.7 | O8—C18—C17 | 118.3 (3) |
Symmetry codes: (i) −x+1, −y+1, −z+2; (ii) −x+2, −y, −z+1. |
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2···O94iii | 0.86 | 1.96 | 2.779 (4) | 159 |
N4—H4···O93 | 0.86 | 1.84 | 2.673 (4) | 164 |
O81—H81A···O3iv | 0.86 | 1.84 | 2.683 (3) | 166 |
O81—H81B···O85v | 0.84 | 2.05 | 2.883 (3) | 172 |
O82—H82A···O3 | 0.85 | 2.14 | 2.974 (3) | 169 |
O82—H82B···O4iv | 0.85 | 1.84 | 2.691 (3) | 176 |
O83—H83A···O95vi | 0.83 | 2.05 | 2.812 (4) | 153 |
O83—H83B···O6iv | 0.85 | 1.96 | 2.721 (3) | 147 |
O84—H84A···O2 | 0.85 | 1.8 | 2.616 (3) | 162 |
O84—H84B···O4vii | 0.85 | 1.88 | 2.708 (3) | 165 |
O85—H85A···O92viii | 0.85 | 2.02 | 2.850 (4) | 167 |
O85—H85B···O7ix | 0.85 | 1.82 | 2.649 (3) | 168 |
O86—H86A···O8ix | 0.83 | 1.88 | 2.711 (3) | 176 |
O86—H86B···O7 | 0.83 | 2.03 | 2.859 (3) | 178 |
O87—H87A···O6 | 0.84 | 1.85 | 2.642 (3) | 156 |
O87—H87B···O8x | 0.85 | 1.86 | 2.689 (3) | 166 |
O88—H88A···O91ix | 0.84 | 1.98 | 2.813 (3) | 173 |
O88—H88B···O3ix | 0.85 | 1.9 | 2.732 (3) | 165 |
O91—H91A···O95 | 0.85 | 1.99 | 2.836 (4) | 180 |
O91—H91B···O84 | 0.86 | 1.98 | 2.837 (3) | 174 |
O92—H92A···O91 | 0.86 | 2.05 | 2.813 (4) | 148 |
O92—H92B···O87vii | 0.85 | 2.34 | 3.089 (4) | 148 |
O93—H93A···O2xi | 0.86 | 2.07 | 2.844 (3) | 151 |
O93—H93A···O88xii | 0.86 | 2.6 | 3.045 (4) | 114 |
O93—H93B···O5xii | 0.86 | 1.95 | 2.788 (3) | 168 |
O94—H94A···O2xi | 0.84 | 2.1 | 2.889 (4) | 158 |
O94—H94A···O93 | 0.84 | 2.62 | 3.180 (5) | 126 |
O94—H94B···O6vii | 0.84 | 2.04 | 2.873 (4) | 174 |
O95—H95A···O1iv | 0.9 | 2.07 | 2.910 (4) | 155 |
Symmetry codes: (iii) x, −y+1/2, z+1/2; (iv) −x+1, y+1/2, −z+3/2; (v) x−1, y+1, z; (vi) −x+1, y−1/2, −z+3/2; (vii) x, y+1, z; (viii) −x+2, y−3/2, −z+3/2; (ix) −x+2, y−1/2, −z+3/2; (x) x, y−1, z; (xi) x, −y+3/2, z−1/2; (xii) −x+2, −y+1, −z+1. |
Experimental details
Crystal data | |
Chemical formula | [Co2(C9H4N2O4)2(H2O)8]·5H2O |
Mr | 760.35 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 200 |
a, b, c (Å) | 13.4210 (2), 9.1096 (2), 23.8185 (4) |
β (°) | 99.5191 (6) |
V (Å3) | 2871.95 (9) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 1.26 |
Crystal size (mm) | 0.30 × 0.18 × 0.08 |
Data collection | |
Diffractometer | Nonius KappaCCD |
Absorption correction | Multi-scan (SADABS; Sheldrick, 2003) |
Tmin, Tmax | 0.776, 0.905 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 22168, 5249, 4216 |
Rint | 0.032 |
(sin θ/λ)max (Å−1) | 0.602 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.040, 0.103, 1.10 |
No. of reflections | 5249 |
No. of parameters | 412 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.72, −0.41 |
Computer programs: COLLECT (Nonius, 2000), SCALEPACK (Otwinowski & Minor 1997), DENZO-SMN (Otwinowski & Minor 1997), SHELXS97 (Sheldrick, 1997), SHELXL97 (Sheldrick, 1997), ORTEP-3 for Windows (Farrugia, 1997), WinGX (Farrugia, 1999).
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2···O94i | 0.86 | 1.96 | 2.779 (4) | 159 |
N4—H4···O93 | 0.86 | 1.84 | 2.673 (4) | 164 |
O81—H81A···O3ii | 0.86 | 1.84 | 2.683 (3) | 166 |
O81—H81B···O85iii | 0.84 | 2.05 | 2.883 (3) | 172 |
O82—H82A···O3 | 0.85 | 2.14 | 2.974 (3) | 169 |
O82—H82B···O4ii | 0.85 | 1.84 | 2.691 (3) | 176 |
O83—H83A···O95iv | 0.83 | 2.05 | 2.812 (4) | 153 |
O83—H83B···O6ii | 0.85 | 1.96 | 2.721 (3) | 147 |
O84—H84A···O2 | 0.85 | 1.8 | 2.616 (3) | 162 |
O84—H84B···O4v | 0.85 | 1.88 | 2.708 (3) | 165 |
O85—H85A···O92vi | 0.85 | 2.02 | 2.850 (4) | 167 |
O85—H85B···O7vii | 0.85 | 1.82 | 2.649 (3) | 168 |
O86—H86A···O8vii | 0.83 | 1.88 | 2.711 (3) | 176 |
O86—H86B···O7 | 0.83 | 2.03 | 2.859 (3) | 178 |
O87—H87A···O6 | 0.84 | 1.85 | 2.642 (3) | 156 |
O87—H87B···O8viii | 0.85 | 1.86 | 2.689 (3) | 166 |
O88—H88A···O91vii | 0.84 | 1.98 | 2.813 (3) | 173 |
O88—H88B···O3vii | 0.85 | 1.9 | 2.732 (3) | 165 |
O91—H91A···O95 | 0.85 | 1.99 | 2.836 (4) | 180 |
O91—H91B···O84 | 0.86 | 1.98 | 2.837 (3) | 174 |
O92—H92A···O91 | 0.86 | 2.05 | 2.813 (4) | 148 |
O92—H92B···O87v | 0.85 | 2.34 | 3.089 (4) | 148 |
O93—H93A···O2ix | 0.86 | 2.07 | 2.844 (3) | 151 |
O93—H93A···O88x | 0.86 | 2.6 | 3.045 (4) | 114 |
O93—H93B···O5x | 0.86 | 1.95 | 2.788 (3) | 168 |
O94—H94A···O2ix | 0.84 | 2.1 | 2.889 (4) | 158 |
O94—H94A···O93 | 0.84 | 2.62 | 3.180 (5) | 126 |
O94—H94B···O6v | 0.84 | 2.04 | 2.873 (4) | 174 |
O95—H95A···O1ii | 0.9 | 2.07 | 2.910 (4) | 155 |
Symmetry codes: (i) x, −y+1/2, z+1/2; (ii) −x+1, y+1/2, −z+3/2; (iii) x−1, y+1, z; (iv) −x+1, y−1/2, −z+3/2; (v) x, y+1, z; (vi) −x+2, y−3/2, −z+3/2; (vii) −x+2, y−1/2, −z+3/2; (viii) x, y−1, z; (ix) x, −y+3/2, z−1/2; (x) −x+2, −y+1, −z+1. |
Subscribe to Acta Crystallographica Section E: Crystallographic Communications
The full text of this article is available to subscribers to the journal.
- Information on subscribing
- Sample issue
- If you have already subscribed, you may need to register
N-Heterocyclic carboxylic acids are recognized as efficient N,O-donors exhibiting versatile coordination modes and hydrogen bonding interactions. Examples on the basis of 1H-benzimidazole-5-carboxylic acid have been reported, which give rise to various coordination polymers and supramolecular architectures (Guo et al.2006; Liu et al. 2005). Here we report the crystal structure of the title compound, [Co2(H2O)8(C9H4N2O4)2].5H2O, using a new family member of the N-heterocyclic carboxylic acids, 1H-benzimidazole-5,6-dicarboxylic acid (H3BIDC).
The asymmetric unit consists of two 1H-benzimidazole-5,6-dicarboxylate (H3BIDC) ligands, which are deprotonated to form HBIDC2– anions. Each of the CoII cations has an octahedral coordination environment, and is surrounded by four coordinated water molecules, one nitrogen atom of the benzimidazole ring, and one oxygen atom of the monodentate carboxylate group. Two CoII ions are bridged by two HBIDC2– ligands to form a M2L2 type complex (M: metal, L: ligand). There are two crystallographically distinct M2L2 units in the asymmetric unit (Fig. 1). A unit-cell packing diagram is shown in Fig. 2. The N-bound H atoms of the benzimidazole ring, the O atoms of the uncoordinated carboxylate group, and coordinated water molecules serve as hydrogen bonding donors and acceptors. Extensive hydrogen bonding interactions (Table 2) were observed among the title compound and solvent water molecules in the solid-state, and these help stabilize the crystal structure.